Metagenome / Metatranscriptome Family F065365

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065365
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	59 residues
Representative Sequence	WEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP
Number of Associated Samples	81
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.79 %
% of genes near scaffold ends (potentially truncated)	92.13 %
% of genes from short scaffolds (< 2000 bps)	94.49 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (91.339 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (67.716 % of family members)
Environment Ontology (ENVO)	Unclassified (86.614 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (79.528 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.77% β-sheet: 0.00% Coil/Unstructured: 40.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00385	Chromo	18.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
All Organisms	root	All Organisms	8.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
cellular organisms	root	All Organisms → cellular organisms	8.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	6.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	6.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	6.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	6.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	6.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	5.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	4.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.34 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	4.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005347\|Ga0070668_100131734	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	2007	Open in IMG/M
3300005355\|Ga0070671_101036557	Not Available	719	Open in IMG/M
3300005365\|Ga0070688_100845423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	718	Open in IMG/M
3300005445\|Ga0070708_100221688	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300005468\|Ga0070707_101729251	Not Available	593	Open in IMG/M
3300005617\|Ga0068859_103125763	Not Available	504	Open in IMG/M
3300005618\|Ga0068864_102172350	Not Available	561	Open in IMG/M
3300005618\|Ga0068864_102436552	Not Available	529	Open in IMG/M
3300005719\|Ga0068861_101207404	Not Available	732	Open in IMG/M
3300005843\|Ga0068860_102588716	Not Available	526	Open in IMG/M
3300009101\|Ga0105247_11767984	Not Available	513	Open in IMG/M
3300009972\|Ga0105137_100907	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1002	Open in IMG/M
3300009972\|Ga0105137_101041	Not Available	968	Open in IMG/M
3300009972\|Ga0105137_105536	Not Available	621	Open in IMG/M
3300009972\|Ga0105137_108371	Not Available	550	Open in IMG/M
3300009980\|Ga0105135_108770	Not Available	743	Open in IMG/M
3300009980\|Ga0105135_118763	Not Available	597	Open in IMG/M
3300009980\|Ga0105135_127243	Not Available	528	Open in IMG/M
3300009981\|Ga0105133_131279	Not Available	507	Open in IMG/M
3300009989\|Ga0105131_126780	Not Available	599	Open in IMG/M
3300009992\|Ga0105120_1055745	Not Available	504	Open in IMG/M
3300010371\|Ga0134125_11529844	Not Available	726	Open in IMG/M
3300010403\|Ga0134123_11968829	Not Available	642	Open in IMG/M
3300010403\|Ga0134123_13385522	Not Available	515	Open in IMG/M
3300012949\|Ga0153798_10237062	Not Available	624	Open in IMG/M
3300015270\|Ga0182183_1053020	Not Available	608	Open in IMG/M
3300015270\|Ga0182183_1079423	Not Available	534	Open in IMG/M
3300015284\|Ga0182101_1011130	Not Available	995	Open in IMG/M
3300015284\|Ga0182101_1049191	Not Available	642	Open in IMG/M
3300015297\|Ga0182104_1049387	Not Available	688	Open in IMG/M
3300015297\|Ga0182104_1070456	Not Available	611	Open in IMG/M
3300015297\|Ga0182104_1080938	Not Available	582	Open in IMG/M
3300015297\|Ga0182104_1093906	Not Available	552	Open in IMG/M
3300015301\|Ga0182184_1009814	Not Available	1071	Open in IMG/M
3300015309\|Ga0182098_1114287	Not Available	524	Open in IMG/M
3300015310\|Ga0182162_1024879	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	890	Open in IMG/M
3300015310\|Ga0182162_1078867	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300015311\|Ga0182182_1050706	Not Available	688	Open in IMG/M
3300015311\|Ga0182182_1096515	Not Available	549	Open in IMG/M
3300015312\|Ga0182168_1118015	Not Available	534	Open in IMG/M
3300015313\|Ga0182164_1031674	Not Available	852	Open in IMG/M
3300015315\|Ga0182120_1013611	Not Available	1116	Open in IMG/M
3300015316\|Ga0182121_1016715	Not Available	1096	Open in IMG/M
3300015317\|Ga0182136_1099512	Not Available	577	Open in IMG/M
3300015319\|Ga0182130_1082032	Not Available	610	Open in IMG/M
3300015320\|Ga0182165_1138049	Not Available	517	Open in IMG/M
3300015324\|Ga0182134_1014257	Not Available	1122	Open in IMG/M
3300015324\|Ga0182134_1017738	Not Available	1051	Open in IMG/M
3300015324\|Ga0182134_1070240	Not Available	670	Open in IMG/M
3300015326\|Ga0182166_1036902	Not Available	819	Open in IMG/M
3300015326\|Ga0182166_1079194	Not Available	633	Open in IMG/M
3300015327\|Ga0182114_1007575	Not Available	1423	Open in IMG/M
3300015327\|Ga0182114_1142272	Not Available	531	Open in IMG/M
3300015328\|Ga0182153_1081736	Not Available	642	Open in IMG/M
3300015330\|Ga0182152_1028356	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	934	Open in IMG/M
3300015330\|Ga0182152_1088298	Not Available	629	Open in IMG/M
3300015331\|Ga0182131_1023655	Not Available	988	Open in IMG/M
3300015331\|Ga0182131_1131384	Not Available	540	Open in IMG/M
3300015331\|Ga0182131_1151041	Not Available	509	Open in IMG/M
3300015331\|Ga0182131_1154203	Not Available	505	Open in IMG/M
3300015332\|Ga0182117_1051177	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	816	Open in IMG/M
3300015332\|Ga0182117_1059769	Not Available	771	Open in IMG/M
3300015333\|Ga0182147_1028375	Not Available	980	Open in IMG/M
3300015333\|Ga0182147_1123543	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	574	Open in IMG/M
3300015336\|Ga0182150_1095957	Not Available	628	Open in IMG/M
3300015337\|Ga0182151_1153255	Not Available	520	Open in IMG/M
3300015338\|Ga0182137_1107912	Not Available	627	Open in IMG/M
3300015348\|Ga0182115_1055101	Not Available	1175	Open in IMG/M
3300015348\|Ga0182115_1272423	Not Available	536	Open in IMG/M
3300015348\|Ga0182115_1281470	Not Available	526	Open in IMG/M
3300015349\|Ga0182185_1142009	Not Available	712	Open in IMG/M
3300015349\|Ga0182185_1181122	Not Available	634	Open in IMG/M
3300015349\|Ga0182185_1286585	Not Available	503	Open in IMG/M
3300015350\|Ga0182163_1073265	Not Available	1007	Open in IMG/M
3300015350\|Ga0182163_1102599	Not Available	869	Open in IMG/M
3300015350\|Ga0182163_1105580	Not Available	858	Open in IMG/M
3300015350\|Ga0182163_1146082	Not Available	734	Open in IMG/M
3300015350\|Ga0182163_1246089	Not Available	560	Open in IMG/M
3300015352\|Ga0182169_1275160	Not Available	545	Open in IMG/M
3300015353\|Ga0182179_1132307	Not Available	768	Open in IMG/M
3300015354\|Ga0182167_1123553	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	953	Open in IMG/M
3300015354\|Ga0182167_1154836	Not Available	846	Open in IMG/M
3300015354\|Ga0182167_1285656	Not Available	588	Open in IMG/M
3300015354\|Ga0182167_1288148	Not Available	585	Open in IMG/M
3300017408\|Ga0182197_1115378	Not Available	559	Open in IMG/M
3300017412\|Ga0182199_1112117	Not Available	637	Open in IMG/M
3300017412\|Ga0182199_1157964	Not Available	558	Open in IMG/M
3300017414\|Ga0182195_1215467	Not Available	508	Open in IMG/M
3300017421\|Ga0182213_1144204	Not Available	669	Open in IMG/M
3300017422\|Ga0182201_1008039	Not Available	1273	Open in IMG/M
3300017422\|Ga0182201_1095651	Not Available	582	Open in IMG/M
3300017432\|Ga0182196_1089969	Not Available	610	Open in IMG/M
3300017435\|Ga0182194_1085507	Not Available	628	Open in IMG/M
3300017439\|Ga0182200_1007418	Not Available	1406	Open in IMG/M
3300017439\|Ga0182200_1053428	Not Available	742	Open in IMG/M
3300017447\|Ga0182215_1150474	Not Available	537	Open in IMG/M
3300017691\|Ga0182212_1125959	Not Available	580	Open in IMG/M
3300017693\|Ga0182216_1077491	Not Available	763	Open in IMG/M
3300017694\|Ga0182211_1086239	Not Available	731	Open in IMG/M
3300025903\|Ga0207680_10481836	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	882	Open in IMG/M
3300025903\|Ga0207680_11219044	Not Available	536	Open in IMG/M
3300028050\|Ga0268328_1050936	Not Available	572	Open in IMG/M
3300028053\|Ga0268346_1007758	Not Available	855	Open in IMG/M
3300028055\|Ga0268338_1000448	Not Available	1767	Open in IMG/M
3300028062\|Ga0268342_1024236	Not Available	619	Open in IMG/M
3300028151\|Ga0268308_1003608	Not Available	1018	Open in IMG/M
3300028246\|Ga0268351_1034172	Not Available	521	Open in IMG/M
3300028379\|Ga0268266_12273158	Not Available	514	Open in IMG/M
3300028471\|Ga0268323_1008332	Not Available	670	Open in IMG/M
3300028475\|Ga0268327_1011175	Not Available	659	Open in IMG/M
3300028476\|Ga0268329_1014052	Not Available	631	Open in IMG/M
3300028523\|Ga0268313_1000221	Not Available	1905	Open in IMG/M
3300028526\|Ga0268339_1006150	Not Available	710	Open in IMG/M
3300032466\|Ga0214503_1261600	Not Available	534	Open in IMG/M
3300032467\|Ga0214488_1125974	Not Available	541	Open in IMG/M
3300032467\|Ga0214488_1129823	Not Available	530	Open in IMG/M
3300032490\|Ga0214495_1140961	Not Available	538	Open in IMG/M
3300032490\|Ga0214495_1151564	Not Available	512	Open in IMG/M
3300032502\|Ga0214490_1114179	Not Available	615	Open in IMG/M
3300032697\|Ga0214499_1202672	Not Available	614	Open in IMG/M
3300032697\|Ga0214499_1246008	Not Available	551	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	94.49%
Environmental	Environmental	4.72%
Engineered	Engineered	0.79%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	94.49%
Terrestrial	Environmental → Terrestrial	4.72%
Bioreactor	Engineered → Bioreactor	0.79%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	77.17%
Unclassified	Host-Associated → Plants → Unclassified	8.66%
Soil	Environmental → Terrestrial → Soil	4.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.94%
Unclassified	Engineered → Bioreactor → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	77.17%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	8.66%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.36%
Loam	Environmental → Terrestrial → Soil → Loam	2.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.79%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	77.17%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	8.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.79%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	67.72%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	9.45%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	8.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Degrading	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009972	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaG	Host-Associated	Open in IMG/M
3300009980	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG	Host-Associated	Open in IMG/M
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated	Open in IMG/M
3300009989	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG	Host-Associated	Open in IMG/M
3300009992	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012949	Switchgrass enrichment cultures co-assembly	Engineered	Open in IMG/M
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015297	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015309	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015312	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015313	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015315	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015316	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015319	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015320	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015324	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015326	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015331	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015333	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017408	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017421	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017422	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017435	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017439	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017691	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028050	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028053	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028054	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_15MAY2017_LD1	Host-Associated	Open in IMG/M
3300028055	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028062	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028151	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028246	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028471	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028475	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028476	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028523	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028526	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300032466	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032467	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032490	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032502	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032697	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070668_1001317344	3300005347	Switchgrass Rhizosphere	REDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP*
Ga0070671_1010365572	3300005355	Switchgrass Rhizosphere	WEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP*
Ga0070688_1008454231	3300005365	Switchgrass Rhizosphere	RICRVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKFCFVVELEIPP*
Ga0070708_1002216881	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP*
Ga0070707_1017292512	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	EVRICRVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKLCFVVELDLSLKP*
Ga0068859_1031257631	3300005617	Switchgrass Rhizosphere	KEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP*
Ga0068864_1021723501	3300005618	Switchgrass Rhizosphere	EFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP*
Ga0068864_1024365522	3300005618	Switchgrass Rhizosphere	SEVRICRVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKLCFVVELVILLKP*
Ga0068861_1012074042	3300005719	Switchgrass Rhizosphere	PHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP*
Ga0068860_1025887162	3300005843	Switchgrass Rhizosphere	KKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP*
Ga0105247_117679842	3300009101	Switchgrass Rhizosphere	TWEREDALKKEFPHLFRNQSNLEDEIHFKRGRFVTSRKLTKINHALKFCFVVELEIPP*
Ga0105137_1009071	3300009972	Switchgrass Associated	REDALKKEFPHLFRNQSNLEDEIHFKWGRFVTPRKLIKLNRSLSLFLVVELDPSLKP*
Ga0105137_1010413	3300009972	Switchgrass Associated	FPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALMLCFVVELEILLKP*
Ga0105137_1055361	3300009972	Switchgrass Associated	TWEREDALKKEFPHLFRSQPNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP*
Ga0105137_1083711	3300009972	Switchgrass Associated	VEEATWEREDALKKEFPHLFRSQPNLEDEIHFKWGRFVTSRKFTKLNRALKPFFVVELDPS*
Ga0105135_1087701	3300009980	Switchgrass Associated	VKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGSFVTSRKLTKIKHALMLCFVVELEIILKT*
Ga0105135_1187632	3300009980	Switchgrass Associated	VKEATWEREDALKKEFPHLFRNQSHLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELETPP*
Ga0105135_1254971	3300009980	Switchgrass Associated	NLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELKIPP*
Ga0105135_1272431	3300009980	Switchgrass Associated	LFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELDFPSKP*
Ga0105133_1312791	3300009981	Switchgrass Associated	RICRVQWSRHGVKEATREREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVIELDFPPNHEP*
Ga0105131_1267801	3300009989	Switchgrass Associated	EFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKFCFVVELEIPP*
Ga0105120_10557451	3300009992	Switchgrass Associated	EREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELDFPSKP*
Ga0134125_115298441	3300010371	Terrestrial Soil	EEATWEREDALKKEFPHLFRSQPNLEDKIHFKWGRFVTSQKLTKINHALKLFFDSNPEP*
Ga0134123_119688291	3300010403	Terrestrial Soil	RHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP*
Ga0134123_133855221	3300010403	Terrestrial Soil	RHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKFCFVVELEIPP*
Ga0153798_102370622	3300012949	Switchgrass Degrading	VKEATWEREDALKKDFPHLFRNQSNLEDEIHFKWGWFVTSRKFTKINRALKLFFVELDSP
Ga0182183_10530202	3300015270	Switchgrass Phyllosphere	EDALKKEFRHLYRSQPNLEDEIYFKWGRFVTSRKLTKSNRALKLFLDVELDPL*
Ga0182183_10794232	3300015270	Switchgrass Phyllosphere	KEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEFLLKP*
Ga0182101_10111301	3300015284	Switchgrass Phyllosphere	RNSEVRICRVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP*
Ga0182101_10491911	3300015284	Switchgrass Phyllosphere	VKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKSNKNKSRANPCFVVELDPFLVSSSA*
Ga0182104_10493872	3300015297	Switchgrass Phyllosphere	ATWEREDALKKEFPHLFRSQPNLEDEIHFKWDRFVTSRKLTRLNRALKLFLVIELDPSLKP*
Ga0182104_10704562	3300015297	Switchgrass Phyllosphere	LKKKFPHLFRNQSNLEDEIHFKWGRFVTSQKFTKINRALKLFFVVELDSPLNPEP*
Ga0182104_10809382	3300015297	Switchgrass Phyllosphere	PHLFKNQPNLEDEIHFKWGRFVTSRKFTKSNHALKLCFVVELEILLKP*
Ga0182104_10939062	3300015297	Switchgrass Phyllosphere	VQWSRHGVEEATWERKDALKKEFPHLFRSQPNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELE
Ga0182184_10098141	3300015301	Switchgrass Phyllosphere	GVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKLNRALKLFFVELDSP*
Ga0182098_11142872	3300015309	Switchgrass Phyllosphere	WEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKFCFVVELEIPP*
Ga0182162_10248791	3300015310	Switchgrass Phyllosphere	EATWEREDALKKEFPHLFRNQSNLVDEIHFKWGRFLTSRKFTKLNHALKLCFVIELEILLKP*
Ga0182162_10788671	3300015310	Switchgrass Phyllosphere	RNSEVRICRVQWSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKINHALKLFFVVELDSNPEH*
Ga0182182_10507061	3300015311	Switchgrass Phyllosphere	GVGEATWEREDALKKEFPHLFRNRPNLEDEIHFKWGRFVTSQKFTKSNHTLKKIIFKILFVVELDPSCSNP*
Ga0182182_10965151	3300015311	Switchgrass Phyllosphere	RHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKLNRALKLFLVVELDPSLKP*
Ga0182168_11180152	3300015312	Switchgrass Phyllosphere	LFRNQPNLEDEIHFKWGRFVTSQKLTKLNRALKPFFVVELDSSLNPEP*
Ga0182164_10316742	3300015313	Switchgrass Phyllosphere	ALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKLPKINRALKFCFVVELEIPP*
Ga0182120_10136111	3300015315	Switchgrass Phyllosphere	EVRICRVQWSRHGVEEATWEREDALKKEFPHLFRSQPNLEDEIHFKWGRFVTSRKLTKLNHALKLFPVVELDPSLKP*
Ga0182121_10167151	3300015316	Switchgrass Phyllosphere	RVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP*
Ga0182136_10995121	3300015317	Switchgrass Phyllosphere	PEERVSHLFRSQPNLEDEIHFKWGRFVTSRKFTKINHALKISFQNFFIVELI*
Ga0182130_10820322	3300015319	Switchgrass Phyllosphere	RICRVQWSRHGVKEATWEREDALKKEFPHLFGNQSNLEDEIHFKWGRFVTSQKFTKINRALKLFFVVELDSPLNPEP*
Ga0182165_11380492	3300015320	Switchgrass Phyllosphere	VEEAKWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTELNHALKLFLVVELNPSLKP*
Ga0182134_10142573	3300015324	Switchgrass Phyllosphere	VRICRVQWSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKINHALKLCFVVELDFPLKP*
Ga0182134_10177381	3300015324	Switchgrass Phyllosphere	LKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKLNRALNLFLVVELDLSLKP*
Ga0182134_10702401	3300015324	Switchgrass Phyllosphere	VKEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKINHALMLCFVVELEILLKP*
Ga0182134_10735773	3300015324	Switchgrass Phyllosphere	RICRVQWSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKLNRALKLFSLSLSSTPP*
Ga0182166_10369022	3300015326	Switchgrass Phyllosphere	FRSQPNLEDEIHFKWGRFVTSRKFTKINHALKKIQNFFIVELN*
Ga0182166_10791941	3300015326	Switchgrass Phyllosphere	REDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKLNRALKLFFVELDSP*
Ga0182114_10075751	3300015327	Switchgrass Phyllosphere	ALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKINRALKLFFVELDSP*
Ga0182114_11422721	3300015327	Switchgrass Phyllosphere	RVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFITSRKLTKINHALKLCFVVELEILLKP*
Ga0182153_10817362	3300015328	Switchgrass Phyllosphere	WSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKLNRALIFVSRR*
Ga0182152_10283561	3300015330	Switchgrass Phyllosphere	SNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELVILLKP*
Ga0182152_10882981	3300015330	Switchgrass Phyllosphere	RICRVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKWTNLNHALMLCFVVELEILLKP*
Ga0182131_10236551	3300015331	Switchgrass Phyllosphere	EDALKKEFPHLFRSQPNLEDEIHFKWGRFVTSRKLTKLNHALEGVFIVELDLNPEP*
Ga0182131_11313841	3300015331	Switchgrass Phyllosphere	LFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEIFLKP*
Ga0182131_11510412	3300015331	Switchgrass Phyllosphere	VEEATWEREDALRKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKLNHALKLCSVVELDPLLGSSPA*
Ga0182131_11542031	3300015331	Switchgrass Phyllosphere	REDALKKEFPHLFRNQSNLEDEIHFKWGRFVTPRKLIKLNRALNLFLVVELDLSLKP*
Ga0182117_10511771	3300015332	Switchgrass Phyllosphere	KEATWEREDALKKEFPHLFKDQSNLEDEIHFKWGRFVTSQKSNKVKSRANPCFVVELDPLLESSPA*
Ga0182117_10597691	3300015332	Switchgrass Phyllosphere	EVRICRVQWSRHGIKEATWEREDALKKEFPHLFRDQSNLEDEIHFKWGRFVTPRKLIKLNRALNLFLVVELDLSLKP*
Ga0182147_10283751	3300015333	Switchgrass Phyllosphere	KEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALMLCFVVELEILLKP*
Ga0182147_10898632	3300015333	Switchgrass Phyllosphere	MWECEDALKKEFPHLFRSQPNLEDEIHFKWGWFVTSRKIYKINRTLKIIFK
Ga0182147_11235431	3300015333	Switchgrass Phyllosphere	RICRVQWSRHGVEEATWEHEDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKLNRALKPFFIVELD*
Ga0182150_10959571	3300015336	Switchgrass Phyllosphere	KKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKFCFVVELEIPP*
Ga0182151_11532552	3300015337	Switchgrass Phyllosphere	CRVQWSRHGIEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP*
Ga0182137_11079121	3300015338	Switchgrass Phyllosphere	ICRVQWSRHGVEEATWEREDALKKEFPHLFRIRPNLEDEIHFKWGRFVTSRKLTKLNRALKLFFVVELDSS*
Ga0182133_11029782	3300015340	Switchgrass Phyllosphere	RHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRNSLNKSCAKVIFR*
Ga0182115_10551011	3300015348	Switchgrass Phyllosphere	MKKEFPHLFRNQPNLEDEIHFKWGRFVTSQKLTKLNHALKLFFVVELDPSLKP*
Ga0182115_12724231	3300015348	Switchgrass Phyllosphere	RNSEVRICRVQWSRHGVKEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP*
Ga0182115_12814701	3300015348	Switchgrass Phyllosphere	KEFPHLFRNQPNLEDEIHFKWGRFVTSREFTKLNRALKPFFVVELDPFLNPDT*
Ga0182185_11420091	3300015349	Switchgrass Phyllosphere	LFRNQPNLEDEIHFKWGRFVTSQKFTKLNRALKPFFVVELDSP*
Ga0182185_11811221	3300015349	Switchgrass Phyllosphere	EDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKLNHALKLCSVVELDPLLGSSPA*
Ga0182185_12865852	3300015349	Switchgrass Phyllosphere	PNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP*
Ga0182163_10732651	3300015350	Switchgrass Phyllosphere	KEFPHLFRSQPNLEDEIHFKRGRFVTSQKFTKLNHALKYFFFIVELI*
Ga0182163_11025991	3300015350	Switchgrass Phyllosphere	REDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKWTNLNHALMLCFVVELEILLKP*
Ga0182163_11055801	3300015350	Switchgrass Phyllosphere	WSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKIKSCAKVVFVVELDSNPEP*
Ga0182163_11460821	3300015350	Switchgrass Phyllosphere	FPHLFRNQPNLEDEIHFKWGRFVTSRKFTKINHALKLCFVVELVILLKP*
Ga0182163_12460891	3300015350	Switchgrass Phyllosphere	RICRVQWSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKFTKLNRALKLFFVELDSP*
Ga0182169_12751602	3300015352	Switchgrass Phyllosphere	EFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKVNRALKLFFVVELDPS*
Ga0182179_11323071	3300015353	Switchgrass Phyllosphere	RICRVQWSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTFRKLTKLNHALKGFYR*
Ga0182167_11235532	3300015354	Switchgrass Phyllosphere	EATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKLNRALNLFLVVELDLSLKP*
Ga0182167_11548363	3300015354	Switchgrass Phyllosphere	SNLEDEIHFKWGRFVTSRKFTKLNHALKLCFVVELDFPLKP*
Ga0182167_12856561	3300015354	Switchgrass Phyllosphere	ATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKLNRALKLFLVVELDPSLKP*
Ga0182167_12881481	3300015354	Switchgrass Phyllosphere	GVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKIKSCAKVVFVVELDSNPEP*
Ga0182197_11153781	3300017408	Switchgrass Phyllosphere	KEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEILLKP
Ga0182199_11121171	3300017412	Switchgrass Phyllosphere	QPNLEDEIHFKWGRFVTSRKLTKLNRALKLFLVVELDPSLKP
Ga0182199_11579642	3300017412	Switchgrass Phyllosphere	ATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKWTNLNHALMLCFVVELEILLK
Ga0182195_12154672	3300017414	Switchgrass Phyllosphere	EREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKSNKNKSRVNPCFVVELDPFLVSSS
Ga0182213_11442042	3300017421	Switchgrass Phyllosphere	GVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP
Ga0182201_10080392	3300017422	Switchgrass Phyllosphere	EREDALKKEFPDLFRNQPNLEDEIHFKWGRFVTSRKLTKLNRALNLFLVVELDPSLKP
Ga0182201_10956511	3300017422	Switchgrass Phyllosphere	LFRNQSNLEDEIHFKWGRFVTSQKITKLNRALKLLFVVELDSPLNPEP
Ga0182196_10314541	3300017432	Switchgrass Phyllosphere	ICRVQWSRHGVEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSQKFTELNHASSISFKYSYC
Ga0182196_10899691	3300017432	Switchgrass Phyllosphere	VKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP
Ga0182194_10855071	3300017435	Switchgrass Phyllosphere	REDALKKEFPHLFRNQPNLEDEIHFKWGSFVTSRKFTKINHALKLFFVV
Ga0182200_10074183	3300017439	Switchgrass Phyllosphere	EREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTPRKLIKLNRALNLFLVVELDLSLKP
Ga0182200_10534282	3300017439	Switchgrass Phyllosphere	FPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKFCFVVELEIPP
Ga0182215_11504742	3300017447	Switchgrass Phyllosphere	EREDALTKEFPLLFRSQPNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEFLLKP
Ga0182212_11259591	3300017691	Switchgrass Phyllosphere	KEFPHLFRNQSNLEDEIHFKWGRFVTPRKLIKLNRALSLFLVVELDLPLKP
Ga0182216_10774911	3300017693	Switchgrass Phyllosphere	RNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP
Ga0182211_10862391	3300017694	Switchgrass Phyllosphere	KEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKFCFIVELDPFLDSSPA
Ga0207680_104818363	3300025903	Switchgrass Rhizosphere	KEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTQINHALKFCFVVELEIP
Ga0207680_112190442	3300025903	Switchgrass Rhizosphere	GVKEATWEREDDLKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKFCFVVELEIPP
Ga0268328_10509362	3300028050	Phyllosphere	RICRVQWSRHGVEEATWEREDALKKEFPHLFRSQPNLEDEIHFKWGRFVTTRKMHQINHTLKIFFSKPFFIIELRYP
Ga0268346_10077582	3300028053	Phyllosphere	EREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKLNRALNLFLVVELDLSLKP
Ga0268306_10214311	3300028054	Phyllosphere	DEIHSKWGRFVTSRKLTKINHALKLCFVVELEILLKP
Ga0268338_10004484	3300028055	Phyllosphere	KKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP
Ga0268342_10242362	3300028062	Phyllosphere	VRICRVQWSRHGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP
Ga0268308_10036081	3300028151	Phyllosphere	EDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP
Ga0268351_10341721	3300028246	Phyllosphere	VEEATWEREDALKKEFPHLFRNQPNLEDEIHFKWGRFVTSRKLTKINHALKLFLSLSSTQ
Ga0268266_122731581	3300028379	Switchgrass Rhizosphere	ATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKFTKINHALKLCFVVELEIPP
Ga0268323_10083322	3300028471	Phyllosphere	HLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP
Ga0268327_10111752	3300028475	Phyllosphere	EDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSQKSNKNKSRANPCFVVELDPFLVSSSA
Ga0268329_10140521	3300028476	Phyllosphere	KEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP
Ga0268313_10002214	3300028523	Phyllosphere	HGVKEATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP
Ga0268339_10061501	3300028526	Phyllosphere	EREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKVNRALKFCFVVELEIPP
Ga0214503_12616001	3300032466	Switchgrass Phyllosphere	HGVKEATWEREDALKKEFPHLFKDQSNLEDEIHFKWGRFVTSQKSNKNKSRANPCFVVELDPYLDSSPA
Ga0214488_11259742	3300032467	Switchgrass Phyllosphere	EREDALKKEFPKLFRNEIHFKWGRFVTSQKLTKLNRALKLFFVVELDPYLKP
Ga0214488_11298231	3300032467	Switchgrass Phyllosphere	VEEATWEREDALKKEFPHLFRNQSNLEDEIPFKWGRFVTSRKFTKINHALKLCFIVEL
Ga0214495_11409611	3300032490	Switchgrass Phyllosphere	ATWEREDALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALNFCFVELDPFLGSSPA
Ga0214495_11515641	3300032490	Switchgrass Phyllosphere	VEEATWEREDALKKEFPHLFRSQPNLEDEIHFKWGRFVTSQISNKNKSRANPCSVV
Ga0214490_11141791	3300032502	Switchgrass Phyllosphere	RNSEVRICRVQWSRHGVKEATWESEDALKKEFPHLYRNQPNLEDEIHFKWGRFVTSQKKLTEINHALKLCFVVELEILLKP
Ga0214499_12026722	3300032697	Switchgrass Phyllosphere	ALKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLTKINHALKLCFVVELEFLLKP
Ga0214499_12460081	3300032697	Switchgrass Phyllosphere	LKKEFPHLFRNQSNLEDEIHFKWGRFVTSRKLPKINRALKFCFVVELEIPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065365

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences