Metagenome / Metatranscriptome Family F065078

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065078
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	59 residues
Representative Sequence	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAGQRKPLE
Number of Associated Samples	98
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	25.78 %
% of genes from short scaffolds (< 2000 bps)	96.09 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.281 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.531 % of family members)
Environment Ontology (ENVO)	Unclassified (28.125 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.594 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.68% β-sheet: 0.00% Coil/Unstructured: 44.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.90048
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.89827
a.25.1.1: Ferritin	d1j30a_	1j30	0.86749
f.63.1.1: Claudin	d3jbre_	3jbr	0.86684
a.25.1.1: Ferritin	d1lkoa1	1lko	0.86145

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF07769	PsiF_repeat	3.91
PF09994	DUF2235	3.12
PF03928	HbpS-like	2.34
PF13577	SnoaL_4	2.34
PF01425	Amidase	2.34
PF13474	SnoaL_3	1.56
PF07045	DUF1330	1.56
PF03492	Methyltransf_7	1.56
PF00536	SAM_1	1.56
PF13193	AMP-binding_C	0.78
PF00171	Aldedh	0.78
PF00990	GGDEF	0.78
PF01381	HTH_3	0.78
PF00211	Guanylate_cyc	0.78
PF08388	GIIM	0.78
PF00892	EamA	0.78
PF07859	Abhydrolase_3	0.78
PF13410	GST_C_2	0.78
PF13458	Peripla_BP_6	0.78
PF13191	AAA_16	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	2.34
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.56
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.78
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.78
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.78
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.78
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
All Organisms	root	All Organisms	36.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
cellular organisms	root	All Organisms → cellular organisms	36.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.91 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.28 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.34 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.16 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.34 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.81 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.34 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	0.78 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.78 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.78 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.34 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.34 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.78 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.78 %
Fictibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Fictibacillus	0.78 %
Caballeronia glathei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia glathei	0.78 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.28 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	2.34 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.34 %
Fictibacillus enclensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Fictibacillus → Fictibacillus enclensis	0.78 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.78 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.78 %
Caballeronia glathei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia glathei	0.78 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10124365	Not Available	1035	Open in IMG/M
3300005332\|Ga0066388_100422461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1976	Open in IMG/M
3300005332\|Ga0066388_102466346	Not Available	944	Open in IMG/M
3300005439\|Ga0070711_101357158	Not Available	618	Open in IMG/M
3300005546\|Ga0070696_101548835	Not Available	568	Open in IMG/M
3300005547\|Ga0070693_101151914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300005764\|Ga0066903_100199309	All Organisms → cellular organisms → Bacteria	2991	Open in IMG/M
3300005764\|Ga0066903_100489208	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300005764\|Ga0066903_101798790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1170	Open in IMG/M
3300005764\|Ga0066903_104110645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	779	Open in IMG/M
3300006052\|Ga0075029_101282865	Not Available	513	Open in IMG/M
3300006057\|Ga0075026_100215250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia glathei	1017	Open in IMG/M
3300006057\|Ga0075026_100261053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	933	Open in IMG/M
3300006059\|Ga0075017_100159016	Not Available	1613	Open in IMG/M
3300006059\|Ga0075017_100980764	Not Available	658	Open in IMG/M
3300006086\|Ga0075019_10134733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1436	Open in IMG/M
3300006086\|Ga0075019_10638655	Not Available	669	Open in IMG/M
3300006086\|Ga0075019_11164587	Not Available	502	Open in IMG/M
3300006162\|Ga0075030_101539962	Not Available	520	Open in IMG/M
3300006172\|Ga0075018_10231773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	887	Open in IMG/M
3300006174\|Ga0075014_100073995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1528	Open in IMG/M
3300006174\|Ga0075014_100399981	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300006176\|Ga0070765_102240188	Not Available	509	Open in IMG/M
3300006852\|Ga0075433_11191709	Not Available	661	Open in IMG/M
3300006904\|Ga0075424_100990185	Not Available	896	Open in IMG/M
3300009101\|Ga0105247_10193990	Not Available	1361	Open in IMG/M
3300010046\|Ga0126384_10352293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1227	Open in IMG/M
3300010358\|Ga0126370_11183441	Not Available	710	Open in IMG/M
3300010361\|Ga0126378_11334634	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	811	Open in IMG/M
3300010366\|Ga0126379_10442875	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300010366\|Ga0126379_10528405	Not Available	1256	Open in IMG/M
3300010371\|Ga0134125_12081818	Not Available	617	Open in IMG/M
3300010373\|Ga0134128_10813547	Not Available	1035	Open in IMG/M
3300010375\|Ga0105239_12784716	Not Available	571	Open in IMG/M
3300010376\|Ga0126381_100611429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1551	Open in IMG/M
3300010376\|Ga0126381_101232304	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300010376\|Ga0126381_102760637	Not Available	701	Open in IMG/M
3300010376\|Ga0126381_103524226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	614	Open in IMG/M
3300010379\|Ga0136449_100680556	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300010398\|Ga0126383_10214166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1861	Open in IMG/M
3300010398\|Ga0126383_11382063	Not Available	794	Open in IMG/M
3300010403\|Ga0134123_11224162	Not Available	782	Open in IMG/M
3300011119\|Ga0105246_10454271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1077	Open in IMG/M
3300011120\|Ga0150983_13673034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2265	Open in IMG/M
3300012948\|Ga0126375_10300594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1114	Open in IMG/M
3300012955\|Ga0164298_10467766	Not Available	834	Open in IMG/M
3300012957\|Ga0164303_10796744	Not Available	649	Open in IMG/M
3300012960\|Ga0164301_10204302	Not Available	1262	Open in IMG/M
3300012984\|Ga0164309_10524165	Not Available	912	Open in IMG/M
3300012987\|Ga0164307_11305641	Not Available	607	Open in IMG/M
3300015371\|Ga0132258_11448657	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300016270\|Ga0182036_10257371	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300016270\|Ga0182036_11202951	Not Available	630	Open in IMG/M
3300016319\|Ga0182033_10346750	Not Available	1241	Open in IMG/M
3300016319\|Ga0182033_10657602	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300016341\|Ga0182035_10789303	Not Available	832	Open in IMG/M
3300016371\|Ga0182034_11505048	Not Available	590	Open in IMG/M
3300016387\|Ga0182040_11342448	Not Available	604	Open in IMG/M
3300016404\|Ga0182037_11102468	Not Available	695	Open in IMG/M
3300016422\|Ga0182039_11017536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300016422\|Ga0182039_11984407	Not Available	535	Open in IMG/M
3300016445\|Ga0182038_11935826	Not Available	533	Open in IMG/M
3300017822\|Ga0187802_10099997	Not Available	1091	Open in IMG/M
3300017822\|Ga0187802_10138002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	928	Open in IMG/M
3300017823\|Ga0187818_10195135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	884	Open in IMG/M
3300017924\|Ga0187820_1335089	Not Available	503	Open in IMG/M
3300017955\|Ga0187817_10118880	Not Available	1671	Open in IMG/M
3300017955\|Ga0187817_10226914	Not Available	1190	Open in IMG/M
3300017955\|Ga0187817_10703084	Not Available	645	Open in IMG/M
3300017955\|Ga0187817_11041663	Not Available	525	Open in IMG/M
3300017970\|Ga0187783_11295531	Not Available	525	Open in IMG/M
3300017974\|Ga0187777_10206469	Not Available	1325	Open in IMG/M
3300017995\|Ga0187816_10205539	Not Available	857	Open in IMG/M
3300017995\|Ga0187816_10424939	Not Available	593	Open in IMG/M
3300018006\|Ga0187804_10232413	Not Available	793	Open in IMG/M
3300018058\|Ga0187766_10347839	Not Available	970	Open in IMG/M
3300018062\|Ga0187784_11010879	Not Available	661	Open in IMG/M
3300020581\|Ga0210399_11470582	Not Available	530	Open in IMG/M
3300021088\|Ga0210404_10877896	Not Available	513	Open in IMG/M
3300021168\|Ga0210406_11183576	Not Available	557	Open in IMG/M
3300021178\|Ga0210408_10967688	Not Available	660	Open in IMG/M
3300021181\|Ga0210388_10860590	Not Available	783	Open in IMG/M
3300021401\|Ga0210393_11343711	Not Available	572	Open in IMG/M
3300021403\|Ga0210397_10174336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1521	Open in IMG/M
3300021406\|Ga0210386_11510060	Not Available	560	Open in IMG/M
3300021432\|Ga0210384_10775477	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300021474\|Ga0210390_10115093	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300021478\|Ga0210402_11437400	Not Available	617	Open in IMG/M
3300021478\|Ga0210402_11481685	Not Available	606	Open in IMG/M
3300021560\|Ga0126371_11394955	Not Available	832	Open in IMG/M
3300021560\|Ga0126371_12279063	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300022522\|Ga0242659_1132138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Fictibacillus → Fictibacillus enclensis	518	Open in IMG/M
3300025900\|Ga0207710_10286240	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300027889\|Ga0209380_10434205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	769	Open in IMG/M
3300027894\|Ga0209068_10298578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	904	Open in IMG/M
3300027910\|Ga0209583_10059419	Not Available	1371	Open in IMG/M
3300027911\|Ga0209698_11353153	Not Available	520	Open in IMG/M
3300027915\|Ga0209069_10434350	Not Available	726	Open in IMG/M
3300031573\|Ga0310915_10231108	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300031679\|Ga0318561_10553202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	634	Open in IMG/M
3300031744\|Ga0306918_10198872	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300031747\|Ga0318502_10557039	Not Available	689	Open in IMG/M
3300031754\|Ga0307475_11039003	Not Available	643	Open in IMG/M
3300031754\|Ga0307475_11322677	Not Available	558	Open in IMG/M
3300031768\|Ga0318509_10224194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1048	Open in IMG/M
3300031879\|Ga0306919_10453464	Not Available	987	Open in IMG/M
3300031890\|Ga0306925_10232127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1990	Open in IMG/M
3300031890\|Ga0306925_10321999	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300031890\|Ga0306925_10347235	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300031890\|Ga0306925_11841466	Not Available	578	Open in IMG/M
3300031910\|Ga0306923_11007483	Not Available	904	Open in IMG/M
3300031910\|Ga0306923_11806836	Not Available	628	Open in IMG/M
3300031912\|Ga0306921_12157326	Not Available	589	Open in IMG/M
3300031942\|Ga0310916_10952020	Not Available	718	Open in IMG/M
3300031945\|Ga0310913_10305760	Not Available	1122	Open in IMG/M
3300031946\|Ga0310910_10663259	Not Available	826	Open in IMG/M
3300031947\|Ga0310909_10598795	Not Available	921	Open in IMG/M
3300031947\|Ga0310909_10882863	Not Available	735	Open in IMG/M
3300031954\|Ga0306926_12649227	Not Available	546	Open in IMG/M
3300031962\|Ga0307479_12107619	Not Available	512	Open in IMG/M
3300032001\|Ga0306922_11356825	Not Available	717	Open in IMG/M
3300032041\|Ga0318549_10521090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	534	Open in IMG/M
3300032059\|Ga0318533_10339768	Not Available	1093	Open in IMG/M
3300032076\|Ga0306924_12152217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	570	Open in IMG/M
3300032180\|Ga0307471_101238896	Not Available	910	Open in IMG/M
3300032261\|Ga0306920_100426313	Not Available	1972	Open in IMG/M
3300032515\|Ga0348332_12443349	All Organisms → cellular organisms → Bacteria → Proteobacteria	2227	Open in IMG/M
3300033289\|Ga0310914_11469835	Not Available	585	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.53%
Host-Associated	Host-Associated	5.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.44%
Aquatic	Environmental → Aquatic	21.09%
Plants	Host-Associated → Plants	5.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.66%
Sediment	Environmental → Aquatic → Sediment	12.50%
Freshwater	Environmental → Aquatic → Freshwater	8.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.69%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	10.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.12%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.34%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.12%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.12%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.78%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101243652	3300003505	Forest Soil	MKSRVETCRKKADECERAAARVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV*
Ga0066388_1004224612	3300005332	Tropical Forest Soil	MRRRADICRQKADECERAAMRVTDPQVQASYRQMSRRWHEIAERQQIIDAALAERHQPQA
Ga0066388_1024663461	3300005332	Tropical Forest Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGRRKPLE
Ga0070711_1013571582	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKSRVETCRKKADECERAAARVGDPQIQASYREMSRQWHEMAERQFAIDEAL
Ga0070696_1015488351	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKSRAETFQKKADECERAAARVADPHVQASYRRMSRQWHEMAERQRVIDEALADVP
Ga0070693_1011519141	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKSRAETLQKKADECERAAARVADPHVQASYRRMSRQWHEMAERQRVIDEALADVPKTIGIESSAMP*
Ga0066903_1001993094	3300005764	Tropical Forest Soil	MISRADICRQKADECERAAARVADPQVQTSYRQMSRQWHEMAERQQAIDEALAYLRKPPE
Ga0066903_1004892083	3300005764	Tropical Forest Soil	MGHTVPETIMKSRAETCRDKADECERAAARVGDPQIQASYREMSRQWHEMAERQLVIDQALSGVGTI*
Ga0066903_1017987902	3300005764	Tropical Forest Soil	MGSRIDMCRQRADECERAAARVNDPHIQGKYREMSRQWHEMAKRQQAINEALAGIGTV*
Ga0066903_1041106452	3300005764	Tropical Forest Soil	MRSRADICRQKADECERGAMRVVDPQVQASYRQMSRKWHEIAERQRAIDEALAGQRKPLE
Ga0075029_1012828651	3300006052	Watersheds	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEA
Ga0075026_1002152503	3300006057	Watersheds	MRRRADICRQKAKECERAAMRVADPQVQFTYRQMSRQWREMAERQQAKD
Ga0075026_1002610531	3300006057	Watersheds	MRSRADVYRRKADECERAAARVANPQVQASYRQMSRQWHEMAERQQTIEEALAERRKPVE
Ga0075017_1001590161	3300006059	Watersheds	MRRRADICRQKAKECERAAMRVADPQVQFTYRQMSRQWREMAERQQAKDEALANAHKQLE
Ga0075017_1009807642	3300006059	Watersheds	MRNRADIYRQKAHECERAANRVPDPQVQASYRQMSRQWNEMAQRQQTID
Ga0075019_101347333	3300006086	Watersheds	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAELLKPLE
Ga0075019_106386552	3300006086	Watersheds	MRSRADIYRRKADECERATARVANPQVQASYRQMSRQWREMAERQQTIDEALALRRKPVE
Ga0075019_111645872	3300006086	Watersheds	MINRAEVCRHKADECERAAARVTDPDIQTRYRKMSRQWHEMANRQQEIDEALAAIGTV*
Ga0075030_1015399622	3300006162	Watersheds	MKSRAETCRKKAAECERAAARVGDPQIQASYREMSRQWHEMAERQRAIEDALVDVSMGSDGTC*
Ga0075018_102317732	3300006172	Watersheds	MAHPRRSSTVKSREETYRKKADECERAAARVENSQIQVGYREMSRRWHEMAERQLAIDEALTGVGTV*
Ga0075014_1000739951	3300006174	Watersheds	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAEL
Ga0075014_1003999811	3300006174	Watersheds	MTNRADIYRQKAHEYERAATRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAELL
Ga0070765_1022401881	3300006176	Soil	MRSRADIYRQKADECERAAARVANPQVQASYRQMSRQWNEMAQRQQTIDEALAEL
Ga0075433_111917091	3300006852	Populus Rhizosphere	MISRAETLQKKADECERAAARVADPHVQASYRRMSRQWHEMAERQRVIDE
Ga0075424_1009901851	3300006904	Populus Rhizosphere	SRAETLQKKADECERAAARVADPHVQASYRRMSRQWHEMAERQRVIDEALADVPKTIGIESSAMP*
Ga0105247_101939903	3300009101	Switchgrass Rhizosphere	MKSRAETLQEKADECERAAERVADPHVEASYRRMSRQWHKMAERQRVIDEALADVPKQLE
Ga0126384_103522932	3300010046	Tropical Forest Soil	MRSRADICRQKADECERAAMRVVDPQVQASYRQMSRKWHEIAERQRAIDEALAGQRKPLE
Ga0126370_111834411	3300010358	Tropical Forest Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQRRPLE
Ga0126378_113346341	3300010361	Tropical Forest Soil	SRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAERRKPLE*
Ga0126379_104428752	3300010366	Tropical Forest Soil	MMSRADICRQKADECERAAARVADPQVQTSYRQMSRQWHEMAERQQAIDEALAYLRKPPE
Ga0126379_105284051	3300010366	Tropical Forest Soil	MGSRIDMCRQRADECERAAARVNDPHIQGKYREMSRQWHEMAIRQQAINEALAGIGTV*
Ga0134125_120818182	3300010371	Terrestrial Soil	RSLQRLGGRMKSRAETRRKKADDCERAATRVTDPQTQASYRQMSRQWHEMADRQRAIEDALVNAGRPLD*
Ga0134128_108135471	3300010373	Terrestrial Soil	MKSRAETRRKKADDCERAATRVTDPQTQASYRQMSRQWHEMADRQRAIEDALVNAGRPLD
Ga0105239_127847162	3300010375	Corn Rhizosphere	MKSRAETLQKKADECERGAARVADPHVQASYRRMSRQWHKMAERQRVIDEALADVPKQLE
Ga0126381_1006114292	3300010376	Tropical Forest Soil	MMSRADICRQKADECQRAAARVSDPQVQTSYRQMSRQWHEMAERQQAIDEALAYLCKPPE
Ga0126381_1012323042	3300010376	Tropical Forest Soil	VRSRADIWRQKADECERAATRVADPQVQASYRQMSRKWHQIAEQQRAIDEALARPRKPLEWD*
Ga0126381_1027606371	3300010376	Tropical Forest Soil	MKSRAKTCREKADECERAAARVGGPQIQASYREMSRQWHEMAERQLVIDQALSGVGTI*
Ga0126381_1035242261	3300010376	Tropical Forest Soil	KADECERAVTRVADPQVQASYRQMSRKWHEIAERQWAIDEALAGQRKPLE*
Ga0136449_1006805562	3300010379	Peatlands Soil	MSSRANLYRQKAIECENAADRVADPQVKASYRQMSRKWRDMADRQHAIDEALKRIRERAR
Ga0126383_102141663	3300010398	Tropical Forest Soil	MMSRADICRQKADECERAAARVADPQVQTSYRQMSRQWHEMAERQQAIDEALAYLCKPPE
Ga0126383_113820632	3300010398	Tropical Forest Soil	MKSRADVCRQKADECEGAAARVTDPHIQARYREMSRQWHAIANRQQAIDEALAGIGTV*
Ga0134123_112241621	3300010403	Terrestrial Soil	MKSRAETLQKKADECERAAARVADPHVQASYRRMSRQWHKMAERQRVIDEALADVPKQLE
Ga0105246_104542711	3300011119	Miscanthus Rhizosphere	MKSRAETLQEKADECERAAERVADPHVEASYRRMSRQWHKMAERQRVIDEALADVPKQL
Ga0150983_136730342	3300011120	Forest Soil	MRSRADICRQKADECERAATRVADPQVQATYRQMSRKWHEIAERQRAIDDALAALPRPLE
Ga0126375_103005943	3300012948	Tropical Forest Soil	MMSRADICRQKADECERAAARVADPQVQTSYRQMSRQWHEMAERQQAIDE
Ga0164298_104677662	3300012955	Soil	MKSRVETCRKKADECERAAARVVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV*
Ga0164303_107967441	3300012957	Soil	MKSRVETCRKKAGECERAAARVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV*
Ga0164301_102043022	3300012960	Soil	MKSRAETCRKKADECERAAARVGDLQIQASYREMSRQWHEMAERQFAIDEALTGVGTV*
Ga0164309_105241652	3300012984	Soil	MKSRVETCRKKADECERAAARVGDPQIQASYREMSRQWHEIAERQFAIDEALTDVGTV*
Ga0164307_113056411	3300012987	Soil	MKSRAETCRKKAAECERAAARVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV*
Ga0132258_114486572	3300015371	Arabidopsis Rhizosphere	MKSRAETCREKADECERAAARVGDPQIQASYREMSRQWHEMAERQLVIDQALSGVGTI*
Ga0182036_102573711	3300016270	Soil	MMSRADICRRKADECERAAARVADPKVQASYRKMSRQWHEMAERQQAIDEALAHRRKPPE
Ga0182036_112029512	3300016270	Soil	MRSRADICRQKADECERAARRVADPQVQASYRQMSRRWHEIAERQQIIDEALAERHKPQA
Ga0182033_103467503	3300016319	Soil	TVKSREEIHRKKADECERAAARVDNSQTQVSYREMSRPWHEMAERQLAIDEALTGVGTV
Ga0182033_106576021	3300016319	Soil	MRSRADICRQKGDECERAAPRVADPQVQASYRQMSRKWHQIAEQQRAIDEALAGRRKPLEWTTWTDSAQDP
Ga0182035_107893032	3300016341	Soil	MAHPRRSSTVKSREEIHRKKADECERAAARVDDSQTQVSYREMSRPWHEMAERQLAIDEALTGVGTV
Ga0182034_115050482	3300016371	Soil	MLSRANICRQKADECERAAARVADPKVQASYRQMSRQWHEMAERQQAIDEALAHRRKPPE
Ga0182040_113424481	3300016387	Soil	MRSRADICRQKADECECAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQRKPLE
Ga0182037_111024682	3300016404	Soil	MRRRADICRQKADECERAARRVADPQVQASYRQMSRRWHEIAERQQIIDAALAERHKPQA
Ga0182039_110175362	3300016422	Soil	MRSRADICRQKADECECAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQRRPLE
Ga0182039_119844071	3300016422	Soil	MRRRADICRQKADECERAARRVADPQVQASYRQMSRRWHEIAERQQMIDEALAERQML
Ga0182038_119358261	3300016445	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQR
Ga0187802_100999971	3300017822	Freshwater Sediment	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAELLKPLK
Ga0187802_101380021	3300017822	Freshwater Sediment	MRSRADIYRRKADECERAAARVANPQVQASYRQMSRQWREMAERQQTIDEALAERRKPVE
Ga0187818_101951352	3300017823	Freshwater Sediment	MGSRVESCRQRADECERAAARVADPQVQASYRQMSRQWHEIADRQRAIDETLAEALRKGRHPPP
Ga0187820_13350891	3300017924	Freshwater Sediment	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTID
Ga0187817_101188802	3300017955	Freshwater Sediment	MRSRADVYRRKADECERAAARVANPQVQASYRQMSRQWHEMAERQQTIDEALAERRKPVE
Ga0187817_102269141	3300017955	Freshwater Sediment	MRRRADICRQKAKECERAAMRVADPQVQFTYRQMSRQWREMAERQQAKDEALANAHKPLE
Ga0187817_107030841	3300017955	Freshwater Sediment	MRDRADIYRQKAHECERAANRVADPQVQASYRQMSRQWDEMAQRQQTIDEALAELLKPLK
Ga0187817_110416631	3300017955	Freshwater Sediment	MRNRADIYRQKAHECECAANRVADPQVQDSYREMCRQWNEMAQRQQMIDEALAELLKPLK
Ga0187783_112955311	3300017970	Tropical Peatland	VRNRAEMCRQRADECERAATRVADPRVQASYREMSHQWRQMAERQLAIDEALA
Ga0187777_102064692	3300017974	Tropical Peatland	MRRRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAEQQRAIDEALAGRHKSPEWATWTDSAQDP
Ga0187816_102055391	3300017995	Freshwater Sediment	MRNRAAIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAELLKPLK
Ga0187816_104249391	3300017995	Freshwater Sediment	MGNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWDEMAQRQQTIDEALAELLKPLK
Ga0187804_102324131	3300018006	Freshwater Sediment	MRNRADIYRQKAHECERAANRVPDPQVQASYRQMSRQWNEMAQRQQTIDEALAELLKPLK
Ga0187766_103478391	3300018058	Tropical Peatland	MRSRADICRQKADECERAAARVADPQVQASYRQMSRKWHQIAGQQRSIDKALAGRRKSLEWTTWTDSAQEP
Ga0187784_110108791	3300018062	Tropical Peatland	MKSRAEIFRMSADACERAAARVADPQIQASYRRMSRQWHEMAERQQVIENALGNAGKPLE
Ga0210399_114705821	3300020581	Soil	MKSRAETCRKKAAECERAAARVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV
Ga0210404_108778961	3300021088	Soil	RRSSTMKSRVETCRKKADECERAAARVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV
Ga0210406_111835761	3300021168	Soil	MKSRVETCRKKADECERAAARVVGDPQIQASYREMSRQWHEMAERQFAIDEALTGVGTV
Ga0210408_109676881	3300021178	Soil	MRSRADICRQKADECERAAARVTDPQVQASYRRMSRQWHEMAERQQAIDEALADRRKPTE
Ga0210388_108605901	3300021181	Soil	VKSREETYRKKADECERAAARVDNSQSQVRYREMSRRWHEMAERQLTIDEALTGVG
Ga0210393_113437112	3300021401	Soil	MAHPRRSSTVKSREETYRKKADECERAAARVDNSQSQVRYREMSRRWHEMAERQLAIDEALTGVGTV
Ga0210397_101743362	3300021403	Soil	MKSRAETCRKKAAECERAAARVGDPQIQASYREMSRQWHEMAERQRGIEDALVDVSMGSDGTC
Ga0210386_115100601	3300021406	Soil	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRRWNEMAQRQQTIDEALAELLKPLK
Ga0210384_107754772	3300021432	Soil	MKSRVETCRKKADECERAAARVGDPQIQASYREMSRQWYEMAERQFAIDEALTGVGTV
Ga0210390_101150934	3300021474	Soil	MAHPRRSSTVKSREETYRKKADECERAAARVNNSQSQVRYREMSRRWHEMAERQLTIDEALTGVGTV
Ga0210402_114374001	3300021478	Soil	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAERALHSSHRVKTSSC
Ga0210402_114816851	3300021478	Soil	MKSRAETCRKKAAECERAAARVGDPQIQASYREMSRQWHEMAEWQRAIEDALVDVS
Ga0126371_113949551	3300021560	Tropical Forest Soil	MGSRIDMCRQRADECERGAARVNDPHIQGKYREMSRQWHEMAKRQQAINEALAGIGTV
Ga0126371_122790632	3300021560	Tropical Forest Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHQIAEQQRAIDEALARRRKPAGMGNLD
Ga0242659_11321381	3300022522	Soil	EETYRKKADECERAAARVNNSRSQVRYREMSRRWHEMAERQLTIDEALTGVGTV
Ga0207710_102862401	3300025900	Switchgrass Rhizosphere	ADECERAAERVADPHVEASYRRMSRQWHKMAERQRVIDEALADVPKQLE
Ga0209380_104342052	3300027889	Soil	MKSRVETCRKKADECERAAARVGDPQIQASYREMSRQWREMAEWQRAIKDALVDVSMGSDGTC
Ga0209068_102985782	3300027894	Watersheds	MRSRADVYRRKADECERAAARVANPQVQASYRQMSRQWREMAERQQTIDEALALRRKPVE
Ga0209583_100594191	3300027910	Watersheds	MRSRADVYRRKADECERAAARVANPQVQASYRQMSRQWHKMAERQQTIDEALAERRKPVE
Ga0209698_113531531	3300027911	Watersheds	MKSRAETCRKKAAECERAAARVGDPQIQASYREMSRQWHEMAERQRAIEDALVDVSMGSDGTC
Ga0209069_104343501	3300027915	Watersheds	MTNRADIYRQKAHEYERAATRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAELLKPLK
Ga0310915_102311082	3300031573	Soil	MRSRADICRQKADECECAATRVADPQVQASYRQMSRKWHEIADRQRAIDKALAGQRKPLE
Ga0318561_105532022	3300031679	Soil	MGSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAGQRKPLE
Ga0306918_101988721	3300031744	Soil	MMSRADICRRKADECERAAARVADPKVQASYRQMSRQWHEMAERQQAIDEALAHRRKPPE
Ga0318502_105570392	3300031747	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQCKPLE
Ga0307475_110390032	3300031754	Hardwood Forest Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAALPRPLQ
Ga0307475_113226771	3300031754	Hardwood Forest Soil	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEAL
Ga0318509_102241942	3300031768	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAGQRKPLE
Ga0306919_104534641	3300031879	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAGQRRPLE
Ga0306925_102321273	3300031890	Soil	MRSRADICRQKADECGCAATIVTDPQVQASYRQMSRKWHEIADRQRAIDEALAGQRKPLE
Ga0306925_103219992	3300031890	Soil	MMSRANICRQKADECERAAARVADPQVQTSYRHMSRQWHEMADRQQAIDEALAHLRKPPE
Ga0306925_103472353	3300031890	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHQIAEQQRAIDEALAGRRNPLEWATWTDSAQEP
Ga0306925_118414661	3300031890	Soil	MAHPRRSSTVKSREEIHRKKADECERAAARVDNSQTQVSYREMSRPWHEMAE
Ga0306923_110074832	3300031910	Soil	MRGICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQRKPLE
Ga0306923_118068361	3300031910	Soil	MAERGSIMMSRADICRRKADECERAAARVADPKVQASYRQMSRQWHEMAERQQAIDEALAHRRKPPE
Ga0306921_121573261	3300031912	Soil	MRRRADICRQKADECERAAMRVADPQVQASYRQMSRRWHEIAERQQMIDEALAEQHKPHA
Ga0310916_109520201	3300031942	Soil	MAHPRRSSTVKSREEIHRKKADECERAAARVDNSQTQVSYREMSRPWHEMAERQLAIDEALTGVGTV
Ga0310913_103057602	3300031945	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQRKPLE
Ga0310910_106632591	3300031946	Soil	IMRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAGQRKPL
Ga0310909_105987952	3300031947	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIAERQRAIDEALAG
Ga0310909_108828632	3300031947	Soil	MMSRADICRRKADECERAAARVADPKVQASYRQMSRQWHEMAERQRAIDEALAHRRKPPE
Ga0306926_126492271	3300031954	Soil	MMSRANICRQKADECERASARVADPQVQASYRHMSRQWHEMADRQQAIDEALAHLRKPPE
Ga0307479_121076191	3300031962	Hardwood Forest Soil	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQTIDEALAELL
Ga0306922_113568251	3300032001	Soil	MRSRADICRQKADECERAAMRVADPQVQASYRQMSRRWHEIAERQQIIDEALAERHKPQA
Ga0318549_105210902	3300032041	Soil	MRSRADICRQKADECERAATRVADPQVQASYRQMSRKWHEIADRQRAIDEALAGQCKP
Ga0318533_103397682	3300032059	Soil	MMSRADICRRKADECERAAARVADPQVQASYRHMSRQWHEMADRQQAIDEALAHLRKPPE
Ga0306924_121522172	3300032076	Soil	RKKADECERAAVRADNSQTQVSYREMSRLWHEMAERQLAIDEALTGVGTV
Ga0307471_1012388961	3300032180	Hardwood Forest Soil	MRNRADIYRQKAHECERAANRVADPQVQASYRQMSRQWNEMAQRQQAIDEALAELLKPEALAELLKPLK
Ga0306920_1004263132	3300032261	Soil	MMSRANICRQKADECERAAARVADPQVQASYRHMSRQWHEMADRQQAIDEALAHLRKPPE
Ga0348332_124433492	3300032515	Plant Litter	MRSRADICRQKADECECAATRVADPHVQASYRQMSRQWHEMAERQQTIDEALAN
Ga0310914_114698351	3300033289	Soil	MRRRADICRQKADECERAAMRVADPQVQGSYRQMSRRWHEIAERQQIIDAALAERHKPQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065078

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences