Metagenome / Metatranscriptome Family F065757

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065757
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	68 residues
Representative Sequence	MKDVWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVVTAVMVLAFAFAVVGHGRKDSAPPEDDDEQG
Number of Associated Samples	97
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.46 %
% of genes near scaffold ends (potentially truncated)	31.50 %
% of genes from short scaffolds (< 2000 bps)	81.89 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.039 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.748 % of family members)
Environment Ontology (ENVO)	Unclassified (31.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.520 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.06% β-sheet: 0.00% Coil/Unstructured: 48.94%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00528	BPD_transp_1	21.26
PF01565	FAD_binding_4	16.54
PF00588	SpoU_methylase	6.30
PF03992	ABM	4.72
PF08241	Methyltransf_11	4.72
PF04073	tRNA_edit	4.72
PF02873	MurB_C	2.36
PF00300	His_Phos_1	2.36
PF13649	Methyltransf_25	1.57
PF01266	DAO	1.57
PF09338	Gly_reductase	0.79
PF01479	S4	0.79
PF06475	Glycolipid_bind	0.79
PF13416	SBP_bac_8	0.79
PF01547	SBP_bac_1	0.79
PF00990	GGDEF	0.79
PF00691	OmpA	0.79
PF07813	LTXXQ	0.79
PF10397	ADSL_C	0.79
PF03458	Gly_transporter	0.79
PF00005	ABC_tran	0.79
PF00270	DEAD	0.79
PF00908	dTDP_sugar_isom	0.79
PF03480	DctP	0.79
PF13801	Metal_resist	0.79
PF08494	DEAD_assoc	0.79
PF04055	Radical_SAM	0.79
PF00583	Acetyltransf_1	0.79
PF13847	Methyltransf_31	0.79
PF13561	adh_short_C2	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	6.30
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	6.30
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	6.30
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.15
COG0812	UDP-N-acetylenolpyruvoylglucosamine reductase	Cell wall/membrane/envelope biogenesis [M]	2.36
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	0.79
COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	0.79
COG3554	Uncharacterized conserved protein	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.04 %
Unclassified	root	N/A	14.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.04 %
Unclassified	root	N/A	14.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.04 %
Unclassified	root	N/A	14.96 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	25.98 %
Unclassified	root	N/A	14.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	25.98 %
Unclassified	root	N/A	14.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.15 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.79 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	25.98 %
Unclassified	root	N/A	14.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.15 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.79 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	22.83 %
Unclassified	root	N/A	14.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.15 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Thermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	22.05 %
Unclassified	root	N/A	14.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.15 %
Thermaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	0.79 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	22.05 %
Unclassified	root	N/A	14.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.15 %
Calidithermus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Calidithermus	0.79 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004479\|Ga0062595_100474943	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300004633\|Ga0066395_10203636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1037	Open in IMG/M
3300005093\|Ga0062594_101987064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	621	Open in IMG/M
3300005183\|Ga0068993_10063602	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300005332\|Ga0066388_101242772	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300005332\|Ga0066388_101480903	Not Available	1186	Open in IMG/M
3300005332\|Ga0066388_103247663	Not Available	831	Open in IMG/M
3300005332\|Ga0066388_103347214	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	819	Open in IMG/M
3300005332\|Ga0066388_104046615	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005332\|Ga0066388_106558819	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005340\|Ga0070689_101176573	Not Available	687	Open in IMG/M
3300005438\|Ga0070701_11401799	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300005440\|Ga0070705_100411096	Not Available	1005	Open in IMG/M
3300005444\|Ga0070694_101920565	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005445\|Ga0070708_100284308	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300005467\|Ga0070706_100007290	All Organisms → cellular organisms → Bacteria	10384	Open in IMG/M
3300005468\|Ga0070707_100000242	All Organisms → cellular organisms → Bacteria → Proteobacteria	54381	Open in IMG/M
3300005468\|Ga0070707_100251184	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300005536\|Ga0070697_101072935	Not Available	716	Open in IMG/M
3300005552\|Ga0066701_10819704	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005558\|Ga0066698_10756080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	634	Open in IMG/M
3300005713\|Ga0066905_100785108	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300005718\|Ga0068866_10199792	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1194	Open in IMG/M
3300005764\|Ga0066903_100039343	All Organisms → cellular organisms → Bacteria	5548	Open in IMG/M
3300005764\|Ga0066903_100128186	All Organisms → cellular organisms → Bacteria	3557	Open in IMG/M
3300005764\|Ga0066903_100181727	All Organisms → cellular organisms → Bacteria → Proteobacteria	3103	Open in IMG/M
3300005764\|Ga0066903_100234729	All Organisms → cellular organisms → Bacteria	2803	Open in IMG/M
3300005764\|Ga0066903_102956315	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	921	Open in IMG/M
3300005764\|Ga0066903_108266218	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005841\|Ga0068863_100956879	Not Available	858	Open in IMG/M
3300005843\|Ga0068860_101115972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	808	Open in IMG/M
3300006034\|Ga0066656_11003149	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300006575\|Ga0074053_11587402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300006844\|Ga0075428_100164479	All Organisms → cellular organisms → Bacteria	2407	Open in IMG/M
3300006904\|Ga0075424_101397554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	744	Open in IMG/M
3300007004\|Ga0079218_10603821	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300009038\|Ga0099829_10740927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Calidithermus	816	Open in IMG/M
3300009038\|Ga0099829_11261622	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300009087\|Ga0105107_10916987	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009088\|Ga0099830_10312910	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300009088\|Ga0099830_11197039	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300009089\|Ga0099828_10226431	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300009089\|Ga0099828_10513370	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300009089\|Ga0099828_10681692	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300009089\|Ga0099828_11245909	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300009090\|Ga0099827_10000067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31762	Open in IMG/M
3300009098\|Ga0105245_11432759	Not Available	741	Open in IMG/M
3300009157\|Ga0105092_10485715	Not Available	707	Open in IMG/M
3300009162\|Ga0075423_10627153	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1133	Open in IMG/M
3300009177\|Ga0105248_10366616	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300009792\|Ga0126374_10306534	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1067	Open in IMG/M
3300010046\|Ga0126384_10518804	All Organisms → cellular organisms → Bacteria → Proteobacteria	1030	Open in IMG/M
3300010046\|Ga0126384_10932513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	786	Open in IMG/M
3300010047\|Ga0126382_11467788	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300010048\|Ga0126373_10477743	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300010323\|Ga0134086_10306529	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300010362\|Ga0126377_10280213	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300010366\|Ga0126379_11445761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	793	Open in IMG/M
3300010391\|Ga0136847_12442253	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300010398\|Ga0126383_10681853	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300010400\|Ga0134122_11421412	Not Available	709	Open in IMG/M
3300012189\|Ga0137388_11432929	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300012204\|Ga0137374_10002030	All Organisms → cellular organisms → Bacteria	23744	Open in IMG/M
3300012204\|Ga0137374_10006264	All Organisms → cellular organisms → Bacteria → Proteobacteria	14153	Open in IMG/M
3300012353\|Ga0137367_10024735	All Organisms → cellular organisms → Bacteria → Proteobacteria	4670	Open in IMG/M
3300012355\|Ga0137369_10191190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1591	Open in IMG/M
3300012355\|Ga0137369_10456997	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300012360\|Ga0137375_10500778	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300012360\|Ga0137375_10989399	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	662	Open in IMG/M
3300012363\|Ga0137390_10625214	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300012363\|Ga0137390_11193183	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	708	Open in IMG/M
3300012899\|Ga0157299_10170008	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300012931\|Ga0153915_10853295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1057	Open in IMG/M
3300012948\|Ga0126375_11349806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	602	Open in IMG/M
3300012948\|Ga0126375_11919102	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300014269\|Ga0075302_1060084	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300014968\|Ga0157379_10498987	Not Available	1128	Open in IMG/M
3300015259\|Ga0180085_1081640	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	944	Open in IMG/M
3300015371\|Ga0132258_10752734	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300015373\|Ga0132257_102209639	Not Available	712	Open in IMG/M
3300017659\|Ga0134083_10196175	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300017959\|Ga0187779_10463953	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300017966\|Ga0187776_11357876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300017974\|Ga0187777_10239082	All Organisms → cellular organisms → Bacteria → Proteobacteria	1230	Open in IMG/M
3300018000\|Ga0184604_10088430	Not Available	939	Open in IMG/M
3300018058\|Ga0187766_10001484	All Organisms → cellular organisms → Bacteria	13743	Open in IMG/M
3300018422\|Ga0190265_10422874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1434	Open in IMG/M
3300019229\|Ga0180116_1324404	Not Available	582	Open in IMG/M
3300019249\|Ga0184648_1366048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300019360\|Ga0187894_10002822	All Organisms → cellular organisms → Bacteria → Proteobacteria	20343	Open in IMG/M
3300019362\|Ga0173479_10847601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300021090\|Ga0210377_10043702	All Organisms → cellular organisms → Bacteria	3132	Open in IMG/M
3300021560\|Ga0126371_10086600	All Organisms → cellular organisms → Bacteria	3087	Open in IMG/M
3300021560\|Ga0126371_11080931	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300025885\|Ga0207653_10412456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300025900\|Ga0207710_10208603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	967	Open in IMG/M
3300025910\|Ga0207684_10003602	All Organisms → cellular organisms → Bacteria	15077	Open in IMG/M
3300025910\|Ga0207684_10877824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	755	Open in IMG/M
3300025910\|Ga0207684_11278191	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300025910\|Ga0207684_11352882	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300025922\|Ga0207646_10000929	All Organisms → cellular organisms → Bacteria	37739	Open in IMG/M
3300025923\|Ga0207681_10271686	Not Available	1331	Open in IMG/M
3300026035\|Ga0207703_11768665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300026075\|Ga0207708_11976558	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300026088\|Ga0207641_10859977	Not Available	899	Open in IMG/M
3300026089\|Ga0207648_10343544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1344	Open in IMG/M
3300026089\|Ga0207648_10536196	Not Available	1074	Open in IMG/M
3300027562\|Ga0209735_1120498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300027821\|Ga0209811_10242512	Not Available	687	Open in IMG/M
3300027882\|Ga0209590_10039727	All Organisms → cellular organisms → Bacteria	2554	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10112134	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300031720\|Ga0307469_10166127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1676	Open in IMG/M
3300031740\|Ga0307468_101011598	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	732	Open in IMG/M
3300031820\|Ga0307473_11227649	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	558	Open in IMG/M
3300031949\|Ga0214473_10072398	All Organisms → cellular organisms → Bacteria	4030	Open in IMG/M
3300031949\|Ga0214473_11115845	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300031954\|Ga0306926_12936296	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300032174\|Ga0307470_10155506	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300032174\|Ga0307470_11224166	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300032205\|Ga0307472_101699398	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300033004\|Ga0335084_10606189	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1120	Open in IMG/M
3300033158\|Ga0335077_10003075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	20024	Open in IMG/M
3300033158\|Ga0335077_10099761	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300033433\|Ga0326726_10390939	All Organisms → cellular organisms → Bacteria → Proteobacteria	1318	Open in IMG/M
3300033814\|Ga0364930_0103432	Not Available	973	Open in IMG/M
3300034177\|Ga0364932_0113407	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.61%
Host-Associated	Host-Associated	13.39%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.74%
Plants	Host-Associated → Plants	13.39%
Aquatic	Environmental → Aquatic	7.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.30%
Freshwater	Environmental → Aquatic → Freshwater	5.51%
Sediment	Environmental → Aquatic → Sediment	1.57%
Floodplain	Environmental → Terrestrial → Floodplain	1.57%
Marine	Environmental → Aquatic → Marine	0.79%
Peat	Environmental → Terrestrial → Peat	0.79%
Cave	Environmental → Terrestrial → Cave	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.09%
Loam	Environmental → Terrestrial → Soil → Loam	24.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.30%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.51%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.79%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.79%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.51%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.57%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.57%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.51%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.15%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.79%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.79%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062595_1004749433	3300004479	Soil	MKDVWIAAAGFALGWLVSKTWNDPGCQAGLVVFALATAAMGLAFALAVVGHGRPPAP
Ga0066395_102036362	3300004633	Tropical Forest Soil	MKDVWIAGAGIVFGWLMSKTFDDPGCRLGLVLFLVLSAVMLLVFALAVVGHGREAPAPPDDEEDEDDERSG*
Ga0062594_1019870642	3300005093	Soil	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEPSPEDDDEDGSRPA*
Ga0068993_100636022	3300005183	Natural And Restored Wetlands	MGRGVEMKDVLIAAAGFVLGWLMSKTWQDPACRGGLVLFVVLTAVMALAFAFAVVGHGGSRHAPPEDGPDDG*
Ga0066388_1012427722	3300005332	Tropical Forest Soil	MESGVKMKDVLIAGAGFVLGWLMSKTWQDPGCRVGLAMFLVLTAVMALAFAFAVVGHGRAATPPPPEDDGDDR*
Ga0066388_1014809034	3300005332	Tropical Forest Soil	FGWLMSKAWSDPGCQVGLVLFLVATAAMALAFAFAVVGHGRKDPEVDAALEDDDKPPDPGPR*
Ga0066388_1032476632	3300005332	Tropical Forest Soil	MKDVWIAGAGIVFGWLMSKAWSDPGCQVGLVLFLVATAAVALAFAFAVVGHGRKDLEVDAAVEDDDKPP
Ga0066388_1033472142	3300005332	Tropical Forest Soil	FALGWLMSKTWQDPGCRAGLVMFLVVTAVLVLAFALAVVGHRVPVDDPEDEHDAD*
Ga0066388_1040466152	3300005332	Tropical Forest Soil	MKRDAWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVITAAMVLTFAFAVSGHGRQGGPPPDEDDGEG*
Ga0066388_1065588191	3300005332	Tropical Forest Soil	AMKDVWIAGAGIVFGWLMGKTWDDPGCRLGLAMFLVLSAAVVLTFAFAVVGHGRKDDPPPEDDETDEER*
Ga0070689_1011765731	3300005340	Switchgrass Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDSSRPA*
Ga0070701_114017991	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEARPEDDDEDSSRPA*
Ga0070705_1004110961	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDGSRPA*
Ga0070694_1019205651	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEARPEDDDEDGSRPV*
Ga0070708_1002843082	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLWIATAGFVLGWLTSKTWQDPGCRLGLVVFLVVTAVMLLAFVLAVVGHRRPADPEHDEEHDAD*
Ga0070706_1000072907	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL*
Ga0070707_10000024231	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMVLTFALAVVGHGRQAPAPPDDADEDTRL*
Ga0070707_1002511843	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLWIATAGFVLGWLTSKTWQDPGCRLGLVVFLVVTAVMLLAFVLAVVGHRRPADPEHD
Ga0070697_1010729351	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEALPEDDDEDGSRPA*
Ga0066701_108197042	3300005552	Soil	IETGVKMKDVWIATAGFVLGWLMSKTWQDPGCRVGLVVFLVVTAVMALAFALAVVGHRRPGETPPEDDGE*
Ga0066698_107560802	3300005558	Soil	WIATAGFVLGWLMSKTWQDPGCRVGLVVFLVVTAVMALAFALAVVGHRRPGETPPEDDGE
Ga0066905_1007851082	3300005713	Tropical Forest Soil	MKDVWIAGAGIVFGWLMGKTWDDPGCRLGLAMFLVLSAAVVLTFAFAVVGHGRKDDPPPEDDETDEER*
Ga0068866_101997923	3300005718	Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEAHPEDDDED
Ga0066903_1000393432	3300005764	Tropical Forest Soil	MKDIWIAAAGFVLGWLMSKTWQDPGCRIGLVVLAVVGAIMVLAFALAVVGHGRPTDPPEEEERDRD*
Ga0066903_1001281865	3300005764	Tropical Forest Soil	MKDVWMVAAGFVLGWLMSKTWQDPGCRLGLAVLAVVGAVMILAFALAVVGHGRRVDPPEEEEHDGE*
Ga0066903_1001817273	3300005764	Tropical Forest Soil	MKDVWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVVTAVMVLTFALAVVGHGRQDEPPPDEDEDEPEER*
Ga0066903_1002347293	3300005764	Tropical Forest Soil	MNHARIPSGAVVSMKDVWIAAAGFALGWLMSKTWQDPGCRAGLVMFLVVTAVLVLAFALAVVGHRVPVDDPEDEHDAD*
Ga0066903_1029563152	3300005764	Tropical Forest Soil	MKDVWIAAAGFVLGWLMSKTWQDPGCRLGLVVLAVVGGVMLLVFALAVVGHGRPIDPPEEEEHDGE*
Ga0066903_1082662182	3300005764	Tropical Forest Soil	MKDVWMAAAGFVFGWLMSKTWQDPGCRLGLVVFLVATAGMLLAFVLAIAGHRRPVESSHEDDNDGD*
Ga0068863_1009568792	3300005841	Switchgrass Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKEPEALPEDDDEDGPRPA*
Ga0068860_1011159721	3300005843	Switchgrass Rhizosphere	AIIGHGVKMKDVWIAAAGFALGWLMSKTWQDPACRIGLVLFLVITTIMALVFALAVVGHGRSTPTPPDDDSPDA*
Ga0066656_110031492	3300006034	Soil	IATAGFVLGWLMSKTWQDPGCRVGLVVFLVVTAVMALAFALAVVGHRRPGEAPPEDDGE*
Ga0074053_115874022	3300006575	Soil	MRDVVIAGAGIVFGWLMSKTWNDPACQVGLMLFLVVTAVMALAFAFMVVGHGRKDPEALPEDDDEDGSRPA*
Ga0075428_1001644793	3300006844	Populus Rhizosphere	MKDVWIAAAGFALGWLMSKTWQDPACRIGLVLFLVITTIMALVFALAVVGHGRSTPTPPDDDSPDA*
Ga0075424_1013975541	3300006904	Populus Rhizosphere	KDVWIAAAGFALGWLMSKTWQDPGCRFGLALLLIMTTVMVLAFVLAVVGHGRSTPTPPDDDSPDA*
Ga0079218_106038212	3300007004	Agricultural Soil	MRDVVIAGAGIAFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEVLPEDDDEEGSRPA*
Ga0099829_107409272	3300009038	Vadose Zone Soil	MAAVSFLPGGLAMKDIWLAGAGIVFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL*
Ga0099829_112616222	3300009038	Vadose Zone Soil	MKDIWIATAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMALTFVLAVVGHRRPAEAPPHDDRE*
Ga0105107_109169872	3300009087	Freshwater Sediment	MKEVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMGLAFAFAVVGHGRKDPEALPEDDDEDGSRPA*
Ga0099830_103129103	3300009088	Vadose Zone Soil	MAAVSFLPGGLAMKDVWLAGAGIVFGWLMSKSWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL*
Ga0099830_111970392	3300009088	Vadose Zone Soil	MKDIWIATAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMALTFVLAVVGHRRPAEAPPDDDRE*
Ga0099828_102264313	3300009089	Vadose Zone Soil	MAAVSFLPGGLAMKDIWLAGAGIVFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPP
Ga0099828_105133703	3300009089	Vadose Zone Soil	MAAVSFLPGGLAMKDVWLAGAGIVFGWLMSKSWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDA
Ga0099828_106816922	3300009089	Vadose Zone Soil	MKDIWIATAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMALTFVLAVVGHRRPGEAPPEDDGE*
Ga0099828_112459091	3300009089	Vadose Zone Soil	MKDVGIASAGFVLGWLLSKTWHDPGCQVGLVMFLVVTAAMGLAFALAIVGHRRPADPSPEDESDAESDRCDPK*
Ga0099827_100000672	3300009090	Vadose Zone Soil	MAAVSFLPGGLAMKDIWLAGAGIVFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAASPPDDADEDTRL*
Ga0105245_114327592	3300009098	Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEAHPEDDDEDGSRPA*
Ga0105092_104857151	3300009157	Freshwater Sediment	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGREDPEASPDDDDEDGSRP
Ga0075423_106271532	3300009162	Populus Rhizosphere	MKDVWIATAGFVFGWLMSKTWHDPGCRAGLVVFLVVTAVMALAFALAIVGHRRPVDPPDEEEQDGR*
Ga0105248_103666163	3300009177	Switchgrass Rhizosphere	RDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKEPEALPEDDDEDGPRPA*
Ga0126374_103065342	3300009792	Tropical Forest Soil	MKRDAWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVITAAMVLTFALAVSGHGRRDGPPPDEDDGEG*
Ga0126384_105188042	3300010046	Tropical Forest Soil	MKDVWIAGAGIVFGWLIGKTWDDPGCRLGMALFLVLSAVMVLTFALAVVGHGRKDDPPPDDDEADEER*
Ga0126384_109325131	3300010046	Tropical Forest Soil	MKDIWIAAAGFALGWLMSKTWQDPACRLGLVLFLIITTVMALVFALAVVGHGRSTSTPPD
Ga0126382_114677882	3300010047	Tropical Forest Soil	MKDVWIAGAGIVFGWLMGKTWDDPGCRLGLAMFLVLSAAVVLTFAFAVVGHGRKDDPPPEDDET
Ga0126373_104777432	3300010048	Tropical Forest Soil	MESGVKMKDVLIAGAGFVLGWLMSKTWQDPGCRVGLAMFLVLTAVMALAFAFAVVGHGRAASPPPPEDDADDR*
Ga0134086_103065291	3300010323	Grasslands Soil	GFVFGWLMSKTWDDPGCRLGLVLFLVVTAVMVLTFAFAIAGHGRTDSEPPPDEDDEDR*
Ga0126377_102802132	3300010362	Tropical Forest Soil	MKDIWIAAAGFALGWLMSKTWQDPACRLGLVLFLIITTVMALVFALAVVGHGRSTSTPPDDDGPDA*
Ga0126379_114457612	3300010366	Tropical Forest Soil	MKDIWIAAAGFALGWLMSKTWQDPGCRIGLVLFLVITTVMALVFALAVVGHGRST
Ga0136847_124422533	3300010391	Freshwater Sediment	MKDVLVAGAAFVFGWLMSKTWQDPGCQLGLTIFLVLTAVMGLTFALAVVGHGRPDPASPDDADEDTRL*
Ga0126383_106818532	3300010398	Tropical Forest Soil	MKDIWIAAAGFALGWLMSKTWQDPGCRIGLVLFLVITTVMALVFALAVVGHGRSTPPDDDSPDA*
Ga0134122_114214122	3300010400	Terrestrial Soil	MMVPGGTVMRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKEPEALPEDDDEDGSRPA*
Ga0137388_114329292	3300012189	Vadose Zone Soil	VGIARAGFVLGWLLSKTWHDPGCQVGLVMFLVVTAAMGLAFALAIVGHRRPADPSPEDESDAESDRCDPK*
