Metagenome / Metatranscriptome Family F065601

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065601
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	66 residues
Representative Sequence	MKLDQGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEF
Number of Associated Samples	96
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	8.26 %
% of genes near scaffold ends (potentially truncated)	94.49 %
% of genes from short scaffolds (< 2000 bps)	84.25 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (69.291 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (34.646 % of family members)
Environment Ontology (ENVO)	Unclassified (58.268 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.992 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.88% β-sheet: 20.59% Coil/Unstructured: 48.53%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF14117	DUF4287	11.02
PF01872	RibD_C	5.51
PF01274	Malate_synthase	3.94
PF00583	Acetyltransf_1	3.15
PF04185	Phosphoesterase	3.15
PF08818	DUF1801	2.36
PF16916	ZT_dimer	2.36
PF01243	Putative_PNPOx	0.79
PF00561	Abhydrolase_1	0.79
PF08423	Rad51	0.79
PF00903	Glyoxalase	0.79
PF12681	Glyoxalase_2	0.79
PF00211	Guanylate_cyc	0.79
PF04439	Adenyl_transf	0.79
PF00132	Hexapep	0.79
PF00463	ICL	0.79
PF06983	3-dmu-9_3-mt	0.79
PF13460	NAD_binding_10	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	5.51
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	5.51
COG2225	Malate synthase	Energy production and conversion [C]	3.94
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	3.15
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	2.36
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	2.36
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	2.36
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.79
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.79
COG2224	Isocitrate lyase	Energy production and conversion [C]	0.79
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.79
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.31 %
Unclassified	root	N/A	19.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.74 %
Unclassified	root	N/A	19.69 %
Viruses	superkingdom	All Organisms → Viruses	1.57 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	69.29 %
Unclassified	root	N/A	19.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.69 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	5.51 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.57 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.69 %
archaeon 13_2_20CM_2_52_21	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	4.72 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.57 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.69 %
archaeon 13_2_20CM_2_52_21	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	4.72 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	1.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.57 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.69 %
archaeon 13_2_20CM_2_52_21	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	4.72 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.57 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10105001	All Organisms → cellular organisms → Archaea	830	Open in IMG/M
3300002560\|JGI25383J37093_10091426	All Organisms → cellular organisms → Archaea	904	Open in IMG/M
3300002561\|JGI25384J37096_10055661	All Organisms → cellular organisms → Archaea	1489	Open in IMG/M
3300002911\|JGI25390J43892_10099314	All Organisms → cellular organisms → Archaea	653	Open in IMG/M
3300005166\|Ga0066674_10046574	All Organisms → cellular organisms → Archaea	1948	Open in IMG/M
3300005166\|Ga0066674_10152432	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300005166\|Ga0066674_10266956	Not Available	808	Open in IMG/M
3300005166\|Ga0066674_10498771	All Organisms → cellular organisms → Archaea	548	Open in IMG/M
3300005166\|Ga0066674_10511064	All Organisms → cellular organisms → Archaea	540	Open in IMG/M
3300005166\|Ga0066674_10545435	All Organisms → cellular organisms → Archaea	516	Open in IMG/M
3300005172\|Ga0066683_10319138	Not Available	965	Open in IMG/M
3300005176\|Ga0066679_10306323	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1033	Open in IMG/M
3300005180\|Ga0066685_10215558	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300005180\|Ga0066685_10325624	All Organisms → cellular organisms → Archaea	1065	Open in IMG/M
3300005180\|Ga0066685_10403564	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
3300005180\|Ga0066685_11059049	All Organisms → cellular organisms → Archaea	532	Open in IMG/M
3300005186\|Ga0066676_11179132	All Organisms → cellular organisms → Archaea	502	Open in IMG/M
3300005446\|Ga0066686_10204910	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300005450\|Ga0066682_10096920	Not Available	1848	Open in IMG/M
3300005450\|Ga0066682_10462584	Not Available	805	Open in IMG/M
3300005451\|Ga0066681_10005488	All Organisms → cellular organisms → Bacteria	5847	Open in IMG/M
3300005451\|Ga0066681_10323568	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300005536\|Ga0070697_100011346	All Organisms → cellular organisms → Bacteria	6962	Open in IMG/M
3300005552\|Ga0066701_10670022	All Organisms → cellular organisms → Archaea	625	Open in IMG/M
3300005558\|Ga0066698_10148908	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	1580	Open in IMG/M
3300005575\|Ga0066702_10093713	All Organisms → cellular organisms → Archaea	1703	Open in IMG/M
3300005586\|Ga0066691_10122698	Not Available	1476	Open in IMG/M
3300006046\|Ga0066652_101766952	Not Available	560	Open in IMG/M
3300006046\|Ga0066652_101815284	All Organisms → cellular organisms → Archaea	550	Open in IMG/M
3300006794\|Ga0066658_10941901	All Organisms → cellular organisms → Archaea	501	Open in IMG/M
3300006796\|Ga0066665_10187204	All Organisms → cellular organisms → Archaea	1598	Open in IMG/M
3300006797\|Ga0066659_10081675	All Organisms → cellular organisms → Archaea	2147	Open in IMG/M
3300007255\|Ga0099791_10308920	All Organisms → cellular organisms → Archaea	754	Open in IMG/M
3300007265\|Ga0099794_10427543	All Organisms → cellular organisms → Archaea	693	Open in IMG/M
3300009012\|Ga0066710_104484593	All Organisms → cellular organisms → Archaea	522	Open in IMG/M
3300009038\|Ga0099829_10212657	Not Available	1568	Open in IMG/M
3300009038\|Ga0099829_10442657	All Organisms → cellular organisms → Archaea	1076	Open in IMG/M
3300009088\|Ga0099830_10830256	All Organisms → cellular organisms → Archaea	763	Open in IMG/M
3300009089\|Ga0099828_10621972	All Organisms → cellular organisms → Archaea	971	Open in IMG/M
3300009090\|Ga0099827_10217268	All Organisms → cellular organisms → Archaea	1596	Open in IMG/M
3300009137\|Ga0066709_104305145	All Organisms → cellular organisms → Archaea	519	Open in IMG/M
3300009444\|Ga0114945_10660409	All Organisms → cellular organisms → Archaea	636	Open in IMG/M
3300009803\|Ga0105065_1063100	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300010047\|Ga0126382_12383447	All Organisms → cellular organisms → Archaea	513	Open in IMG/M
3300010321\|Ga0134067_10417715	All Organisms → cellular organisms → Archaea	541	Open in IMG/M
3300010323\|Ga0134086_10051908	All Organisms → Viruses → Predicted Viral	1392	Open in IMG/M
3300010329\|Ga0134111_10070915	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1299	Open in IMG/M
3300010333\|Ga0134080_10049183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1655	Open in IMG/M
3300010336\|Ga0134071_10512002	All Organisms → cellular organisms → Archaea	621	Open in IMG/M
3300010361\|Ga0126378_11914412	All Organisms → cellular organisms → Archaea	675	Open in IMG/M
3300010398\|Ga0126383_13664014	All Organisms → cellular organisms → Archaea	502	Open in IMG/M
3300011269\|Ga0137392_10598863	All Organisms → cellular organisms → Archaea	915	Open in IMG/M
3300011270\|Ga0137391_10279587	All Organisms → cellular organisms → Archaea	1442	Open in IMG/M
3300012096\|Ga0137389_10082411	All Organisms → cellular organisms → Archaea	2517	Open in IMG/M
3300012096\|Ga0137389_10909557	All Organisms → cellular organisms → Archaea	755	Open in IMG/M
3300012189\|Ga0137388_11510837	All Organisms → cellular organisms → Archaea	609	Open in IMG/M
3300012189\|Ga0137388_11588050	All Organisms → cellular organisms → Archaea	590	Open in IMG/M
3300012201\|Ga0137365_10237440	All Organisms → cellular organisms → Archaea	1358	Open in IMG/M
3300012203\|Ga0137399_10207956	All Organisms → cellular organisms → Archaea	1591	Open in IMG/M
3300012204\|Ga0137374_10284077	All Organisms → cellular organisms → Archaea	1367	Open in IMG/M
3300012206\|Ga0137380_10357731	All Organisms → cellular organisms → Archaea	1301	Open in IMG/M
3300012206\|Ga0137380_11304618	All Organisms → cellular organisms → Archaea	611	Open in IMG/M
3300012206\|Ga0137380_11733643	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300012207\|Ga0137381_10167962	Not Available	1893	Open in IMG/M
3300012207\|Ga0137381_10535145	All Organisms → Viruses → Predicted Viral	1022	Open in IMG/M
3300012207\|Ga0137381_10549902	Not Available	1007	Open in IMG/M
3300012208\|Ga0137376_10040601	All Organisms → cellular organisms → Archaea	3758	Open in IMG/M
3300012209\|Ga0137379_10595935	Not Available	1012	Open in IMG/M
3300012210\|Ga0137378_10237704	Not Available	1696	Open in IMG/M
3300012210\|Ga0137378_10767578	All Organisms → cellular organisms → Archaea	876	Open in IMG/M
3300012211\|Ga0137377_11725467	All Organisms → cellular organisms → Archaea	547	Open in IMG/M
3300012349\|Ga0137387_10069314	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2398	Open in IMG/M
3300012349\|Ga0137387_11170770	All Organisms → cellular organisms → Archaea	544	Open in IMG/M
3300012350\|Ga0137372_10103060	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300012351\|Ga0137386_10145772	Not Available	1691	Open in IMG/M
3300012351\|Ga0137386_10222204	Not Available	1357	Open in IMG/M
3300012351\|Ga0137386_11200876	All Organisms → cellular organisms → Archaea	531	Open in IMG/M
3300012363\|Ga0137390_10741547	All Organisms → cellular organisms → Archaea	942	Open in IMG/M
3300012405\|Ga0134041_1294870	All Organisms → cellular organisms → Archaea	546	Open in IMG/M
3300012407\|Ga0134050_1357612	Not Available	741	Open in IMG/M
3300012971\|Ga0126369_13443965	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300014154\|Ga0134075_10181527	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	903	Open in IMG/M
3300015358\|Ga0134089_10112240	Not Available	1053	Open in IMG/M
3300015359\|Ga0134085_10204453	All Organisms → cellular organisms → Archaea	851	Open in IMG/M
3300017654\|Ga0134069_1036136	All Organisms → cellular organisms → Archaea	1528	Open in IMG/M
3300017654\|Ga0134069_1099552	All Organisms → cellular organisms → Archaea	947	Open in IMG/M
3300017656\|Ga0134112_10151378	Not Available	892	Open in IMG/M
3300017657\|Ga0134074_1097154	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300017659\|Ga0134083_10170362	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	888	Open in IMG/M
3300017659\|Ga0134083_10355472	All Organisms → cellular organisms → Archaea	631	Open in IMG/M
3300018433\|Ga0066667_10970314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	733	Open in IMG/M
3300018468\|Ga0066662_12771477	All Organisms → cellular organisms → Archaea	519	Open in IMG/M
3300021088\|Ga0210404_10175443	All Organisms → cellular organisms → Archaea	1137	Open in IMG/M
3300025326\|Ga0209342_11126823	All Organisms → cellular organisms → Archaea	586	Open in IMG/M
3300025922\|Ga0207646_11844375	All Organisms → cellular organisms → Archaea	516	Open in IMG/M
3300026277\|Ga0209350_1103621	All Organisms → cellular organisms → Archaea	682	Open in IMG/M
3300026296\|Ga0209235_1227411	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	596	Open in IMG/M
3300026298\|Ga0209236_1113188	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	1206	Open in IMG/M
3300026298\|Ga0209236_1125612	All Organisms → cellular organisms → Archaea	1125	Open in IMG/M
3300026306\|Ga0209468_1187463	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300026318\|Ga0209471_1041994	All Organisms → cellular organisms → Archaea	2165	Open in IMG/M
3300026326\|Ga0209801_1097561	Not Available	1273	Open in IMG/M
3300026333\|Ga0209158_1087963	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	1201	Open in IMG/M
3300026334\|Ga0209377_1178812	All Organisms → cellular organisms → Archaea	745	Open in IMG/M
3300026335\|Ga0209804_1237554	All Organisms → cellular organisms → Archaea	706	Open in IMG/M
3300026342\|Ga0209057_1248403	All Organisms → cellular organisms → Archaea	506	Open in IMG/M
3300026499\|Ga0257181_1075685	All Organisms → cellular organisms → Archaea	580	Open in IMG/M
3300026527\|Ga0209059_1239698	All Organisms → cellular organisms → Archaea	608	Open in IMG/M
3300026528\|Ga0209378_1019834	All Organisms → cellular organisms → Archaea	3773	Open in IMG/M
3300026536\|Ga0209058_1163409	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	1017	Open in IMG/M
3300026538\|Ga0209056_10018408	All Organisms → cellular organisms → Archaea	6869	Open in IMG/M
3300026538\|Ga0209056_10110244	All Organisms → cellular organisms → Archaea	2216	Open in IMG/M
3300026548\|Ga0209161_10074080	All Organisms → cellular organisms → Archaea	2128	Open in IMG/M
3300026552\|Ga0209577_10481500	All Organisms → cellular organisms → Archaea	840	Open in IMG/M
3300027846\|Ga0209180_10418091	All Organisms → cellular organisms → Archaea	758	Open in IMG/M
3300027875\|Ga0209283_10469090	All Organisms → cellular organisms → Archaea	813	Open in IMG/M
3300027882\|Ga0209590_10516559	All Organisms → cellular organisms → Archaea	771	Open in IMG/M
3300028536\|Ga0137415_10069628	Not Available	3382	Open in IMG/M
3300028536\|Ga0137415_10946279	All Organisms → cellular organisms → Archaea	672	Open in IMG/M
3300032180\|Ga0307471_100041010	Not Available	3709	Open in IMG/M
3300032180\|Ga0307471_102935454	All Organisms → cellular organisms → Archaea	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.21%
Aquatic	Environmental → Aquatic	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.21%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.28%
Loam	Environmental → Terrestrial → Soil → Loam	3.15%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.79%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	45.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.57%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	34.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	12.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.57%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.79%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_101050011	3300002558	Grasslands Soil	MNLNLGWTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLSDLNKLYMVDRALYTNTPGIPLYMEFTPQNMRSMKTPL
JGI25383J37093_100590171	3300002560	Grasslands Soil	MKLDQGSAGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLSDLNKLY
JGI25383J37093_100914262	3300002560	Grasslands Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMEWTPQ
JGI25384J37096_100556611	3300002561	Grasslands Soil	MNLNLGWTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLSDLNKLYMVDRALYTNTPGIPLYME
JGI25390J43892_100993142	3300002911	Grasslands Soil	MRLNQGPTGELRVLDCGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSMKTP
Ga0066674_100465745	3300005166	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMR
Ga0066674_101524321	3300005166	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSIK
Ga0066674_102669561	3300005166	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTP
Ga0066674_104987711	3300005166	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFT
Ga0066674_105110641	3300005166	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYTN
Ga0066674_105454351	3300005166	Soil	MRLNQGPAGELRVLDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMR
Ga0066683_103191381	3300005172	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLP
Ga0066679_103063231	3300005176	Soil	MKLDPGSMGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALY
Ga0066685_102155584	3300005180	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMEWTPQN
Ga0066685_103256241	3300005180	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALY
Ga0066685_104035643	3300005180	Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQN
Ga0066685_110590491	3300005180	Soil	MRLNQGPTGELRVLDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTP
Ga0066676_111791322	3300005186	Soil	MKLDQGPTGELRVLDSGYTDQVLLDTISEEVLRIKATICNSLQDLNKLYMVDRA
Ga0066686_102049101	3300005446	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMEWT
Ga0066682_100969201	3300005450	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSM
Ga0066682_104625841	3300005450	Soil	MRLNQGPTGELRVLDAGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSM
Ga0066681_100054888	3300005451	Soil	MKLDQGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQN
Ga0066681_103235683	3300005451	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQN
Ga0070697_1000113469	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIVYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMSAM
Ga0066701_106700222	3300005552	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTITEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGI
Ga0066698_101489081	3300005558	Soil	MKLDQSPSGELRVLDSGYTDQVRLDTISEEVLRIKALVCNSINDLNKLYMVDRALYTNTPGI
Ga0066700_103847972	3300005559	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLF
Ga0066702_100937131	3300005575	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRA
Ga0066702_109440982	3300005575	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNK
Ga0066691_101226982	3300005586	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEDYLRIKAIVFNSLNDMNKLFLVDRALYTNSPERPLFMEWTPQNM
Ga0066652_1017669522	3300006046	Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGL
Ga0066652_1018152842	3300006046	Soil	LRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQN
Ga0066658_109419011	3300006794	Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSIRTP
Ga0066665_101872041	3300006796	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSIRTP
Ga0066659_100816751	3300006797	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSI
Ga0099791_103089202	3300007255	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEFT
Ga0099794_104275431	3300007265	Vadose Zone Soil	MKLDQGPSGELKVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSP
Ga0066710_1028424481	3300009012	Grasslands Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVD
Ga0066710_1044845931	3300009012	Grasslands Soil	MKLDQGPSGELMVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVD
Ga0099829_102126573	3300009038	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMS
Ga0099829_104426571	3300009038	Vadose Zone Soil	MKLDQGSTGELRVVDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVD
Ga0099830_108302562	3300009088	Vadose Zone Soil	MKLDQGPSGELRVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPDMPLFMELTPQNMS
Ga0099828_106219721	3300009089	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALY
Ga0099827_102172683	3300009090	Vadose Zone Soil	VKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEFTPQNMKSI
Ga0066709_1043051451	3300009137	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNT
Ga0114945_106604092	3300009444	Thermal Springs	LGELTVLDSGYTDQVLLDCVSEEFLRIKAVVYNSLNDLNKLFLVDRALYTSSPDRPLYYEFTPQNMASIRKPLVISE
Ga0105065_10631001	3300009803	Groundwater Sand	LKLDQGPAGELTVLDSGYTDQVLLDCVSEEFLRIKAVVYNSLNDLNKLFLVDRALYTSSPDRPLYYEFTPQNMA
Ga0126382_123834471	3300010047	Tropical Forest Soil	MKLGQGPSGELTVLDSGFTDQILLDCISEEVLRIRATIYNSLNDLNKLYHVDRALYTNSPQNPLFMEFT
Ga0134067_104177151	3300010321	Grasslands Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLLDLNRLYMVDRALYT
Ga0134086_100519081	3300010323	Grasslands Soil	MRLNQGPTGELRVLDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLP
Ga0134111_100709153	3300010329	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGI
Ga0134080_100491831	3300010333	Grasslands Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSMKT
Ga0134071_105120022	3300010336	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYT
Ga0126378_119144121	3300010361	Tropical Forest Soil	MKLDQGPTGEFKVLDSGYTDQVLLDTANEEVLRIKAIVCNSLNDLTKLYMVDRALYTNTPGLPLYMEFTPRKIESLK
Ga0126383_136640141	3300010398	Tropical Forest Soil	MKLGHGPLGELTVLDSGFTDQILLDCISEEVLRIRATIYNSLNDLNKLYHVDRALYTNSPQNPLFMEFTPETVLSMKMPLV
Ga0137392_105988631	3300011269	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNT
Ga0137391_102795873	3300011270	Vadose Zone Soil	MKLGQGPEGELTVLDSGFTDQILLDCISEEVLRIRAAIYNSLNDLNKLFHVDRALYT
Ga0137389_100824114	3300012096	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYM
Ga0137389_109095571	3300012096	Vadose Zone Soil	MNLNQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEFTPQNMKSIKTP
Ga0137388_115108371	3300012189	Vadose Zone Soil	MRIDQGPSGELRVLDSGYTDQVLLDCISEEVLRIKAVVYNSLNDLNKLFHVDRALYT
Ga0137388_115880502	3300012189	Vadose Zone Soil	MKLDQGPSGELTVLDTGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNS
Ga0137365_102374403	3300012201	Vadose Zone Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEF
Ga0137399_102079564	3300012203	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPLYMEFTPQNMKSIK
Ga0137374_102840771	3300012204	Vadose Zone Soil	MRLDQGPTGELRVLDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTP
Ga0137380_103577314	3300012206	Vadose Zone Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTN
Ga0137380_113046181	3300012206	Vadose Zone Soil	MKLDQAPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMSAMRKPLV
Ga0137380_117336432	3300012206	Vadose Zone Soil	MRLNQGPTGELRVLSSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPLYMEFTPQNMRSMK
Ga0137381_101679624	3300012207	Vadose Zone Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLY
Ga0137381_105351453	3300012207	Vadose Zone Soil	MKLDPGGIGELRVLDSGYADQVLLDTINEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGIPLYMEFTPQNMKWIR
Ga0137381_105499022	3300012207	Vadose Zone Soil	MRLNQGLTGELRVLYSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPLYMEFTPQNM
Ga0137376_100406016	3300012208	Vadose Zone Soil	MKLDPGALGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGI
Ga0137379_105959351	3300012209	Vadose Zone Soil	MKLDQAPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSP
Ga0137378_102377042	3300012210	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRAL
Ga0137378_107675782	3300012210	Vadose Zone Soil	MNLNQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTN
Ga0137377_117254671	3300012211	Vadose Zone Soil	MKLDQARSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNS
Ga0137387_100693143	3300012349	Vadose Zone Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSMK
Ga0137387_111707701	3300012349	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRA
Ga0137372_101030605	3300012350	Vadose Zone Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQ
Ga0137386_101457722	3300012351	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMSA
Ga0137386_102222042	3300012351	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPER
Ga0137386_112008761	3300012351	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNM
Ga0137390_107415473	3300012363	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYM
Ga0134041_12948701	3300012405	Grasslands Soil	LDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSMKTPLIIRGSNSTPSKESGACGP*
Ga0134050_13576122	3300012407	Grasslands Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQN
Ga0126369_134439652	3300012971	Tropical Forest Soil	MKLDQAPTGELKVLDSGFTDQVLLDTITEGVLRIRAVVCNSLSDLNRLFTVDRAL
Ga0134075_101815272	3300014154	Grasslands Soil	MKLDQGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEF
Ga0134089_101122403	3300015358	Grasslands Soil	MRLNQGPTGELRVLDSGYTDEVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYM
Ga0134085_102044532	3300015359	Grasslands Soil	MRLNQGPTGELRVLDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNM
Ga0134069_10361363	3300017654	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGLPFYMEFTPQNMRSMKTPLII
Ga0134069_10995522	3300017654	Grasslands Soil	MRLNQGPTGELRVLDSGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVDRALYTNTPGLPFYMEFTPQNMRSMKTPIIIS
Ga0134112_101513782	3300017656	Grasslands Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNS
Ga0134074_10971543	3300017657	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPL
Ga0134083_101703622	3300017659	Grasslands Soil	MKLGQDPIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDFNRLYMVDRALYT
Ga0134083_103554722	3300017659	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTINEEVLRIKATVCNSLQDLNRLYMVDRALYTNT
Ga0066667_109703141	3300018433	Grasslands Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYME
Ga0066662_127714772	3300018468	Grasslands Soil	MKLDPGGIGELRVLDSGYTDQVLLDTITEEVLRIKATVCNSLQDLNRLYMVDRALYT
Ga0210404_101754431	3300021088	Soil	MKLDQDPIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEFTPQNMKSIKTPL
Ga0209342_111268231	3300025326	Soil	LKLDQGPAGELTVLDSGYTDQVLLDCVSEEFLRIRAVVYNSLNDLNKLFLVDRAL
Ga0209751_109869112	3300025327	Soil	LKLDQGPAGELTVLDSGYTDQVLLDCVSEGFLRIKAVVYNSLNDLNKL
Ga0207646_118443751	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKLDQDPTGELRVLDSGYTDQVLLDTISQEVLRIKATVCNSLQDLNKLYTVDRALYTNTPGLPLYMEFTPR
Ga0209350_11036211	3300026277	Grasslands Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMEWTPQNMSAM
Ga0209235_12274111	3300026296	Grasslands Soil	MKLDQGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALY
Ga0209236_11131882	3300026298	Grasslands Soil	MKLDQSPSGELRVLDSGYTDQVRLDTISEEVLRIKALVCNSINDLNKLYMVDRALYTNTPGIPLYMEFTPQSMRSMKTPLI
Ga0209236_11256123	3300026298	Grasslands Soil	MKLDPGAMGELRVLDSGYTDQVLLDTISEEVLRIKATVRNSLQDLNKLYMVDR
Ga0209468_11874631	3300026306	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMEWTPRNM
Ga0209471_10419941	3300026318	Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMK
Ga0209801_10975613	3300026326	Soil	MRLNQGPTGELRVLDCGYTDQVQLDTVSEEVLRIKALVCNSLSDFNRLYMVD
Ga0209375_12324331	3300026329	Soil	MKLDQGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLY
Ga0209158_10879631	3300026333	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPL
Ga0209377_11788121	3300026334	Soil	MKLDPGSMGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSI
Ga0209804_12375541	3300026335	Soil	MKLDQGPSGELMVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMSAMKKP
Ga0209057_12484031	3300026342	Soil	MKLDPGGIGDLRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTP
Ga0257181_10756851	3300026499	Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMSSMRKPLV
Ga0209059_12396982	3300026527	Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSIRT
Ga0209378_10198341	3300026528	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYM
Ga0209058_11634092	3300026536	Soil	MKLDQSPSGELRVLDSGYTDQVRLDTISEEVLRIKALVCNSINDLNKLYMVDRAL
Ga0209056_1001840810	3300026538	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPL
Ga0209056_101102441	3300026538	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKS
Ga0209161_100740801	3300026548	Soil	MKLDPGGIGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSIR
Ga0209577_104815002	3300026552	Soil	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIQATVCNSLQDLNRLYMVDRALYTNTPGI
Ga0209180_104180911	3300027846	Vadose Zone Soil	MKLDQSPSGELQVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTN
Ga0209283_104690901	3300027875	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFMELTPQNMSAMKKPLVI
Ga0209590_105165591	3300027882	Vadose Zone Soil	MKLDQGPSGELTVLDSGYTDQVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRALYTNSPERPLFLE
Ga0137415_100696281	3300028536	Vadose Zone Soil	MKLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTP
Ga0137415_109462791	3300028536	Vadose Zone Soil	MKLYQSPSGELTVLDSGYTDHVLLDCVSEEYLRIKAIIYNSLNDMNKLFLVDRAL
Ga0307471_1000410106	3300032180	Hardwood Forest Soil	MKLDQDPTGELRVLDSGYTDQVLLDTISQEVLRIKATVCNSLQDLNKLYTVDRALYTNT
Ga0307471_1029354541	3300032180	Hardwood Forest Soil	MKLDQGPGGEIRVLDSGYTDQVQLDSVSEEFLRIRAVVYNSLNDLNKLFLVDRALYTNTPDLPIYFEFTPQNMAAMRTPLV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065601

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences