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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F065126 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 128 |
| Average Sequence Length | 50 residues |
| Representative Sequence | QGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHKKMTADESYEPVSYN |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 128 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 10.94 % |
| % of genes from short scaffolds (< 2000 bps) | 9.38 % |
| Associated GOLD sequencing projects | 83 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.55 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (98.438 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (28.125 % of family members) |
| Environment Ontology (ENVO) | Unclassified (72.656 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (88.281 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.68% β-sheet: 0.00% Coil/Unstructured: 51.32% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.55 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 128 Family Scaffolds |
|---|---|---|
| PF08291 | Peptidase_M15_3 | 8.59 |
| PF13884 | Peptidase_S74 | 1.56 |
| PF11753 | DUF3310 | 0.78 |
| PF00126 | HTH_1 | 0.78 |
| PF11351 | GTA_holin_3TM | 0.78 |
| PF09643 | YopX | 0.78 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 98.44 % |
| All Organisms | root | All Organisms | 1.56 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300000115|DelMOSum2011_c10062244 | Not Available | 1396 | Open in IMG/M |
| 3300000116|DelMOSpr2010_c10122286 | Not Available | 937 | Open in IMG/M |
| 3300006793|Ga0098055_1180695 | Not Available | 805 | Open in IMG/M |
| 3300006870|Ga0075479_10390796 | Not Available | 538 | Open in IMG/M |
| 3300007540|Ga0099847_1098341 | Not Available | 892 | Open in IMG/M |
| 3300009086|Ga0102812_10054296 | All Organisms → Viruses → Predicted Viral | 2227 | Open in IMG/M |
| 3300009436|Ga0115008_10392340 | Not Available | 985 | Open in IMG/M |
| 3300009436|Ga0115008_10579189 | Not Available | 807 | Open in IMG/M |
| 3300009436|Ga0115008_11255300 | Not Available | 564 | Open in IMG/M |
| 3300017697|Ga0180120_10264358 | Not Available | 695 | Open in IMG/M |
| 3300017749|Ga0181392_1043054 | All Organisms → Viruses → Predicted Viral | 1397 | Open in IMG/M |
| 3300020187|Ga0206130_10007273 | Not Available | 12322 | Open in IMG/M |
| 3300022178|Ga0196887_1040201 | Not Available | 1247 | Open in IMG/M |
| 3300028599|Ga0265309_10286789 | Not Available | 1054 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 28.12% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 11.72% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 10.94% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 10.94% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 7.81% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 3.91% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 3.91% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 2.34% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 2.34% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 2.34% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.56% |
| Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 1.56% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.56% |
| Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 1.56% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 0.78% |
| Microbial Mat | Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat | 0.78% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 0.78% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 0.78% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 0.78% |
| Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 0.78% |
| Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 0.78% |
| Deep Subsurface | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface | 0.78% |
| Sediment | Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment | 0.78% |
| Saline Lake | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake | 0.78% |
| Saline Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water | 0.78% |
| Marine Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment | 0.78% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000115 | Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011 | Environmental | Open in IMG/M |
| 3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
| 3300000928 | Marine plume microbial communities from the Columbia River - 25 PSU | Environmental | Open in IMG/M |
| 3300002514 | Marine viral communities from the Pacific Ocean - ETNP_6_85 | Environmental | Open in IMG/M |
| 3300006029 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006164 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA | Environmental | Open in IMG/M |
| 3300006352 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA | Environmental | Open in IMG/M |
| 3300006793 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG | Environmental | Open in IMG/M |
| 3300006803 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
| 3300006870 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006920 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 | Environmental | Open in IMG/M |
| 3300006922 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG | Environmental | Open in IMG/M |
| 3300006925 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG | Environmental | Open in IMG/M |
| 3300007229 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA | Environmental | Open in IMG/M |
| 3300007231 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA | Environmental | Open in IMG/M |
| 3300007276 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 | Environmental | Open in IMG/M |
| 3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007546 | Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02 | Environmental | Open in IMG/M |
| 3300007665 | Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3 | Environmental | Open in IMG/M |
| 3300007706 | Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 | Environmental | Open in IMG/M |
| 3300007962 | Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02 | Environmental | Open in IMG/M |
| 3300008999 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 | Environmental | Open in IMG/M |
| 3300009003 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 | Environmental | Open in IMG/M |
| 3300009024 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 | Environmental | Open in IMG/M |
| 3300009086 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 | Environmental | Open in IMG/M |
| 3300009135 | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsf | Environmental | Open in IMG/M |
| 3300009434 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 | Environmental | Open in IMG/M |
| 3300009436 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome | Environmental | Open in IMG/M |
| 3300009441 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome | Environmental | Open in IMG/M |
| 3300009467 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 | Environmental | Open in IMG/M |
| 3300009505 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 | Environmental | Open in IMG/M |
| 3300010150 | Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG | Environmental | Open in IMG/M |
| 3300010155 | Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG | Environmental | Open in IMG/M |
| 3300010316 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300010368 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA | Environmental | Open in IMG/M |
| 3300011013 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG | Environmental | Open in IMG/M |
| 3300012522 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300013010 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017725 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29 | Environmental | Open in IMG/M |
| 3300017741 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19 | Environmental | Open in IMG/M |
| 3300017746 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29 | Environmental | Open in IMG/M |
| 3300017749 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 | Environmental | Open in IMG/M |
| 3300017751 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2) | Environmental | Open in IMG/M |
| 3300017762 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18 | Environmental | Open in IMG/M |
| 3300017770 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2) | Environmental | Open in IMG/M |
| 3300017781 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14 | Environmental | Open in IMG/M |
| 3300017782 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19 | Environmental | Open in IMG/M |
| 3300019122 | Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1 | Environmental | Open in IMG/M |
| 3300020169 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1 | Environmental | Open in IMG/M |
| 3300020182 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2 | Environmental | Open in IMG/M |
| 3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
| 3300020187 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1 | Environmental | Open in IMG/M |
| 3300020406 | Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024) | Environmental | Open in IMG/M |
| 3300021085 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 | Environmental | Open in IMG/M |
| 3300021378 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131 | Environmental | Open in IMG/M |
| 3300021960 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D | Environmental | Open in IMG/M |
| 3300022063 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2) | Environmental | Open in IMG/M |
| 3300022072 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3) | Environmental | Open in IMG/M |
| 3300022074 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2) | Environmental | Open in IMG/M |
| 3300022164 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2) | Environmental | Open in IMG/M |
| 3300022178 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3) | Environmental | Open in IMG/M |
| 3300022217 | Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24 | Environmental | Open in IMG/M |
| 3300022920 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG | Environmental | Open in IMG/M |
| 3300023229 | Saline water microbial communities from Ace Lake, Antarctica - #551 | Environmental | Open in IMG/M |
| 3300024062 (restricted) | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1 | Environmental | Open in IMG/M |
| 3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
| 3300024520 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1 | Environmental | Open in IMG/M |
| 3300025085 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025108 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025138 | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025502 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes) | Environmental | Open in IMG/M |
| 3300025508 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025543 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025570 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025594 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes) | Environmental | Open in IMG/M |
| 3300025620 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes) | Environmental | Open in IMG/M |
| 3300025645 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes) | Environmental | Open in IMG/M |
| 3300025652 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes) | Environmental | Open in IMG/M |
| 3300025658 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025751 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025806 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027159 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes) | Environmental | Open in IMG/M |
| 3300027186 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes) | Environmental | Open in IMG/M |
| 3300027235 | Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027239 | Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027251 | Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02 (SPAdes) | Environmental | Open in IMG/M |
| 3300027253 | Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes) | Environmental | Open in IMG/M |
| 3300027366 | Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027571 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes) | Environmental | Open in IMG/M |
| 3300028599 | Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300031167 | Marine microbial communities from water near the shore, Antarctic Ocean - #418 | Environmental | Open in IMG/M |
| 3300031519 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 | Environmental | Open in IMG/M |
| 3300031687 | Marine microbial communities from water near the shore, Antarctic Ocean - #125 | Environmental | Open in IMG/M |
| 3300031766 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515 | Environmental | Open in IMG/M |
| 3300031851 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515 | Environmental | Open in IMG/M |
| 3300032373 | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| DelMOSum2011_100622441 | 3300000115 | Marine | LMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| DelMOSpr2010_100717277 | 3300000116 | Marine | LLGKGHMDMLREKWQTLMPTNKKLRAEIAKHYREEFRKMEDDETHKPISYN* |
| DelMOSpr2010_101222864 | 3300000116 | Marine | MLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN* |
| OpTDRAFT_101342421 | 3300000928 | Freshwater And Marine | NPLDFTIFLQKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| JGI25133J35611_101053581 | 3300002514 | Marine | LEKKNVLMPTTKQLRKEISKHYRDEFRKMEADPSYEPISYN* |
| Ga0075466_10242396 | 3300006029 | Aqueous | MPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| Ga0075466_11223503 | 3300006029 | Aqueous | MELLREKWNVLMPTTKLLRAEIAKHYREEFKKMDDHSEYQPISYN* |
| Ga0075441_101095171 | 3300006164 | Marine | MELLREKWNVLMPTTKLLRAEIAKHYREEFKKMDYHSEYQPISYN* |
| Ga0075448_102260991 | 3300006352 | Marine | HLDILREKWQILMPTNKKLRAEIAKHYRSEHKQMMANEHHSPTSWN* |
| Ga0098055_11806953 | 3300006793 | Marine | EKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEEYQPTSYN* |
| Ga0075467_103313131 | 3300006803 | Aqueous | DFTAWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYDPVSYN* |
| Ga0075467_104311503 | 3300006803 | Aqueous | MDYYGPAKLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN* |
| Ga0070754_102209453 | 3300006810 | Aqueous | DWCLELLGEGHMELLREKWNVLMPTTKLLRAEIAKHYREEFKKMDDHSEYQPISYN* |
| Ga0075479_103907962 | 3300006870 | Aqueous | LGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN* |
| Ga0070748_11511073 | 3300006920 | Aqueous | AWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYDPVSYN* |
| Ga0070748_12185071 | 3300006920 | Aqueous | VLDTHGVGHLEMLREKWNVLMPTNKKLRAEIAKHYREEFKKMKEDETYEPVSYN* |
| Ga0070748_12429343 | 3300006920 | Aqueous | LDFTHWLMDYYGPAKLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN |
| Ga0098045_10906591 | 3300006922 | Marine | GHMEMLNEKWRVILKTNKLLRKEIAKHYREEHKKMVDDVGYEPVSYN* |
| Ga0098050_10853661 | 3300006925 | Marine | REKWQVLMKTNKQLRKEIAKHYREEFKKMDEDENYEPVSYN* |
| Ga0075468_101602142 | 3300007229 | Aqueous | FTAWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| Ga0075468_102089902 | 3300007229 | Aqueous | VWLESHLGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEDHQPTSYN* |
| Ga0075469_101547851 | 3300007231 | Aqueous | MEYHGPARLEILREKWNVLMPTTKKLRAEIARHYREEHKKMTADETYEPVSYN* |
| Ga0070747_12657211 | 3300007276 | Aqueous | WLMDYYGPAKLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN* |
| Ga0070747_13467232 | 3300007276 | Aqueous | LMPTNKKLRAEIAKHYREEHGKMLQDEDHQPTSYN* |
| Ga0099851_11920562 | 3300007538 | Aqueous | LREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| Ga0099847_10983414 | 3300007540 | Aqueous | TAWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| Ga0099847_11674862 | 3300007540 | Aqueous | YYGPAKLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN* |
| Ga0102874_10592231 | 3300007546 | Estuarine | HLDILREKWQVLMPTTKKLRAEIASHYKEEHKKMLADDTYEPVSYN* |
| Ga0102908_10840003 | 3300007665 | Estuarine | VLMKTNKLLRAEIAKHYREEHKKMLASSSYQPISYN* |
| Ga0102899_11374093 | 3300007706 | Estuarine | AVCLCHYCHRTFTANPLDFTIFLQKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYKEEHKKMLADDTYEPVSYN* |
| Ga0102907_10509791 | 3300007962 | Estuarine | QYKGEAHLAILREKWLVLMKTNKILRAEIANHYREEHKKMLASSSYQPISYN* |
| Ga0102816_10031611 | 3300008999 | Estuarine | TANPFEFTAWVLDTHGVGHLEMLREKWNVLMPTNKKLRAEIAKHYREEFKKMKEDETYEPVSYN* |
| Ga0102813_11790701 | 3300009003 | Estuarine | TAWLESLLGKGHMDMLREKWQTLMPTNKKLRAEIAKHYREEFRKMEDDETHKPISYN* |
| Ga0102811_14108231 | 3300009024 | Estuarine | QTLMPTNKKLRAEIAKHYREEFRKMEDDETHEPISYN* |
| Ga0102812_100542968 | 3300009086 | Estuarine | REKWQILMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| Ga0118736_100111637 | 3300009135 | Marine Sediment | VLMPTTKLLRAEIAKHYREEFKKMDYHSEYQPISYN* |
| Ga0115562_12980071 | 3300009434 | Pelagic Marine | RLEILREKWNVLMPTTKKLRAEIARHYREDHKKMTADETYEPVSYN* |
| Ga0115008_103923401 | 3300009436 | Marine | TAWLEQYKGEAHLAILREKWLVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| Ga0115008_105791894 | 3300009436 | Marine | KGEAHLAILREKWLVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| Ga0115008_105897732 | 3300009436 | Marine | SRWCMEHLGPGHMEMLREKWNVKMPTNKLLRAEIAKHYREEHKKMLASSSYQPISYN* |
| Ga0115008_112553001 | 3300009436 | Marine | KWLVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN* |
| Ga0115007_112722731 | 3300009441 | Marine | PIAFNDWCLELLGEGHMELLREKWNVLMPTTKLLRAEIAKHYREEFKKMDADANYTPISYN* |
| Ga0115565_103609781 | 3300009467 | Pelagic Marine | PARLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTANETYEPVSYN* |
| Ga0115564_101362554 | 3300009505 | Pelagic Marine | HGPARLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN* |
| Ga0098056_10175051 | 3300010150 | Marine | VWLESHLGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEEYQPTSYN* |
| Ga0098047_103518222 | 3300010155 | Marine | YLGKGHMEMLLEKKNVLLPTNKKLRAEIAKHYRLELRQMAQDPSYEPVSYN* |
| Ga0136655_11437671 | 3300010316 | Freshwater To Marine Saline Gradient | HLDILREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| Ga0136655_11710232 | 3300010316 | Freshwater To Marine Saline Gradient | FSRWCMEHLGPGHMELLREKWNIKMPTNKMLRAEIAKHYREEHKKMLASSSYKPISYN* |
| Ga0129324_102557321 | 3300010368 | Freshwater To Marine Saline Gradient | LDILREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| Ga0129324_102765281 | 3300010368 | Freshwater To Marine Saline Gradient | YKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASKSYEPVSYN* |
| Ga0129324_102940292 | 3300010368 | Freshwater To Marine Saline Gradient | FLQKHKGQGHLDILREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| Ga0114934_103317713 | 3300011013 | Deep Subsurface | MDMLREKWQVLMKTNKKLRLEIAKHYREELKKMDEDENYEPISYN* |
| Ga0129326_11497992 | 3300012522 | Aqueous | MEYHGPAKLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN* |
| Ga0129326_14660293 | 3300012522 | Aqueous | WNVLMPTTKKLRAEIAKHYREEHKKMTANETYEPVSYN* |
| Ga0129327_102839721 | 3300013010 | Freshwater To Marine Saline Gradient | QKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN* |
| Ga0129327_106466393 | 3300013010 | Freshwater To Marine Saline Gradient | QYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYDPVSYN* |
| Ga0180120_102574201 | 3300017697 | Freshwater To Marine Saline Gradient | PLDFTAWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYDPVSY |
| Ga0180120_102643583 | 3300017697 | Freshwater To Marine Saline Gradient | LMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0180120_103215531 | 3300017697 | Freshwater To Marine Saline Gradient | VLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN |
| Ga0181398_10238431 | 3300017725 | Seawater | TAWVLDTHGVGHLEMLREKWNVLMPTNKKLRAEIAKHYREEFKKMKADETYEPVSYN |
| Ga0181421_11626951 | 3300017741 | Seawater | TAFCMDKHGAGHMEMLREKWNVLMHTNKKLRAEIAKHYRQEHAKMLQDENYEPISYN |
| Ga0181389_10828411 | 3300017746 | Seawater | AFTNFLQVYLGKGHMEMLNEKWRVILKTNKLLRKEIAKHYREEHKKMVDDVGYEPVSYN |
| Ga0181392_10430541 | 3300017749 | Seawater | VLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0187219_11478331 | 3300017751 | Seawater | NPLDFTAWLEQYKGEAHLAILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0181422_10412271 | 3300017762 | Seawater | DTFGAGHMEMLREKWNVLMPTNKKLRAEIAKHYREEHKKMDADEKYEPISYN |
| Ga0187217_11129351 | 3300017770 | Seawater | WLESLLGKGHMDMLREKWQTLMPTNKKLRAEIAKHYREEFRKMEDDETHEPISYN |
| Ga0187217_11896591 | 3300017770 | Seawater | WLESLLGKGHMDMLREKWQTLMPTNKKLRAEIAKHYREEFRKMEDDEKHEPISYN |
| Ga0181423_12383773 | 3300017781 | Seawater | ESKLGKGHMDMLREKWQVLMPTNKKLRSEISKHYREELKKMDADEKYDPISYN |
| Ga0181380_12020211 | 3300017782 | Seawater | CLMPTTKKLRAEIAKHYREEFKKMEADPSYTPVSYN |
| Ga0181380_12921032 | 3300017782 | Seawater | CLMPTTKKLRAEIAKHYREEFKKMEADPSYTPVSFN |
| Ga0188839_10230642 | 3300019122 | Freshwater Lake | LTFTANPLDFTIFLQKYKGQGHLDILREKWQVLMPTNKKLRAEIASHYREEHKKMLADDTYEPVSYN |
| Ga0206127_10908996 | 3300020169 | Seawater | LGRGHMEMLLEKKNILMPTNKKLRAEIAKHYRLELRKMEKDPSYEPVSYN |
| Ga0206129_102407523 | 3300020182 | Seawater | FSVWLESHLGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHVKMLQDEDYQPTSYN |
| Ga0206129_103067253 | 3300020182 | Seawater | SVWLESHLGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEEYQPTSYN |
| Ga0206131_102931302 | 3300020185 | Seawater | DMLREKWQVLMPTNKKLRVEIAKHYREEHKKMTADESYEPVSYN |
| Ga0206130_1000727320 | 3300020187 | Seawater | DFSVWLESHLGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN |
| Ga0211668_101867421 | 3300020406 | Marine | WLETYLGKGHLEILREKWNVKMQTNKALRSEISKHYREEFKKMERDELYQPISYN |
| Ga0206677_101242761 | 3300021085 | Seawater | DMLREKWQTLMPTNKKLRAEIAKHYREEFRKMEDDETHKPISYN |
| Ga0213861_105902421 | 3300021378 | Seawater | TFTANPLSFTAWLVEYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0222715_106344341 | 3300021960 | Estuarine Water | QVLMKTNKQLRKEIAKHYREEFKKMDEDENYEPVSYN |
| Ga0212029_10581832 | 3300022063 | Aqueous | VLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN |
| Ga0196889_10451214 | 3300022072 | Aqueous | TAWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0196889_10754131 | 3300022072 | Aqueous | EKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0224906_10198458 | 3300022074 | Seawater | KWQVLMKTNKELRKEIAKHYREEFKKMDEDEKYEPISYN |
| Ga0212022_10099475 | 3300022164 | Aqueous | SQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0212022_10123781 | 3300022164 | Aqueous | QVLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN |
| Ga0212022_10308001 | 3300022164 | Aqueous | QVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0196887_10402015 | 3300022178 | Aqueous | WQVLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN |
| Ga0196887_10551623 | 3300022178 | Aqueous | EQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0196887_11377383 | 3300022178 | Aqueous | EQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLSSESYEPVSYN |
| Ga0224514_103004351 | 3300022217 | Sediment | LGPGHMEMLREKWNVKMPTNKMLRAEIAKHYREEHKKMLASSSYQPISYN |
| (restricted) Ga0233426_100776474 | 3300022920 | Seawater | MEMLKEKKNCLMPTTKKLRAEIAKYYRKEFKKMEADPSYTPVSYN |
| Ga0222661_10508742 | 3300023229 | Saline Water | WQVLMKTNKMLRAEIAKHYREEHKKMLASESYEPVSYN |
| (restricted) Ga0255039_102234721 | 3300024062 | Seawater | QGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHKKMTADESYEPVSYN |
| (restricted) Ga0255039_103927062 | 3300024062 | Seawater | HLGQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEEYQPTSYN |
| Ga0244775_109423853 | 3300024346 | Estuarine | VGHLEMLREKWNVLMPTNKKLRAEIAKHYREEFKKMKEDETYEPVSYN |
| (restricted) Ga0255047_100847491 | 3300024520 | Seawater | LCQGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHGKMLQDEEYQPTSYN |
| Ga0208792_10676801 | 3300025085 | Marine | WQVLMPTNKKLRAEIAKHYREEHAKMLQDEEYQPTSYN |
| Ga0208793_11538452 | 3300025108 | Marine | QGHLDMLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEEYQPTSYN |
| Ga0209634_10564925 | 3300025138 | Marine | KGHMEMLLEKKNILMPTTKQLRKEIAKHYREQYKLMMADQSYEPISYN |
| Ga0208903_11239271 | 3300025502 | Saline Lake | KGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0208148_10541264 | 3300025508 | Aqueous | GHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0208303_10594961 | 3300025543 | Aqueous | WLMEYHGPAKLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN |
| Ga0208303_10963631 | 3300025543 | Aqueous | AWLEQYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0208660_10756931 | 3300025570 | Aqueous | KWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0209094_10800733 | 3300025594 | Pelagic Marine | ANPLDFTIFLQKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYREEHKKMLADDTYEPVSYN |
| Ga0209405_11661601 | 3300025620 | Pelagic Marine | RLEILREKWNVLMPTTKKLRAEIAKHYREEHKKMTADETYEPVSYN |
| Ga0208643_10684694 | 3300025645 | Aqueous | QYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYDPVSYN |
| Ga0208134_11023931 | 3300025652 | Aqueous | QYKGQGHLDILREKWQVLMKTNKLLRAEIAKHYREEHKKMLASESYEPVSYN |
| Ga0209659_11066742 | 3300025658 | Marine | HLDMLREKWQVLMPTNKKLRAEIAKHYREEHKKMTADESYEPVSYN |
| Ga0208150_10568971 | 3300025751 | Aqueous | REKWQVLMKTNKELRKEIAKHYREEFKKMDKDEKYEPISYN |
| Ga0208545_11143403 | 3300025806 | Aqueous | EKWQVLMKTNKLLRAEIAKHYREEHKKMLASDSYEPVSYN |
| Ga0208020_100014815 | 3300027159 | Estuarine | FTAWVLDTHGVGHLEMLREKWNVLMPTNKKLRAEIAKHYREEFKKMKADETYEPVSYN |
| Ga0208797_10037211 | 3300027186 | Estuarine | FTAWVLDTHGVGHLEMLREKWNVLMPTNKKLRAEIAKHYREEFKKMKEDETYEPVSYN |
| Ga0208804_10034831 | 3300027235 | Estuarine | VCLCHYCHRTFTANPLDFTIFLQKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYKEEHKKMLADDTYEPVSYN |
| Ga0208807_10479931 | 3300027239 | Estuarine | HYCHRTFTANPLDFTIFLQKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYKEEHKKMLADDTYEPVSYN |
| Ga0208809_10811283 | 3300027251 | Estuarine | QYKGEAHLAILREKWLVLMKTNKILRAEIANHYREEHKKMLASSSYQPISYN |
| Ga0208680_10470671 | 3300027253 | Estuarine | LAFSAWLEQYKGEAHLAILREKWLVLMKTNKILRAEIANHYREEHKKMLASSSYQPISYN |
| Ga0208556_10553571 | 3300027366 | Estuarine | TFTANPLDFTIFLQKYKGQGHLDILREKWQVLMPTTKKLRAEIASHYKEEHKKMLADDTYEPVSYN |
| Ga0208897_10502846 | 3300027571 | Estuarine | GKGHMDMLREKWQTLMPTNKKLRAEIAKHYREEFRKMEDDETHEPISYN |
| Ga0265309_102867891 | 3300028599 | Sediment | MLREKWQVLMPTNKKLRAEIAKHYREEHAKMLQDEDYQPTSYN |
| Ga0308023_10934732 | 3300031167 | Marine | DFSVWLQTHVGQGHLDLLREKWQVLMPTNKQLRAEIAKHYREEHKKMLADDTYIPGSYN |
| Ga0307488_104149663 | 3300031519 | Sackhole Brine | KRLGEGHMEILRAKWNVLMPTNKLLRAEIAKHYREEFKKMDVDANYTPISYN |
| Ga0307488_104644923 | 3300031519 | Sackhole Brine | LMKTNKLLRAEIAKHYREEHKKMTASESYEPVSYN |
| Ga0308008_10581224 | 3300031687 | Marine | EKWNVLMPTTKLLRAEIAKHYREEFKKMDYHSEYQPISYN |
| Ga0315322_106440373 | 3300031766 | Seawater | PFEFTAFCMDKFGAGHMEMLREKWNVMMPTTKKLRAEIAKHYREEFKKLDEDENYEPISY |
| Ga0315320_100061821 | 3300031851 | Seawater | FCIDKFGAGHMEMLREKWNVLMPTTKKLRAEIAKHYREEFKKLDEDENYEPISYN |
| Ga0316204_106383081 | 3300032373 | Microbial Mat | VLMPTNKKLRSEISKHYREELKKMDADEKYDPISYN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |