Metagenome / Metatranscriptome Family F065879

Basic Information
Family ID	F065879
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	105 residues
Representative Sequence	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKKSRGNSSSQTASVFAFLTLGVLLVAMLMLPGNAGPRGSA
Number of Associated Samples	103
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.57 %
% of genes from short scaffolds (< 2000 bps)	0.79 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (98.425 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (13.386 % of family members)
Environment Ontology (ENVO)	Unclassified (59.055 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.717 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.96% β-sheet: 0.00% Coil/Unstructured: 34.04%
Feature Viewer

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Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00486	Trans_reg_C	43.31
PF02518	HATPase_c	2.36
PF01713	Smr	1.57
PF03190	Thioredox_DsbH	0.79
PF00364	Biotin_lipoyl	0.79
PF02786	CPSase_L_D2	0.79
PF13492	GAF_3	0.79
PF13493	DUF4118	0.79
PF13520	AA_permease_2	0.79
PF00289	Biotin_carb_N	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1331	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains	General function prediction only [R]	0.79

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.43 %
All Organisms	root	All Organisms	1.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.43 %
cellular organisms	root	All Organisms → cellular organisms	1.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.57 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009177\|Ga0105248_10011074	All Organisms → cellular organisms → Bacteria	9948	Open in IMG/M
3300009520\|Ga0116214_1268497	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.69%
Environmental	Environmental	43.31%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.69%
Terrestrial	Environmental → Terrestrial	34.65%
Aquatic	Environmental → Aquatic	8.66%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.58%
Soil	Environmental → Terrestrial → Soil	33.07%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.75%
Sediment	Environmental → Aquatic → Sediment	6.30%
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Roots	Host-Associated → Plants → Roots	2.36%
Peat	Environmental → Terrestrial → Peat	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.05%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.75%
Loam	Environmental → Terrestrial → Soil → Loam	9.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.36%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.30%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.36%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.79%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	13.39%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.30%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.57%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.57%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.79%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.79%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015063	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034281	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4B_00326270	2170459004	Grass Soil	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVENTRKKARETSTSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSMGELVRDSAP
JGI1027J12803_1031583652	3300000955	Soil	MMCFLCGKEIGWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARSNSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGS
Ga0062389_1019401521	3300004092	Bog Forest Soil	MVDRQYCSAEHRKEARLASANALREEEDEQEIWSVSRTRQKQAARGNSSSQTASIFAFLTLGALLIAMLMLPGNATSRGSAFPTGSPDPGTHEGLIARATNSIGEMVRDSAPVTLRHDFRGGLTDWTTAALKAGSQ
Ga0068869_1019052791	3300005334	Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGPADPGKRQGLIEHAAVSLAELVRASAPVTLHQDLRGGLADWTTSTLRAA
Ga0070666_115087831	3300005335	Switchgrass Rhizosphere	MCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVGNNTRKKARETSSNQTASVFAFLTLGVLLIAMLMLPGNGVSRGSAFPSGSTDPGTRQGLFERATNSI
Ga0070660_1019229791	3300005339	Corn Rhizosphere	MIRHCSFMMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVLLVAMLMLPGNSGSGGSAFPTGSAVPGTRQGLLERAASSVGELVRD
Ga0070691_107248762	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASI
Ga0070667_1005321061	3300005367	Switchgrass Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALRDEEDEHEIWSVENTRKKARGNSSQTASVFAFLTLGVLLVAMLMLPGTAGPRGSAFPTGSTDPGTRQGLFERAASAVGELVRDSAPVTLHQDFRTG
Ga0070667_1020633841	3300005367	Switchgrass Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGPADPGKRQGLIEHAAVSLAELVRASAP
Ga0070709_113630991	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIRHCSFMMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVLLVAMLMLPGNGGSGGSAFPTGSAVPGTRQGLLERAASSVGELVRDSAP
Ga0070711_1014632781	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIRHCSFMMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVLL
Ga0070708_1021572741	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRKKHHGNSSSQTASIFAFLTLGALLVAMLMLPGNSSSRASSFPSGPADPGTRQGLIERAAVSIGELVRASAP
Ga0070681_115509531	3300005458	Corn Rhizosphere	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEEQEIWSVAKTRQKHGSRNSSSQTASIFAF
Ga0070707_1009659232	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIF
Ga0070679_1004524742	3300005530	Corn Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSFPSGPADPGKRQGLVERAAVSIAELVRDSAPVTLHQDFRVGIADWTTSTLRA
Ga0070679_1005925451	3300005530	Corn Rhizosphere	MMCFLCGKEINWLRTMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKRARGNSASQTASVFAF
Ga0070735_101391194	3300005534	Surface Soil	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDDEYEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFPTGSTDPGTRQGLLERV
Ga0068853_1004323041	3300005539	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVGNNTRKKARETSSNQTASVFAFLTLGVLLIAMLMLPGNGVSRGSAFP
Ga0070693_1005353082	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLVAMLMLPGN
Ga0070665_1012545952	3300005548	Switchgrass Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLLVAMLMLPGNGVSRGSAFPSGSTDPGTRQGLFERATNSIGE
Ga0068855_1016256832	3300005563	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDDEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFPTGSTDPGTRQGLFERAASSVGELVRDSAPVTLHQDFRTGLGDWTIA
Ga0068856_1010212721	3300005614	Corn Rhizosphere	MVDRQYCTAEHRKEARLASANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASIFAFLTLGVLLVAMLMLPGNSSVPR
Ga0068852_1001921133	3300005616	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEEEEQEIWSVAKTRQKHGSRNSSSQTASIFAFLTLA
Ga0068852_1024764751	3300005616	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETSSNQTASVFAFLTLGVLLVAM
Ga0068859_1014957571	3300005617	Switchgrass Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVLLVAMLMLPGNGGSGGSAFPTGSAVPGTRQGLLERAASSVGELVRDSAPVTLHQDFR
Ga0068866_110784352	3300005718	Miscanthus Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALRDEEDEHEIWSVENTRKKARGNSSQTASVFAFLTLGVLLVAMLMLPGTAGPRGSAFPTGSTDPGTRQGLFE
Ga0068851_104710002	3300005834	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLLVAMLMLPGNGVSRGSAFPSGSTDPGTRQG
Ga0068863_1027198611	3300005841	Switchgrass Rhizosphere	MIRHCSFMMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGV
Ga0068860_1013908811	3300005843	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSFPSGPADPGKRQGLIERAAVSIGELVRDSAPITLHQDFRVGIA
Ga0068862_1013588392	3300005844	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSF
Ga0075024_1004671131	3300006047	Watersheds	MMCFLCGNEIGWLRAMVDRQYCSADHRKEARLASANALREEDDEHEIWSVENTRKKARGTSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSVDPGTHQGLFERAAGSVGELVRDSAPVTLHQDFRSGLGEWTIA
Ga0075029_1005908251	3300006052	Watersheds	MIDRQYCSAEHRQEARLVSANALREEEDEEHEIWSVENTRRKARGNSSNQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSLGDLVRESAPVTLHQDFRTGL
Ga0075029_1010330771	3300006052	Watersheds	MLCFLCGKEIGWLRSTVDRQYCSTQHRKEARLASAVVFREEDDDDQELWSVSRLKQRHHGRSDSASHQTASVFAFLTLAALLIAMLMPG
Ga0075029_1012811211	3300006052	Watersheds	MVDRQYCSVEHRKEARLASANALREEDDEEHEIWSVENTRRKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAGPRGSAFPTGST
Ga0075015_1005265221	3300006102	Watersheds	MMCFLCGKEISWLRTMVDRQYCSVEHRKEARLASANALREEDDEEHEIWSVENTRRKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAGPRGSAFPTG
Ga0097621_1003124241	3300006237	Miscanthus Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLIAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSIGELVRDSAPVTLHQDFRTGLGDW
Ga0097621_1014136661	3300006237	Miscanthus Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKKSRGNSSSQTASVFAFLTLGVLLVAMLMLPGNAGPRGSAFPTGSTDPGTRQGLFERATSSIGELVRDSAPVTLHQDFRTGLG
Ga0068871_1024204531	3300006358	Miscanthus Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKKSRGNSSSQTASVF
Ga0075522_102194411	3300006638	Arctic Peat Soil	MMCFLCGKEISWLRTMVDRQYCSVEHRKEARLASANALREEDEEHEIWSVAHTRKKGAGRGNSSSQTASVFAFLALGVLLVAMLMLPGNSVPRGNTFPTGST
Ga0068865_1004179432	3300006881	Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGPADPGKRQGLIEHAAVSLAELVRASAPVTLHQDL
Ga0075424_1028480281	3300006904	Populus Rhizosphere	MIRHCSFMMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASV
Ga0105240_108239942	3300009093	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDDEHEIWSVAHTRKKGAGRSSTSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFPTGSTDPGTRQGLFERAASSVGELVRDSAPVTLHQDFRTGLGDWTIAS
Ga0105240_108515061	3300009093	Corn Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLVSANALREEEEDQEIWSVAKTRKKHPANSSSQTASVFAFLTLGALLVAMLMLPGNASSRGSSFSSGPAAPGTHQGL
Ga0105240_128111591	3300009093	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVL
Ga0105247_100313733	3300009101	Switchgrass Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPS*
Ga0105242_120634081	3300009176	Miscanthus Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLVAML
Ga0105248_100110741	3300009177	Switchgrass Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGPADPGKRQG
Ga0105248_111495531	3300009177	Switchgrass Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEEDEHEIWSVENTRKKARGTSTQTASVFAFLTLGVLLVAMLMLPGNAGPRGSAFPTGSTDSGTRQGLFERAASSVGELIRDSAPVTLHQDFRTGLGDWTIAS
Ga0116214_12684971	3300009520	Peatlands Soil	MLCFLCGKEIGWPRSLVDRQYCSAEHRKEARLASAQAYRDEDEQELWSVSKSNRKKGVGAGASAGQTASLFAFFTV
Ga0105237_101229091	3300009545	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLLIAMLMLPGNGVSRGSAFPSGSTDPG
Ga0105237_115425432	3300009545	Corn Rhizosphere	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRRKPRGNSSSQTASIFAFLTLGALLVAML
Ga0105237_115463291	3300009545	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFPTGSTDPGTRQGLFE
Ga0105238_100769894	3300009551	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLLVAMLMLPGNGVSRGSAFPSGSTD
Ga0105238_103790433	3300009551	Corn Rhizosphere	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRRKPRGNSS
Ga0105238_107098902	3300009551	Corn Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSFPSGPADPGKRQGLVERAAVSIAELVRDSAPVT
Ga0105249_126347271	3300009553	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALL
Ga0134128_116353721	3300010373	Terrestrial Soil	MMCFLCGKEISWLRTMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGS
Ga0105239_107497112	3300010375	Corn Rhizosphere	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRRKPRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRGSSFPSGPSDPGAHQGLIEHAAGSLSALIRDS
Ga0105239_109347112	3300010375	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLLVAMLMLPGNGVSRGSAFPSGSTDPGTRQGLFERAT
Ga0134127_117380191	3300010399	Terrestrial Soil	MMCFLCGKEISWLRTMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFP
Ga0105246_119832221	3300011119	Miscanthus Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEEDEHEIWSVENTRKKARGTSTQTASVFAFLTLGVLLVAMLMLPGNAGPRGSAFPTGSTDPGTRQGLFERATSSIGELVRDSAPVTLHQD
Ga0137389_112798451	3300012096	Vadose Zone Soil	MVDRQYCSSEHRKEARLASAVVYREEEDDDQELWSVSRSKQRHHGRPDSASHQTASIFAFLTLGALLIAM
Ga0137377_103622633	3300012211	Vadose Zone Soil	MVDRQYCCAEHRKEARMAAANVLREEDDEAELWSVLRSRQKQAARRGNSANQTASVFAF
Ga0137359_116918242	3300012923	Vadose Zone Soil	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVENTRKKARETSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGS
Ga0157373_110075361	3300013100	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVLLVAMLMLPGNGGSGGSAFPTGSAVPGTRQGLLERAASSVGELVRD
Ga0157370_112319161	3300013104	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMM
Ga0157369_118000111	3300013105	Corn Rhizosphere	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRRKPRGSSSSQTASIFAFLTLGALLVAMLMLPGNSASRGSSF
Ga0157374_111075052	3300013296	Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLVSANALREEEEDQEIWSVAKTRKKHPANSSSQTASVFAFLTLGALLVAMLMLPGNASSRGSSFSSGPAAPGTHQGLIERAAGSIGELVRDSAPVTLH
Ga0157374_115348941	3300013296	Miscanthus Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFPTGSTDPGTRQGLFERAASSVGELVRDSAPVTLHQDFRTGLGDWTIASLK
Ga0157378_118076782	3300013297	Miscanthus Rhizosphere	MMCFLCGKEIGWLRTIVDRQYCSAEHRKEARLASSNALREEDDEQEIWSVAHTRRKLAGRSASGSQTASIFAFLTLGALLIAMLMLPGTGSSRG
Ga0157378_128566501	3300013297	Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGPADPGKRQGLIE
Ga0157378_132083191	3300013297	Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSAANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAML
Ga0157372_113001802	3300013307	Corn Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLG
Ga0120135_10854571	3300014054	Permafrost	MLCFLCGKEIGWLRTMVDRQYCSAEHRKDARLASANALREEDDEHEIWSVENTRKKARSNSSTQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSVGELVRDSAPVTLHQDFRTGLG
Ga0181519_106280121	3300014658	Bog	MMCYLCGKEINWLRSMVDRQYCSAEHRKEARLASANAVREEEEHELWSVENTRKKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAGPRGSAFPAGSVDPGTHEGLFERAASSVGELVRESAPVTLHQDFRSGLGEWTIASLKT
Ga0157377_113737881	3300014745	Miscanthus Rhizosphere	MVDRQYCTAEHRKEARLASANALREEDDEHEIWSVVNTRKKGAGRGNSSSQTASIFAFLTLGVLLVAMLMLPGNSSVPRGSAFPTGSADPGTRQGLFERATGSLG
Ga0182030_110251031	3300014838	Bog	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANAFREEEEDQEIWSVAKTRRKPRGNSSSQTAS
Ga0157379_110637221	3300014968	Switchgrass Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALRDEDEEHEIWSVENTRKKTRETSSSQTASVFAFLTLGVLLIAMLMLPGNAVPR
Ga0157376_117108501	3300014969	Miscanthus Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETSSNQTASVFAFLTLGVLLVAMLMLPGNGVSRGSAFPSGSTDPGTRQGLFERATNSIGELVRDSAPVTLHQDFRTGL
Ga0167649_1026533	3300015063	Glacier Forefield Soil	MMCFLCGKEIGWLRTMVDRQYCSADHRKEARMASANALREEDEEHEIWSVENTRKKARGTSSSQTASVFAFLTLGVLLVAMLMLPGNAAGPRGSASPTGSTDPGTRQGLFERATSSVGELVRDSAPVTLHQDFRSGLGD
Ga0132256_1027382161	3300015372	Arabidopsis Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLIAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSIGELVRD
Ga0187825_103640802	3300017930	Freshwater Sediment	MLCFLCGKEIGWLRSTVDRQYCSTQHRKEARLASAVVFREEDDDDQELWSVSRLKQRHHGRSDSASHQTASIFAFLTLAALLIAM
Ga0209483_13153671	3300025862	Arctic Peat Soil	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEDQEIWSVARTRRKHRGNSSSQTASVFAFLTLGAL
Ga0207710_103951892	3300025900	Switchgrass Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLIAMLMLPGNAVPRGSAFPTGSTDP
Ga0207699_102830861	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSTQHRKEARLASAVVFREEDDDDQELWSVSRLKQRHQGRSESASHQTASIFAFLTLAALLIAMLMPG
Ga0207699_108951461	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MIRHCSFMMCFLCGKEISWLRTMVDRQYCSAEHRKEARLSSANALREEDDEHEIWSVANTRKKGAGRGNSSSQTASVFAFLTLGVLLVAMLMLPGNGGSGGSAFPTGSAVPGTRQGLLERAASSVGELVRDSAPVTLHQD
Ga0207654_101625554	3300025911	Corn Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKKSRGNSSSQTASVFAFLTLGVLLVAMLMLPGNAGPRGSA
Ga0207695_106309851	3300025913	Corn Rhizosphere	MLCFLCGKEIGWLRTMVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRRKPRGNSSSQTASIFAFLTLGALLVAMLMLPGNTAS
Ga0207695_112574031	3300025913	Corn Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLVSANALREEEEDQEIWSVAKTRKKHPANSSSQTASVFAFLTLGALLVAMLMLPGNASSRGSSFSSGPAAPGTHQGLIER
Ga0207695_113953302	3300025913	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDDEHEIWSVAHTRKKGAGRSSTSQTAS
Ga0207671_100899371	3300025914	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLL
Ga0207657_100300141	3300025919	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDDEHEIWSVAHTRKKGAGRSSTSQTASVFAFLALGVL
Ga0207652_104934711	3300025921	Corn Rhizosphere	MMCFLCGKEINWLRTMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKRARGNSASQTASVFAFLT
Ga0207694_104426671	3300025924	Corn Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSFPSGPADPGKRQGLVERAAVSIAELVRS
Ga0207679_104142192	3300025945	Corn Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETSSNQTASVFAFLTLGVLLV
Ga0207651_120585491	3300025960	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGPADPGKRQGLIEHAAVSLAELVRASAPVTLHQDLRGGLADW
Ga0207712_121005182	3300025961	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQT
Ga0207640_111379832	3300025981	Corn Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKDARLASANALREVDEEHEIWSVAHTRKKGAGRSSSSQ
Ga0207677_113579151	3300026023	Miscanthus Rhizosphere	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLSSTALREEEEDQEIWSVAKTRKKYRGNSSSQTASIFAFLTLGALLVAMLMLPGNSASRASSFPSGP
Ga0207702_101754891	3300026078	Corn Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVA
Ga0207641_122275981	3300026088	Switchgrass Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLIAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSIGELVRD
Ga0209583_103213112	3300027910	Watersheds	MLCFLCGKEIGWLRTMVDRQYCSAEHRKDARLASANALRDEEDEQEIWSVAKTRQRLAGRSSTSNQSASIFAFLTLGALLVALLMLPGNLGSRGSAFPSVSADPG
Ga0209698_107925542	3300027911	Watersheds	MCFLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKKARGNPSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFARAPFLMHFRKPREHLDRAFAAARGVPRLIKR
Ga0209069_101026341	3300027915	Watersheds	MLCFLCGKEIGWLRTMVDRQYCSAEHRKDARLASANALRDEEDEQEIWSVAKTRQRLAGRSSPSNQSASIFAFLTLGALLVAMLMLPGNSGPRGSAGEPRI
Ga0268266_100418975	3300028379	Switchgrass Rhizosphere	MMCFLCGKEISWLRVMVDRQYCSSEHRQEARLASSNAVREEEDEHELWAVENNTRKKARETFSNQTASVFAFLTLGVLLVAMLMLPGNGVSRGSAFPSGSTDPGTRQGLFERATNSIGEL
Ga0268265_109932112	3300028380	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSFPSGPADPGKRQGLI
Ga0268264_112024082	3300028381	Switchgrass Rhizosphere	MLCFLCGKQIGWLRSTVDRQYCSAEHRKEARLSSANALREEEEDQEIWSVAKTRKKHRGNSSSQTASIFAFLTLGALLVAMLMLPGNSGSRASSFPSGPADPGKRQGLIERAAVSIGELVRDSAPITLHQDFRVGIADW
Ga0268264_115996341	3300028381	Switchgrass Rhizosphere	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLIAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSS
Ga0222749_101068101	3300029636	Soil	MVDRQYCSPQHRKEARLASAVVFREEEDDDQELWSVSRSKQKHHGRPDSASHQTASIFAFLTLAALLIA
Ga0311339_117021881	3300029999	Palsa	MIDRQYCSAEHRQEARLASANALREEEDEEHEIWSVENRRKTRGNSSSQTASVFAFLTLGVLLVAMLML
Ga0265459_138742491	3300030741	Soil	MIDRQYCSAEHRQEARLASANALREEEDEEHEIWSVENRRKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAVSRGSAFPTGSTDPGTRQGLFERATDSVAALVRDSAPVTLHQDFRTGLGDG
Ga0170834_1025691061	3300031057	Forest Soil	LRSTVDRQYCSADHRKEARLASSNALRDEEEDQEIWSVAKTRKKHRGNSSSQTASVFAFLTLGALLVAMLMLPGNSGSRGSTFPSGPADHGTRQGLVERAAVSIGELVRDSA
Ga0170823_110140201	3300031128	Forest Soil	VALRRCFIYDVLLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVEATRKKGRGNSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSVGELVRDSAPVTLHQDFRTGLGDKSD
Ga0170824_1066817541	3300031231	Forest Soil	DVVLFMMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERAASSVGELVRDSAPVTLQ
Ga0170824_1145665421	3300031231	Forest Soil	MMCFLCGKEIGWLRSMVDRQYCSAEHRKEARLASTNALRESEDEDHEIWSVENTRKKARENSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSVGELVRDSAPVT
Ga0170818_1015733671	3300031474	Forest Soil	MLCFLCGKEIGWLRSTVDRQYCSAEHRKEARLASANALREEEEDQEIWSVAKTRKKPHGSSSSQTASIFAFLTLGALLVAMLMLPGNA
Ga0170818_1060391162	3300031474	Forest Soil	MMCFLCGKEISWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVENTRKKARETSTSQTASVFAFLTLAVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFARAASSMG
Ga0302326_117685471	3300031525	Palsa	MMCYLCGKEISWLRSMVDRQYCSAEHRKEARLASANALREEEEHELWSVENTRKKARGNSSSQTASVFAFLTLGVLLLAMLMLPGNAVPRGSAFPTGSVDPGNREGLFERTASSVGELVRESAPVTLHQDFRSGLGEWTIASLKTA
Ga0265313_104459011	3300031595	Rhizosphere	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANVMREEEDEHEIWSVENTRKKVSGNSSSQTASAFAFLTLGALLVAMLMLPGNGGSRG
Ga0310686_1026509682	3300031708	Soil	MIDRQYCSAEHRQEARLASANALREEEDEEHEIWSVENRRKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAVSRGSAFPTGSTDPGTRQGLFERATT
Ga0307475_110239811	3300031754	Hardwood Forest Soil	MLCFLCGKEIGWLRTMVDRQYCSAEHRKDARLASANALREEEDEQEIWSVAKTRQRMGRSSPSNQTASIFAFLTLGALLVAMLMLPGNSGPRGSAFPSVSADPGTRKGLVERASGSIGEILR
Ga0307478_112704362	3300031823	Hardwood Forest Soil	MMCFLCGKDISWLRSMVDRQYCSAEHRKEARLASANALREEDEEHEIWSVENTRKKVRGNPSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSV
Ga0307471_1014650941	3300032180	Hardwood Forest Soil	MMCFLCGKEIGWLRSMVDRQYCSAEHRKDARLASANALREEDEEHEIWSVENTRKKTRGNSSSQT
Ga0307471_1040131341	3300032180	Hardwood Forest Soil	MMCFLCGKEIGWLRSMVDRQYCSAEHRKDARLASANALREEEEEHEIWSVENTRKKARGNSSSQTASVFAFLTLGVLLVAMLMLPGNAVPRGSAFPTGSTDPGTRQGLFERATSSIGELVRDSAPVTLHQDFR
Ga0307472_1023521621	3300032205	Hardwood Forest Soil	MVDRQYCSAGHRKDARLASANALREEEDEQEIWSVAKTRQRMGRSSPSNQTASIFAFLTLGALLVAMLMLPANSGPRGSAFPSVSADPATRKGLVERASGS
Ga0310811_110070351	3300033475	Soil	MMCFLCGKEISWLRTMVDRQYCSAEHRKEARLASANALREEDDEHEIWSVAHTRKKGAGRSSSSQTASVFAFLALGVLLVAMMMLPGNSVPRGSAFPTGSTDPGTRQGLFERAASSVGELVRD
Ga0370481_0238486_2_418	3300034281	Untreated Peat Soil	MMCFLCGNEISWLRAMVDRQYCSADHRKEARLASANALREEDDEHEIWSVENTRKKARGTSSSQTASVFAFLTLGVLLVAMLMLPGKAVPRGSAFPTGSVDPGPRQGLFERASSSVGELVRDSAPVTLHQDFRSGLGEW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065879

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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