Ga0137374_100020305	3300012204	Vadose Zone Soil	MKDVWIAAAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMALGFALAVVGHRRTADSPPEDDSDGD*
Ga0137374_1000626417	3300012204	Vadose Zone Soil	PGGLAMKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPEAPDDSDEGTRL*
Ga0137367_100247354	3300012353	Vadose Zone Soil	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPEAPDDSDEGTRL*
Ga0137369_101911903	3300012355	Vadose Zone Soil	MKDVWIAAAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMALGFALAVVGHRRTVDSPPEDDSDGD*
Ga0137369_104569971	3300012355	Vadose Zone Soil	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPEAPDDSDE
Ga0137375_105007782	3300012360	Vadose Zone Soil	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPEAPDDSDEDTRL*
Ga0137375_109893992	3300012360	Vadose Zone Soil	MKEVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALVFAFAVVGHGRKDPEARSEDDDEDGSGPA*
Ga0137390_106252141	3300012363	Vadose Zone Soil	MKDIWIATAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMALTFVLAVVGHRRPAEAPPDDDR
Ga0137390_111931832	3300012363	Vadose Zone Soil	MKDLWIATAGFVLGWLTSKTWQDPGCRLGLVVFLVVTAVMLLAFVLAVVGHRRPADPEDDEEHDAD*
Ga0157299_101700082	3300012899	Soil	RDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDSSRPA*
Ga0153915_108532952	3300012931	Freshwater Wetlands	MAMRDAWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVLAAVMALAFALAVVGHGRPDPAPPDAEDDDEEG*
Ga0126375_113498062	3300012948	Tropical Forest Soil	MKDVWMVAAGFVFGWLMSKTWQDPGCRLGLVVFLVVTAAMLLAFVLAVVGGGSAMNAADEEERDPD*
Ga0126375_119191022	3300012948	Tropical Forest Soil	MKDIWIAAAGFALGWLMSKTWQDPGCRIGLVLFLVITTVMALVFALAVVGHGRSTSTPPDDEGPDA*
Ga0075302_10600842	3300014269	Natural And Restored Wetlands	MKDIWMVTAGFVLGWLLSKTWDDPGCRVGMVIWVVVTAAMALTFALAVVGHGRQPDPRPEDDDDE*
Ga0157379_104989872	3300014968	Switchgrass Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEVLPEDDDEDGSRPA*
Ga0180085_10816401	3300015259	Soil	MKDVWIATAGFVLGWLMSKTWQDPGCRLGLVLFLVVTAIMVLIFAFAVVGGGSAGGSPDEEERD
Ga0132258_107527341	3300015371	Arabidopsis Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFMVVGHGRKDPEALPEDDDEDGSRPA*
Ga0132257_1022096392	3300015373	Arabidopsis Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFMVVGHGRKDPEALPEDDD
Ga0134083_101961751	3300017659	Grasslands Soil	MKDIWIATAGFVLGWLMSKTWQDPGCRVGLVVFLVVTAVMALAFALAVVGHRRPGETPPEDDGE
Ga0187779_104639532	3300017959	Tropical Peatland	MREAGIAGAGFVLGWLMSKTWQDPGCRVGLVLFVVLTAVMALTFAFAVVGHGRSAPRPPEEGGDDT
Ga0187776_113578762	3300017966	Tropical Peatland	MKDVWIATASFVLGWLMSKTWQDPGCRVGLAVFLVVTAVMALAFAFAVVGHGRAAGPPPPQDDTDDR
Ga0187777_102390822	3300017974	Tropical Peatland	MRDVWIATFGFVFGWLMSKTWQDPACRTGLALFVVLAAILVLVFALAVVGHRAPIDDPEDERDGD
Ga0184604_100884302	3300018000	Groundwater Sediment	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDGSRPA
Ga0187766_100014843	3300018058	Tropical Peatland	MKDVWIAAAGFVLGWLMSKTWQDPGCRVGLAVFLVATAAMGLAFVLSVVGHGRPPDSPPEDGPEQD
Ga0190265_104228742	3300018422	Soil	MREAWIAGAGIVFGWLMSKTWHDPGCRVGLAIFLAVTAVLALTFALAVVGHGRKDEPVPDEDEDDTARG
Ga0180116_13244041	3300019229	Groundwater Sediment	MKEVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEARPEDDDEDGSRPA
Ga0184648_13660481	3300019249	Groundwater Sediment	MMVPGGTVMRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEA
Ga0187894_100028227	3300019360	Microbial Mat On Rocks	VKDVWIAGAGIVFGWLMSKTWDDPGCRLGLVIFLVVTAVLVLTFALAVVGHGRQDVSPPEDNGDEERPDRREPR
Ga0173479_108476011	3300019362	Soil	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEARPEDDDEDSSRPA
Ga0210377_100437024	3300021090	Groundwater Sediment	MKEAWIAAAGFVLGWLMSKTWQDPGCRLGLVVFLVVTAVMVLIFALAVVGGGSAGGSPDEEERDSD
Ga0126371_100866002	3300021560	Tropical Forest Soil	MNHARIPSGAVVSMKDVWIAAAGFALGWLMSKTWQDPGCRAGLVMFLVVTAVLVLAFALAVVGHRVPVDDPEDEHDAD
Ga0126371_110809312	3300021560	Tropical Forest Soil	MESGVKMKDVLIAGAGFVLGWLMSKTWQDPGCRVGLAMFLVLTAVMALAFAFAVVGHGRAASPPPPEDDADDR
Ga0207653_104124562	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDSSRPA
Ga0207710_102086031	3300025900	Switchgrass Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKEPEALPEDDDEDGPRPA
Ga0207684_100036023	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL
Ga0207684_108778242	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLWIATAGFVLGWLTSKTWQDPGCRLGLVVFLVVTAVMLLAFVLAVVGHRRPADPEHDEEHDAD
Ga0207684_112781911	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVWLAGAGIVFGWLMSKSWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL
Ga0207684_113528821	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDED
Ga0207646_1000092921	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVWLAGAGIAFGWLMSKTWQDPGCQIGLTIFLVLTALMVLTFALAVVGHGRQAPAPPDDADEDTRL
Ga0207681_102716862	3300025923	Switchgrass Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEARPEDDDEDSPRPA
Ga0207703_117686652	3300026035	Switchgrass Rhizosphere	IVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEPSPEDDDEDGSRP
Ga0207708_119765581	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	DVWIAAAGFALGWLMSKTWQDPACRIGLVLFLVITTIMALVFALAVVGHGRSTPTPPDDDSPDA
Ga0207641_108599772	3300026088	Switchgrass Rhizosphere	MMVPGGAIMRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKEPEALPEDDDEDGPRPA
Ga0207648_103435441	3300026089	Miscanthus Rhizosphere	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEARPEDDD
Ga0207648_105361961	3300026089	Miscanthus Rhizosphere	GIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDGSRPA
Ga0209735_11204982	3300027562	Forest Soil	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEAQS
Ga0209811_102425121	3300027821	Surface Soil	MMVPGGTVMRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFAVVGHGRKDPEVLPEEDDD
Ga0209590_100397273	3300027882	Vadose Zone Soil	MKDIWLAGAGIVFGWLMTKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL
(restricted) Ga0255310_101121341	3300031197	Sandy Soil	MKDVWLAGAGIVFGWLMSKTWQDPGCQIGLTIFLVLTALMALTFALAVVGHGRQAPAPPDDADEDTRL
Ga0307469_101661273	3300031720	Hardwood Forest Soil	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLVLFLVVTAVMALAFAFAVVGHGRKDPEASPEDDDEDGSRPT
Ga0307468_1010115981	3300031740	Hardwood Forest Soil	GFPMKDVSIATAGFALGWLMSKTWQDPGCRVGLALFLVVTAVLVLAFAFAVVGHRAPVDDREDERDAD
Ga0307473_112276492	3300031820	Hardwood Forest Soil	MKDVSIATAGFALGWLMSKTWQDPGCRAGLALFLVVTAVLVLAFAFAVVGHRAPVDDREDERDAD
Ga0214473_100723982	3300031949	Soil	MKDVWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVVTAVMVLAFAFAVVGHGRKDSAPPEDDDEQG
Ga0214473_111158452	3300031949	Soil	MKDVWIAGAGIVFGWLMSKTWDDPGCRLGLVLFLVVTAVMALTFALAVVGHGRKDAAPPDEDDEQD
Ga0306926_129362961	3300031954	Soil	WIAAAGFALGWLMSKTWQDPACRIGLVLFLVITTVMALVFALAVVGHGRSTPTPPDDDSPDA
Ga0307470_101555062	3300032174	Hardwood Forest Soil	MRDVVIAGAGIVFGWLMSKTWSDPACQVGLMLFLVVTAVMALAFAFMVVGHGRKDPEALPEDDDEDGSRPA
Ga0307470_112241661	3300032174	Hardwood Forest Soil	AGAGIVFGWLMSKTWSDPGCQVGLMLFLVVTAVMALAFAFAVVGHGRKDPDIEAPPEEDEEDPPVPGPR
Ga0307471_1022054372	3300032180	Hardwood Forest Soil	AAAAFVLGWLVSKTWQDPACRVGLALFVVLTAVMGLAFAFAVVGHGRATSTPPDDGNNDA
Ga0307472_1016993982	3300032205	Hardwood Forest Soil	MKDVSIATAGFALGWLMSKTWQDPGCRAGLAVFLVVTAVLVLAFAFAVVGHRAPVDDREDERDAD
Ga0335084_106061891	3300033004	Soil	MKDIWMVTAGFVLGWLLSKTWDDPSCRAGMVIWIVVTAAMALTFALAVVGHGRPPDPRPEDDDDE
Ga0335077_1000307517	3300033158	Soil	MREAGIAGAGFVLGWLMSKTWQDPGCRVGLVLFVVLTAVMALTFAFAVVGHGRSAPRPPEEDGDDT
Ga0335077_100997614	3300033158	Soil	MKDVWIATAGFALGWLMSKTWQDPGCRAGLVMFLIVTAALVLAFALAVVGHRAPVDDPEDERDAD
Ga0326726_103909391	3300033433	Peat Soil	MKDVWIAGAGIVFGWLMGKTWDDPGCRLGLALFLVLSAAMVLVFALAVVGHGRKDEPPTDGDDEGDPEP
Ga0364930_0103432_92_298	3300033814	Sediment	MKDVLVAGAAFVFGWLMSKTWQDPGCRLGLTIFLVLTAVMGLTFALAVVGHGRPDPASPDDADEDTRL
Ga0364932_0113407_833_1030	3300034177	Sediment	MKDVLVAGAAFVFGWLMSKTWQDPGCRLGLTIFLVLTAVMGLTFALAVVGHGRPDPASPDDADEDT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters