Metagenome Family F065038

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065038
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	45 residues
Representative Sequence	EEVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLTGGKQQ
Number of Associated Samples	105
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.56 %
% of genes near scaffold ends (potentially truncated)	96.09 %
% of genes from short scaffolds (< 2000 bps)	90.62 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.875 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (21.094 % of family members)
Environment Ontology (ENVO)	Unclassified (32.812 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.312 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.17% β-sheet: 0.00% Coil/Unstructured: 45.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF11843	DUF3363	4.69
PF03432	Relaxase	3.91
PF05973	Gp49	1.56
PF03631	Virul_fac_BrkB	1.56
PF13744	HTH_37	1.56
PF01656	CbiA	0.78
PF05593	RHS_repeat	0.78
PF02534	T4SS-DNA_transf	0.78
PF04430	DUF498	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG3843	Type IV secretory pathway, VirD2 component (relaxase)	Intracellular trafficking, secretion, and vesicular transport [U]	3.91
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.56
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	1.56
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	1.56
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.78
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.78
COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	Intracellular trafficking, secretion, and vesicular transport [U]	0.78
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.88 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.88 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.88 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	68.75 %
Unclassified	root	N/A	3.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.34 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	57.81 %
Unclassified	root	N/A	3.12 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.34 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.81 %
Unclassified	root	N/A	3.12 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.34 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.81 %
Unclassified	root	N/A	3.12 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.34 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.81 %
Unclassified	root	N/A	3.12 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.56 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.78 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.81 %
Unclassified	root	N/A	3.12 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1.56 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.78 %
Paraburkholderia franconis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia franconis	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000729\|JGI12371J11900_1014660	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300002909\|JGI25388J43891_1017718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1272	Open in IMG/M
3300005167\|Ga0066672_10726747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300005179\|Ga0066684_10104292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1742	Open in IMG/M
3300005187\|Ga0066675_10209407	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300005332\|Ga0066388_104738279	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005332\|Ga0066388_105724722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300005451\|Ga0066681_10731756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300005540\|Ga0066697_10070169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2009	Open in IMG/M
3300005540\|Ga0066697_10179935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1255	Open in IMG/M
3300005552\|Ga0066701_10283173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1027	Open in IMG/M
3300005555\|Ga0066692_10557937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300005555\|Ga0066692_10807351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300005556\|Ga0066707_10791420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300005557\|Ga0066704_10358497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	976	Open in IMG/M
3300005557\|Ga0066704_11001831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300005566\|Ga0066693_10447732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005568\|Ga0066703_10312056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	950	Open in IMG/M
3300005764\|Ga0066903_101515954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300006028\|Ga0070717_10935914	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300006173\|Ga0070716_100642872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300006796\|Ga0066665_11476975	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300006797\|Ga0066659_10903027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300006800\|Ga0066660_11075790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300006806\|Ga0079220_10376199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	916	Open in IMG/M
3300006806\|Ga0079220_10534441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300006903\|Ga0075426_11155203	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300007265\|Ga0099794_10078564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1625	Open in IMG/M
3300009012\|Ga0066710_101148312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300009012\|Ga0066710_101575845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1008	Open in IMG/M
3300009137\|Ga0066709_100535844	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300010303\|Ga0134082_10044892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1687	Open in IMG/M
3300010321\|Ga0134067_10270074	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300010333\|Ga0134080_10033317	All Organisms → cellular organisms → Bacteria → Acidobacteria	1972	Open in IMG/M
3300010333\|Ga0134080_10550422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300010358\|Ga0126370_10785477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300010359\|Ga0126376_12555286	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300010361\|Ga0126378_11665246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300010376\|Ga0126381_102144243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300010376\|Ga0126381_102206227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia franconis	792	Open in IMG/M
3300011271\|Ga0137393_10903949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300012199\|Ga0137383_10196941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1477	Open in IMG/M
3300012203\|Ga0137399_10047225	All Organisms → cellular organisms → Bacteria	3102	Open in IMG/M
3300012205\|Ga0137362_11457668	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012356\|Ga0137371_10036399	All Organisms → cellular organisms → Bacteria → Acidobacteria	3801	Open in IMG/M
3300012363\|Ga0137390_10754920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300012683\|Ga0137398_11259038	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300012923\|Ga0137359_10573410	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300012927\|Ga0137416_10333377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300012971\|Ga0126369_11507321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300014157\|Ga0134078_10140010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	943	Open in IMG/M
3300015242\|Ga0137412_11292627	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300015356\|Ga0134073_10008179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2278	Open in IMG/M
3300016294\|Ga0182041_11668926	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300016371\|Ga0182034_10225881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1463	Open in IMG/M
3300016387\|Ga0182040_10118013	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300016387\|Ga0182040_11870061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300016404\|Ga0182037_10192154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1576	Open in IMG/M
3300016404\|Ga0182037_11108207	Not Available	693	Open in IMG/M
3300016404\|Ga0182037_11471645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	603	Open in IMG/M
3300016422\|Ga0182039_10320330	All Organisms → cellular organisms → Bacteria → Acidobacteria	1291	Open in IMG/M
3300016422\|Ga0182039_11272462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300017961\|Ga0187778_10014202	All Organisms → cellular organisms → Bacteria	4927	Open in IMG/M
3300018085\|Ga0187772_11361103	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300018090\|Ga0187770_10205119	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300018433\|Ga0066667_10884482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300018482\|Ga0066669_11321460	Not Available	653	Open in IMG/M
3300019360\|Ga0187894_10183726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300020581\|Ga0210399_10465061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1053	Open in IMG/M
3300021170\|Ga0210400_10652106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300021178\|Ga0210408_10242197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1436	Open in IMG/M
3300021560\|Ga0126371_11323264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300026277\|Ga0209350_1012614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2692	Open in IMG/M
3300026295\|Ga0209234_1167393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300026305\|Ga0209688_1107044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300026308\|Ga0209265_1162896	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300026322\|Ga0209687_1048124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384	Open in IMG/M
3300026323\|Ga0209472_1197522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300026333\|Ga0209158_1156714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300026342\|Ga0209057_1173525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300026343\|Ga0209159_1106596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1209	Open in IMG/M
3300026528\|Ga0209378_1041981	All Organisms → cellular organisms → Bacteria → Acidobacteria	2298	Open in IMG/M
3300026530\|Ga0209807_1219188	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300026551\|Ga0209648_10758012	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300026552\|Ga0209577_10661908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300026895\|Ga0207758_1015519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	747	Open in IMG/M
3300026979\|Ga0207817_1024239	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300026982\|Ga0207854_1013522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300027039\|Ga0207855_1047591	Not Available	579	Open in IMG/M
3300027903\|Ga0209488_10479282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300028536\|Ga0137415_10191943	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1864	Open in IMG/M
3300028536\|Ga0137415_10269038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1510	Open in IMG/M
3300031545\|Ga0318541_10752172	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031546\|Ga0318538_10751774	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031572\|Ga0318515_10682667	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031715\|Ga0307476_11311313	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031719\|Ga0306917_10487674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300031744\|Ga0306918_11245818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300031770\|Ga0318521_10285614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	969	Open in IMG/M
3300031820\|Ga0307473_10603816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300031833\|Ga0310917_10986354	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031845\|Ga0318511_10294444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300031890\|Ga0306925_11703502	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031890\|Ga0306925_11852629	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031910\|Ga0306923_10030877	All Organisms → cellular organisms → Bacteria	5780	Open in IMG/M
3300031910\|Ga0306923_11931324	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300031912\|Ga0306921_10071834	All Organisms → cellular organisms → Bacteria	3973	Open in IMG/M
3300031912\|Ga0306921_10630542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1237	Open in IMG/M
3300031941\|Ga0310912_10250330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1363	Open in IMG/M
3300031941\|Ga0310912_10394306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300031941\|Ga0310912_10920484	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300031946\|Ga0310910_10947207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300031947\|Ga0310909_11422482	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300031954\|Ga0306926_10291271	All Organisms → cellular organisms → Bacteria → Acidobacteria	2021	Open in IMG/M
3300032001\|Ga0306922_10462430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1355	Open in IMG/M
3300032001\|Ga0306922_10543596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1235	Open in IMG/M
3300032001\|Ga0306922_11229435	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300032001\|Ga0306922_11551726	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300032035\|Ga0310911_10675844	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300032039\|Ga0318559_10198983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300032051\|Ga0318532_10269434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300032059\|Ga0318533_10967183	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300032076\|Ga0306924_11349674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300032180\|Ga0307471_102867355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300032261\|Ga0306920_100110533	All Organisms → cellular organisms → Bacteria → Acidobacteria	4075	Open in IMG/M
3300032261\|Ga0306920_103162487	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300033289\|Ga0310914_10067971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2989	Open in IMG/M
3300033289\|Ga0310914_10710041	Not Available	901	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.22%
Host-Associated	Host-Associated	0.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.22%
Plants	Host-Associated → Plants	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.44%
Cave	Environmental → Terrestrial → Cave	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.28%
Loam	Environmental → Terrestrial → Soil → Loam	7.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.34%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	28.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.34%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.56%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.47%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.34%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.56%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000729	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300026982	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 7 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12371J11900_10146602	3300000729	Tropical Forest Soil	EPPEELLPSARAHARLRYAKILRLAGQEVATRNKATLEEVLNGGKES*
JGI25388J43891_10177183	3300002909	Grasslands Soil	MAPEEVLPAARARAKLRYAKILRLAAEEVATRNEATLEEVLTAGKQQ*
Ga0066672_107267471	3300005167	Soil	EPPEEVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLTSGNP*
Ga0066684_101042923	3300005179	Soil	EEVLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQE*
Ga0066675_102094072	3300005187	Soil	LQYVLTCVVEPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLTHSK*
Ga0066388_1047382791	3300005332	Tropical Forest Soil	MLPAARARARLRYAKILRLAGQEVATRNKATLEQVLESGKQL
Ga0066388_1057247221	3300005332	Tropical Forest Soil	EEMLAAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGRQQ*
Ga0066681_107317561	3300005451	Soil	AARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQQ*
Ga0066697_100701694	3300005540	Soil	AKLRYAKILRLAAEEVATRNKATLEEVLTGGKQE*
Ga0066697_101799351	3300005540	Soil	AARARAKARYAKILRLAGEEVATRNQATLEQVLTHSK*
Ga0066701_102831731	3300005552	Soil	VLTCMIEPPEEVLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQP*
Ga0066692_105579372	3300005555	Soil	EEVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTSGTQE*
Ga0066692_108073512	3300005555	Soil	ARLRYAKILRLAAEEVTTRNKATLEEVLTGGKQQ*
Ga0066707_107914202	3300005556	Soil	ARAKLRYAKILRLAAEEVATRNEATLEEVLTAGKQQ*
Ga0066704_103584971	3300005557	Soil	RARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQQ*
Ga0066704_110018311	3300005557	Soil	AARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQP*
Ga0066693_104477321	3300005566	Soil	LQYVLTCVVEPPDEALPAARARAKARYAKILRLAGEDGDSKHLEQVLSHG*
Ga0066703_103120562	3300005568	Soil	MVEPPDDVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLTRGK*
Ga0066903_1015159542	3300005764	Tropical Forest Soil	ARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ*
Ga0070717_109359141	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TCLVEPPEEVLPAARARAKARYAKILRLAGQEVATRNQATLEQVLEHSKQQ*
Ga0070716_1006428722	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TCMVEPPDDMLEAARARAKARYAKILRHAGQEVATRNKATLEEVLTRGKS*
Ga0066665_114769751	3300006796	Soil	VVEPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVL
Ga0066659_109030271	3300006797	Soil	CMIEPPEEVLPAARARARIRYTKILHLAAQVVATRNKATLEEVLTSGNP*
Ga0066660_110757902	3300006800	Soil	EEVLPAARARAQLRYARILRLAAEEVATRNKATLEDVLTGGKQE*
Ga0079220_103761992	3300006806	Agricultural Soil	ARAKARYAKILRHAGQEVATRNKATLEEVLTRGK*
Ga0079220_105344412	3300006806	Agricultural Soil	ARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGK*
Ga0075426_111552031	3300006903	Populus Rhizosphere	VEPPEDVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLTRGK*
Ga0099794_100785645	3300007265	Vadose Zone Soil	EPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLTHSK*
Ga0066710_1011483123	3300009012	Grasslands Soil	EEVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTSGPQK
Ga0066710_1015758452	3300009012	Grasslands Soil	PEEVLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQP
Ga0066709_1005358441	3300009137	Grasslands Soil	MVEPLEEVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTSG
Ga0134082_100448923	3300010303	Grasslands Soil	RAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQE*
Ga0134067_102700743	3300010321	Grasslands Soil	CMVEPPDDLLEAARARAKTRYAKILRHAGQEVATRNKATLEEVLTRGK*
Ga0134080_100333171	3300010333	Grasslands Soil	MIEPPEEVLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQQ*
Ga0134080_105504221	3300010333	Grasslands Soil	EPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLTHSKQQ*
Ga0126370_107854771	3300010358	Tropical Forest Soil	PPEDVLPAARARAKLRYAKILRLAGQEVATRNKATLEGVLTHGKQQ*
Ga0126376_125552861	3300010359	Tropical Forest Soil	VLTCVVEPPEDVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLEHSKQQ*
Ga0126378_116652461	3300010361	Tropical Forest Soil	ARARAKLRYAKMLCFAGQEVATRNKATPEGVLAHGKQQ*
Ga0126381_1021442432	3300010376	Tropical Forest Soil	EVLPAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGK*
Ga0126381_1022062271	3300010376	Tropical Forest Soil	AKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ*
Ga0137393_109039492	3300011271	Vadose Zone Soil	ARARAKLRYSKILRLAAQEVATRNKTTLEEVIAHGRTS*
Ga0137383_101969411	3300012199	Vadose Zone Soil	EEVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLTGGKQQ*
Ga0137399_100472251	3300012203	Vadose Zone Soil	PEEVLPAARARAKARYAKILRLAGEEVAMRNQATLEQVLTHSKQQ*
Ga0137362_114576682	3300012205	Vadose Zone Soil	VLTCVVEPPDDVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLTRGNQ*
Ga0137371_100363991	3300012356	Vadose Zone Soil	PPEEVLPAARARAKLRYARILRLAAEEVATWNKATLEEVLTGGKQQ*
Ga0137390_107549201	3300012363	Vadose Zone Soil	RTRARLRYAKILRLAAEEVTTRNKATLEEVLACGKQQ*
Ga0137398_112590382	3300012683	Vadose Zone Soil	PDDVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLTRGK*
Ga0137359_105734102	3300012923	Vadose Zone Soil	VLPAARARAKARYAKILRLAGQEVATRNQATLEQVLTHSK*
Ga0137416_103333773	3300012927	Vadose Zone Soil	LSAARARAKLRYARILRLAAEEVTTRNKATLEEVLTGGKQP*
Ga0126369_115073212	3300012971	Tropical Forest Soil	YVLTCVAEPPEEMLAAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGRQQ*
Ga0134078_101400102	3300014157	Grasslands Soil	PEEVLPAARARARLRYAKILRLAAEEVTTRNKATLEEVLTCGKQQ*
Ga0137412_112926272	3300015242	Vadose Zone Soil	LPAALARAKLRYIKILRHAAQEVATRNKTTLEEVITHGSPS*
Ga0134073_100081791	3300015356	Grasslands Soil	QYVLTCMVEPPEEVLPAARARAKLRYARILRLAAEEVSTRNKATLEEVLTGGKQE*
Ga0182041_116689262	3300016294	Soil	AEPPEEVLPAARARAKLRYAKILRLAGQEVANRNKATLEGVLGHGKQQ
Ga0182034_102258813	3300016371	Soil	DELLPAARARARLRYTTILHHAAQEVATRNKATLEEVLTAGKQQ
Ga0182040_101180131	3300016387	Soil	PPEEVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLNGRKES
Ga0182040_118700611	3300016387	Soil	RARLRYAKILRLAGQEVATRNKATLEQVLESGKQT
Ga0182037_101921542	3300016404	Soil	AEPPEEVLPAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGKQ
Ga0182037_111082071	3300016404	Soil	LPAARARARLRYGKILRLAAQEVATRNKATLEEVLAGGKSESLQS
Ga0182037_114716452	3300016404	Soil	ARARARLRYAKILRLAGQEVATRNKATLEEVLNGRKES
Ga0182039_103203301	3300016422	Soil	EEVLPAARARARLRYAKILRLAGQEVAMRNKATLKEVLNGGREF
Ga0182039_112724621	3300016422	Soil	TCVAEPPEEVLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0187778_100142026	3300017961	Tropical Peatland	ALEAARARAKARYVKILRHAGQEVATRNKATLEEVLTRGK
Ga0187772_113611032	3300018085	Tropical Peatland	VEPPEELLPAARAHARLRYAKILRIAAQEVATRNKATLEEVLAHGKQP
Ga0187770_102051193	3300018090	Tropical Peatland	VLTCVAEPPEEVLPAARARAKLRYAKILRLAGQEVATRNKATLEQVLESGRQS
Ga0066667_108844821	3300018433	Grasslands Soil	MAPEEVLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTG
Ga0066669_113214602	3300018482	Grasslands Soil	VLPAARARAKARYAKILRLAGQEVATRNKATLEEVLSHGKQQ
Ga0187894_101837262	3300019360	Microbial Mat On Rocks	ARARAKARYAKILRHAGQEVATRNKSTLEEVLIRGK
Ga0210399_104650612	3300020581	Soil	QYVLTCMIEPPEEVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTHGK
Ga0210400_106521062	3300021170	Soil	YVLTCMVEPPDDVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLNRGK
Ga0210408_102421972	3300021178	Soil	DVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLNRGK
Ga0126371_113232641	3300021560	Tropical Forest Soil	RARARLRYTKILRLAGQEVATRNKATLEEVLTHGKQQ
Ga0209350_10126143	3300026277	Grasslands Soil	MAPEEVLPAARARAKLRYAKILRLAAEEVATRNEATLEEVLTAGKQQ
Ga0209234_11673931	3300026295	Grasslands Soil	PPEEVLPAARARAKLRYARILRLAAEEVATRNKATLEEVLTGGKQE
Ga0209688_11070442	3300026305	Soil	ARARARLRYTKILHLAAQEVATRNKATLEEVLTSGNP
Ga0209265_11628961	3300026308	Soil	VVEPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLTH
Ga0209687_10481241	3300026322	Soil	RAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQE
Ga0209472_11975221	3300026323	Soil	ARARARLRYAKILRLAAQEVATRNKATLEEVLTSGTQE
Ga0209158_11567142	3300026333	Soil	LTCMVEPPEEVLPAALARAKLRYARILRLAAEEVATRNKATLEEVLTGGKQQ
Ga0209057_11735252	3300026342	Soil	VLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTGGKQQ
Ga0209159_11065963	3300026343	Soil	VEPLEEVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTSGPQK
Ga0209378_10419811	3300026528	Soil	VLPAARARAKLRYAKILRLAAEEVATRNEATLEEVLTAGKQQ
Ga0209807_12191881	3300026530	Soil	VVEPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLTHS
Ga0209648_107580122	3300026551	Grasslands Soil	VEPPEDVLPATRARAKARYAKILRLAGQEVATRNRATLEEVLTHSKNQ
Ga0209577_106619082	3300026552	Soil	QYVLTCMVEPPEEVLPAARARAKLRYAKILRLAAEEVATRNKATLEEVLTAGKQQ
Ga0207758_10155193	3300026895	Tropical Forest Soil	IEPPEELLPSARAHARLRYAKILRLAGQEVATRNKATLEEVLNGGKES
Ga0207817_10242391	3300026979	Tropical Forest Soil	YVLTCTIEPPEELLPSARAHARLRYAKILRLAGQEVATRNKATLEEVLNGGKES
Ga0207854_10135222	3300026982	Tropical Forest Soil	PEELLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0207855_10475911	3300027039	Tropical Forest Soil	AARARARLRYAKILRLAGQEVATRNKATLEEVLNGGKES
Ga0209488_104792821	3300027903	Vadose Zone Soil	VEPPDDVLEAARARAKARYAKILRHAGQEVATRNKATLEEVLTRGK
Ga0137415_101919433	3300028536	Vadose Zone Soil	YVLTCVVEPPEEVLPAARARAKARYTKILRLAGEEVATRNQATLEQVLTHSK
Ga0137415_102690385	3300028536	Vadose Zone Soil	YVLTCVVEPPEEVLPAARARAKARYAKILRLAGEEVATRNQATLEQVLTHSK
Ga0318541_107521721	3300031545	Soil	CTIEPPEEVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLNGRKES
Ga0318538_107517742	3300031546	Soil	CVPEPPEEVLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0318515_106826671	3300031572	Soil	VLTCVAEPPEELLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0307476_113113132	3300031715	Hardwood Forest Soil	AARARAKARYTKILRHAAQEVATRNKATFEEVLTRGKE
Ga0306917_104876742	3300031719	Soil	ELLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0306918_112458182	3300031744	Soil	VLTCVPEPPEDLLPAARARARLRYAKILRLAGQEVATRNKAPLEHVLESGKQP
Ga0318521_102856141	3300031770	Soil	ILTCVAEPPEELLPAARARAKLRYAKMLRFAGQEVATRNKVTLEQVLTHGKQ
Ga0307473_106038162	3300031820	Hardwood Forest Soil	PPEEVLPAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGKHQ
Ga0310917_109863542	3300031833	Soil	LTCVAEPPEEVLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0318511_102944442	3300031845	Soil	QYVLTCTAEPPEDVLPAARVRAKLRYAKILRLAGQEVATRNKATLEEVLTHGKQQ
Ga0306925_117035021	3300031890	Soil	LQYVLTCVAEPPEEVLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0306925_118526291	3300031890	Soil	IEPPDDVLPAARARARLRYAKILRIAAQEVATRNKATLEEVLAHGKQP
Ga0306923_100308777	3300031910	Soil	ILTCVAAPPEELLPAARARAKLRYAKMLRFAGQEVATRNKVTLEQVLTHGKQ
Ga0306923_119313241	3300031910	Soil	RARARLRYAKILRLAGQEVAMRNKATLKEVLNGGREF
Ga0306921_100718341	3300031912	Soil	DDVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTHGKQP
Ga0306921_106305422	3300031912	Soil	VLTCTAEPPEEVLPAARARAKLRYAKILRLAGQEVANRNKATLEGVLGHGKQQ
Ga0310912_102503301	3300031941	Soil	IIEPPEEVLPAARARARLRYAKILRLAGQEVATRNKATLEQVLESGKQP
Ga0310912_103943064	3300031941	Soil	PVDLLPAARAPARHRSAKTLRLAGQVVATLNNATLEEVLNGGKEA
Ga0310912_109204841	3300031941	Soil	EEVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLNGRKES
Ga0310910_109472072	3300031946	Soil	VLPAARARAKLRYAKILRLAGQEVATRNKATLEQVLESGKQT
Ga0310909_114224822	3300031947	Soil	EVLPAARARARLRYAKILRLAGQEVATRNKATLEEVLNGRKES
Ga0306926_102912715	3300031954	Soil	LTCTIEPPEEMLPAARARARLRYGKILRLAGQEVATRNKATLEEVLSGGKDS
Ga0306922_104624301	3300032001	Soil	VLPAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGKQQ
Ga0306922_105435963	3300032001	Soil	TIEPPEELLPAARAHARLRYAKILRLAGQEVATRNKATLEEVLNGGKEA
Ga0306922_112294351	3300032001	Soil	ARARLRYAKILRLAGQEVATRNKATLEQVLESGKQL
Ga0306922_115517261	3300032001	Soil	TIEPPEEVLPAARARARLRYAKILRLAGQEVAMRNKATLKEVLNGGREF
Ga0310911_106758441	3300032035	Soil	VAEPPEEVLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLAHGKQQ
Ga0318559_101989832	3300032039	Soil	VLPAARARAKLRYAKILRLAGQEVATRNKATLEEVLTHGKQH
Ga0318532_102694341	3300032051	Soil	PEEVLPAARARAKLRYAKMLRFAGQEVATRNKATLEGVLTHGKQQ
Ga0318533_109671832	3300032059	Soil	ARAKLRYAKMLRFAGQEVATRNKVTLEQVLTHGKQ
Ga0306924_113496742	3300032076	Soil	LLPAARAHARLRYAKILRLAGQEVATRNKATLEEVLNGGTET
Ga0307471_1028673552	3300032180	Hardwood Forest Soil	PPEDVLPAARARARLRYAKILRLAAQEVATRNKATLEEVLTSGKQQ
Ga0306920_1001105339	3300032261	Soil	YVLTCTIEPPEEVLPAARARARLRYAKILRLAGQEVAMRNKATLKEVLNGGREF
Ga0306920_1031624871	3300032261	Soil	REDVLPAARARARLRYAKILRLAGQEVATRNKATLEQVLESGKQL
Ga0310914_100679715	3300033289	Soil	TCVPEPPEDLLPAARARARLRYAKILRLAGQEVATRNKAPLEHVLESGKQP
Ga0310914_107100411	3300033289	Soil	RARARLRYAKILRLAGQEVATRNKATLEEVLNGRKES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F065038

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences