Metagenome Family F065090

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065090
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	93 residues
Representative Sequence	VKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDAHDQPTSEPSPPQPVDWPPRDG
Number of Associated Samples	103
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.96 %
% of genes near scaffold ends (potentially truncated)	36.72 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.594 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.188 % of family members)
Environment Ontology (ENVO)	Unclassified (42.188 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.188 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 45.05% Coil/Unstructured: 54.95%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00749	tRNA-synt_1c	30.47
PF00072	Response_reg	3.91
PF13307	Helicase_C_2	1.56
PF04389	Peptidase_M28	1.56
PF07676	PD40	1.56
PF01726	LexA_DNA_bind	1.56
PF12704	MacB_PCD	1.56
PF03734	YkuD	0.78
PF12867	DinB_2	0.78
PF02632	BioY	0.78
PF02687	FtsX	0.78
PF03706	LPG_synthase_TM	0.78
PF04964	Flp_Fap	0.78
PF02142	MGS	0.78
PF08450	SGL	0.78
PF13443	HTH_26	0.78
PF13489	Methyltransf_23	0.78
PF00196	GerE	0.78
PF00501	AMP-binding	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	30.47
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.78
COG1268	Biotin transporter BioY	Coenzyme transport and metabolism [H]	0.78
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.78
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.78
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.78
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.78
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
All Organisms	root	All Organisms	41.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
cellular organisms	root	All Organisms → cellular organisms	41.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	20.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	20.31 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.78 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	19.53 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	19.53 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.78 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.78 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	13.28 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	6.25 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	10.16 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	6.25 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	3.12 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.59 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	10.16 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	6.25 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	3.12 %
Gemmata obscuriglobus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata obscuriglobus	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2396413	Not Available	571	Open in IMG/M
3300003267\|soilL1_10100217	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata obscuriglobus	2210	Open in IMG/M
3300003319\|soilL2_10252228	Not Available	1297	Open in IMG/M
3300003321\|soilH1_10299776	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300004114\|Ga0062593_101086597	Not Available	829	Open in IMG/M
3300004156\|Ga0062589_102149599	Not Available	570	Open in IMG/M
3300004463\|Ga0063356_103149149	Not Available	711	Open in IMG/M
3300004463\|Ga0063356_104922589	Not Available	574	Open in IMG/M
3300005293\|Ga0065715_10219673	Not Available	1266	Open in IMG/M
3300005294\|Ga0065705_11191086	Not Available	503	Open in IMG/M
3300005327\|Ga0070658_11207099	Not Available	657	Open in IMG/M
3300005331\|Ga0070670_100062013	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3209	Open in IMG/M
3300005339\|Ga0070660_100157110	Not Available	1831	Open in IMG/M
3300005343\|Ga0070687_100093561	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300005345\|Ga0070692_11029754	Not Available	577	Open in IMG/M
3300005347\|Ga0070668_102076224	Not Available	524	Open in IMG/M
3300005354\|Ga0070675_101587424	Not Available	604	Open in IMG/M
3300005356\|Ga0070674_100561330	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005356\|Ga0070674_101902907	Not Available	540	Open in IMG/M
3300005456\|Ga0070678_101035865	Not Available	755	Open in IMG/M
3300005456\|Ga0070678_101239609	Not Available	693	Open in IMG/M
3300005459\|Ga0068867_100399690	Not Available	1158	Open in IMG/M
3300005466\|Ga0070685_10730802	Not Available	724	Open in IMG/M
3300005526\|Ga0073909_10474044	Not Available	602	Open in IMG/M
3300005539\|Ga0068853_100144018	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2140	Open in IMG/M
3300005539\|Ga0068853_100587984	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300005548\|Ga0070665_100026395	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5850	Open in IMG/M
3300005614\|Ga0068856_101191762	Not Available	778	Open in IMG/M
3300005615\|Ga0070702_100831263	Not Available	717	Open in IMG/M
3300005615\|Ga0070702_101621704	Not Available	536	Open in IMG/M
3300005616\|Ga0068852_102094436	Not Available	588	Open in IMG/M
3300005617\|Ga0068859_102826209	Not Available	533	Open in IMG/M
3300005834\|Ga0068851_10453408	Not Available	762	Open in IMG/M
3300005844\|Ga0068862_100000229	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	62419	Open in IMG/M
3300006169\|Ga0082029_1430509	Not Available	632	Open in IMG/M
3300006169\|Ga0082029_1705324	Not Available	702	Open in IMG/M
3300006845\|Ga0075421_100021618	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	8094	Open in IMG/M
3300006845\|Ga0075421_101732516	Not Available	675	Open in IMG/M
3300006845\|Ga0075421_102045132	Not Available	609	Open in IMG/M
3300006846\|Ga0075430_100016680	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6256	Open in IMG/M
3300006846\|Ga0075430_100420839	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300006846\|Ga0075430_101060577	Not Available	667	Open in IMG/M
3300006847\|Ga0075431_100435535	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300006847\|Ga0075431_101445053	Not Available	647	Open in IMG/M
3300006852\|Ga0075433_10043427	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	3901	Open in IMG/M
3300006871\|Ga0075434_100362304	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300006880\|Ga0075429_101836062	Not Available	526	Open in IMG/M
3300006881\|Ga0068865_100278431	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1331	Open in IMG/M
3300006894\|Ga0079215_10217942	Not Available	982	Open in IMG/M
3300006904\|Ga0075424_100000265	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	38218	Open in IMG/M
3300006954\|Ga0079219_11378520	Not Available	628	Open in IMG/M
3300007004\|Ga0079218_10024802	All Organisms → cellular organisms → Bacteria	3358	Open in IMG/M
3300009094\|Ga0111539_10074212	All Organisms → cellular organisms → Bacteria	4008	Open in IMG/M
3300009100\|Ga0075418_10807018	Not Available	1013	Open in IMG/M
3300009147\|Ga0114129_10700194	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300009156\|Ga0111538_12737453	Not Available	618	Open in IMG/M
3300009162\|Ga0075423_10004058	All Organisms → cellular organisms → Bacteria	13519	Open in IMG/M
3300009176\|Ga0105242_11315091	Not Available	747	Open in IMG/M
3300009789\|Ga0126307_10015933	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5581	Open in IMG/M
3300009840\|Ga0126313_10258382	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1353	Open in IMG/M
3300009840\|Ga0126313_10934307	Not Available	709	Open in IMG/M
3300010036\|Ga0126305_10019981	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3514	Open in IMG/M
3300010037\|Ga0126304_10027042	All Organisms → cellular organisms → Bacteria	3339	Open in IMG/M
3300010037\|Ga0126304_10109379	Not Available	1756	Open in IMG/M
3300010041\|Ga0126312_11326439	Not Available	533	Open in IMG/M
3300010166\|Ga0126306_10046883	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2980	Open in IMG/M
3300010375\|Ga0105239_10028717	Not Available	6115	Open in IMG/M
3300012212\|Ga0150985_102730244	Not Available	623	Open in IMG/M
3300012212\|Ga0150985_103665832	Not Available	542	Open in IMG/M
3300012212\|Ga0150985_120639772	Not Available	654	Open in IMG/M
3300012212\|Ga0150985_122682105	Not Available	857	Open in IMG/M
3300012517\|Ga0157354_1067207	Not Available	553	Open in IMG/M
3300012895\|Ga0157309_10337250	Not Available	520	Open in IMG/M
3300012960\|Ga0164301_10364138	Not Available	999	Open in IMG/M
3300013102\|Ga0157371_11590234	Not Available	511	Open in IMG/M
3300013104\|Ga0157370_11494311	Not Available	607	Open in IMG/M
3300013297\|Ga0157378_10896752	Not Available	917	Open in IMG/M
3300013297\|Ga0157378_11298526	Not Available	769	Open in IMG/M
3300013308\|Ga0157375_11094680	Not Available	933	Open in IMG/M
3300015371\|Ga0132258_10133696	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5920	Open in IMG/M
3300015371\|Ga0132258_10401116	All Organisms → cellular organisms → Bacteria	3407	Open in IMG/M
3300015371\|Ga0132258_13004613	Not Available	1169	Open in IMG/M
3300015374\|Ga0132255_100895908	Not Available	1326	Open in IMG/M
3300017792\|Ga0163161_10355857	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300018469\|Ga0190270_10095688	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2256	Open in IMG/M
3300018476\|Ga0190274_10015525	All Organisms → cellular organisms → Bacteria	4855	Open in IMG/M
3300022756\|Ga0222622_10201668	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300025321\|Ga0207656_10723893	Not Available	510	Open in IMG/M
3300025901\|Ga0207688_10075681	Not Available	1916	Open in IMG/M
3300025908\|Ga0207643_10102796	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1677	Open in IMG/M
3300025909\|Ga0207705_10130236	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1872	Open in IMG/M
3300025918\|Ga0207662_10448030	Not Available	882	Open in IMG/M
3300025920\|Ga0207649_10002663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	9909	Open in IMG/M
3300025920\|Ga0207649_10585823	Not Available	857	Open in IMG/M
3300025923\|Ga0207681_10383818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1131	Open in IMG/M
3300025926\|Ga0207659_11250945	Not Available	638	Open in IMG/M
3300025931\|Ga0207644_11210904	Not Available	635	Open in IMG/M
3300025932\|Ga0207690_10796688	Not Available	781	Open in IMG/M
3300025937\|Ga0207669_11288480	Not Available	620	Open in IMG/M
3300025945\|Ga0207679_10009536	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6222	Open in IMG/M
3300026041\|Ga0207639_10214183	Not Available	1660	Open in IMG/M
3300026121\|Ga0207683_12191647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	501	Open in IMG/M
3300027691\|Ga0209485_1281954	Not Available	544	Open in IMG/M
3300027775\|Ga0209177_10358510	Not Available	573	Open in IMG/M
3300027886\|Ga0209486_10729188	Not Available	642	Open in IMG/M
3300027907\|Ga0207428_10191396	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300027909\|Ga0209382_10036324	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5922	Open in IMG/M
3300027909\|Ga0209382_10199393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2295	Open in IMG/M
3300027909\|Ga0209382_10588600	Not Available	1213	Open in IMG/M
3300027909\|Ga0209382_11814415	Not Available	593	Open in IMG/M
3300028379\|Ga0268266_10016182	All Organisms → cellular organisms → Bacteria	6378	Open in IMG/M
3300028790\|Ga0307283_10210898	Not Available	559	Open in IMG/M
3300031548\|Ga0307408_101264835	Not Available	690	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1000107	All Organisms → cellular organisms → Bacteria	378180	Open in IMG/M
3300031847\|Ga0310907_10603089	Not Available	598	Open in IMG/M
3300031852\|Ga0307410_10831099	Not Available	787	Open in IMG/M
3300031892\|Ga0310893_10039722	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1509	Open in IMG/M
3300031938\|Ga0308175_100005551	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	8973	Open in IMG/M
3300031938\|Ga0308175_100574077	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300031939\|Ga0308174_10220728	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1457	Open in IMG/M
3300031944\|Ga0310884_10313696	Not Available	878	Open in IMG/M
3300031995\|Ga0307409_100365087	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300032002\|Ga0307416_100040914	All Organisms → cellular organisms → Bacteria	3606	Open in IMG/M
3300032122\|Ga0310895_10144002	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300033412\|Ga0310810_10006821	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	12949	Open in IMG/M
3300033412\|Ga0310810_10008562	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	11780	Open in IMG/M
3300033475\|Ga0310811_10683766	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.72%
Environmental	Environmental	38.28%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.72%
Terrestrial	Environmental → Terrestrial	37.50%
Aquatic	Environmental → Aquatic	0.78%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	39.84%
Soil	Environmental → Terrestrial → Soil	37.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.88%
Sediment	Environmental → Aquatic → Sediment	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.03%
Loam	Environmental → Terrestrial → Soil → Loam	4.69%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.78%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.03%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.25%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.12%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.12%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.34%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.34%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.56%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.56%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23964132	3300000033	Soil	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEXGXRLLWKRXALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRDG*
soilL1_101002171	3300003267	Sugarcane Root And Bulk Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKLQVELDGALYQVRLWAKMDEHGQRLLWKREALVWEGLLVSDSHDQPTAEPSPPQPVDWPPRDG*
soilL2_102522283	3300003319	Sugarcane Root And Bulk Soil	VKIPRKTIRYECVGGPRDGDLVLVQRTKTHVQLDGALYQVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQPTSEPSPPQPVDWPSRDG*
soilH1_102997763	3300003321	Sugarcane Root And Bulk Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKQHVHLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDAHDQPTAEPSPPQPVDWPPRDG*
Ga0062593_1010865971	3300004114	Soil	VKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG*
Ga0062589_1021495991	3300004156	Soil	MPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0063356_1031491491	3300004463	Arabidopsis Thaliana Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0063356_1049225891	3300004463	Arabidopsis Thaliana Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHHVELDGALYEVRLWAKMDEHGQRLLWKREALIWEGLLTSDAKDQPTTEAPPPQPVDWPLRDG*
Ga0065715_102196731	3300005293	Miscanthus Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPG
Ga0065705_111910861	3300005294	Switchgrass Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSP
Ga0070658_112070991	3300005327	Corn Rhizosphere	APRPPVFTVKMPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0070670_1000620131	3300005331	Switchgrass Rhizosphere	TIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0070660_1001571103	3300005339	Corn Rhizosphere	MDCSVRVPRDWSLPNPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0070687_1000935612	3300005343	Switchgrass Rhizosphere	MPRKTSRYECVGGPRDGDMVLSQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0070692_110297541	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTA
Ga0070668_1020762241	3300005347	Switchgrass Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRLKQNVELDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTSNAPDQPTAEPSPPQPVDWPLREG*
Ga0070675_1015874241	3300005354	Miscanthus Rhizosphere	PVSRFPSPFVKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG*
Ga0070674_1005613303	3300005356	Miscanthus Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRTKHNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLITDTGSEATEPAPPQPIDCPVRDG*
Ga0070674_1019029071	3300005356	Miscanthus Rhizosphere	IVVSGSPRPGHLQPVALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKHHVRLDGALYEVRLWTKMDEHGQRLLWKREALVWEGLLVSDSQNQPTAEPSPPQPVDWPPRVG*
Ga0070678_1010358651	3300005456	Miscanthus Rhizosphere	PRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0070678_1012396092	3300005456	Miscanthus Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRTKHNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLITDTGSEATEPAPPQPIDCPLRDG*
Ga0068867_1003996902	3300005459	Miscanthus Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0070685_107308022	3300005466	Switchgrass Rhizosphere	MKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0073909_104740441	3300005526	Surface Soil	MLVSGSPNPVTSFRVDAQAVKIPRKTIRYECVGGPRDGDLVLIQRTKHLVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPHQPTTEPSPPQPVD
Ga0068853_1001440182	3300005539	Corn Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0068853_1005879843	3300005539	Corn Rhizosphere	GPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0070665_1000263955	3300005548	Switchgrass Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRLKQNVELDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTSNAPDQPTAEPSPPQPVDWPVREG*
Ga0068856_1011917621	3300005614	Corn Rhizosphere	VSESPDPATFDPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDDALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0070702_1008312631	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0070702_1016217041	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTTEAPPPQPVDWPLRDG*
Ga0068852_1020944361	3300005616	Corn Rhizosphere	GGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLITDTGAEATEPAPPQPIDCPVRDG*
Ga0068859_1028262091	3300005617	Switchgrass Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLITETGSEATEPAPPQPIDCPVRDG*
Ga0068851_104534081	3300005834	Corn Rhizosphere	GGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0068862_10000022959	3300005844	Switchgrass Rhizosphere	VSRFPSPFVKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG*
Ga0082029_14305092	3300006169	Termite Nest	MLVSGPPRPDPLFLNAPPSVKIPRKTIRYECVGGPRDGDVVLIQRTKHQGRLDGALYEVRLWTKMDEHGQRLLWKREALVWEGLLVSDAADQATTEPS
Ga0082029_17053242	3300006169	Termite Nest	LNPVARRTVKIPRKTIRYECVGGPRDGDLVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSRDQPTA
Ga0075421_1000216188	3300006845	Populus Rhizosphere	VTPAVFPGRRVDGSVWSPPDPLFLRTQAVKIPRKTIRYECVGGPRDGDVVLIQRTKHEVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG*
Ga0075421_1017325161	3300006845	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRTKTEVELEGALYLVRLWAKMDERGQRLLWKREALVWEGLLVSDSDGAANVQPTPPQPVDWPSRDG*
Ga0075421_1020451321	3300006845	Populus Rhizosphere	VVKIPRKTIRYECVGGPRDGDLVLIQRTKQNVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTSAASDQPITEPSPP
Ga0075430_1000166805	3300006846	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRTKHEVRLDGALYQVRLWTKMDERGQRLLWKREALVWEGLLVPETSGDANVQPTPPQPVDSPTRGG*
Ga0075430_1004208391	3300006846	Populus Rhizosphere	LPLPVSRFPSPFVKIPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTSGAKDQPTAEPPPPQPVDWPRRGG*
Ga0075430_1010605771	3300006846	Populus Rhizosphere	PVVKIPRKTIRYECVGGPRDGDVVLIQRTKHNVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSSASDQPTAEPSPPQPVDWPPRDG*
Ga0075431_1004355353	3300006847	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHNVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSSASDQPTAEPSPPQPVDWPPRDG*
Ga0075431_1014450531	3300006847	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQPTAEPSSPQPVDWPPRAG*
Ga0075433_100434275	3300006852	Populus Rhizosphere	VTPAVFPGRRVDGSVWSPPDPLFLRTQAVKIPRKTIRYECVGGPRDGDVVLIQRTKHEVQLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG*
Ga0075434_1003623043	3300006871	Populus Rhizosphere	MDCSVRVPRDWSLSNPAVLRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQPTAEPSSPQPVDWPPRAG*
Ga0075429_1018360621	3300006880	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSGAKDQPTAEPPPPQPVDWPRRGG*
Ga0068865_1002784311	3300006881	Miscanthus Rhizosphere	PRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG*
Ga0079215_102179423	3300006894	Agricultural Soil	VVKIPRKTLRYECVGGPRDGDVVLIQRTKENVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTPSASDQPTTEPSPPQPVDWPSREG*
Ga0075424_10000026522	3300006904	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHEVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG*
Ga0079219_113785203	3300006954	Agricultural Soil	VGGPRDGDVVLIQRTKYQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0079218_100248022	3300007004	Agricultural Soil	VKIPRKTIRYECVGGPRDGDLVLIQRTKREVELDGALYQVRLWTKLDENGQRLLWKREALVWEGLLVHESNGDATAQPTPPQPVDCPMPDG*
Ga0111539_100742125	3300009094	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHEVQLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG*
Ga0075418_108070182	3300009100	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSGAKDQPTAEPPPPQPVDWPLQDG*
Ga0114129_107001941	3300009147	Populus Rhizosphere	PAVLRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRRDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQPTAEPSSPQPVDWPPRAG*
Ga0111538_127374532	3300009156	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQPT
Ga0075423_100040583	3300009162	Populus Rhizosphere	VKIPRKTIRYEFVGGPRDGDVVLIQRTKHEVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG*
Ga0105242_113150913	3300009176	Miscanthus Rhizosphere	SRPHPATFEPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0126307_100159336	3300009789	Serpentine Soil	VKFPRKTVRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSTVTDQPTTEPAPPQPVDWHPRDG*
Ga0126313_102583823	3300009840	Serpentine Soil	RDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSTVTDQPTIEPAPPQPVDWHPRDG*
Ga0126313_109343073	3300009840	Serpentine Soil	MPRKTSRYECVGGPRDGDVVLIQRTKQNVTLDGALYEVRFWAKMDEHGQRLLWKREALVWEGLLITDTGPEATEPAPPQPIDCPVRDG*
Ga0126305_100199815	3300010036	Serpentine Soil	VKFPRKTIRYECVGGPRDGDVVLIQRTKRNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSTVTDQPTTEPAPPQPVDWHPRDG*
Ga0126304_100270423	3300010037	Serpentine Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSDSKDQPTTEAPPPQPVDWPLRDG*
Ga0126304_101093792	3300010037	Serpentine Soil	VKFPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSTVTDQPTTEPAPPQPVDWHPRDG*
Ga0126312_113264392	3300010041	Serpentine Soil	MPRKTSRYECVGGPRDGDIVLIQRSKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIEDTGTDVIEPAPPQPIDWPGRDG*
Ga0126306_100468831	3300010166	Serpentine Soil	VKFPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSTVTDQPTTEPAPPQPVDRHPRDA*
Ga0105239_100287173	3300010375	Corn Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTRNQVRLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0150985_1027302442	3300012212	Avena Fatua Rhizosphere	SIQHHARPVKMPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLISDAGREATEPAPPQPIDCPVRDG*
Ga0150985_1036658321	3300012212	Avena Fatua Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKCQVRLDGALYEVRLWAKMDERGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPSRDG*
Ga0150985_1206397722	3300012212	Avena Fatua Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLITEAGPEAAEPAPPQPIDCPVRDG*
Ga0150985_1226821053	3300012212	Avena Fatua Rhizosphere	RPALALRPPVFTVKMPRKTSRYECVGGPRDGDLVLIQRSKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0157353_10215551	3300012496	Unplanted Soil	RQSSPTVGSLVVSESPNPVTSSRLRAPAVKIPRKTIRYECVDGPRDGDVVLIQRTKHQVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTSEPSPPQPVDWPPRDG*
Ga0157354_10672072	3300012517	Unplanted Soil	GDVVLIQRTKHQVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTSEPSPPQPVDWPPRDG*
Ga0157309_103372501	3300012895	Soil	RKTIRYECVGGPRDGDVVLIQRTKHHVELDGALYEVRLWAKMDEHGQRLLWKREALIWEGLLTSDAKDQPTTEAPPPQPVDWPLRDG*
Ga0164301_103641383	3300012960	Soil	VKIPRKTIRYECVGGPRDGDLVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLLKREALVWEGLLVSDSPHQPTTEPSPPQP
Ga0157371_115902341	3300013102	Corn Rhizosphere	IPHHARPVKMPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0157370_114943111	3300013104	Corn Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDDALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQP
Ga0157378_108967522	3300013297	Miscanthus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGPLTSDATDQPTAEPPPPQPVDWPLQDG*
Ga0157378_112985262	3300013297	Miscanthus Rhizosphere	MKIPRKTIRYECVGGPRDGDLVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG*
Ga0157375_110946803	3300013308	Miscanthus Rhizosphere	PLRLALALRPPVFTVKMPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG*
Ga0132258_101336966	3300015371	Arabidopsis Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLISDTGSDVIEPAPPQPIDWPGRDG*
Ga0132258_104011162	3300015371	Arabidopsis Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIKDTGAETTEPAPPQPIDCPVRDG*
Ga0132258_130046132	3300015371	Arabidopsis Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHSVQLDGALYQVRLWAKMDEHGQRLLWKREALVWEGLLVSDAPNQATTEPSPPQPVDWPPRDG*
Ga0132255_1008959081	3300015374	Arabidopsis Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTSEPSPPQPVDWPPLGG*
Ga0163161_103558571	3300017792	Switchgrass Rhizosphere	IPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG
Ga0190270_100956881	3300018469	Soil	MRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSAATDQPTSEPSPPQPVDWPPRDG
Ga0190274_100155251	3300018476	Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSEAKDQPTAEPPPPQPVDWPRRGG
Ga0222622_102016681	3300022756	Groundwater Sediment	MPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTSSDVIEPAPPQPIDWPGRDG
Ga0207656_107238931	3300025321	Corn Rhizosphere	MDCSVRVPRDWSLPNPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPP
Ga0207688_100756813	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDCSVRVPRDWSLPNPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG
Ga0207643_101027964	3300025908	Miscanthus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG
Ga0207705_101302363	3300025909	Corn Rhizosphere	PALALRPPVFTVKMPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG
Ga0207662_104480302	3300025918	Switchgrass Rhizosphere	MPRKTSRYECVGGPRDGDMVLSQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG
Ga0207649_100026632	3300025920	Corn Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG
Ga0207649_105858231	3300025920	Corn Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG
Ga0207681_103838183	3300025923	Switchgrass Rhizosphere	MKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLVSDSSDQPT
Ga0207659_112509452	3300025926	Miscanthus Rhizosphere	AFRLPLPVSRFPSPFVKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG
Ga0207644_112109041	3300025931	Switchgrass Rhizosphere	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLIKDTGAETTEPAPPQPIDCPVRDG
Ga0207690_107966881	3300025932	Corn Rhizosphere	MKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG
Ga0207669_112884801	3300025937	Miscanthus Rhizosphere	CPLRPALALRPPVFTVKMPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG
Ga0207679_100095367	3300025945	Corn Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG
Ga0207639_102141833	3300026041	Corn Rhizosphere	MDCSVRVPRDWSLPNPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTAEPSPPQPVDWPPRAG
Ga0207683_121916471	3300026121	Miscanthus Rhizosphere	PPVFTVKMPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG
Ga0209485_12819541	3300027691	Agricultural Soil	VVKIPRKTLRYECVGGPRDGDVVLIQRTKENVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTPSASDQPTTEPSPPQPVDWPSREG
Ga0209177_103585101	3300027775	Agricultural Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKQQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDAHDQPTSEPSPPQPVDWPQRDG
Ga0209486_107291882	3300027886	Agricultural Soil	SLDPRAPAPVVKIPRKTIRYECVGGPRDGDVVLIQRTKHNVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSNASDQPTTEPSPPQPVDWPPRDG
Ga0207428_101913962	3300027907	Populus Rhizosphere	VWSPPDPLFLRTQAVKIPRKTIRYECVGGPRDGDVVLIQRTKHEVQLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG
Ga0209382_100363243	3300027909	Populus Rhizosphere	VTPAVFPGRRVDGSVWSPPDPLFLRTQAVKIPRKTIRYECVGGPRDGDVVLIQRTKHEVRLDGALYLVRLWAKMDEHGQRLLWKREALVWEGLLVSDAADHATTEPSPPQPVDWPPRDG
Ga0209382_101993933	3300027909	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHNVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLTSNASDQPTAEPSPPQPVDWPPRDG
Ga0209382_105886003	3300027909	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRTKHEVRLDGALYQVRLWTKMDERGQRLLWKREALVWEGLLVPETSGDANVQPTPPQPVDSPTRGG
Ga0209382_118144151	3300027909	Populus Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRTKTEVELEGALYLVRLWAKMDERGQRLLWKREALVWEGLLVSDSDGAANVQPTPPQPVDWPSRDG
Ga0268266_100161823	3300028379	Switchgrass Rhizosphere	VKIPRKTIRYECVGGPRDGDLVLIQRLKQNVELDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTSNAPDQPTAEPSPPQPVDWPVREG
Ga0307283_102108981	3300028790	Soil	RVSVPRRPALALRPPVFTVKMPRKTSRYECVGGPRDGDMVLIQRSKQNVTLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLIADTGSDVIEPAPPQPIDWPGRDG
Ga0307408_1012648352	3300031548	Rhizosphere	LVKIPRKTIRYECVGGPRDGDVVLIQRSKRLAELDGALYHVRLWTKMDEHGQRLLWKREALVWEGLLVSDATDQPTSEPTPPQPVDWPIRDG
(restricted) Ga0255338_1000107152	3300031825	Sandy Soil	VKIPRKTIRYECVGGPRDGDIVLIQRTRQHVTLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLVSDQRTDQSTEPPPRQPVDCPAPEG
Ga0310907_106030892	3300031847	Soil	IRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG
Ga0307410_108310993	3300031852	Rhizosphere	LRSRIPSPASRLPSPVVKIPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDERGQRLLWKREALVWEGLLTSDSKDQPTTEAPPPQPVDWPLRDG
Ga0310893_100397221	3300031892	Soil	SPFVKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG
Ga0308175_1000055518	3300031938	Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKYQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSSDQPTVEPSPPQPVDWPPRAG
Ga0308175_1005740773	3300031938	Soil	VKIPRKTIRYECVGGPRDGDVVLIQRTKHQVRLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDAHDQPTSEPSPPQPVDWPPRDG
Ga0308174_102207283	3300031939	Soil	YECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDEHGQRLLWKREALVWEGLLISDAGREATEPAPPQPIDCPVRDG
Ga0310884_103136961	3300031944	Soil	MDCSVRVPRDWSLPNPAALRPVKIPRKTIRYECVGGPRDGDVVLIQRTKNQVRLDGAFYEVRLWAKMDEHGQRLLWKREALVWEGLLVSDSPDQPTAEPSPSQPVDWPPRAG
Ga0307409_1003650873	3300031995	Rhizosphere	VVKIPRKTIRYECVGGPRDGDLVLIQRTKQNVRLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLTSAASDQPTTEPSPPQPVDWPSRDG
Ga0307416_1000409145	3300032002	Rhizosphere	VKIPRKTIRYECVGGPRDGDVVLIQRTKHNVELDGALYEVRLWAKMDERGQRLLWKREALVWEGLLTSDSKDQPTTEAPPPQPVDWPLRDG
Ga0310895_101440023	3300032122	Soil	RFPSPFVKIPRKTIRYECVGGPRDGDVVLILRTKHNVELDGALYEVRLWTKLDERGQRLLWKREALVWEGLLTSDATDQPTAEPPPPQPVDWPLQDG
Ga0310810_100068213	3300033412	Soil	MKIPRKTLRYECVGGPRDGDVVLIQRSKSHVRLDGALYEVRLWTKMDEHGQRLLWKREALVWEGLLVSDSPHQPTVEPTPPQPVDWPSRDG
Ga0310810_100085628	3300033412	Soil	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLITETGTEATEPAPPQPIDCPVRDG
Ga0310811_106837662	3300033475	Soil	MPRKTSRYECVGGPRDGDMVLIQRTKQNVTLDGALYEVRLWAKMDENGQRLLWKREALVWEGLLITETGTEATEPAPPQPID

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters