Metagenome / Metatranscriptome Family F065343

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065343
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	46 residues
Representative Sequence	MANWKVIALVSGNIEAVSGPAAQGRPGAHEWIVWQGAAADKAEAL
Number of Associated Samples	83
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.20 %
% of genes near scaffold ends (potentially truncated)	77.17 %
% of genes from short scaffolds (< 2000 bps)	76.38 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.906 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (30.709 % of family members)
Environment Ontology (ENVO)	Unclassified (83.465 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (67.717 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.70% β-sheet: 27.40% Coil/Unstructured: 58.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF01986	DUF123	7.09
PF02604	PhdYeFM_antitox	3.15
PF08308	PEGA	2.36
PF04185	Phosphoesterase	1.57
PF13378	MR_MLE_C	1.57
PF01258	zf-dskA_traR	1.57
PF09481	CRISPR_Cse1	1.57
PF13701	DDE_Tnp_1_4	1.57
PF13091	PLDc_2	1.57
PF00756	Esterase	1.57
PF00072	Response_reg	1.57
PF02265	S1-P1_nuclease	0.79
PF07394	DUF1501	0.79
PF11999	Ice_binding	0.79
PF03590	AsnA	0.79
PF14281	PDDEXK_4	0.79
PF01381	HTH_3	0.79
PF13546	DDE_5	0.79
PF01894	UPF0047	0.79
PF13456	RVT_3	0.79
PF13358	DDE_3	0.79
PF13669	Glyoxalase_4	0.79
PF03747	ADP_ribosyl_GH	0.79
PF03928	HbpS-like	0.79
PF03592	Terminase_2	0.79
PF00216	Bac_DNA_binding	0.79
PF01527	HTH_Tnp_1	0.79
PF13282	DUF4070	0.79
PF13586	DDE_Tnp_1_2	0.79
PF13426	PAS_9	0.79
PF00400	WD40	0.79
PF05598	DUF772	0.79
PF01041	DegT_DnrJ_EryC1	0.79
PF03576	Peptidase_S58	0.79
PF09721	Exosortase_EpsH	0.79
PF09485	CRISPR_Cse2	0.79
PF01656	CbiA	0.79
PF10571	UPF0547	0.79
PF14607	GxDLY	0.79
PF02900	LigB	0.79
PF09907	HigB_toxin	0.79
PF00975	Thioesterase	0.79
PF06414	Zeta_toxin	0.79
PF01435	Peptidase_M48	0.79
PF01740	STAS	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1833	Uri superfamily endonuclease	General function prediction only [R]	7.09
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	3.15
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	3.15
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	1.57
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.57
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	1.57
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.79
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.79
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.79
COG2502	Asparagine synthetase A	Amino acid transport and metabolism [E]	0.79
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.79
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.79
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.79
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.79
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.91 %
Unclassified	root	N/A	44.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.91 %
Unclassified	root	N/A	44.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.91 %
Unclassified	root	N/A	44.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.09 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.36 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.09 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.36 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.57 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.57 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Candidatus Handelsmanbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria	2.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.57 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.79 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	2.36 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.57 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
unclassified Chromatiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	2.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.79 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.79 %
Peptostreptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae	0.79 %
Ralstonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	2.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
Paraburkholderia hospita	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	0.79 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.79 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.79 %
Peptostreptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	2.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
Paraburkholderia hospita BS001	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita → Paraburkholderia hospita BS001	0.79 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.79 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.79 %
Peptostreptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10048033	All Organisms → cellular organisms → Bacteria	2580	Open in IMG/M
3300003218\|JGI26339J46600_10012483	All Organisms → cellular organisms → Bacteria	2481	Open in IMG/M
3300009518\|Ga0116128_1031381	Not Available	1759	Open in IMG/M
3300009518\|Ga0116128_1047401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1365	Open in IMG/M
3300009520\|Ga0116214_1030238	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300009547\|Ga0116136_1012149	All Organisms → cellular organisms → Bacteria	3091	Open in IMG/M
3300009548\|Ga0116107_1000945	All Organisms → cellular organisms → Bacteria	19417	Open in IMG/M
3300009548\|Ga0116107_1012049	All Organisms → cellular organisms → Bacteria	3647	Open in IMG/M
3300009548\|Ga0116107_1131542	Not Available	707	Open in IMG/M
3300009552\|Ga0116138_1158245	Not Available	625	Open in IMG/M
3300009615\|Ga0116103_1025857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1825	Open in IMG/M
3300009616\|Ga0116111_1067204	Not Available	978	Open in IMG/M
3300009621\|Ga0116116_1167556	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300009630\|Ga0116114_1183487	Not Available	524	Open in IMG/M
3300009631\|Ga0116115_1101291	Not Available	738	Open in IMG/M
3300009631\|Ga0116115_1129034	Not Available	644	Open in IMG/M
3300009637\|Ga0116118_1118188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300009639\|Ga0116122_1024931	All Organisms → cellular organisms → Bacteria	2122	Open in IMG/M
3300009639\|Ga0116122_1201965	Not Available	622	Open in IMG/M
3300009641\|Ga0116120_1115385	Not Available	879	Open in IMG/M
3300009645\|Ga0116106_1138609	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	780	Open in IMG/M
3300009646\|Ga0116132_1075663	Not Available	1050	Open in IMG/M
3300009646\|Ga0116132_1138857	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300009760\|Ga0116131_1046467	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300009764\|Ga0116134_1168027	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300009839\|Ga0116223_10172139	Not Available	1336	Open in IMG/M
3300010339\|Ga0074046_10011036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6697	Open in IMG/M
3300010341\|Ga0074045_10161045	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300010379\|Ga0136449_100897246	Not Available	1445	Open in IMG/M
3300010379\|Ga0136449_101877093	Not Available	892	Open in IMG/M
3300010379\|Ga0136449_102999879	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300010379\|Ga0136449_103247788	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300014151\|Ga0181539_1281943	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300014152\|Ga0181533_1027753	All Organisms → cellular organisms → Bacteria	3373	Open in IMG/M
3300014152\|Ga0181533_1031061	All Organisms → cellular organisms → Bacteria	3097	Open in IMG/M
3300014152\|Ga0181533_1112871	All Organisms → cellular organisms → Bacteria → Acidobacteria	1182	Open in IMG/M
3300014155\|Ga0181524_10016980	All Organisms → cellular organisms → Bacteria	5511	Open in IMG/M
3300014158\|Ga0181521_10277358	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300014159\|Ga0181530_10312365	Not Available	821	Open in IMG/M
3300014159\|Ga0181530_10609302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	533	Open in IMG/M
3300014160\|Ga0181517_10078783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1955	Open in IMG/M
3300014164\|Ga0181532_10477433	Not Available	685	Open in IMG/M
3300014165\|Ga0181523_10522159	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300014165\|Ga0181523_10758882	Not Available	529	Open in IMG/M
3300014490\|Ga0182010_10180168	Not Available	1100	Open in IMG/M
3300014494\|Ga0182017_10974723	Not Available	509	Open in IMG/M
3300014496\|Ga0182011_10130590	Not Available	1741	Open in IMG/M
3300014496\|Ga0182011_10592491	Not Available	706	Open in IMG/M
3300014496\|Ga0182011_10737928	Not Available	619	Open in IMG/M
3300014498\|Ga0182019_10561053	Not Available	798	Open in IMG/M
3300014638\|Ga0181536_10136948	Not Available	1311	Open in IMG/M
3300016750\|Ga0181505_10626854	Not Available	1481	Open in IMG/M
3300017925\|Ga0187856_1001915	All Organisms → cellular organisms → Bacteria	15940	Open in IMG/M
3300017925\|Ga0187856_1032450	All Organisms → cellular organisms → Bacteria	2465	Open in IMG/M
3300017929\|Ga0187849_1002141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	19416	Open in IMG/M
3300017929\|Ga0187849_1007861	All Organisms → cellular organisms → Bacteria → Acidobacteria	7695	Open in IMG/M
3300017929\|Ga0187849_1375989	Not Available	522	Open in IMG/M
3300017931\|Ga0187877_1079265	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300017931\|Ga0187877_1127805	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300017934\|Ga0187803_10248263	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300017938\|Ga0187854_10330901	Not Available	647	Open in IMG/M
3300017940\|Ga0187853_10254231	Not Available	806	Open in IMG/M
3300017941\|Ga0187850_10447294	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	561	Open in IMG/M
3300017972\|Ga0187781_10797361	Not Available	685	Open in IMG/M
3300017988\|Ga0181520_10951573	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	570	Open in IMG/M
3300017996\|Ga0187891_1039469	All Organisms → cellular organisms → Bacteria → Acidobacteria	2051	Open in IMG/M
3300017996\|Ga0187891_1086875	Not Available	1209	Open in IMG/M
3300017996\|Ga0187891_1249626	Not Available	590	Open in IMG/M
3300017998\|Ga0187870_1255126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita → Paraburkholderia hospita BS001	600	Open in IMG/M
3300017998\|Ga0187870_1256227	Not Available	598	Open in IMG/M
3300018002\|Ga0187868_1029522	Not Available	2524	Open in IMG/M
3300018004\|Ga0187865_1002201	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	19417	Open in IMG/M
3300018008\|Ga0187888_1015122	All Organisms → cellular organisms → Bacteria	4281	Open in IMG/M
3300018009\|Ga0187884_10320961	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300018015\|Ga0187866_1016175	All Organisms → cellular organisms → Bacteria	3959	Open in IMG/M
3300018015\|Ga0187866_1079907	Not Available	1395	Open in IMG/M
3300018015\|Ga0187866_1282337	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300018016\|Ga0187880_1437726	Not Available	542	Open in IMG/M
3300018017\|Ga0187872_10144877	Not Available	1142	Open in IMG/M
3300018017\|Ga0187872_10294378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	712	Open in IMG/M
3300018021\|Ga0187882_1142703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300018021\|Ga0187882_1159982	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300018023\|Ga0187889_10327895	Not Available	672	Open in IMG/M
3300018024\|Ga0187881_10114538	Not Available	1205	Open in IMG/M
3300018033\|Ga0187867_10269804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae	956	Open in IMG/M
3300018040\|Ga0187862_10490369	Not Available	741	Open in IMG/M
3300018040\|Ga0187862_10640879	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300018040\|Ga0187862_10916630	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300018043\|Ga0187887_10294075	All Organisms → cellular organisms → Bacteria → Proteobacteria	960	Open in IMG/M
3300018047\|Ga0187859_10129781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1331	Open in IMG/M
3300018062\|Ga0187784_10146035	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300018086\|Ga0187769_10626255	Not Available	813	Open in IMG/M
3300018086\|Ga0187769_11095723	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300018088\|Ga0187771_10105598	All Organisms → cellular organisms → Bacteria	2275	Open in IMG/M
3300019082\|Ga0187852_1040066	All Organisms → cellular organisms → Bacteria → Acidobacteria	2220	Open in IMG/M
3300019082\|Ga0187852_1390514	Not Available	544	Open in IMG/M
3300021046\|Ga0215015_10723608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	575	Open in IMG/M
3300022830\|Ga0224515_1027968	Not Available	806	Open in IMG/M
3300025409\|Ga0208321_1056551	Not Available	575	Open in IMG/M
3300025439\|Ga0208323_1064573	Not Available	634	Open in IMG/M
3300025442\|Ga0208034_1010695	All Organisms → cellular organisms → Bacteria → Acidobacteria	3079	Open in IMG/M
3300025454\|Ga0208039_1092468	Not Available	524	Open in IMG/M
3300025460\|Ga0208562_1060933	Not Available	796	Open in IMG/M
3300025472\|Ga0208692_1105949	Not Available	547	Open in IMG/M
3300025496\|Ga0208191_1013790	All Organisms → cellular organisms → Bacteria → Acidobacteria	2124	Open in IMG/M
3300025496\|Ga0208191_1023259	All Organisms → cellular organisms → Bacteria → Proteobacteria	1476	Open in IMG/M
3300025501\|Ga0208563_1068853	Not Available	719	Open in IMG/M
3300025501\|Ga0208563_1091966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300026451\|Ga0247845_1016460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1220	Open in IMG/M
3300027641\|Ga0208827_1159727	Not Available	621	Open in IMG/M
3300027854\|Ga0209517_10007836	All Organisms → cellular organisms → Bacteria	12656	Open in IMG/M
3300030659\|Ga0316363_10379145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	553	Open in IMG/M
3300032160\|Ga0311301_10136596	All Organisms → cellular organisms → Bacteria → Acidobacteria	4517	Open in IMG/M
3300032160\|Ga0311301_12082070	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300032160\|Ga0311301_12235956	Not Available	626	Open in IMG/M
3300032160\|Ga0311301_12363188	Not Available	602	Open in IMG/M
3300032160\|Ga0311301_12947903	Not Available	514	Open in IMG/M
3300032163\|Ga0315281_10918111	Not Available	894	Open in IMG/M
3300033402\|Ga0326728_10027512	All Organisms → cellular organisms → Bacteria	9942	Open in IMG/M
3300033402\|Ga0326728_10040842	All Organisms → cellular organisms → Bacteria → Acidobacteria	7241	Open in IMG/M
3300033402\|Ga0326728_10043287	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6901	Open in IMG/M
3300033402\|Ga0326728_10264746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1617	Open in IMG/M
3300033402\|Ga0326728_10402802	Not Available	1168	Open in IMG/M
3300033402\|Ga0326728_10471530	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300033402\|Ga0326728_11065330	Not Available	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	70.08%
Terrestrial	Environmental → Terrestrial	29.92%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	70.08%
Soil	Environmental → Terrestrial → Soil	22.83%
Peat	Environmental → Terrestrial → Peat	7.09%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	69.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.09%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	42.52%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	25.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.51%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	30.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	25.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	11.02%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	5.51%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	4.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.57%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300022830	Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T-25	Environmental	Open in IMG/M
3300025409	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150 (SPAdes)	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025454	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes)	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300026451	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T-25	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100480333	3300001356	Peatlands Soil	MCNWKVIALISGDIEAVSGPAAQDRPGRHESVMWERQAAEKAEALQRAEGSPA*
JGI26339J46600_100124834	3300003218	Bog Forest Soil	MADWKVIALVSGNIEAVSGPAAQDRPGAHEWTVWEGTAANKA*
Ga0116128_10313815	3300009518	Peatland	MANWKVIALVNGDIEALSGPAAQDRPGAHEWIVWEGT
Ga0116128_10474011	3300009518	Peatland	MANWKVIALVNGDIEAVSGPAAQDRPGAHEWMVWQGPAADKAEALQSAEKADSRLLMRV*
Ga0116214_10302381	3300009520	Peatlands Soil	MANWKVIALISGNIEAVSGPAAQDRPGAHEWIVWEG*
Ga0116136_10121497	3300009547	Peatland	AHWKVIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRRRD*
Ga0116107_100094521	3300009548	Peatland	MANGKVIALVNGDIEADSGPAAQDRPRAHEWVVWQGTAADKA*
Ga0116107_10120492	3300009548	Peatland	MAYWKVIALINGDIEALSGPAAQDRPGAHEWIVWEGTASDKAEALQSAEKPIPGST*
Ga0116107_11315421	3300009548	Peatland	MAIWKVIALVSGNTEAVSGPAAQVRPGTHEWMVWQGPAADKAEALQSAEKSDP
Ga0116138_11582451	3300009552	Peatland	MANWKVIALVSGNIEAVSGPAAEDRPGAHEWVVWQGTAADK
Ga0116103_10258572	3300009615	Peatland	MATWKVIALINGEIEAVSGSPAQDRPGALEWMVWQGAAADK
Ga0116111_10672043	3300009616	Peatland	MDNHMSSWKVIALINDEIEAITGPAAQDRPGAHEEMVWQGKAADKGE
Ga0116116_11675561	3300009621	Peatland	MANWKVIALINGEIEAVSGPAAKGRTGAHEWIVWEGPAADK
Ga0116114_11834872	3300009630	Peatland	MSSWKVIALINGEIEAVTGPGAQERPGAHEGMVWQGSAADKGEALQSAEK
Ga0116115_11012911	3300009631	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPGAHEWMVWQGTAADKAEALQSAEKADPRVD
Ga0116115_11290341	3300009631	Peatland	MSSWKVIALISGEIEAVSGPDAQDRPGTHEGMVWQGTAADKGEALQCAEK
Ga0116118_11181881	3300009637	Peatland	MADWKVIALGNGDIEAVSGPAAQYRPGAHEWIVSQGTAA
Ga0116122_10249311	3300009639	Peatland	VIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRRRD*
Ga0116122_12019651	3300009639	Peatland	MANWKVIALVSGEIEAVSGPAAQDRPGAHEWIVWHGTAADKAEALQSAEKADPRV
Ga0116120_11153852	3300009641	Peatland	MPSWKVIALINDEIEAVTGPDAQDRPGAHEWMVWQGTAADKGEALQ
Ga0116106_11386092	3300009645	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPGTHEWIVWEGQASDKGPRRRD*
Ga0116132_10756632	3300009646	Peatland	MAHWKVIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRRRD*
Ga0116132_11388572	3300009646	Peatland	MANWKVIARINGEIEAVSGPAAHDRPGAYEWTVWEGTAADKGEALHSAEKA
Ga0116131_10464671	3300009760	Peatland	MANWKVIALVSGNIEAVSGPAAEDRPGAHEWVVWQ
Ga0116131_11517752	3300009760	Peatland	NGDIEALSGPAAQDRPGAHEWIVWEGTASDKAEALQSAEKPIPGLT*
Ga0116134_11680271	3300009764	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPGTHEWTVWEGPAGDKAEALQSA*
Ga0116223_101721392	3300009839	Peatlands Soil	MADWKVITLVSGNIEAVSGPAAQDRPGAHEWIVWEG*
Ga0074046_100110363	3300010339	Bog Forest Soil	MANWKVIALINSDIEAVTGPAAQDRPGAHEWMVLARESR*
Ga0074045_101610451	3300010341	Bog Forest Soil	MATWKVIETVSGNIEAVSGQGAQQRPGTHERTVWEGQAADKAEALKCAE
Ga0136449_1008972461	3300010379	Peatlands Soil	MATWKVIETVSGNIEAVSGPAAEHRPAVHEFIVWEG*
Ga0136449_1018770931	3300010379	Peatlands Soil	MTYWKVIALISGNIEAVSGPAAQDRPRTHEWTVWEGPAADKAEALKSAEKA
Ga0136449_1029998791	3300010379	Peatlands Soil	MAHWKVIALVSGNIEAVSGPGAQDRPGAHEWMVWQG
Ga0136449_1032477882	3300010379	Peatlands Soil	MARKIDNHMPSWKVIALINDEIEAVTGPAAQDRPGAHEEMVWQGKAADKGEALQCAEKAD
Ga0181539_12819433	3300014151	Bog	MPTSKVIETVSGNIEAVSGPASQGRPGTHEFLVWE
Ga0181533_10277533	3300014152	Bog	MANWKVIPLINGDIEAVSGPAAQDRSGAHEWIVWQGKAAGKD*
Ga0181533_10310616	3300014152	Bog	MAHWKVIALVNGQIEAVSGPAAQDRPGAREWIVWEGPAADKAEALQSAEKADPRV
Ga0181533_11128712	3300014152	Bog	MANWKVIALINGNIEAVSGPAAQDRPSKHTFLVWQGTAGDKAAALQSAEKA
Ga0181524_100169808	3300014155	Bog	MADWKVIALINGDIEAVSGPAAQGRPGTHEWIVWEGQAGDKAEALQSAEKA
Ga0181521_102773582	3300014158	Bog	MATWKVIETVSGNIEAVSGPHAQDRPGTHERIVWEGQAADKAE
Ga0181530_103123652	3300014159	Bog	MANRKVIALVSGNIEAVSGPAAQDRQGTHKWLVRQGATADKAESL
Ga0181530_106093021	3300014159	Bog	MATWKVIALVSGNIEAVSGPSAQNRPAAHEWIVWQGPAADKAEALKCAEKADPR
Ga0181517_100787831	3300014160	Bog	MATWKVIARVSGNLEAVSVPAAQDRPGTHEWPVWEGQAADKAELCDC*
Ga0181532_104774332	3300014164	Bog	MANWKVIALVSGNIEAVSGPAAQDRPETHEWIVWEGQAADKAEA
Ga0181523_105221591	3300014165	Bog	MAHWKVIALINGEIEAVSGPAAHNRPGAHEWIVWEGEAA
Ga0181523_107588821	3300014165	Bog	MTDWKVIALVSGNIEAVCGPAAQDRPGLHEWTVWEGPAVDKAEALQRAEK
Ga0182010_101801682	3300014490	Fen	MANWKVIALVSGNIEAISGPAAQDRPGAHEWIVWQGSAADKAEALQSAEKA
Ga0182017_109747232	3300014494	Fen	MATWKVIALVSGNIEAVSGPAAQDRPGAYEWIVWQGEAADKA
Ga0182011_101305902	3300014496	Fen	MATWKVIETVSGNIEAVSGPASQDRPGTHEWIVWEGPAADKAAAAAA*
Ga0182011_105924911	3300014496	Fen	MANWRVVVLVSGNIEAVSGPAAQDRPGAHEWTVWEGQAADKAEALQCA
Ga0182011_107379282	3300014496	Fen	MDNHMANWKVVALVSGNIEAVSGPAAQDRPGTHEWTVWEGQAADKAEALQCA
Ga0182019_105610532	3300014498	Fen	MPSWKVIALINDEIEAVSGPAAQDRPGLHEEMVWQGTAADKGEALQ
Ga0181536_101369481	3300014638	Bog	NWKVIALVSGNIEAVAGPDAQDRPGNHERIVWDSPATDKAEAFGGLT*
Ga0181505_106268542	3300016750	Peatland	MADWKVIETVSGNIEAISGPVAHDRPGRHEQTVWEGEAADKAEALQSAEK
Ga0187856_100191523	3300017925	Peatland	AHWKVIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRRRD
Ga0187856_10324501	3300017925	Peatland	MAHWKVIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDK
Ga0187849_10021413	3300017929	Peatland	MANGKVIALVNGDIEADSGPAAQDRPRAHEWVVWQGTAADKA
Ga0187849_100786110	3300017929	Peatland	MAYWKVIALINGDIEALSGPAAQDRPGAHEWIVWEGTASDKAEALQSAEKPIPGST
Ga0187849_13759891	3300017929	Peatland	MSSWKVIALINGEIEAVTGPGAQERPGAHEGMVWQGSAA
Ga0187877_10792652	3300017931	Peatland	MATWKVIALINGDIEAVSGPAAQGRPGAHEWIVWEGPAADKAEALQSAEK
Ga0187877_11278053	3300017931	Peatland	MAHWKVIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRR
Ga0187803_102482632	3300017934	Freshwater Sediment	MAHWKVIALISGNIEAVSGPAAQDRPGSHEWIIWEGQAADKPEALKCAEKAD
Ga0187854_103309012	3300017938	Peatland	MANWKVIALVSGEIEAVSGPAAQDRPGAHEWIAWQ
Ga0187853_102542312	3300017940	Peatland	MANWKVIALVSGNIEAVSGPAAQNRPGAHEWVVSEGQTAGKAEALKCAEK
Ga0187850_104472942	3300017941	Peatland	MANWKVIALVSGNIEAVSGPAAQGRPGAHEWIVWQGAAADKAEAL
Ga0187781_107973611	3300017972	Tropical Peatland	MATWKIIETVSGNIEAVSGSAALHRPGQHEFLVWEGEAADKAEALKCAEKAD
Ga0181520_109515732	3300017988	Bog	MANWKVIALVSGNIEAVSGPAAQDRPGTHEWIVWEGQAADKSAALQSAE
Ga0187891_10394692	3300017996	Peatland	MASWKVIETVGGNIEAVSGPAAQDRPGTHEWSARDGQAADKAELCACCPW
Ga0187891_10868754	3300017996	Peatland	MSNWKVIALVSGNIEAVSGPAAQDRPGAHEWTVWEGIVANKAEALQSAEKA
Ga0187891_12496262	3300017996	Peatland	MANWKVIEIVSGNIEAVSGPAAETRPGTHERLVWEGPAADKAEAFQSADKVRWKRSAFC
Ga0187870_12551261	3300017998	Peatland	MANWKVIALINGEIEAVSGPAAKGRTGAHEWIVWEGPAADKGDPTPLQ
Ga0187870_12562271	3300017998	Peatland	MANWKVIALVSGEIEAVSGPAAQDRPGAHEWIAWQGTAADKAQALQSAEKVE
Ga0187868_10295221	3300018002	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPGAHEWMVWQGKAADKAEALQSAEKADPR
Ga0187865_100220110	3300018004	Peatland	MANGKVIALVNGDIEADSGPAAQDRPRAHERVVWQGTAADKA
Ga0187888_10151226	3300018008	Peatland	MAYWKVIALVSGNIEAVSGPAAQDRPGAHEWTVWQGQAADRAE
Ga0187884_100764012	3300018009	Peatland	MANWKVIALINGDIEALSGPAAQDRPGAHEWIVWEGTASDKAEALQSAEKPIPGLT
Ga0187884_103209611	3300018009	Peatland	MNIGNLMTYGKVIALVNGEIEAVSGPAAQDRPVAHEWIVWEGTASDKSEALQ
Ga0187866_10161751	3300018015	Peatland	MAYWKVIALVSGNIEAVSGPAAQDRPGAHEWTVWEGTAANKAEALQSAEKADPRV
Ga0187866_10799071	3300018015	Peatland	MATWKVIALVNGEIEALSGPAAQDRPGAHEWIVWQGLAADKAEALQSAEKADPRVD
Ga0187866_12823371	3300018015	Peatland	MANWKVIALINGEIEAVSGPAAKGRTGAHEWIVWEGP
Ga0187880_14377261	3300018016	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPGAHEWIVWQGQAADKAEALQSAEKAD
Ga0187872_101448771	3300018017	Peatland	MAPWKVIALSNGEIEAVSGPDAQNRPGAHEWMVWQGTAADKG
Ga0187872_102943783	3300018017	Peatland	MANWKVIEIVSGNIEAVSGPAAGPRPGTHERLVWEGEAADK
Ga0187882_11427033	3300018021	Peatland	MAHWKVIALINGEIEAVSGPAAHDRPGAHEWIVWE
Ga0187882_11599821	3300018021	Peatland	MAHWKVIALVSGNIEAVSGPTAQDRPGAHEWTVWEGPAANKAEALKC
Ga0187889_103278951	3300018023	Peatland	MANWKVIALVNGDIEAVSGPAAQDQPGAHEWMVWQGKAGDFPVP
Ga0187881_101145382	3300018024	Peatland	MANWKVIALVNGDIEAVSGLAAQDRPRAHEWTVWQGPAADKAEALQSAEKADP
Ga0187867_102698042	3300018033	Peatland	VVSINTEAGPGPAAQDQLGTHEWIVWKGQATDKAEALQSAE
Ga0187862_104903692	3300018040	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPGTHEWIVWEGSAADKAEALQSAEKADPR
Ga0187862_106408792	3300018040	Peatland	MAYWKVIALINGDIEAVSGPAAQDRPGAHEWMVWQGTAADKAEA
Ga0187862_109166302	3300018040	Peatland	MANWKVIALISGNIEAVSGPAAQDRPGAHEWTVWEGPAADKAEALQSAEK
Ga0187887_102940751	3300018043	Peatland	MANWKVIEIVSGNIEAVSGPAAGTRPGTHERLVWEGEA
Ga0187859_101297813	3300018047	Peatland	MANWKVIALVSGNIEAVSGPAAQDRPETHEWIVWEG
Ga0187784_101460353	3300018062	Tropical Peatland	MAYWKVITLINGAIEAVSGSAANDRPDVHEWTVWE
Ga0187769_106262552	3300018086	Tropical Peatland	MANWKVVALINGEIEAVSAPDAQDRPRAHEWVVWEGEAAD
Ga0187769_110957231	3300018086	Tropical Peatland	MATWKVIETVSGNIEAVSGSPAQHRPAKHKFLVWEGATADKAE
Ga0187771_101055985	3300018088	Tropical Peatland	MATWRVTETVSGNIEAVSGLAAQDRPSKHEFVVWELSSEVNR
Ga0187852_10400662	3300019082	Peatland	MANWKVVALVNGEIEALSGPAAQDRPGAHEWIVWQGTAADKAQALQVQRKPIPGST
Ga0187852_13905141	3300019082	Peatland	MVRSIDNHMSSWKVIALINGEIEAVTGPGAQERPGAHEGMVWQGTAADKGEALQSA
Ga0215015_107236081	3300021046	Soil	MADWKVIAVMNGQIEAVPGPDAQDRPGTHEWTCLLYTS
Ga0224515_10279681	3300022830	Soil	MANWKVIALVSGNIEAISGPAAQDLPGAHEWIVWQGSAADKAEALQ
Ga0208321_10565512	3300025409	Peatland	MATWKVIALINGNIEGVSGPAAQDRPGAHEWMVWQGPAADKAEALQSAEKADSRLLMRV
Ga0208323_10645731	3300025439	Peatland	MSSWKVIALISGEIEAVSGPDAQDRPGTHEGMVWQGTAADKGEALQ
Ga0208034_10106951	3300025442	Peatland	RMAHWKVIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRRRD
Ga0208039_10924681	3300025454	Peatland	MANWKVIALVSGNIEAVSGPAAEDRPGAHEWVVWQGTA
Ga0208562_10609331	3300025460	Peatland	MAIWKVIALVSGNTEAVSGPAAQVRPGTHEWMVWQGPAADKAEALQSAEKS
Ga0208692_11059491	3300025472	Peatland	MANWKVVALINGAIEAVTGSAAQDRPGAHEWLVWQGTAA
Ga0208191_10137901	3300025496	Peatland	VIALVSGNIEAVSGPAAQGRPGTHEWIVWEGQASDKGPRRRD
Ga0208191_10232594	3300025496	Peatland	MANWKVIALVSGNIEAVSGPAAQNRPGAHEWVVSEGQTAGKAE
Ga0208563_10688532	3300025501	Peatland	MAIWKVIALVSGNTEAVSGPAAQVRPGTHEWMVWQGPAADKAEA
Ga0208563_10919661	3300025501	Peatland	MANWKVIALINGDIEAVSGPAAQGRPGAHEWMVWQGKAADKAEALQSAEKPIPGST
Ga0247845_10164601	3300026451	Soil	MANWKVIALVSGNIEAISGPAAQDRPGAHEWMVWQGE
Ga0208827_11597271	3300027641	Peatlands Soil	NLGKPMCNWKVIALISGDIEAVSGPAAQDRPGRHESVMWERQAAEKAEALQRAEGSPA
Ga0209517_100078365	3300027854	Peatlands Soil	MCNWKVIALISGDIEAVSGPAAQDRPGRHESVMWERQAAEKAEALQRAEGSPA
Ga0316363_103791452	3300030659	Peatlands Soil	MADWKVIALVSGNIEAVSGPAAQDRPGAHEWTVWEGTAANKAEALQSAEKADPRVD
Ga0311301_101365961	3300032160	Peatlands Soil	MADWKVITLVSGNIEAVSGPAAQDRPGAHEWIVWEG
Ga0311301_120820701	3300032160	Peatlands Soil	MAHWKVIALVSGNIEAVSGPGAQDRPGAHEWMVWQ
Ga0311301_122359561	3300032160	Peatlands Soil	MATWKVIETVSGNIEAVSGPPAQHRPGTHERIVREGEAAGKAEALK
Ga0311301_123631881	3300032160	Peatlands Soil	MDNHMANWKVVALVSGNIEAVSGPAAQDRPGTHEWTVWEGQAADK
Ga0311301_129479032	3300032160	Peatlands Soil	MVRQMDNHMSSWKVIALINDEIEAVTGPDAQDRPGAHEEMVWQGKAADK
Ga0315281_109181111	3300032163	Sediment	MANWKVIALVNGEIEAVSGPAAQDRPGAHEWIVWQGP
Ga0326728_100275121	3300033402	Peat Soil	MANWKVIEIVSGNIEAVSGPAAGTRPGTHERLVWEGEAADKAEALQKAEKADPR
Ga0326728_1004084211	3300033402	Peat Soil	MAHWKVIALVNGEIEAVSGPAAQDRPGAHEWIVWQGIAADKAEALQSAEKADP
Ga0326728_100432877	3300033402	Peat Soil	MSNWKVIALVRGNIEAVSGPAAQDRPGRHESVMWEGQAAEKAEALQRAEGSPA
Ga0326728_102647462	3300033402	Peat Soil	MADWKVIALVSGEIEAVSGPAAQDRPGAHEWMVWEG
Ga0326728_104028021	3300033402	Peat Soil	MPHWKVIALVNGQIEAVSGPAAQDRPGAHEWIVWQGTA
Ga0326728_104715301	3300033402	Peat Soil	MVHWKVIALVSGAIEAVSGPAAQDRPGAHEWIVWEGPAAD
Ga0326728_110653302	3300033402	Peat Soil	MPSWKVIALINDEIEAVSGPAAQDRPGTHEEMVWQGTAADKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065343

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences