NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F065868

Metagenome / Metatranscriptome Family F065868

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F065868
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 62 residues
Representative Sequence MGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVETRAAEQLRSGGSLAEQLIRFRAGQ
Number of Associated Samples 112
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.10 %
% of genes near scaffold ends (potentially truncated) 99.21 %
% of genes from short scaffolds (< 2000 bps) 89.76 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.276 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.835 % of family members)
Environment Ontology (ENVO) Unclassified
(24.409 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(39.370 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 65.91%    β-sheet: 0.00%    Coil/Unstructured: 34.09%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF02775TPP_enzyme_C 2.36
PF13620CarboxypepD_reg 1.57
PF13417GST_N_3 0.79
PF07730HisKA_3 0.79
PF17070Thx 0.79
PF00498FHA 0.79
PF14310Fn3-like 0.79
PF12833HTH_18 0.79
PF14827dCache_3 0.79
PF02609Exonuc_VII_S 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG1722Exonuclease VII small subunitReplication, recombination and repair [L] 0.79
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 0.79
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.79
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.79
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 0.79


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.28 %
UnclassifiedrootN/A4.72 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000651|AP72_2010_repI_A10DRAFT_1025485All Organisms → cellular organisms → Bacteria756Open in IMG/M
3300002245|JGIcombinedJ26739_100430232All Organisms → cellular organisms → Bacteria1198Open in IMG/M
3300004081|Ga0063454_100304414All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1000Open in IMG/M
3300004156|Ga0062589_100192788All Organisms → cellular organisms → Bacteria → Proteobacteria1460Open in IMG/M
3300004780|Ga0062378_10103180All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria707Open in IMG/M
3300004780|Ga0062378_10249655All Organisms → cellular organisms → Bacteria → Proteobacteria511Open in IMG/M
3300005179|Ga0066684_10902067All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300005186|Ga0066676_10085248All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1885Open in IMG/M
3300005341|Ga0070691_10166879All Organisms → cellular organisms → Bacteria → Proteobacteria1138Open in IMG/M
3300005341|Ga0070691_10899800Not Available546Open in IMG/M
3300005363|Ga0008090_15458661All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1240Open in IMG/M
3300005436|Ga0070713_101050128All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria787Open in IMG/M
3300005447|Ga0066689_10030490All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2745Open in IMG/M
3300005447|Ga0066689_10256541All Organisms → cellular organisms → Bacteria → Proteobacteria1077Open in IMG/M
3300005534|Ga0070735_10573992All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria670Open in IMG/M
3300005548|Ga0070665_100559647All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1156Open in IMG/M
3300005836|Ga0074470_11805329All Organisms → cellular organisms → Bacteria → Proteobacteria1186Open in IMG/M
3300005844|Ga0068862_101868120All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300005881|Ga0075294_1025504All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria584Open in IMG/M
3300006237|Ga0097621_101660740All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria608Open in IMG/M
3300006806|Ga0079220_10233162All Organisms → cellular organisms → Bacteria1089Open in IMG/M
3300006854|Ga0075425_100719743All Organisms → cellular organisms → Bacteria → Proteobacteria1146Open in IMG/M
3300009093|Ga0105240_10538152All Organisms → cellular organisms → Bacteria → Proteobacteria1294Open in IMG/M
3300009093|Ga0105240_10548524All Organisms → cellular organisms → Bacteria1279Open in IMG/M
3300009148|Ga0105243_10484910All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1168Open in IMG/M
3300009174|Ga0105241_12147534All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300009545|Ga0105237_11967659All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300009551|Ga0105238_12908185Not Available515Open in IMG/M
3300009792|Ga0126374_11740322All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300010046|Ga0126384_11209612All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales697Open in IMG/M
3300010048|Ga0126373_11442992All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300010359|Ga0126376_10092816All Organisms → cellular organisms → Bacteria → Proteobacteria2279Open in IMG/M
3300010360|Ga0126372_11101734All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300010360|Ga0126372_11784572All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300010371|Ga0134125_11625135All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300010375|Ga0105239_11338641All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300010376|Ga0126381_101112596All Organisms → cellular organisms → Bacteria1141Open in IMG/M
3300010376|Ga0126381_101448033All Organisms → cellular organisms → Bacteria993Open in IMG/M
3300010376|Ga0126381_102625527All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300010396|Ga0134126_12140262All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium611Open in IMG/M
3300010880|Ga0126350_11564218All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300011414|Ga0137442_1092675All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300012212|Ga0150985_103090698Not Available625Open in IMG/M
3300012285|Ga0137370_10078631All Organisms → cellular organisms → Bacteria → Proteobacteria1824Open in IMG/M
3300012349|Ga0137387_10716155All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300012357|Ga0137384_10591909All Organisms → cellular organisms → Bacteria → Acidobacteria906Open in IMG/M
3300012912|Ga0157306_10067360All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300012914|Ga0157297_10471537Not Available521Open in IMG/M
3300012917|Ga0137395_10039146All Organisms → cellular organisms → Bacteria → Proteobacteria2918Open in IMG/M
3300012917|Ga0137395_10308844All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1121Open in IMG/M
3300012917|Ga0137395_10781857All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300012930|Ga0137407_11764579All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300012985|Ga0164308_10179014All Organisms → cellular organisms → Bacteria → Proteobacteria1596Open in IMG/M
3300014150|Ga0134081_10070197All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300015077|Ga0173483_10287276All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300015193|Ga0167668_1076366All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300015242|Ga0137412_10006741All Organisms → cellular organisms → Bacteria9201Open in IMG/M
3300015373|Ga0132257_103490379All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300015374|Ga0132255_101397641All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300016371|Ga0182034_10056954All Organisms → cellular organisms → Bacteria → Proteobacteria2613Open in IMG/M
3300016371|Ga0182034_11376349All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium616Open in IMG/M
3300017947|Ga0187785_10205699All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300017959|Ga0187779_10105823All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1699Open in IMG/M
3300017972|Ga0187781_10530236All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300018086|Ga0187769_10018291All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4610Open in IMG/M
3300020580|Ga0210403_11531925All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium501Open in IMG/M
3300021088|Ga0210404_10309292All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300021377|Ga0213874_10099095All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300021402|Ga0210385_10175092All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1549Open in IMG/M
3300021403|Ga0210397_10819882All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300025913|Ga0207695_10340920All Organisms → cellular organisms → Bacteria1386Open in IMG/M
3300025913|Ga0207695_11592828All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300025924|Ga0207694_10978629All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300025928|Ga0207700_10367010All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1256Open in IMG/M
3300025939|Ga0207665_10137374All Organisms → cellular organisms → Bacteria → Proteobacteria1740Open in IMG/M
3300025961|Ga0207712_10733514All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300026078|Ga0207702_11311908All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300026295|Ga0209234_1016883All Organisms → cellular organisms → Bacteria → Proteobacteria2766Open in IMG/M
3300026333|Ga0209158_1172840All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300027537|Ga0209419_1028034All Organisms → cellular organisms → Bacteria1053Open in IMG/M
3300027610|Ga0209528_1034111All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1125Open in IMG/M
3300027727|Ga0209328_10223507All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300027767|Ga0209655_10169458All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300027867|Ga0209167_10554051All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300027884|Ga0209275_10346971All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300028381|Ga0268264_11580779All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium666Open in IMG/M
3300028536|Ga0137415_11267326All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300029636|Ga0222749_10552423All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300029999|Ga0311339_10509057All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300031090|Ga0265760_10105959All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria892Open in IMG/M
3300031231|Ga0170824_124969115All Organisms → cellular organisms → Bacteria → Proteobacteria1539Open in IMG/M
3300031561|Ga0318528_10368279All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300031564|Ga0318573_10033654All Organisms → cellular organisms → Bacteria → Proteobacteria2414Open in IMG/M
3300031572|Ga0318515_10508114All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300031680|Ga0318574_10613626All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300031708|Ga0310686_101493117All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300031713|Ga0318496_10019395All Organisms → cellular organisms → Bacteria → Proteobacteria3341Open in IMG/M
3300031720|Ga0307469_12158153All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300031723|Ga0318493_10578952All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300031740|Ga0307468_101154896All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300031748|Ga0318492_10769496All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300031748|Ga0318492_10771757All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300031751|Ga0318494_10643797All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300031763|Ga0318537_10095628All Organisms → cellular organisms → Bacteria1099Open in IMG/M
3300031821|Ga0318567_10426510All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300031845|Ga0318511_10088020All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1306Open in IMG/M
3300031845|Ga0318511_10337670All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300031846|Ga0318512_10265971All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300031945|Ga0310913_10077943All Organisms → cellular organisms → Bacteria → Proteobacteria2208Open in IMG/M
3300031962|Ga0307479_10198015All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1978Open in IMG/M
3300031962|Ga0307479_11488783All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300032001|Ga0306922_11120968All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300032008|Ga0318562_10074664All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales1894Open in IMG/M
3300032009|Ga0318563_10334455All Organisms → cellular organisms → Bacteria820Open in IMG/M
3300032009|Ga0318563_10730450All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300032010|Ga0318569_10102907All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1292Open in IMG/M
3300032039|Ga0318559_10370103All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300032044|Ga0318558_10312814All Organisms → cellular organisms → Bacteria777Open in IMG/M
3300032064|Ga0318510_10014388All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2395Open in IMG/M
3300032067|Ga0318524_10072337All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1676Open in IMG/M
3300032090|Ga0318518_10047064All Organisms → cellular organisms → Bacteria → Proteobacteria2038Open in IMG/M
3300032157|Ga0315912_11646326Not Available504Open in IMG/M
3300032180|Ga0307471_101083101All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300032261|Ga0306920_102379396All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300032783|Ga0335079_11623320All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300032805|Ga0335078_10196572All Organisms → cellular organisms → Bacteria → Proteobacteria2805Open in IMG/M
3300032897|Ga0335071_10347974Not Available1435Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil22.83%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.09%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.09%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere7.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.51%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.15%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.15%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.15%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.36%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment1.57%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.57%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.57%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.57%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.57%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.57%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.79%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.79%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.79%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.79%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.79%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.79%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.79%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.79%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.79%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.79%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.79%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.79%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000651Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004780Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1FreshEnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005881Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_202EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011414Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015193Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300027537Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AP72_2010_repI_A10DRAFT_102548513300000651Forest SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEELRSGGALADHLIGF
JGIcombinedJ26739_10043023213300002245Forest SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHTMEGRAAQELRSGGSFAQQLI
Ga0063454_10030441423300004081SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHDVEGRAAGELRSGGSFAQQLIQFRAGQ
Ga0062589_10019278813300004156SoilVTSFRKRILVLIIGLIAVTQTVTLVAVLASTRRNVEARAAEQLAAGSSYALQLVKFRAGQLAS
Ga0062378_1010318023300004780Wetland SedimentMNSFRNRLLVMIIGLIAVTQTVTVVAVLASTRRNVEARAAEQLAAGTSYAQQFVEFRASQLASGV
Ga0062378_1024965513300004780Wetland SedimentMISLGVVNIRSGMRSFRNRLLVLIIGLVIAAQTVTLLAVLGRTQSAVRTRANEQLNAGAAVA
Ga0066684_1090206713300005179SoilMGSFRKRLLVLIIGLVVVTQTVTLTAVLASTAHNVEARAAEHLRSGGSFVEQLIRFR
Ga0066676_1008524833300005186SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTRHTVEARAAEQLRSGGAFAEHLIGFRAGQLAN
Ga0070691_1016687933300005341Corn, Switchgrass And Miscanthus RhizosphereVTSFRKRILVLIIGLIAVTQTVTLVAVLASMRRNVESRAADQLAAGSSYALQLVRFRAGQLASG
Ga0070691_1089980013300005341Corn, Switchgrass And Miscanthus RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAERLRSGGTFVEQLIRFRAA
Ga0008090_1545866133300005363Tropical Rainforest SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRRMVETRAAEQLRSGATLADNLMGFRAGQLANGVALL
Ga0070713_10105012813300005436Corn, Switchgrass And Miscanthus RhizosphereMSSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAEQLRSGSSFVQQLIRFRGSQLAN
Ga0066689_1003049013300005447SoilMGSFRKRLLVLIIGLGVVTQTVTLAAVLVSTRHTVEARAAEQLRSGGAFAEHLIGFRAGQLA
Ga0066689_1025654113300005447SoilMGSFRKRLLVLIIGLVVVTQTVTLTAVLASTAHNVEARAAEQLRSGGSFVEQLIRFRAGELANGVAVLAA
Ga0070735_1057399213300005534Surface SoilMRSFRKRLLVLIIGLVFLTQTVTLAAVLASVAHNVEARAADELRAGSSFAEQLLHFRAGQLANGV
Ga0070665_10055964733300005548Switchgrass RhizosphereMTSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAEQLRSGSSFVQQLIRFRGSQLANAVAVLA
Ga0074470_1180532913300005836Sediment (Intertidal)MNSFRNRLLVLIIGLIAVTQTVTLVAVLESTRRSVEARAAEQLTAGTSYALQLVKF
Ga0068862_10186812013300005844Switchgrass RhizosphereVTSFRKRILVLIIGLIAVTQTVTLVAVLASMRRNVESRAADQLAAGSSYALQLVRFR
Ga0075294_102550413300005881Rice Paddy SoilMHSFRNRLLVLIIGLIAVTQTVTVVAVLGSTRADVEARASEQLAAGSAYALQLVKFRAGQ
Ga0097621_10166074023300006237Miscanthus RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHDVEGRAAGELRSGGSFAQQLI
Ga0079220_1023316233300006806Agricultural SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRGTVEQRAREELGSGSSLALQLMRF
Ga0075425_10071974313300006854Populus RhizosphereMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEELRAGGALAEHLIGFRAG
Ga0105240_1053815213300009093Corn RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHDVEGRAAGELRSGGSFAQQLIQFRAGQLANG
Ga0105240_1054852413300009093Corn RhizosphereMSSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAEQLRSGSSFVQQLIRFRGGQLANGVAVL
Ga0105243_1048491013300009148Miscanthus RhizosphereMRSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARSWEQLRSGAGIADQL
Ga0105241_1214753413300009174Corn RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHDVEGRAAGELRSGGSFAQQLIQFRAGQLAN
Ga0105237_1196765913300009545Corn RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLARTAHDVEGRAADELRSGGSFAQQL
Ga0105238_1290818523300009551Corn RhizosphereMGSFRKRLLVLIIGLAVLTQTVTLFAVLASTARDVKARGAEQLSADGSFVDQLIHYRAEQLAS
Ga0126374_1174032213300009792Tropical Forest SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEELRSGATLAKQLIGFRA
Ga0126384_1120961223300010046Tropical Forest SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLASTRGTVEERAKEELGSGASLALQLMRFRASELAN
Ga0126373_1144299223300010048Tropical Forest SoilMGSFRKRLLVLIIGLSVVTQTVTLAAVLISTRHTVEARAAEELRSGGTLAEHLIGYRAGQLQQGV
Ga0126376_1009281613300010359Tropical Forest SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGGTLAEHLIDFRAGQLANGVAL
Ga0126372_1110173413300010360Tropical Forest SoilMGSLPNRLLVLIIGLVIVTQTVTLAAVLASTRGTVEARAAEELRSGGSVAEHLIGYR
Ga0126372_1178457213300010360Tropical Forest SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEELRSGATLAEHLIDFRAGQLANGVA
Ga0134125_1162513523300010371Terrestrial SoilMTSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAEQLRSGTSFVQQLIRF
Ga0105239_1133864123300010375Corn RhizosphereMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTAHNVEARAAEQLRAGGSFVQQLIRFRG
Ga0126381_10111259613300010376Tropical Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRGTVEERAKEELGSGSALAVQLMRFRAGELANGVSATAA
Ga0126381_10144803313300010376Tropical Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTAHNVEARAAEQLRSGGSVVQQLIRFRA
Ga0126381_10262552713300010376Tropical Forest SoilMGSFRNRLLVLIIGLVIVTQTGTLAAVLISTRRMVEARAAEQLRSGATLADNLIGF
Ga0134126_1214026223300010396Terrestrial SoilGSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAERLRSGGTFVEQLIRFRAAQLASGVVVLAGDFGFR*
Ga0126350_1156421813300010880Boreal Forest SoilMGDIFEEFMGSFRKRLLVLIIGLSVVTQTVTLAAVLISTRRTVEARAAEQLRSGAALAEHLIRFRAGQLANGVAVLAG
Ga0137442_109267513300011414SoilMNSFRNRLLVLIIGLIAVTQTVTLVAVLESTRRHVEARAAEQLTAGTSYALQLVKFRASQLASG
Ga0150985_10309069813300012212Avena Fatua RhizosphereMSSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAEQLRSGSSFVQQLIRFRGSQ
Ga0137370_1007863113300012285Vadose Zone SoilMNSFRKRLLVLIIGLGVVTQTVTLAAVLASTRRTVEARAAEQLRSGGSLAEQLIRFRAGQ
Ga0137387_1071615523300012349Vadose Zone SoilMGSFRKRLLVLIIGLGVVTQTVTLAAVLASTRRTVEARAAEQLRSGGSLAEQLMRFRAGQ
Ga0137384_1059190923300012357Vadose Zone SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHIVEGRAAQELRSGGSFAQQLIRFR
Ga0157306_1006736013300012912SoilVTSFRKRILVLIIGLIAVTQTVTLVAVLASMRRNVESRAADQLAAGSSYALQLVRFRAGQ
Ga0157297_1047153723300012914SoilVTSFRKRILVLIIGLIAVTQTVTLVAVLASTRRNVEARAAEQLAAGSSYALQLVKFRAG
Ga0137395_1003914653300012917Vadose Zone SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARAAEQLRSGGSLAEQLIGFRAGQLANGVAVLAA
Ga0137395_1030884413300012917Vadose Zone SoilMGSFRKRLLVLIIGLGVVTQTVTLAAVLVSTRHTVEARAAEQLRSGGAFAEHLIGF
Ga0137395_1078185723300012917Vadose Zone SoilMGSFRKRLLALIIGLVIVTQTVTLAAVLISTRRTVEARAAEQLRSGGSLAEQLIGFRAGQLANGVAVLAA
Ga0137407_1176457913300012930Vadose Zone SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLARTAHAVESRAAEELRSGGTFAQQLIRFRAGQLANGVGV
Ga0164308_1017901433300012985SoilMRSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARSWEQLRSGAGIADQLVRFRA
Ga0134081_1007019713300014150Grasslands SoilMGSFRKRLLVLIIGLSVVTQTVTLAAVLIGTRRTVEARAAEQLRSGGSLAEQLIGFRAGQLANGVAVL
Ga0173483_1028727623300015077SoilVTSFRKRILVLIIGLIAVTQTVTLVAVLASMRRNVESRAADQLAAGSSYALQLVRFRAGQLASGVS
Ga0167668_107636613300015193Glacier Forefield SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLVSTRRTVEARAAEQLRSGAALAEHLVRFRAGQ
Ga0137412_10006741113300015242Vadose Zone SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLARTAHDVEGRAADELRSGSSFAQQLIR
Ga0132257_10349037913300015373Arabidopsis RhizosphereMRSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARSWEQLRSGAGIADQLVRFRAGQLANGVAVL
Ga0132255_10139764133300015374Arabidopsis RhizosphereMGRFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEELRAGGTLAEHLIGFRAGQLANGVGVLA
Ga0182034_1005695413300016371SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGAALADNLIGFRAAQLANG
Ga0182034_1137634913300016371SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAERLRSGGTFVEQLIRFRAGQLANAVA
Ga0187785_1020569913300017947Tropical PeatlandMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEELRSGGALADHLIGFRAGQ
Ga0187779_1010582313300017959Tropical PeatlandMRSFRKRLLVLLIGLVIVTQTVTLAAVLASTRRTVEARSAEQLRAGNALAEQLIRFRATQLASGVA
Ga0187781_1053023613300017972Tropical PeatlandMGSFRKRLLVLIIGLGVVTQTVTLAAVLLSTRQTVEARAAEQLRSGGTLAEHLI
Ga0187769_1001829153300018086Tropical PeatlandMGSFRKRLLVLIIGLGVVTQTVTLAAVLASTRSTVEARAAEQLRSGGTLTEQL
Ga0210403_1153192523300020580SoilMGSFRRRLLVLIIGLITVVQTVTLAAVLASTAHDVQSRAAEELRSGGSFAQQLIRFRADQ
Ga0210404_1030929213300021088SoilMGDIFGRVMSSFRKRLLVLIIGLVAVTQTVTLAAVLVSTRHTVEARAAELLRSGGTLAEHLIGYRAGQLANGV
Ga0213874_1009909513300021377Plant RootsMRSFRKRLLVLIIGLVFLTQTVTLAAVLASVAHNVEARAADELRAGSSFAEQLLHFRAGQLANGVAVMAA
Ga0210385_1017509213300021402SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRSTVEARAAEQLRSGGTLAEQLIRF
Ga0210397_1081988223300021403SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGGTLADHLIGFRSGQLANAVAVLA
Ga0207695_1034092033300025913Corn RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHDVEGRAAGELRSGGSFAQQLIQFRAGQLANGVGVMAADFG
Ga0207695_1159282823300025913Corn RhizosphereMTSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVEARAAEQLRSGTSFVQQLIR
Ga0207694_1097862923300025924Corn RhizosphereMDSFRKRLLVLIIGLVVVTQTVTLTAVLASTAHTVQGRAAEELRSGGSFAQQLIRFRAGQLANGV
Ga0207700_1036701033300025928Corn, Switchgrass And Miscanthus RhizosphereMRSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARSWEQLRSGAGIADQLVRFRAGQLANGVAVLAADF
Ga0207665_1013737413300025939Corn, Switchgrass And Miscanthus RhizosphereMRSFRKRLLVLIIGLIVVTQTVTLAAVLASTRRTVEARSWEQLRAGAELADQLVSFRAGQLAN
Ga0207712_1073351423300025961Switchgrass RhizosphereMLAESESLSMGSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHNVESRAAEELRSGGSFAQ
Ga0207702_1131190813300026078Corn RhizosphereMGSFRKRLLVLIIGLVVVTQTVTLAAVLVSTAHDVEGRAAGELRSGGSFAQQLVQFRAG
Ga0209234_101688313300026295Grasslands SoilMGSFRKRLLVLIIGLGVVTQTVTLAAVLISTRRTVEARAAEQLRSGGSLAEQLIGFRAGQLANGVA
Ga0209158_117284013300026333SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARAAEQLRSGGSLAEQLIGF
Ga0209419_102803433300027537Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARAAEQLRSGGTFAEQLIRFRAGQLANGVA
Ga0209528_103411133300027610Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVETRAAEQLRSGGSLAEQLIRFRAGQ
Ga0209328_1022350723300027727Forest SoilMGSFRKRLLVLIIGLVVVTQTVTLAAVLASTAHTVEGRAAQELRSGGSFAEQLIRFRAGQLAN
Ga0209655_1016945823300027767Bog Forest SoilLLVLIIGLVIVTQTVTLAAVLVSTRRTVEARAAEQLRSGGTLAEHLIGFRAGHSHNADGA
Ga0209167_1055405113300027867Surface SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLVSTRGTVEERAKEQLGSGSSLAVQLLRYRAGELANGVSVTAAD
Ga0209275_1034697113300027884SoilEYMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRSTVEARAAEQLRSGGTLAEQLIRFRAAQLASAT
Ga0268264_1158077923300028381Switchgrass RhizosphereMNSFRNRLLVLIIGLIAVTQTVTLVAVLASTRRNVEARAVEQLAAGGSYALQLVQFRASQLAS
Ga0137415_1126732623300028536Vadose Zone SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTARTVEARAAEQLRSGGSFVVQLIRFRAGQLAN
Ga0222749_1055242323300029636SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRRTVEARAAEQLRSGGAFAEQLIRFRA
Ga0311339_1050905733300029999PalsaMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRSTVEARAAEQLRSGGTLAEQLIRFRAA
Ga0265760_1010595923300031090SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLMSTRRTVEARAALELRSGGTLAEHLIDFRAVQLEIGVGVLASVFGFR
Ga0170824_12496911533300031231Forest SoilMGSFRKRLLVLIIGLVAVTQTVTLAAVLASTAHNVESRAAQELRSGGSFAQQLIQFRADQLANGVGILAA
Ga0318528_1036827923300031561SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRRMVEARAAEQLRSGATLADNLIGFRASQLASGVALLA
Ga0318573_1003365443300031564SoilMNSFRNRLLVLIVGLVIVTQTVTFFAVAARTQRDVEARAAEQLRSGGSVVQQFMHIRSGQLAAAAAVLAGDFGLRS
Ga0318515_1050811413300031572SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGAALADNLIGF
Ga0318574_1061362613300031680SoilMARRIRAYVVGSFRNRLLALIIGLVVVTQTVTLIAVLARTSRDVQARAAGELRSGGSVVQQYIRARGSQLT
Ga0310686_10149311723300031708SoilMGSFRKRLLVLIIGLSVVTQTVTLAAVLISTRRTVEARAAEQLRSGAALAEHLIRFRAGQLA
Ga0318496_1001939513300031713SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRQTVEARAAEELRSGGTLAEHLIGFRAGQ
Ga0307469_1215815313300031720Hardwood Forest SoilMGSFRKRLLALLIGLVVVTQTVTLAAVLASTRRTVEARAAEQLRSGGSFAEHLIRFRAAQLANGVAV
Ga0318493_1057895213300031723SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGAALADNLIGFRAAQLA
Ga0307468_10115489613300031740Hardwood Forest SoilMGSFRKRLLALLIGLVVVTQTVTLAAVLASTRRTVEARAAEQLRSGGSFAEHLIRFRAAQLANG
Ga0318492_1076949623300031748SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGAALADNLIGFRAA
Ga0318492_1077175713300031748SoilMRSFRKRLLVLLIGLVIVTQTVTLAAVLVSTRHGVEARAAEQLRSGGALAEHLIEFRAAQLANG
Ga0318494_1064379723300031751SoilMGSFRNRLLVLIIGLVIVTETVTLAAVLISTRRTVEARAAEQMSSGAALAEHLIGFRASQLANGVA
Ga0318537_1009562813300031763SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRQTVEARAAEELRSGGTLAEHL
Ga0318567_1042651013300031821SoilMGSFRNRLLVLIIGLVIVTQFVTLAAVLLSTRRTVEARAAEELRSGGALADHLIGFR
Ga0318511_1008802013300031845SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRRMVEARAAEQLRSGATLADNLIGFRASQLASGVALLAAD
Ga0318511_1033767013300031845SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRETVATRAAEQLGSGSSLALQLM
Ga0318512_1026597113300031846SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRRMVEARAAEQLRSGATLADNLIGFRASQ
Ga0310913_1007794333300031945SoilMGSFRNRLLVLIIGLVIVTETVTLAAVLISTRRTVEARAAEQLRSGAALAEHLIGFRAGQLAN
Ga0307479_1019801513300031962Hardwood Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRGAVEQRAKEQLGSGASLALQLMRFRSGELANGVSATSAD
Ga0307479_1148878323300031962Hardwood Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRETVATRAAEQLGSGGSLALQLMRFRAGQLGSGVAVTAADFG
Ga0306922_1112096823300032001SoilMGRFRNRLLVLIIGLVIVTQTVTLAAVLISTHRMVETRAAEQLRSGATLADNLIGFRASQLAN
Ga0318562_1007466413300032008SoilMGRFRNRLLVLIIGLVIVTQTVTLAAVLISTRRTVEARAAEQLRSGGTLAEHL
Ga0318563_1033445513300032009SoilMARRIRAYVVGSFRNRLLALIIGLVVVTQTVTFIAVLARTSRDVQARAADELRSGGSVVQ
Ga0318563_1073045013300032009SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGAALADNLIGFRAAQLANGVA
Ga0318569_1010290733300032010SoilMGRFRNRLLVLIIGLVIVTQTVTLAAVLISTRRMVETRAAEQLRSGATLADNLIGFRASQLANGVA
Ga0318559_1037010323300032039SoilMGSFRNRLLVLIIGLVIVTETVTLAAVLISTRRTVEARAAEQMRSGAALAEHLIGFRASQLANG
Ga0318558_1031281423300032044SoilMGSFRNRLLVLIIGLVIVTETVTLAAVLISTRRTVEARAAEQMRSGAALAEHLIGFRASQLANGV
Ga0318510_1001438843300032064SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLISTRRTVEARAAEQLRSGGALADNLIGFR
Ga0318524_1007233713300032067SoilMGRFRNRLLVLIIGLVIVTQTVTLAAVLISTRRMVETRAAEQLRSGATLADNLIGFR
Ga0318518_1004706413300032090SoilMGSFRNRLLVLIIGLVIVTQTVTLAAVLLSTRRTVEARAAEQLRSGAALADNLIGFRAAQLANGVALL
Ga0315912_1164632613300032157SoilMQSFRNRLLVLIIGLIAVTQTVTVVAVLASARRNVEARAAEQLAAGGSYALQMLQFRA
Ga0307471_10108310113300032180Hardwood Forest SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRGTVEERAKEELGSGASLALQLMRFRAG
Ga0306920_10237939623300032261SoilMGSFRKRLLVLIIGLSVVTQTVTLAAVLISTRQTVQARAAEELRSGGTLAEHLIGYRA
Ga0335079_1162332013300032783SoilMRSFRKRLLLLIVGLIVVTQTVTLSAVLASTRQTVQTRSWEQLRADAALAEQQMHFRAAQLANGVT
Ga0335078_1019657243300032805SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRGTVRARAAEQLSQGAALALQLTRFRAGQ
Ga0335071_1034797413300032897SoilMGSFRKRLLVLIIGLVIVTQTVTLAAVLASTRGTVENRARKDLADGGSLALKLMRLRTSQLTSAV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.