Metagenome / Metatranscriptome Family F065091

Overview

Basic Information

• Family ID: F065091
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 128
• Average Sequence Length: 48 residues
• Representative Sequence: VILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK
• Number of Associated Samples: 104
• Number of Associated Scaffolds: 128

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 10.94 %
• % of genes near scaffold ends (potentially truncated): 78.12 %
• % of genes from short scaffolds (< 2000 bps): 84.38 %
• Associated GOLD sequencing projects: 99
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (99.219 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.656 % of family members)
• Environment Ontology (ENVO): Unclassified (35.938 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.219 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 41.67%
  Coil/Unstructured: 58.33%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF02274	ADI	7.03
PF00535	Glycos_transf_2	3.91
PF16326	ABC_tran_CTD	3.12
PF03412	Peptidase_C39	2.34
PF01148	CTP_transf_1	2.34
PF13662	Toprim_4	1.56
PF08734	GYD	1.56
PF04366	Ysc84	1.56
PF00144	Beta-lactamase	0.78
PF02785	Biotin_carb_C	0.78
PF16266	DUF4919	0.78
PF13533	Biotin_lipoyl_2	0.78
PF00199	Catalase	0.78
PF13884	Peptidase_S74	0.78
PF00027	cNMP_binding	0.78
PF00248	Aldo_ket_red	0.78
PF00072	Response_reg	0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	7.03
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	7.03
COG4874	Uncharacterized conserved protein	Function unknown [S]	7.03
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	1.56
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.56
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.78
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.78
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.78

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.22 %
Unclassified	root	N/A	0.78 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.22 %
Unclassified	root	N/A	0.78 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.22 %
Unclassified	root	N/A	0.78 %

Level 4

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	46.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 5

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	46.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 6

Name	Rank	Taxonomy	Distribution
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	16.41 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	13.28 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 7

Name	Rank	Taxonomy	Distribution
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	15.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.28 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 8

Name	Rank	Taxonomy	Distribution
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	15.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.28 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 9

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.28 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	6.25 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	3.91 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 10

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.28 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	6.25 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3.91 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Level 11

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.28 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	6.25 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3.91 %
Verrucomicrobium sp. BvORR106	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR106	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Unclassified	root	N/A	0.78 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000754|JGI11851J11668_1000621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1344
3300002903|JGI24801J43971_1010113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517
3300002916|JGI25389J43894_1036343	All Organisms → cellular organisms → Bacteria	850
3300004157|Ga0062590_100699106	All Organisms → cellular organisms → Bacteria	913
3300005166|Ga0066674_10236677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	868
3300005176|Ga0066679_10744040	All Organisms → cellular organisms → Bacteria	631
3300005180|Ga0066685_10242020	All Organisms → cellular organisms → Bacteria	1243
3300005180|Ga0066685_10342999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1036
3300005186|Ga0066676_10685216	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	697
3300005187|Ga0066675_10058775	All Organisms → cellular organisms → Bacteria	2400
3300005187|Ga0066675_10575817	All Organisms → cellular organisms → Bacteria	845
3300005289|Ga0065704_10820069	All Organisms → cellular organisms → Bacteria	518
3300005332|Ga0066388_103691113	All Organisms → cellular organisms → Bacteria	781
3300005354|Ga0070675_101570415	All Organisms → cellular organisms → Bacteria	607
3300005434|Ga0070709_10134895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1689
3300005451|Ga0066681_10126875	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1482
3300005457|Ga0070662_101580686	All Organisms → cellular organisms → Bacteria	566
3300005558|Ga0066698_10633821	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715
3300005558|Ga0066698_11054180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515
3300005576|Ga0066708_10217186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1205
3300005577|Ga0068857_102114582	All Organisms → cellular organisms → Bacteria	552
3300005764|Ga0066903_101571857	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1246
3300005764|Ga0066903_103122671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	896
3300005764|Ga0066903_103130273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	895
3300005764|Ga0066903_103348854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	865
3300006034|Ga0066656_10743828	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	629
3300006169|Ga0082029_1331401	All Organisms → cellular organisms → Bacteria	2072
3300006175|Ga0070712_101717022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR106	549
3300006796|Ga0066665_10245614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1414
3300006844|Ga0075428_101918172	All Organisms → cellular organisms → Bacteria	615
3300009137|Ga0066709_103155643	All Organisms → cellular organisms → Bacteria	602
3300009156|Ga0111538_10042095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5880
3300009162|Ga0075423_11253052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	792
3300010043|Ga0126380_11097148	All Organisms → cellular organisms → Bacteria	678
3300010043|Ga0126380_11612701	All Organisms → cellular organisms → Bacteria	579
3300010046|Ga0126384_10008379	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	6367
3300010047|Ga0126382_10045333	All Organisms → cellular organisms → Bacteria	2536
3300010047|Ga0126382_10720384	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	839
3300010303|Ga0134082_10262375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	718
3300010304|Ga0134088_10726078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500
3300010323|Ga0134086_10035206	All Organisms → cellular organisms → Bacteria	1662
3300010358|Ga0126370_12165809	All Organisms → cellular organisms → Bacteria	547
3300010366|Ga0126379_11126464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	891
3300010366|Ga0126379_11999755	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682
3300010366|Ga0126379_12606680	All Organisms → cellular organisms → Bacteria	603
3300010398|Ga0126383_10884361	All Organisms → cellular organisms → Bacteria	979
3300010398|Ga0126383_11495664	All Organisms → cellular organisms → Bacteria	765
3300010398|Ga0126383_11643350	All Organisms → cellular organisms → Bacteria	732
3300011271|Ga0137393_10683046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	880
3300011444|Ga0137463_1308247	All Organisms → cellular organisms → Bacteria	578
3300012198|Ga0137364_10335871	All Organisms → cellular organisms → Bacteria	1126
3300012198|Ga0137364_10376901	All Organisms → cellular organisms → Bacteria	1060
3300012199|Ga0137383_10300980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1174
3300012200|Ga0137382_10610753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	779
3300012202|Ga0137363_10497102	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1024
3300012205|Ga0137362_10355379	All Organisms → cellular organisms → Bacteria	1269
3300012206|Ga0137380_10404196	All Organisms → cellular organisms → Bacteria	1212
3300012207|Ga0137381_11613892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	539
3300012207|Ga0137381_11786396	All Organisms → cellular organisms → Bacteria	504
3300012209|Ga0137379_10797305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	849
3300012210|Ga0137378_10034677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4489
3300012210|Ga0137378_10601930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1009
3300012285|Ga0137370_10078432	All Organisms → cellular organisms → Bacteria	1826
3300012285|Ga0137370_10767448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	598
3300012350|Ga0137372_11020424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575
3300012351|Ga0137386_10608982	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	786
3300012355|Ga0137369_10259062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1311
3300012355|Ga0137369_11123268	All Organisms → cellular organisms → Bacteria	512
3300012356|Ga0137371_11171474	All Organisms → cellular organisms → Bacteria	575
3300012357|Ga0137384_10691048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	829
3300012925|Ga0137419_10352259	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1139
3300012929|Ga0137404_10013933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5656
3300012929|Ga0137404_10294541	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1406
3300012930|Ga0137407_11194730	All Organisms → cellular organisms → Bacteria	722
3300012948|Ga0126375_10717956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	780
3300012957|Ga0164303_11108488	All Organisms → cellular organisms → Bacteria	572
3300012971|Ga0126369_13039197	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	549
3300012972|Ga0134077_10290065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685
3300012977|Ga0134087_10067568	All Organisms → cellular organisms → Bacteria	1443
3300014154|Ga0134075_10455733	All Organisms → cellular organisms → Bacteria	569
3300015371|Ga0132258_10128137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6047
3300016371|Ga0182034_11229696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	652
3300016404|Ga0182037_11740399	All Organisms → cellular organisms → Bacteria	556
3300017654|Ga0134069_1115433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	882
3300018081|Ga0184625_10488566	All Organisms → cellular organisms → Bacteria	624
3300018433|Ga0066667_10200698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1465
3300019881|Ga0193707_1009036	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3400
3300019881|Ga0193707_1070356	All Organisms → cellular organisms → Bacteria	1086
3300019881|Ga0193707_1155827	All Organisms → cellular organisms → Bacteria	632
3300019890|Ga0193728_1167364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	952
3300020000|Ga0193692_1008330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2588
3300020018|Ga0193721_1002014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5354
3300020170|Ga0179594_10356593	All Organisms → cellular organisms → Bacteria	555
3300020199|Ga0179592_10296021	All Organisms → cellular organisms → Bacteria	720
3300021086|Ga0179596_10071312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1508
3300021344|Ga0193719_10046234	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1885
3300022756|Ga0222622_10030570	All Organisms → cellular organisms → Bacteria	2867
3300022756|Ga0222622_10337761	All Organisms → cellular organisms → Bacteria	1046
3300025926|Ga0207659_10243463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1456
3300025930|Ga0207701_10001666	All Organisms → cellular organisms → Bacteria	23223
3300025933|Ga0207706_11432907	All Organisms → cellular organisms → Bacteria	566
3300026285|Ga0209438_1175081	All Organisms → cellular organisms → Bacteria	565
3300026322|Ga0209687_1039055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1545
3300026326|Ga0209801_1008907	All Organisms → cellular organisms → Bacteria	5293
3300026326|Ga0209801_1180927	All Organisms → cellular organisms → Bacteria	866
3300026327|Ga0209266_1035811	All Organisms → cellular organisms → Bacteria	2579
3300026332|Ga0209803_1261187	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596
3300026523|Ga0209808_1131131	All Organisms → cellular organisms → Bacteria	1008
3300026689|Ga0208579_100040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2725
3300027882|Ga0209590_10475415	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	807
3300028379|Ga0268266_10063384	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3191
3300028784|Ga0307282_10002251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	7007
3300028810|Ga0307294_10055780	All Organisms → cellular organisms → Bacteria	1161
3300028881|Ga0307277_10102120	All Organisms → cellular organisms → Bacteria	1217
3300030844|Ga0075377_11653443	All Organisms → cellular organisms → Bacteria	569
3300030916|Ga0075386_12104313	All Organisms → cellular organisms → Bacteria	537
3300031231|Ga0170824_114625850	All Organisms → cellular organisms → Bacteria	675
3300031446|Ga0170820_14733046	All Organisms → cellular organisms → Bacteria	719
3300031469|Ga0170819_15561544	All Organisms → cellular organisms → Bacteria	965
3300031474|Ga0170818_108493981	All Organisms → cellular organisms → Bacteria	826
3300031474|Ga0170818_113974694	All Organisms → cellular organisms → Bacteria	635
3300031573|Ga0310915_10601706	All Organisms → cellular organisms → Bacteria	779
3300031720|Ga0307469_10181374	All Organisms → cellular organisms → Bacteria	1620
3300031833|Ga0310917_10050462	All Organisms → cellular organisms → Bacteria	2554
3300031942|Ga0310916_11453525	Not Available	560
3300031954|Ga0306926_10755085	All Organisms → cellular organisms → Bacteria	1176
3300031954|Ga0306926_12675007	All Organisms → cellular organisms → Bacteria	542
3300032261|Ga0306920_100021616	All Organisms → cellular organisms → Bacteria → Proteobacteria	8992

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.41%
Host-Associated	Host-Associated	8.59%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.28%
Plants	Host-Associated → Plants	8.59%
Aquatic	Environmental → Aquatic	3.12%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.25%
Sediment	Environmental → Aquatic → Sediment	3.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.34%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.25%
Loam	Environmental → Terrestrial → Soil → Loam	7.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.34%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%

Habitat

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.12%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.34%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.56%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.78%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000754	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB	Environmental
3300002903	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um Nextera	Environmental
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental
3300006169	Termite nest microbial communities from Madurai, India	Environmental
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental
3300026689	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN581 (SPAdes)	Environmental
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11851J11668_10006211	3300000754	Soil	PGSTPAVILLQAKTKTNIDKTMDGKKLPSGNYIMSVVSEGKTASILFTIK*
JGI24801J43971_10101131	3300002903	Soil	VILLQGKTKTNIDKTMDGKKLPSGNYXMSVVSEGKTASILVTIK*
JGI25389J43894_10363432	3300002916	Grasslands Soil	TPAVLLLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0062590_1006991061	3300004157	Soil	LLQGKTKTNLDKTLDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0066674_102366771	3300005166	Soil	QGKTKTNLDKTMDGKKLAAGNYLMSVVSEAKTASILVTIK*
Ga0066679_107440402	3300005176	Soil	KNEPVPGSTPAVLLLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0066685_102420203	3300005180	Soil	LLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0066685_103429991	3300005180	Soil	LQGKTKTNLDKTMDGKKLPAGNYIMSVVSEGKTASILFTIR*
Ga0066676_106852161	3300005186	Soil	QGKTKTNLDKTMDGKKLPAGNYIMSVVSEGKTASILFTIR*
Ga0066675_100587755	3300005187	Soil	VILLQSKTKTTIDKTMDGKKLSAGDYIMSVISESKTASILFTIK*
Ga0066675_105758171	3300005187	Soil	ILLHGKTKTNIDKTMGGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0065704_108200692	3300005289	Switchgrass Rhizosphere	VNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0066388_1036911132	3300005332	Tropical Forest Soil	LLQGKTKTNLDKTMDGKKLGPGNYIMSVVSEGKTASILFIIK*
Ga0070675_1015704152	3300005354	Miscanthus Rhizosphere	QGKTKTNLDKTMDGKKLAVGNYVMSVVSEGTTASFFVTTK*
Ga0070709_101348951	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	NEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNHVMSVVSEGKSASILVTIK*
Ga0066681_101268753	3300005451	Soil	PGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0070662_1015806861	3300005457	Corn Rhizosphere	STPAVILLQGKTKTNLDKTMDGKKLAAGNYDMSVVSEGKTASILITIK*
Ga0066698_106338212	3300005558	Soil	LQGKTKTNLDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0066698_110541802	3300005558	Soil	TKTTIDKTMDGKKLSPGNYVMSVVSEGKTASILFTIK*
Ga0066708_102171863	3300005576	Soil	ESIPDSTPAVILLQGKTKTTIDKTMDGKKLSPGNYVMSVVSEGKTASILFTIK*
Ga0068857_1021145821	3300005577	Corn Rhizosphere	VPDSTPAVILLQGKSKTNLDKTMDGKKLGAGNYVVSVVSEGKTASILVTIK*
Ga0066903_1015718572	3300005764	Tropical Forest Soil	EERTGSKLNARGILLQGKIKTNLDKTLDGKKLAAGNYVISVVSEGKTASILVTIK*
Ga0066903_1031226711	3300005764	Tropical Forest Soil	VNAVNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAMSVVSEGKTASILVTIK*
Ga0066903_1031302731	3300005764	Tropical Forest Soil	NAKNEPVPDATPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILLTIK*
Ga0066903_1033488543	3300005764	Tropical Forest Soil	PAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASVLLTIK*
Ga0066656_107438281	3300006034	Soil	ILLQGKTKTTIDKTMDGKKLSPGNYVMSVVSEGKTASILFTIK*
Ga0082029_13314014	3300006169	Termite Nest	NLDKTMDGKKLGAGNYVMSVVSEGKTASILLTIK*
Ga0070712_1017170221	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PGSTPAVILLQGKTKTNLEKTMDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0066665_102456142	3300006796	Soil	QSKDAMIIVNVHAVNAKNEPVPGSTPAMILLQGKTKTNLDKTMDGKKLSAGNYILSVVSEGKTASILVTIK*
Ga0075428_1019181722	3300006844	Populus Rhizosphere	ILLQGKTKTTIDKTMDGKKLSTGNYVMSVVSEGKTASILFAIK*
Ga0066709_1031556431	3300009137	Grasslands Soil	GKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0111538_100420951	3300009156	Populus Rhizosphere	GEREERTGSRLNARGILLQGKTKTNLDKTLDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0075423_112530521	3300009162	Populus Rhizosphere	KTKTTIDKTMDGKKLSTGNYVMSVVSEGKTASILFAIK*
Ga0126380_110971482	3300010043	Tropical Forest Soil	LLQGKTKTNLDKTMDGKKLAAGNYGMSVVSEGKTASIFVTIK*
Ga0126380_116127011	3300010043	Tropical Forest Soil	NQNHLDKTMDGKKLGPGNYIMSVVSEGKTASILFTIK*
Ga0126384_100083795	3300010046	Tropical Forest Soil	VILLQGKTKTNLDKTIDGKKLGPGNYIMSVVSEGKTASILFIIK*
Ga0126382_100453332	3300010047	Tropical Forest Soil	VILLQGKTKTNLDKITAGVEPGNYIMSVVSEGKTASILFIIK*
Ga0126382_107203842	3300010047	Tropical Forest Soil	VLNAGGILLQGKTKTNLDKTMAGKKLVAGNYVMSVVNEGKTASILVTIK*
Ga0134082_102623752	3300010303	Grasslands Soil	VNAKNEPIPGSTPAVILLQGKTKTTIDKTMDGKKLSPGNYVMSVVSEGKTASILFTIK*
Ga0134088_107260781	3300010304	Grasslands Soil	QGKTKTTIDKTMDGKKLSPGNYVMSVVSEGKTASILFTIK*
Ga0134086_100352063	3300010323	Grasslands Soil	LLQGKTKTNIDKTMDGKKLPAGNYVMSVVSEGKTASILFTIK*
Ga0126370_121658092	3300010358	Tropical Forest Soil	SAPAVILLQGKNKTNLDKTMDGKKLASGNYVMSVVSEGKTASILMTIK*
Ga0126379_111264641	3300010366	Tropical Forest Soil	PVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTGSILLTIK*
Ga0126379_119997552	3300010366	Tropical Forest Soil	QGKTKTNIDKTMDGKKLAAGNYVMSVVSEGKTASILFTIK*
Ga0126379_126066803	3300010366	Tropical Forest Soil	GKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0126383_108843611	3300010398	Tropical Forest Soil	TPAVILLQGKTKTNLDKTIDGKKLGPGNYIMSVVSEGKTASILFIIK*
Ga0126383_114956641	3300010398	Tropical Forest Soil	LLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASIFVTIK*
Ga0126383_116433501	3300010398	Tropical Forest Soil	TKTSLDKTMDGKKLPTGNYIMSVVSEGKTASILLTIK*
Ga0137393_106830461	3300011271	Vadose Zone Soil	TKTNIDKTMDGKKLPAGNYIMSVVSEGKTAIILFTIK*
Ga0137463_13082471	3300011444	Soil	KTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILLTIK*
Ga0137364_103358712	3300012198	Vadose Zone Soil	VPGSTPAVLLLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0137364_103769012	3300012198	Vadose Zone Soil	AVILLQGKTKTNIDKTMDGKKLPAGNYVMSVVSEGKTASILFTIK*
Ga0137383_103009801	3300012199	Vadose Zone Soil	ESKSDMIIVNVNMVTAKNEPVQGSEPAVILLEGKTKTNIDKTMDGKKLPAGNYIMSVVSEGQTASILFTIK*
Ga0137382_106107531	3300012200	Vadose Zone Soil	VILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0137363_104971022	3300012202	Vadose Zone Soil	VILLQGKTKTNLDKTMDGKKLAAGNYIMSVVSQGKTASILVTIK*
Ga0137362_103553791	3300012205	Vadose Zone Soil	TNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0137380_104041962	3300012206	Vadose Zone Soil	LQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0137381_116138921	3300012207	Vadose Zone Soil	AVILLQGKTKTNLDKTMDGKKLAAGNYVVSVVSEGKTASILLTIK*
Ga0137381_117863962	3300012207	Vadose Zone Soil	QGKTKTNLDKTMDGKKLAAGNYIMSVVSQGETASILFTIK*
Ga0137379_107973051	3300012209	Vadose Zone Soil	KTNIDKTMDGKKLPPGNYIMSVVSEGKTASILFTIK*
Ga0137378_100346771	3300012210	Vadose Zone Soil	VPGSPPAVILLQGKTKTTIDKTMDGKKLSAGNYIMSVVSEGKTASVLFTIK*
Ga0137378_106019302	3300012210	Vadose Zone Soil	VPGSPPAVILLQGKTKTTIDKTMDGKKLSAGNYIMSVVSEAKTASILFIIK*
Ga0137370_100784321	3300012285	Vadose Zone Soil	AVLLLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0137370_107674481	3300012285	Vadose Zone Soil	TPAVLLLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVIIK*
Ga0137372_110204241	3300012350	Vadose Zone Soil	VILLQGKTKTTIDKTMDGKKLSAGNYIMSVVSEAKTASILFIIK*
Ga0137386_106089821	3300012351	Vadose Zone Soil	VNAKNELVPGSTPAVLLLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK*
Ga0137369_102590621	3300012355	Vadose Zone Soil	PPAVILLQGKTKTPIDQTMDGKTLSAGNYIMSVVSEGKTASVLFTIK*
Ga0137369_111232681	3300012355	Vadose Zone Soil	NMVNAKNEPVQGSTPAVILLQGKTKTTIDKTMDGKKLSAGNYIMSVVSEGKTASILFTIK
Ga0137371_111714742	3300012356	Vadose Zone Soil	LLQGKTKTNINKAMDGKKLSAGNYIMSVVSEGKIASILFIIK*
Ga0137384_106910481	3300012357	Vadose Zone Soil	QGSTPAVILLEGKTKTNIDKTMDGKKLPAGNYIMSVVSEGQTASILFTIK*
Ga0137419_103522591	3300012925	Vadose Zone Soil	LQGKTKTSLDKTMDGKKLAAGNYVMSVVSEGKTASILLTIK*
Ga0137404_100139336	3300012929	Vadose Zone Soil	ILLQGKTKTTIDKTMDGKKLPAGNYIMSVVSEGNTASILFTIK*
Ga0137404_102945413	3300012929	Vadose Zone Soil	ILLQGKTKTTIDKTMDGKKLPAGNYIMSVVSEGNTASILFKIK*
Ga0137407_111947301	3300012930	Vadose Zone Soil	GKTKTTIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0126375_107179562	3300012948	Tropical Forest Soil	VILLQGKTKTNLDKTMDGKKLGPGNYIMSVVSEGKTASILFTIK*
Ga0164303_111084882	3300012957	Soil	VNAVNAKNEPVPGSAPAVILLHGKTKTNLDKTMDGKKLAAGNYIMSVVSEGKTASILVTIK*
Ga0126369_130391971	3300012971	Tropical Forest Soil	VNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYILSVVSEGKTASIIITIK*
Ga0134077_102900652	3300012972	Grasslands Soil	NVNMVNAKNEPVQGSTPAVILPQGKTKTNLDKTMDGKKLPAGNYIMSVVSKGKTASILFTIQ*
Ga0134087_100675681	3300012977	Grasslands Soil	KTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0134075_104557332	3300014154	Grasslands Soil	VLLLQGKTKTNIDKTTDGKKLPAGNYIMSVVSEGKTASILFTIK*
Ga0132258_101281375	3300015371	Arabidopsis Rhizosphere	LLQGKTKTNLDKTLDGKKLPAGNYVMSVVSEGKTASILVTIK*
Ga0182034_112296961	3300016371	Soil	TGSRLNARGILLRGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK
Ga0182037_117403991	3300016404	Soil	KLIARGILLQGKTKTNLDKTMDGKKPAAGIYVMSVVSEGKTASSFVTIK
Ga0134069_11154331	3300017654	Grasslands Soil	ILLQGKTKTNLDKTMDGKELPAGNYIMSVMSEGKTASILFTIK
Ga0184625_104885661	3300018081	Groundwater Sediment	AVILLQGKTKTNLDKTMDGKKLSAGNYIMSVISEGKTARILVTIK
Ga0066667_102006981	3300018433	Grasslands Soil	LQGKTKTNLDKTMDGKKLPAGNYIMSVVSEGKTASILFTIR
Ga0193707_10090364	3300019881	Soil	GSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVVSVVSEGKTASILLTIK
Ga0193707_10703562	3300019881	Soil	VNSVNAKSEPVPGSTPAVILLQGKNKTNLDKTMDGKKLAAGNHVVSVVSEGKTASILVTI
Ga0193707_11558271	3300019881	Soil	TKTNLDKTMDGKKLAAGNYVVSAVSEGKTASILVTIK
Ga0193728_11673642	3300019890	Soil	SVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVVSAVSEGKTASILVTIK
Ga0193692_10083304	3300020000	Soil	GSAPAVILLQGKTKTNLDKTMDGKKLAAGNYIMSVVSEGKTASILVTIK
Ga0193721_10020146	3300020018	Soil	MIIVNVNAVNAKNEPVPGSTPAVSLLQGKTKTNLDKTMDGKKLAAGNYVVSVVSEGKTASILLTIK
Ga0179594_103565932	3300020170	Vadose Zone Soil	VILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK
Ga0179592_102960211	3300020199	Vadose Zone Soil	GPGSPPAVILLQGKTKTNLDKTMDGKKLAAGNYIMSVISEGKTASILVTIK
Ga0179596_100713121	3300021086	Vadose Zone Soil	NAVNAKTEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILLTIK
Ga0193719_100462343	3300021344	Soil	GKTKTNLDKTMDGRKLAAGNYVVSVVSEGKTASILVTIK
Ga0222622_100305701	3300022756	Groundwater Sediment	LLQGKTKTTIDKTMDGKKLPAGNLMSVVSEGKTASILFTIK
Ga0222622_103377613	3300022756	Groundwater Sediment	VNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVVSVVSEGKTASILVTIK
Ga0207659_102434632	3300025926	Miscanthus Rhizosphere	AVNAKNEPVPDSTPAVILLQGKSKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK
Ga0207701_1000166622	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TKTNLDKTLDGKKLPAGNYVMSVVSEGKTASILVTIK
Ga0207706_114329071	3300025933	Corn Rhizosphere	STPAVILLQGKTKTNLDKTMDGKKLAAGNYDMSVVSEGKTASILITIK
Ga0209438_11750811	3300026285	Grasslands Soil	KTKTSLDKTMDGKKLAAGNYVMSVVSEGKTASILLTIK
Ga0209687_10390552	3300026322	Soil	NVNMVNAKNEPITGSAPAVILLQGKTKATIDKTVDGKKLSPRNYVMSVVSEGKTASILFTIK
Ga0209801_10089073	3300026326	Soil	MIIVNVNPVTAKNEPVPGSTPAVLLLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK
Ga0209801_11809271	3300026326	Soil	KTKTNIDKTMDGKKLPAGNYIMSVVSEGKTANILFTIK
Ga0209266_10358114	3300026327	Soil	LLQGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK
Ga0209803_12611872	3300026332	Soil	LQGKTKTNLDKTMDGKKLPAGNYIMSVVSEGKTASILFTIK
Ga0209808_11311312	3300026523	Soil	VILLEGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTANILFTIK
Ga0208579_1000401	3300026689	Soil	EPVPGSTPAVFLLQGKTKTTIDKTMDGKKLSPGNYIMSVVREGKTASILFTIK
Ga0209590_104754151	3300027882	Vadose Zone Soil	DMIIVNVNMVTAKNEPVQGSTPAVILLEGKTKTNIDKTMDGKKLPAGNYIMSVVSEGKTANILFTIK
Ga0268266_100633841	3300028379	Switchgrass Rhizosphere	GKTKTNLDKTMDGKKLAPGNYVMSVVSEGKTASILVTIK
Ga0307282_100022511	3300028784	Soil	TPALILLQGKTKTTIDKTMDGKKLPAGNYIMSVVSEGNTASILFTIK
Ga0307294_100557801	3300028810	Soil	KTNLDKTMDGKKLAAGNYVVSVVSEGKTASILVTIK
Ga0307277_101021201	3300028881	Soil	PAVSLLQGKTKTNLDKTMDGKKLAAGNYVVSVVSEGKTASILLTIK
Ga0075377_116534432	3300030844	Soil	VHAVNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTI
Ga0075386_121043131	3300030916	Soil	AKNEPVPGSTPAVVLLQGKTKTNLDKTMDGKKLAAGNYLMSLVSEGKTASILVTIK
Ga0170824_1146258501	3300031231	Forest Soil	MIIVNVNAANAKNEPVPGSTAAVILLQGKTKTNLDKTMDGKKLAAGNYFVSVVSEGKSASILVTIK
Ga0170820_147330462	3300031446	Forest Soil	VNAKNEPVPGSTPAVILLQGKTKTNLNKTMDGKKLAAGNYVMSVVSEGKTASILVTIE
Ga0170819_155615442	3300031469	Forest Soil	VNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK
Ga0170818_1084939811	3300031474	Forest Soil	MIIVNVNAANAKNEPVPGSTAAVILLQGKTKTNLDKTMDGKKLAAGNYFVSVVSEGKTASILVTIK
Ga0170818_1139746942	3300031474	Forest Soil	VHAVNAKNEPVPGSTPAVILLQGKTKTNLDKTMDGKKLAAGNYVMSAVSERKTASILVTI
Ga0310915_106017061	3300031573	Soil	NAKNEPVPGSTPAVILLQGKTKTNLNKIMDGKKLAAGNHILSVVSEGKTASILLTIK
Ga0307469_101813741	3300031720	Hardwood Forest Soil	NNEPVPGSTPAVILLEGKTETNLDKTMDGKKLAAGNYVMSVVSEGKTASILLTIK
Ga0310917_100504625	3300031833	Soil	MIIVNVNAMNAKNEPVPGSTPAVILLQGKTKTNLNKIMDGKKLAAGNHILSVVSEGKTASILLTIK
Ga0310916_114535251	3300031942	Soil	QGKTKTNLNKIMDGKKLAAGNHILSVVSEGKTASILLTIK
Ga0306926_107550851	3300031954	Soil	MNAVNAKNEPVPGSTPAVILLEGKTKTNLDKTMDGKKLAAGNYVLSVVSEGKTASILVTI
Ga0306926_126750072	3300031954	Soil	ILLQGKTKTNLDKTMDGKKPAAGIYVMSVVSEGKTASSFVTIK
Ga0306920_1000216166	3300032261	Soil	MIILNMNAVNAKNEPVPGSTAAVILLEGKTKTNLDKTMDGKKLAAGNYVMSVVSEGKTASILVTIK