Metagenome / Metatranscriptome Family F065156

Basic Information
Family ID	F065156
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	55 residues
Representative Sequence	PARMLGISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFELPRGE
Number of Associated Samples	120
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	25.78 %
% of genes from short scaffolds (< 2000 bps)	26.56 %
Associated GOLD sequencing projects	119
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (75.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.875 % of family members)
Environment Ontology (ENVO)	Unclassified (28.125 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.656 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.70% β-sheet: 23.46% Coil/Unstructured: 72.84%
Feature Viewer

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Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF07883	Cupin_2	9.38
PF06224	HTH_42	4.69
PF01243	Putative_PNPOx	3.91
PF02566	OsmC	3.12
PF00561	Abhydrolase_1	3.12
PF00903	Glyoxalase	2.34
PF08327	AHSA1	1.56
PF00768	Peptidase_S11	1.56
PF00583	Acetyltransf_1	1.56
PF03309	Pan_kinase	1.56
PF07332	Phage_holin_3_6	0.78
PF13669	Glyoxalase_4	0.78
PF01011	PQQ	0.78
PF02784	Orn_Arg_deC_N	0.78
PF14023	DUF4239	0.78
PF12836	HHH_3	0.78
PF14534	DUF4440	0.78
PF13508	Acetyltransf_7	0.78
PF12681	Glyoxalase_2	0.78
PF13632	Glyco_trans_2_3	0.78
PF02609	Exonuc_VII_S	0.78
PF00753	Lactamase_B	0.78
PF02702	KdpD	0.78
PF04140	ICMT	0.78
PF01565	FAD_binding_4	0.78
PF00392	GntR	0.78
PF13302	Acetyltransf_3	0.78
PF04134	DCC1-like	0.78
PF02646	RmuC	0.78
PF02163	Peptidase_M50	0.78
PF03781	FGE-sulfatase	0.78
PF00174	Oxidored_molyb	0.78
PF03480	DctP	0.78
PF01641	SelR	0.78
PF03795	YCII	0.78
PF13561	adh_short_C2	0.78
PF00196	GerE	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	4.69
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	3.12
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	3.12
COG1521	Pantothenate kinase type III	Coenzyme transport and metabolism [H]	1.56
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.56
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	0.78
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	0.78
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.78
COG1722	Exonuclease VII small subunit	Replication, recombination and repair [L]	0.78
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.78
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	0.78
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.78
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.78
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
All Organisms	root	All Organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
cellular organisms	root	All Organisms → cellular organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	20.31 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.75 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.84 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.50 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.78 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.78 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.50 %
Tianweitania	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Tianweitania	0.78 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.78 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.50 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.78 %
Tianweitania sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Tianweitania → Tianweitania sediminis	0.78 %
Polymorphospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Polymorphospora	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.50 %
Polymorphospora rubra	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Polymorphospora → Polymorphospora rubra	0.78 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.78 %
Tianweitania sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Tianweitania → Tianweitania sediminis	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918007\|ConsensusfromContig30888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Tianweitania → Tianweitania sediminis	950	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14184526	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300000891\|JGI10214J12806_11683298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300004081\|Ga0063454_100906830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300004463\|Ga0063356_100318037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1943	Open in IMG/M
3300005364\|Ga0070673_100546287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1052	Open in IMG/M
3300006163\|Ga0070715_10617138	Not Available	638	Open in IMG/M
3300006605\|Ga0074057_11983664	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300006881\|Ga0068865_101490239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300010147\|Ga0126319_1004814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1020	Open in IMG/M
3300010371\|Ga0134125_11633095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Polymorphospora → Polymorphospora rubra	701	Open in IMG/M
3300010400\|Ga0134122_11761537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300012021\|Ga0120192_10084471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300012501\|Ga0157351_1050473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300012916\|Ga0157310_10046592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1241	Open in IMG/M
3300012977\|Ga0134087_10264137	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300013770\|Ga0120123_1098147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300014497\|Ga0182008_10087425	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300017792\|Ga0163161_11128422	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300018027\|Ga0184605_10542817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300018082\|Ga0184639_10653585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300018432\|Ga0190275_10646168	Not Available	1110	Open in IMG/M
3300018469\|Ga0190270_11477987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	728	Open in IMG/M
3300025795\|Ga0210114_1076590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	682	Open in IMG/M
3300025920\|Ga0207649_10422792	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1001	Open in IMG/M
3300025928\|Ga0207700_10329443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1325	Open in IMG/M
3300025934\|Ga0207686_10539489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	910	Open in IMG/M
3300028710\|Ga0307322_10076637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	841	Open in IMG/M
3300028799\|Ga0307284_10380244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300028876\|Ga0307286_10403025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300031226\|Ga0307497_10408799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300031595\|Ga0265313_10197369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	839	Open in IMG/M
3300032013\|Ga0310906_11381085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300033433\|Ga0326726_12028054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.69%
Host-Associated	Host-Associated	20.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.75%
Plants	Host-Associated → Plants	20.31%
Aquatic	Environmental → Aquatic	10.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.41%
Sediment	Environmental → Aquatic → Sediment	5.47%
Freshwater	Environmental → Aquatic → Freshwater	4.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.91%
Marine	Environmental → Aquatic → Marine	0.78%
Peat	Environmental → Terrestrial → Peat	0.78%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.16%
Loam	Environmental → Terrestrial → Soil → Loam	7.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.47%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.12%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.34%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.56%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.56%
Lake	Environmental → Aquatic → Freshwater → Lake	0.78%
Ice	Environmental → Aquatic → Freshwater → Ice	0.78%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.56%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.78%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.47%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.12%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.12%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.34%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.56%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.56%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.78%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.78%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.78%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.78%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012091	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_03093790	2140918007	Soil	FSNPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASDD
E4A_09717800	2170459003	Grass Soil	EPVRMLGISTKRFPDVLVYPERGVAWVATRHPERPLPEGGDEGVIARLEVAADD
ICChiseqgaiiFebDRAFT_141845261	3300000363	Soil	FSNQTDEQSSLLGISSKRFPDVVAYPEQGFAWVATRHPERRVPEGGDKGIIARFDLPRGE
JGI10213J12805_110447273	3300000858	Soil	EPVRMLGISTKRFPDVVAYPERGVAWVATRHPERAVPEGGDKGVIARFEFPADD*
JGI10214J12806_116467052	3300000891	Soil	SSKRFPDVVAYPEQGVAWVATRHPERRVPEGGDKGIIARFDLPHSE*
JGI10214J12806_116832982	3300000891	Soil	TFSNPTPEPARMLGISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFELPRGE*
JGI10216J12902_1052961882	3300000956	Soil	MLGVSTKRFPDVLAYPERGVAWVATRHPERPVPEGGDQGVIARFELAPDD*
JGI10216J12902_1155206612	3300000956	Soil	TTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPDGGDEGVIARFDLPDTS*
Ga0063454_1009068302	3300004081	Soil	HTFSNPTDEPARMLGISSKRFPDVVAYPERGVAWVATRHPERALPEGGDEGVIARFELPPRD*
Ga0062593_1002672621	3300004114	Soil	NPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPERGDEGVIARFELASDD*
Ga0062593_1009905381	3300004114	Soil	VSSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFEMPPEG*
Ga0062593_1032267712	3300004114	Soil	PARMLGISAKRFPDVVAYPERGVAWVATRHPERPVPEGADEGIIARFELPRAE*
Ga0062590_1014040391	3300004157	Soil	MLGISTKRFPDVVAYPERGVAWVATRHPERPVREGGDEGVIARFELASHD*
Ga0063356_1003180374	3300004463	Arabidopsis Thaliana Rhizosphere	TDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELTSDD*
Ga0062595_1010132651	3300004479	Soil	GISSKRFPDVVAYPEQGVAWVATRHPERRVSEGGDEGIIARFDLPRGE*
Ga0062594_1017365911	3300005093	Soil	PTDEPVRMIGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDRGVIARFELPPDE*
Ga0066388_1019126411	3300005332	Tropical Forest Soil	IGISTKRFPDVVAYPERGVAWVATRHPERAVPDGGDEGVIARFELPEED*
Ga0066388_1030349622	3300005332	Tropical Forest Soil	LGISTKRFPDVVAYPERGVAWVATRHPERPVREDADDGIIARFELPPPQSGR*
Ga0070669_1019580911	3300005353	Switchgrass Rhizosphere	DEPARMIGISSKRFPDVVAYPERGVAWVATRHPERAVPDGGDEGIIARFELPGESASN*
Ga0070673_1005462871	3300005364	Switchgrass Rhizosphere	TFSNPTDEPVRVVGISTKRFPDVVAYPERGVAWVATRHPERPIPEGGDEGVIARFELAADD*
Ga0070701_105131802	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	RMLGISTKRFPDVVAYPERGVAWVATRHPERPVGEGGDEGVIARFEFSDTES*
Ga0070708_1019931332	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	DEPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGVIARFELPGAE*
Ga0070685_110948471	3300005466	Switchgrass Rhizosphere	ILGISTKRFPDVVAYPERGVAWVATRHPERPVAEGGDEGIIARFEFHPDEWHCMID*
Ga0070684_1001714364	3300005535	Corn Rhizosphere	GISTKRFPDVVAYPERGVAWVATRHPERPIPEGGDEGVIARFELAADD*
Ga0066670_107726133	3300005560	Soil	FSNPTDEPVRLLGISTKRFPDVVAYPERGVAWVATRHPERPVPKDADEGIIARFDLPRDE
Ga0066693_100793024	3300005566	Soil	RMIAVSSKRFPDVVAYPEAGYAWVATRHPERPVPEGGDEGIIARFDLP*
Ga0066702_106875833	3300005575	Soil	KRFPDVVAYPERGLAWVATRHPERRVPEGEDEGIIARFDLPPSQDLR*
Ga0070715_106171381	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VFSNPTDEPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGIIARFELTEAE*
Ga0074047_119725792	3300006576	Soil	RLLAVSSKRFPDVVAYPERGVAWVATRHPERPVPEGGDDGIIARFDIPIE*
Ga0074049_127947852	3300006580	Soil	GVSTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASDD*
Ga0074057_119836642	3300006605	Soil	EVLRRLHDEPVRVVGISTKRFPDVVAYPERGVAWVATRHPERPVSEGGDEGVIARFELAADD*
Ga0075428_1016666121	3300006844	Populus Rhizosphere	PTSEPARVLGISSKRFPDVVAYPERGVAWVATRHPERPVPEGADQGIIARFELP*
Ga0075433_116315922	3300006852	Populus Rhizosphere	EPVRLLGISTKRFPDVVAYPERGVAWVATRHPERPIPDGGDEGVIARFELPPDD*
Ga0075434_1022098371	3300006871	Populus Rhizosphere	PTDEPVRLLGISTKRFPDVVAYPERGVAWVATRHPERPVGESGDKGIIARFELPPDQ*
Ga0068865_1014902392	3300006881	Miscanthus Rhizosphere	FSNPTGETVRLLAVSSKRFPDVVAYPEQGYAWVATRHPERPVPEGGDDGIIARFDLPPSQ
Ga0075426_108140561	3300006903	Populus Rhizosphere	TKRFPDVVAYPERGVAWVATRHPERPVAEGGDEGIIARFELPPERSDA*
Ga0075424_1012031782	3300006904	Populus Rhizosphere	DEPVRLLGISTKRFPDVVAYPERGVAWVATRHPERPVDDSGDKGIIARFELPPDQE*
Ga0074063_142333032	3300006953	Soil	DEPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERRVPEGGDPGIIARFEMPGGD*
Ga0079218_131280722	3300007004	Agricultural Soil	SNPTDEPVRMLAISSKRFPDVVAYPERGVAWVATRHPERPVPEGRDDGIIARFDLPPESQ
Ga0099829_101851634	3300009038	Vadose Zone Soil	GISTKRFPDVVAYPERGVAWVATRQPERPVREGGDEGVIARFELASDD*
Ga0099828_114553281	3300009089	Vadose Zone Soil	MLGTSTKRFPDVVAYPERGVAWVATRHPERPVPESGDKGIIARFELPHRE*
Ga0075418_113799571	3300009100	Populus Rhizosphere	ISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDNGIIARFDLPPE*
Ga0111538_104213251	3300009156	Populus Rhizosphere	NPTDEPVRLLGISTKRFPDVVAYPERGVAWVATRHPERPVDDSGDKGIIARFELPPDQE*
Ga0105248_132390792	3300009177	Switchgrass Rhizosphere	LAVSSKRFPDVVAYPEQGYAWVATRHPERPVPEGGDDGIIARFDLPPSQ*
Ga0105249_124223831	3300009553	Switchgrass Rhizosphere	PADEPARILGISSKRFPDVVAYPEQGVAWVATRHPERRVPEGGDEGIIARFDLPPGE*
Ga0126308_106641921	3300010040	Serpentine Soil	EPARLLAISSKRFPDVVAYPERGVAWVATRHPERPVPADGDSGIIARFDLPPSQ*
Ga0126319_10048142	3300010147	Soil	FSNPTDEPVRLLAISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDNGIIARFDLPPESQ*
Ga0126319_11723941	3300010147	Soil	PARLLAVSSKRFPDVVAYPERGVAWVATRHPERPVPEGGDTGIIARFELPPGE*
Ga0134125_116330952	3300010371	Terrestrial Soil	VFSNPTDEPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGIIARFDLPEAE*
Ga0134128_106327811	3300010373	Terrestrial Soil	ARIIAVSSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFDLP*
Ga0134122_117615371	3300010400	Terrestrial Soil	TFSNPTDEPVRMIGVSTKRFPDVVAYPERGVAWVATRHPERPVPEGGDQGVIARFDLAPDE*
Ga0134123_107820012	3300010403	Terrestrial Soil	PARMIGISSKRFPDVVAYPERGVAWVATRHPERAVPDGGDEGIIARFELPGESASN*
Ga0138514_1000772782	3300011003	Soil	MLGISTKRFPDVVAYPERGVAWVATRHPERPVPEDGDEGVIARFELASDD*
Ga0120192_100844712	3300012021	Terrestrial	PFSTPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELAPGD*
Ga0136625_12446031	3300012091	Polar Desert Sand	VRLLGISTKRFPDVVAYPEQRVAWVATRHPERPVPEGGDEGIIARFELPYGD*
Ga0137382_109134012	3300012200	Vadose Zone Soil	LLGISTKRFPDVVAYPEQGVAWVATRHPERPVGDSADKGIIARFELPLEQSDA*
Ga0137365_109110311	3300012201	Vadose Zone Soil	PVRMLGISTKRFPDVVAYPERGIAWVATRHPERGVPEGGDEGIIARFELPPGE*
Ga0137378_109573751	3300012210	Vadose Zone Soil	ISTKRFPDVLAYPERGVAWVATRHPERPVGEGADKGIIARFEMPPEQSDA*
Ga0137371_104284522	3300012356	Vadose Zone Soil	MLGISTKRFPDVVAYPERGVAWVATRHPERPVPESGDEGIIARFELPDSE*
Ga0137375_105800631	3300012360	Vadose Zone Soil	PTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVSEGGDEGVIARFELASDD*
Ga0157351_10504731	3300012501	Unplanted Soil	HAFSNPAAEPARILGISSKRFPDVVAYPEQGVAWVATRHPERPVPEGGDEGIIARFDLPSS*
Ga0157300_10130833	3300012884	Soil	MLGISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFELPRGE*
Ga0157285_102074071	3300012897	Soil	PARMLGISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFELPRGE*
Ga0157295_102507252	3300012906	Soil	SDEPARMLGISSKRFPDVVAYPEQGVAWVATRHPERRVPEGGDEGIIARFDLPRGE*
Ga0157286_103654052	3300012908	Soil	GISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDQGVIARFELAPDE*
Ga0157310_100465923	3300012916	Soil	HTFSNPTSEPARMLGISAKRFPDVVAYPERGVAWVATRHPERPVPEGADEGIIARFELPRAE*
Ga0164299_102972233	3300012958	Soil	GISTKRFPDVVAYPERGVAWVATRHPERPLPEGGDEGVIARFELPPDART*
Ga0164299_104326801	3300012958	Soil	PVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIGRFELAPDD*
Ga0164301_113959541	3300012960	Soil	DEPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGVIARFELPEAE*
Ga0134087_102641371	3300012977	Grasslands Soil	HTFSNPTDEPARMLGISSKRFPDVVAYPEQGVAWVATRHPERRVPEGGDEGIIARFELPRSE*
Ga0164308_122877582	3300012985	Soil	EPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGVIARFELPEVE*
Ga0164304_117995512	3300012986	Soil	RMIGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFEMPPDEPA*
Ga0157371_112736761	3300013102	Corn Rhizosphere	VRILGISTKRFPDVVAYPERGVAWVATRHPERPVAEGGDEGIIARFEFHPDEWHCMID*
Ga0120123_10981471	3300013770	Permafrost	VRMLGISTKRFPDVVAYPERGVAWVATRHPERPIREGGDEGVIARFELASDD*
Ga0075351_11678671	3300014318	Natural And Restored Wetlands	VRMIGISTKRFPDVLAYPERGVAWVATRHPERPLPEGGDEGVIARFGLASDD*
Ga0182008_100874254	3300014497	Rhizosphere	VTETPRKVNETDEPVRLLGISTKRFPDVVAYPEEGIAWVATRHPERPVAEGSDTGIVARFDLPTDN*
Ga0134072_100731693	3300015357	Grasslands Soil	EPARIIAVSSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFDLP*
Ga0132256_1012021653	3300015372	Arabidopsis Rhizosphere	VRILGISTKRFPDVVAYPERGVAWVATRHPERPLPEGGDEGVIARFELPPGV*
Ga0132256_1015585362	3300015372	Arabidopsis Rhizosphere	DEPARMLAVSSKRFPDVLVYPERGVAWAATRHPERPVPEGGDEGVIARFEIPPDDGGT*
Ga0132255_1003951711	3300015374	Arabidopsis Rhizosphere	STKRFPDVVAYPERGVAWVATRHPERPLPEGGDEGVIARFELPPGV*
Ga0163161_111284221	3300017792	Switchgrass Rhizosphere	HTFSNPTDEPVRMLGISTKRFPDVLVYPERGVGWAATRHPERAVPEGGDKGVIARFELARDD
Ga0184605_105428171	3300018027	Groundwater Sediment	NPTDEPVRILAVSAGRFPDVVAYPEHGYAWVATRDPEFPPPEGGDEGIIARFELPTDPPATS
Ga0184620_102406522	3300018051	Groundwater Sediment	DEPVWLLGISTKRFPDVVAYPERRVAWVATRHPERPIPDGGDEGVIARFQLPPDD
Ga0187766_101824941	3300018058	Tropical Peatland	DEPARLIGVSTKRFPDLVAYPERGVAWVATHHPERPLRAGDDPGVIARFELPPEQPAG
Ga0184637_107271592	3300018063	Groundwater Sediment	ISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASDD
Ga0184632_104792012	3300018075	Groundwater Sediment	TDEPARMLAISSKRFPDVLAYPEQGVAWVATRHPERPVPADGDSGIIARFDLPPSQ
Ga0184639_106535851	3300018082	Groundwater Sediment	FSNTTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDQGVIARFELAPGD
Ga0184628_105137412	3300018083	Groundwater Sediment	DEPARLLAVSSKRFPDVVAYPEQGYAWVATRHPERPVPADGDAGIIARFDLPPSQ
Ga0190275_106461681	3300018432	Soil	DFSNPSEAPARLLGISTKRFPDVVAYPERGVAWVATRHPERPLMDGDDKGVIARFELPAE
Ga0190270_114779872	3300018469	Soil	FSNPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDPGIIARFELASDD
Ga0173481_100143455	3300019356	Soil	MLGISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFELPRGE
Ga0210381_102197251	3300021078	Groundwater Sediment	TDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERAVPEGGDEGVIARFELAPGD
Ga0210382_101955443	3300021080	Groundwater Sediment	SNPTDEAVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVREGGDEGVIARFELASDD
Ga0193699_104842701	3300021363	Soil	NPTDEPVRMIAVSTKRFPDVVAYPERGIAWVATRHPERPVAEDGDEGIIARFDLPEGRLQ
Ga0222622_102736572	3300022756	Groundwater Sediment	SNPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASDD
Ga0210114_10765902	3300025795	Natural And Restored Wetlands	SNPTDEPVRMLGISTKRFPDVVAYPEPGVAWVATRHPERPVPAGGDEGIIARFEVPPPE
Ga0207649_104227921	3300025920	Corn Rhizosphere	TFSNPGDEPARIIAVSTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGIIARFEMPKD
Ga0207694_107378052	3300025924	Corn Rhizosphere	GVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGVIARFELPGAE
Ga0207700_103294431	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	FGNATEEPVRMLGISSKRFPDVVAYPERGVAWVATRHPERPLKEGGDEGIIARFELPPER
Ga0207686_105394893	3300025934	Miscanthus Rhizosphere	TFSNPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPIPEGGDEGVIARFELAAD
Ga0207668_104474841	3300025972	Switchgrass Rhizosphere	GISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDRGVIARFELPPDE
Ga0207641_108627381	3300026088	Switchgrass Rhizosphere	DDPVRILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGIIARFELPGAE
Ga0209590_107667041	3300027882	Vadose Zone Soil	LAVSTKRFPDVVAYPEQGIAWVATRHPERPVPEGGDKGIIGRFELPRQE
Ga0307291_11823602	3300028707	Soil	TDEPVRMLGVSTKRLPDVVAYPEQGYAWVATRHPERPIAEGDDPGIIARFELPGEA
Ga0307279_100499531	3300028709	Soil	PVRILGVSTKRVPDVVAYPEQVYAWVATRHPERPVPEGGDPGIIARFEMPGGE
Ga0307322_100766372	3300028710	Soil	HAFSNPTDEPARILGISSKRFPDVVAYPEQRVAWVATRHPERRVSEGGDEGIIARFDLPPGE
Ga0307293_100940071	3300028711	Soil	LGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASDD
Ga0307317_102611372	3300028720	Soil	EHLRMIGISTKRFPDVVAYPERGVAWVATRHPERPLPEGGDEGVIARFELTPDD
Ga0307318_102328312	3300028744	Soil	PACILGISSKRFPDVVAYPEQGVAWVATRHPERRVPEGGDEGIIARFDLPPRE
Ga0307316_101877182	3300028755	Soil	MLGISTKRFPDVVAYPERGVAWVATRHPERPVREGGDEGVIARFELASDD
Ga0307299_102058762	3300028793	Soil	NNTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERAVPEGGDEGVIARFELAPGD
Ga0307284_103802442	3300028799	Soil	TFSNPTDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASD
Ga0307286_104030251	3300028876	Soil	TFSNATDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDQGVIARFGLTAG
Ga0307308_100297691	3300028884	Soil	RILGVSTKRVPDVVAYPEQGYAWVATRHPERPVPEGGDPGIIARFEMPGGE
Ga0307304_101971172	3300028885	Soil	TDEPVRMLGISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDEGVIARFELASDD
Ga0307497_104087991	3300031226	Soil	FSNPTDKPARLLAISSKRFPDVVAYPERGVAWVATRHPERPVPEGGDTGIIARFELPPGE
Ga0308194_101037271	3300031421	Soil	VRMLGVSTKRLPDVVAYPEQGYAWVATRHPERPIAEGDDPGIIARFELPGEA
Ga0318534_100803783	3300031544	Soil	VSTKWFPDVLAYPERGVAWAATRHPERPVPEGGDEGIIARFDLPRGE
Ga0265313_101973691	3300031595	Rhizosphere	SNPTDEPARILGISTKRFPDLLVYPEQGVAWVATHHPERGLPEGGDEGIIARFELPPGYVGAVTAP
Ga0318554_101154891	3300031765	Soil	GVSTKRFPDVLAYPERGVAWAATRHPERPVPEGGDEGIIARFDLPRGE
Ga0308176_126855532	3300031996	Soil	NPADEPARLVGISTKRFPDVVAYPERRVAWVATRHPERPVREGADKGIIARFELPPEESD
Ga0310906_113810852	3300032013	Soil	RMLGVSTKRFPDVVAYPERGVAWVATRHPERPLPEGGDQGVIARFELAPDD
Ga0318510_105543011	3300032064	Soil	MLGISTKRFPDVLAYPERGVAWVATRHPERGVPEDGDEGIIARFELPPGVAGG
Ga0318513_103904371	3300032065	Soil	PVRMLGVSTKRFPDVLAYPERGVAWAATRHPERPVPEGGDEGIIARFDLPRGE
Ga0315286_103716812	3300032342	Sediment	ISTKRFPDVVAYPERGVAWVATRHPERPVPEGGDQGVIARFELASDD
Ga0326726_120280541	3300033433	Peat Soil	STKRFPDVVAYPERGVAWVATRHPERPVGEGVDKGIIARFELPPEESDT
Ga0316630_112455002	3300033487	Soil	VRMLGISTKRFPDVVAYPERAVAWVATRNPERAVPEGGDRGIIARFELTSDD
Ga0373959_0112865_480_632	3300034820	Rhizosphere Soil	MLGISAKRFPDVVAYPERGVAWVATRHPERPVPEGADEGIIARFELPRGE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065156

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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