Metagenome / Metatranscriptome Family F065013

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065013
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	74 residues
Representative Sequence	HWTMEMGSTVSAQLIGWTRTTLSYGDVVTLYVWQAKTKAPVGRFNKVEFSDGTTMRDTQTGADDGGRADTDVRQ
Number of Associated Samples	118
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.34 %
% of genes near scaffold ends (potentially truncated)	96.09 %
% of genes from short scaffolds (< 2000 bps)	95.31 %
Associated GOLD sequencing projects	111
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.875 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (9.375 % of family members)
Environment Ontology (ENVO)	Unclassified (30.469 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.188 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.53% Coil/Unstructured: 76.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00652	Ricin_B_lectin	5.47
PF07859	Abhydrolase_3	3.91
PF07995	GSDH	2.34
PF02276	CytoC_RC	2.34
PF13620	CarboxypepD_reg	1.56
PF08327	AHSA1	1.56
PF01850	PIN	0.78
PF00701	DHDPS	0.78
PF03814	KdpA	0.78
PF01740	STAS	0.78
PF08447	PAS_3	0.78
PF00593	TonB_dep_Rec	0.78
PF01571	GCV_T	0.78
PF13360	PQQ_2	0.78
PF07238	PilZ	0.78
PF05988	DUF899	0.78
PF00106	adh_short	0.78
PF01161	PBP	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	3.91
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	2.34
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.56
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.78
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	0.78
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.88 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.88 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.88 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	75.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.25 %
Unclassified	root	N/A	3.12 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	60.16 %
Unclassified	root	N/A	3.12 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.56 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.56 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	60.16 %
Unclassified	root	N/A	3.12 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.56 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.56 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.78 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.78 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	60.16 %
Unclassified	root	N/A	3.12 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.78 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.78 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.78 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.78 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	60.16 %
Unclassified	root	N/A	3.12 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.56 %
Altererythrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter	0.78 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.78 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.78 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	60.16 %
Unclassified	root	N/A	3.12 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.56 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.78 %
unclassified Altererythrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → unclassified Altererythrobacter	0.78 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.78 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	60.16 %
Unclassified	root	N/A	3.12 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.56 %
Altererythrobacter sp. Root672	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → unclassified Altererythrobacter → Altererythrobacter sp. Root672	0.78 %
Novosphingobium sp. Rr 2-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	0.78 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.78 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106172320	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300004114\|Ga0062593_101770643	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300005093\|Ga0062594_100062215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1995	Open in IMG/M
3300005093\|Ga0062594_102987491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300005329\|Ga0070683_101312922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300005336\|Ga0070680_101690962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300005336\|Ga0070680_101981992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300005344\|Ga0070661_100731678	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300005354\|Ga0070675_101701364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	582	Open in IMG/M
3300005438\|Ga0070701_10664222	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300005441\|Ga0070700_101787477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005458\|Ga0070681_11110296	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300005536\|Ga0070697_101891013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300005538\|Ga0070731_10050197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2781	Open in IMG/M
3300005546\|Ga0070696_100339296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1161	Open in IMG/M
3300005564\|Ga0070664_102394146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300005617\|Ga0068859_101582596	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300005713\|Ga0066905_100123210	All Organisms → cellular organisms → Bacteria → Acidobacteria	1813	Open in IMG/M
3300005841\|Ga0068863_101046928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300006028\|Ga0070717_11052996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300006032\|Ga0066696_10514160	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300006049\|Ga0075417_10070608	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300006173\|Ga0070716_101832219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	503	Open in IMG/M
3300006196\|Ga0075422_10417857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300006845\|Ga0075421_101092614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300006845\|Ga0075421_101815388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300006852\|Ga0075433_10249791	All Organisms → cellular organisms → Bacteria → Acidobacteria	1574	Open in IMG/M
3300006871\|Ga0075434_101335016	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300006903\|Ga0075426_10573271	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300007757\|Ga0102949_1121116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300009090\|Ga0099827_11161529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300009094\|Ga0111539_12479841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300009098\|Ga0105245_11429698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	742	Open in IMG/M
3300009100\|Ga0075418_11849662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300009147\|Ga0114129_10014207	All Organisms → cellular organisms → Bacteria	11344	Open in IMG/M
3300009147\|Ga0114129_10995705	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300009409\|Ga0114993_10740329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300009553\|Ga0105249_12080662	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300009609\|Ga0105347_1132484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300009661\|Ga0105858_1226932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300009806\|Ga0105081_1068775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300010040\|Ga0126308_11071893	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300010041\|Ga0126312_10608198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300010043\|Ga0126380_11083531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300010360\|Ga0126372_10918682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300010360\|Ga0126372_12525361	Not Available	565	Open in IMG/M
3300010366\|Ga0126379_13105924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300011425\|Ga0137441_1181874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300011429\|Ga0137455_1089554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300011429\|Ga0137455_1194083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300011443\|Ga0137457_1143477	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300011444\|Ga0137463_1096062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1114	Open in IMG/M
3300011445\|Ga0137427_10110643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1113	Open in IMG/M
3300012146\|Ga0137322_1071147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300012173\|Ga0137327_1147463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300012200\|Ga0137382_10303008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1115	Open in IMG/M
3300012206\|Ga0137380_11176276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300012207\|Ga0137381_11172949	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300012360\|Ga0137375_10349124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1314	Open in IMG/M
3300012948\|Ga0126375_11286927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	613	Open in IMG/M
3300013306\|Ga0163162_12480669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300014159\|Ga0181530_10564474	Not Available	560	Open in IMG/M
3300014874\|Ga0180084_1074652	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300014878\|Ga0180065_1122928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300014880\|Ga0180082_1034282	All Organisms → cellular organisms → Bacteria → Acidobacteria	1058	Open in IMG/M
3300014969\|Ga0157376_10423580	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300015200\|Ga0173480_10119655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1305	Open in IMG/M
3300015371\|Ga0132258_11829772	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300015374\|Ga0132255_100461935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1860	Open in IMG/M
3300017994\|Ga0187822_10408018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → unclassified Altererythrobacter → Altererythrobacter sp. Root672	502	Open in IMG/M
3300018000\|Ga0184604_10100616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300018028\|Ga0184608_10186020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300018074\|Ga0184640_10296450	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300018078\|Ga0184612_10365715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300018079\|Ga0184627_10264938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300018083\|Ga0184628_10142928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1244	Open in IMG/M
3300018083\|Ga0184628_10535012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300018422\|Ga0190265_10656917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169	Open in IMG/M
3300018466\|Ga0190268_10091605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1380	Open in IMG/M
3300018476\|Ga0190274_10805266	All Organisms → cellular organisms → Bacteria → Acidobacteria	997	Open in IMG/M
3300018481\|Ga0190271_11183879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300018482\|Ga0066669_11044285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300019377\|Ga0190264_11662525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300020200\|Ga0194121_10039301	All Organisms → cellular organisms → Bacteria	4046	Open in IMG/M
3300020579\|Ga0210407_10678268	Not Available	800	Open in IMG/M
3300021178\|Ga0210408_10614564	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300021402\|Ga0210385_11495087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300021478\|Ga0210402_10195976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1855	Open in IMG/M
3300022202\|Ga0224498_10203484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300022694\|Ga0222623_10143532	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300022717\|Ga0242661_1021609	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10419146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300025917\|Ga0207660_11400474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300025923\|Ga0207681_11299527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300025938\|Ga0207704_10842478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	768	Open in IMG/M
3300025938\|Ga0207704_11211002	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300025944\|Ga0207661_11159475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300025945\|Ga0207679_10228230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1570	Open in IMG/M
3300026021\|Ga0208140_1041108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300026075\|Ga0207708_10832262	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300026075\|Ga0207708_10876059	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300026088\|Ga0207641_10203378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1827	Open in IMG/M
3300026316\|Ga0209155_1055326	All Organisms → cellular organisms → Bacteria → Acidobacteria	1531	Open in IMG/M
3300027909\|Ga0209382_10030320	All Organisms → cellular organisms → Bacteria	6516	Open in IMG/M
3300028380\|Ga0268265_11211499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300028792\|Ga0307504_10045318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1234	Open in IMG/M
3300028800\|Ga0265338_10911171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300028803\|Ga0307281_10111273	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300028812\|Ga0247825_10021706	All Organisms → cellular organisms → Bacteria → Acidobacteria	4203	Open in IMG/M
3300028881\|Ga0307277_10381227	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300031057\|Ga0170834_102849954	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300031093\|Ga0308197_10379745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300031663\|Ga0307484_103654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300031718\|Ga0307474_10830824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300031852\|Ga0307410_10989456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300031892\|Ga0310893_10048312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1402	Open in IMG/M
3300031892\|Ga0310893_10277489	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031944\|Ga0310884_10044537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1957	Open in IMG/M
3300031962\|Ga0307479_10061495	All Organisms → cellular organisms → Bacteria → Proteobacteria	3619	Open in IMG/M
3300032000\|Ga0310903_10685477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300032002\|Ga0307416_101967103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300032126\|Ga0307415_101318258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300032205\|Ga0307472_100722253	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300033158\|Ga0335077_11534557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300034090\|Ga0326723_0148614	Not Available	1029	Open in IMG/M
3300034114\|Ga0364938_120092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300034115\|Ga0364945_0264014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300034354\|Ga0364943_0194523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.22%
Host-Associated	Host-Associated	25.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.91%
Plants	Host-Associated → Plants	25.78%
Aquatic	Environmental → Aquatic	20.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.75%
Sediment	Environmental → Aquatic → Sediment	15.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.03%
Freshwater	Environmental → Aquatic → Freshwater	2.34%
Marine	Environmental → Aquatic → Marine	2.34%
Floodplain	Environmental → Terrestrial → Floodplain	2.34%
Peat	Environmental → Terrestrial → Peat	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.06%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.12%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.34%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.56%
Lake	Environmental → Aquatic → Freshwater → Lake	0.78%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.78%
Strait	Environmental → Aquatic → Marine → Strait	0.78%
Sediment	Environmental → Aquatic → Marine → Sediment	0.78%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.34%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.78%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	9.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.47%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.12%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.34%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.34%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.56%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.78%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.78%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.78%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007757	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D1_MG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012146	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020200	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022202	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026021	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034114	Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1061723201	3300000956	Soil	KNEKGEVQHWIMEMGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGAFAGRFNKVDFPDGTTMRDTQTGGDDGGRADTGVRQ*
Ga0062593_1017706431	3300004114	Soil	VEHWTMEMGSTVSAQLLGWTRTSLAYGDVVTLYVWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0062594_1000622152	3300005093	Soil	KNDKGEVEHWTMEMGSTVSAQLLGWTRTSLAFGDVVTLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0062594_1029874912	3300005093	Soil	QLLGWTRTSLAYGDVVTLYVWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0070683_1013129221	3300005329	Corn Rhizosphere	WTMEMGSTVSAQLIGWTRTTLQPGDKVTLYVWQAKTKAPVGRFNKVVFMDGTTMRDTQTGADDGGRADTDVRQ*
Ga0070680_1016909621	3300005336	Corn Rhizosphere	DYKNEKGEDEHWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0070680_1019819922	3300005336	Corn Rhizosphere	KGEVEHWTMEMGSTVSAQLLGWTRTSLAYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0070661_1007316782	3300005344	Corn Rhizosphere	TVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0070675_1017013641	3300005354	Miscanthus Rhizosphere	TVSAQLLGWTRTTLNYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0070701_106642222	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	GSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0070700_1017874772	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	TMEMGSTVSAQLIGWTRTTLAYGDVVTLYVWPAKTKLPVGRFNKVVFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0070681_111102962	3300005458	Corn Rhizosphere	EVEHWTMEMGSTVSAQLLGWTRTSLSYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0070697_1018910132	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MEMGSTVSSQLIGWTRTTLHYGDVVTLYVWQAKTRAPVARFNKVIFADGTTMRDTQTGADDGGRADTEVGR*
Ga0070731_100501973	3300005538	Surface Soil	VQHWTMEMGSTVSSQLIGWSRTTLHYGDVVTLYVWQAKTRAPVGRFNKVILADGTTMRDTQTGADDGGRADTDVGR*
Ga0070696_1003392961	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	IKADFKNDKGEVEHWTMEMGSTVSAQLIGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFPDGTVMRDTQTGADDGGRADTDVRQ*
Ga0070664_1023941462	3300005564	Corn Rhizosphere	KNDKGEVEHWTMEMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0068859_1015825961	3300005617	Switchgrass Rhizosphere	LIKADFKNDKGEVEHWTMEMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0066905_1001232102	3300005713	Tropical Forest Soil	HWTMEMGSTVSAQLIGWTRTTLSYGDVVTLYVWQAKTKAPVGRFNKVEFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0068863_1010469282	3300005841	Switchgrass Rhizosphere	EHWTMEMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0070717_110529961	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	WTNDKGEVEHWTMEMGSTVSAQLIGWTRTTLQYGDVVTLYVWQAKTKVPVGRFNKVVFMDGTTMRDTQTGADDGGRADTDVRQ*
Ga0066696_105141601	3300006032	Soil	WTMEMGSTVSAQLLGWSRTTLAYGDVVTLYVWPAKTKLPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0075417_100706081	3300006049	Populus Rhizosphere	TVSAQLIGWTRNTLQPGDKVTLYVWRAKTGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADTGQRN*
Ga0070716_1018322191	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEMGSTPASQLIGWTRTSLKQGDVVTLYVWQAKTGLPVGRFNKVVLADGKVMRDTQTGADDGRRADTGVGR*
Ga0075422_104178571	3300006196	Populus Rhizosphere	ELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0075421_1010926141	3300006845	Populus Rhizosphere	WTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0075421_1018153881	3300006845	Populus Rhizosphere	MEMGSTVSAQLIGWSRTTLQPGDKVTLYVWRAKTGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADTGVRN*
Ga0075433_102497912	3300006852	Populus Rhizosphere	KLLGWSRTTLSYGDVVTLYVWQAKTKAPVGRFNKVEFADGTVMRDTQTGADDGGRADTEVRP*
Ga0075434_1013350161	3300006871	Populus Rhizosphere	PLIKADYKNEKGEVEHWTMEMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0075426_105732711	3300006903	Populus Rhizosphere	EKGEVEHWTMEMGSTVSAQLLGWTRTTLSYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0102949_11211162	3300007757	Soil	MEMGSTVSSQLVGWTRTALLPGDVVTLYVWPAKTGEPVGRFNKVEFDDGTVLRDSQRGADDGGRSDTGLRQ*
Ga0099827_111615291	3300009090	Vadose Zone Soil	HWTMEMGSTVSAQLLGWTRTTLAFGDVVTLYVWQAKTKAPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0111539_124798411	3300009094	Populus Rhizosphere	WTMEMGSTVSAQLLGWTRTSLAFGDVVTLYVWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRP*
Ga0105245_114296982	3300009098	Miscanthus Rhizosphere	PHPLIKADYKNEKGEVEHWTMEMGSTVSAQLLGWTRTSLAYGDVVTLYVWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0075418_118496621	3300009100	Populus Rhizosphere	KNEKGEDEHWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0114129_1001420715	3300009147	Populus Rhizosphere	EVQHWTMEMGSIPSSQLIGWTRTTLKPGDVVTLYVWQAKTKAPVGRFNKVVLADGTTMRDTQTGADDGGRADTDVGR*
Ga0114129_109957051	3300009147	Populus Rhizosphere	LIGWTRTTLNYGDVVTLYVWQAKTRVPVGRFNKVVFADGSTMRDTQTGADDGGRADTGVRQ*
Ga0114993_107403292	3300009409	Marine	LGWTRTTVQPGDVVTLYVWQAKTGKLVGRFNKVELADGTTMRDSQRGADDGGRADTGLRQ
Ga0105249_120806622	3300009553	Switchgrass Rhizosphere	MSAGLIGWTRTTLKHGDIVTLYVWQAKTRKPVGRFNKVVFADGSTMRDTQTGADDGTRADTEVGRGGH*
Ga0105347_11324841	3300009609	Soil	AQLVGWTRTSLQPGDVVTLYVWQAKTGALVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0105858_12269321	3300009661	Permafrost Soil	VEHWTMEMGSTVSAQLLGWSRTTLAYGDVVTLYVWQAKTKVPVGRFNKVVFSDGTTMRDTQTGADDGGRADTGVRQ*
Ga0105081_10687751	3300009806	Groundwater Sand	GWTRTTLQPGDKVTLYVWRAKTGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADGGVRN*
Ga0126308_110718931	3300010040	Serpentine Soil	VSAQLLGWTRTTLAYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0126312_106081981	3300010041	Serpentine Soil	HWTMEMGSTVSAQLIGWSRTTLQPGDVVTLYVWRAKTGATVGRFNKVDFADGTTMRDTQRGADDGGRTDTGVRN*
Ga0126380_110835311	3300010043	Tropical Forest Soil	ADFKDEKGEVQHWTMEMGSTVSAQLLGWTRTSLSYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0126372_109186822	3300010360	Tropical Forest Soil	DYKNEKGEVEHWTMEMGSTVSAQLIGWTRTTLSFGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0126372_125253611	3300010360	Tropical Forest Soil	TPASQLIGWTRTTLKPNDVVTLYFWRAKSGAPVGRFNKVVLADGTVMRDTQTGADDGGRADNEVGR*
Ga0126379_131059242	3300010366	Tropical Forest Soil	LIKADFTNDKGEVEHWTMEMGSTVSAQLIGWTRTTLQYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0137441_11818741	3300011425	Soil	KADYKDEKGEVQHWTMEMGSTVSAQLVGWTRTSLNYGDVVTLYVWQAKTGATVGRFNKVDFPDGTVMRDTQTGGDDGGRADTGVRQ*
Ga0137455_10895542	3300011429	Soil	IQHWTMEMGSTVSAQLLGWTRTSLAYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTTMRDTQTGADDGGRADTGVRQ*
Ga0137455_11940831	3300011429	Soil	MELGGIVGAQLVGWTRTSLQPGDVVTLYVWQAKTGALVGRFNKVDFADGTTMRDTQTGGDDGGRADTGLRQ*
Ga0137457_11434772	3300011443	Soil	LVQLIGWNRGSLAAGDVVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0137463_10960622	3300011444	Soil	ADYKDEKGEVQHWTMEMGSTISAQLLGWTRTTLAYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRETQTGADDGGRADTDVRQ*
Ga0137427_101106432	3300011445	Soil	DEKGEVQHWTMEMGSTVSAQLVGWTRTTLNYGDVVTLYVWQAKTKLPVGRFNKVDFPDGTVMRDTQTGGDDGGRSDTGVRQ*
Ga0137322_10711471	3300012146	Soil	MGSTVSAQLIGWTRTTIAPGDVVTLYVWQAKTGTHAGRFNKVEFADGTTMRDTQTGGDAGGRADTGLRQ*
Ga0137327_11474631	3300012173	Soil	TMEMGSTVSAQLVGWTRTSLNSGDVVTLYVWQAKTKLPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0137382_103030081	3300012200	Vadose Zone Soil	TTETGSTLAISLIGWTRTTLKPGDLITIYLWKAKTGLQVGRLNKVILADGTVMRDTQTGADNGARADTGVGR*
Ga0137380_111762762	3300012206	Vadose Zone Soil	WTMEMGSTVSAQLLGWNRTTLAYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0137381_111729492	3300012207	Vadose Zone Soil	GSTISAQLLGWTRTTLAFGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0137375_103491243	3300012360	Vadose Zone Soil	MEMGSTISAQLLGWTRTTLNYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0126375_112869271	3300012948	Tropical Forest Soil	PLIKADYKNDKGEIEHWTMEMGSIPSSQLIGWSRTTLKPNDVVTLYVWQAKTHAPVGRFNKVILADGTTMRDTQTGADDGGRADTEVGR*
Ga0163162_124806692	3300013306	Switchgrass Rhizosphere	VQHWTMEMGSTMSAGLIGWTRTTLKHGDVVTLYVWQAKTRKPVGRFNKVVFADGSTMRDTQTGADDGTRADTEVGRGGH*
Ga0181530_105644742	3300014159	Bog	EHWTMEMGSTPASQLIGWSRTTLKPGDMVTLYVWQAKTHLTVGRFNKVILADGKVMRDTQTGADNGGRADTEVGR*
Ga0180084_10746522	3300014874	Soil	QHWTMELGSIPSAQLIGWNRGSLAAGDVVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0180065_11229281	3300014878	Soil	HWTMEMGSTVSAQLLGWTRTTLASGDVVTLYVWQAKTKVPVGRFNKVEFSDGTTMRDTQTGADDGGRADTGVRQ*
Ga0180082_10342822	3300014880	Soil	VSAQLLGWTRTTLASGDVVTLYVWQAKTKVPVGRFNKVEFSDGTTMRDTQTGADDGGRADRDVRQ*
Ga0157376_104235802	3300014969	Miscanthus Rhizosphere	VEHWTMEMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0173480_101196551	3300015200	Soil	LIKADYKDEKGAVQQWTMELGGLVGAQLIGWTRTSLQPGDVVTLYVWKAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRSDSGQRN*
Ga0132258_118297722	3300015371	Arabidopsis Rhizosphere	WTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0132255_1004619351	3300015374	Arabidopsis Rhizosphere	KADYKNEKGEVEHWTMEMGSTVSAQLLGWSRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0187822_104080181	3300017994	Freshwater Sediment	HPLIKCDYKNEKGELQHWIMEMGSTPASQLIGWTRTSLKPGDVVTLYVWQAKTGLPVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0184604_101006162	3300018000	Groundwater Sediment	WTMEMGSTVSAQLIGWTRTTLNFGDVVTLYVWPAKTKVPVGRFNKVVFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0184608_101860202	3300018028	Groundwater Sediment	TISAQLLGWTRTSLASGDVVTLYVWQAKTKAPVGRFNKVEFSDGTIMRDTQTGADDGGRADRDVRQ
Ga0184640_102964502	3300018074	Groundwater Sediment	TMELGGVVGAQLIGWTRTTLQPGDVVTLYVWKAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRADTGLRQ
Ga0184612_103657151	3300018078	Groundwater Sediment	KVQQWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWQAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADQGKRN
Ga0184627_102649382	3300018079	Groundwater Sediment	EMGSTVSAQLIGWTRTTIAPGDVVTLYVWQAKTGVTVGRFNKVDFADGTTMRDTQTGGDDGGRADTGLRQ
Ga0184628_101429281	3300018083	Groundwater Sediment	ADYKDEKGAVQQWTMELGGLVGAQLIGWTRTSLQPGDVVTLYVWKAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRSDSGQRN
Ga0184628_105350121	3300018083	Groundwater Sediment	TMELGSTVSAQLIGWTRTTLQPGDVVTLYVWQAKTGVTVGRFNKVDFADGTTMRDTQTGGDDGGRADTGLRQ
Ga0190265_106569172	3300018422	Soil	ELGGLVGAQLIGWTRTSLVPGDVVTLYVWKAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRSDAGQRN
Ga0190268_100916051	3300018466	Soil	TVEHWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFTDGTTMRDTQRGGDDGGRADTGVRQ
Ga0190274_108052662	3300018476	Soil	VQHWTMELGSIPSAQLIGWNRGSLAAGDVVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ
Ga0190271_111838791	3300018481	Soil	IGWTRTSLQPGDVVTLYVWKAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRSDSGQRN
Ga0066669_110442851	3300018482	Grasslands Soil	TEINSMSCDKAEDKYKNSNIQQYTMEKDSTMSTKIIGRSRTTLHYGDVVTLYVWQAKTHAPVGRFNKVILPDGSTMRDTQTGADDGGRTDTEVGR
Ga0190264_116625251	3300019377	Soil	LGSTVSAQLIGWTRTTLQPGDKVTLYVWQAKTGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADTGVRQ
Ga0194121_100393011	3300020200	Freshwater Lake	GSTVSAQLIGWTRTTLQPGDKVTLYVWQAKTGTTVGRFNKVDFPDGTTMRDTQRGGDDGGRADGGVRN
Ga0210407_106782681	3300020579	Soil	ASSLIGWSRNTLKRGDVITLYLWQTKSGLTVGRLNKVVLADGTVMRDTQTGADNGGRADKDVGR
Ga0210408_106145642	3300021178	Soil	VQHWTMEMGSTPASELIGWSRTSLKAGDVVTLYLWRAKTGVTVGRFNKVVFADGKIMRDTQTGADNGGRADTGVGR
Ga0210385_114950871	3300021402	Soil	STPASQLIGWTRATLKPGDVVTLYVWQAKTGLTVGRFNKVVFADGKVMRDTQTGTDNGGRADTDVGR
Ga0210402_101959762	3300021478	Soil	SQLIGWTRATLKPGDVVTLYVWQAKTGLTVGRFNKVVFADGKVMRDTQTGTDNGGRADTDVGR
Ga0224498_102034842	3300022202	Sediment	PLIKADYTDEQGNVQNWTMEMGSTVSAQLVGWTRTALLPGDVVTLYVWAAKSGAPVGRFNKLEFDDGTVLRDSQRGADDGGRSDVGVRR
Ga0222623_101435322	3300022694	Groundwater Sediment	EMGSTVSAQLIGWTRTTLAYGDVVTLYVWQAKTRVPVGRFNKVIFADGTTMRDTQTGADDGGRADTDVRQ
Ga0242661_10216091	3300022717	Soil	MGSTPASELIGWTRTTLKPGDVVTLYVWQAKTHLTVGRFNKVVLADGSTMRDTQTGADDGRRADTGVGR
(restricted) Ga0255039_104191462	3300024062	Seawater	EMGSTVSAQLVGWTRTALLPGDVVTLYVWGAKTGQPVGRFNKVEFDDGMVLRDSQRGADDGGRTDTDVRQ
Ga0207660_114004741	3300025917	Corn Rhizosphere	DYKNEKGEDEHWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ
Ga0207681_112995271	3300025923	Switchgrass Rhizosphere	PLIKADFKDEKGEVQHWTMEMGSTVSAQLLGWTRTTLAYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTTMRDTQTGADDGGRADTGVRQ
Ga0207704_108424782	3300025938	Miscanthus Rhizosphere	DKGEVEHWTMEMGSTVSAQLLGWTRTSLAFGDVVTLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0207704_112110022	3300025938	Miscanthus Rhizosphere	MGSTISAQLLGWTRTTLAYGDVVNLYVWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0207661_111594752	3300025944	Corn Rhizosphere	GEIEHWTMEMGSTVSAQLIGWTRTTLQPGDKVTLYVWQAKTKAPVGRFNKVVFMDGTTMRDTQTGADDGGRADTDVRQ
Ga0207679_102282301	3300025945	Corn Rhizosphere	FKNDKGEVEHWTMEMGSTVSAQLLGWTRTSLAYGDVVTLYVWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0208140_10411081	3300026021	Rice Paddy Soil	ASELIGWTRTTLKPGDVVTLYVWQAKTHLTVGRFNKVVLADGTVMRDTQTGADNGGRADKNVGR
Ga0207708_108322622	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	WTMEMGSTVSAQLIGWTRTTLAYGDVVTLYVWPAKTKLPVGRFNKVVFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0207708_108760591	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	IPSAQLIGWNRGSLAAGDVVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ
Ga0207641_102033782	3300026088	Switchgrass Rhizosphere	KNDKGEVEHWTMEMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ
Ga0209155_10553262	3300026316	Soil	VSAQLIGWTRTTLAYGDVVTLYVWPAKTKAPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0209382_100303201	3300027909	Populus Rhizosphere	MEMGSTVSAQLIGWSRTTLQPGDKVTLYVWRAKTGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADTGVRN
Ga0268265_112114991	3300028380	Switchgrass Rhizosphere	LGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTEVRP
Ga0307504_100453182	3300028792	Soil	KDEQGNIQHWTMEMGSTVSAQLIGWTRTTLNFGDVVTLYVWQAKTKVPVGRFNKVVFADGTTMRDTQTGADDGGRADTDVRQ
Ga0265338_109111711	3300028800	Rhizosphere	KVDYKDDKGEMQHWTIETGSTPASMLIGWTRSTLRPGDVVDIFLWKTKGDVTVGRLNKVILPNGTLMRDTQTGADNGGRADTGVGR
Ga0307281_101112731	3300028803	Soil	SAQLLGWTRTTLAYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0247825_100217064	3300028812	Soil	TVSAQLIGWTRTTLAPGDVVNLYVWKAKTGAHAGRFNKVEFADGTTMRDTQTGGDEGGRADTGVRQ
Ga0307277_103812271	3300028881	Soil	ISAQLLGWTRTTLAYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0170834_1028499542	3300031057	Forest Soil	LIGWTRATLKPGDVVTLYVWQAKTGLTVGRFNKVVFADGKVMRDTQTGTDNGGRADTDVG
Ga0308197_103797452	3300031093	Soil	QLIGWTRNTLQPGDVVTLYVWQTKTGAPVGRFNKVDLPDGTTMRDTQTGADDGGRADTGQRN
Ga0307484_1036541	3300031663	Hardwood Forest Soil	KDEKGYVQHWTMEMGSTPASQLIGWTRATLKPGDVVTLYVWQAKTGLTVGRFNKVVFADGKVMRDTQTGTDNGGRADTDVGR
Ga0307474_108308242	3300031718	Hardwood Forest Soil	KDEKGEVQHWTMEMGSTPASELIGWTRTTLKPGDVVTLYVWQAKTHLTVGRFNKVVLADGSTMRDTQTGADDGRRADTGVGR
Ga0307410_109894561	3300031852	Rhizosphere	VGAQLVGWSRTTLQPGDVVTLYVWKAKTGAMVGRFNKVDFADGTTMRDSQRGADDGGRADTGVRQ
Ga0310893_100483121	3300031892	Soil	KNEKGEDEHWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ
Ga0310893_102774892	3300031892	Soil	EMGSTVSAQLLGWTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ
Ga0310884_100445373	3300031944	Soil	TVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ
Ga0307479_100614954	3300031962	Hardwood Forest Soil	MGSTPASQLIGWTRTSLKPDDVVTLYVWQAKTGLPVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0310903_106854771	3300032000	Soil	DEHWTMELGSTVSAQLIGWSRTTLQPGDVVTLYVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ
Ga0307416_1019671031	3300032002	Rhizosphere	IGWSRTTLAPGDVVTLYVWAAKTGAHAGRFNKVDLPDGTTMRDTQTGGDDGGRADTGVRQ
Ga0307415_1013182582	3300032126	Rhizosphere	VQHWIMEMGSTVSAQLIGWSRTTLAPGDVVTLYVWAAKTGAHAGRFNKVDLPDGTTMRDTQTGGDDGGRADTGVRQ
Ga0307472_1007222531	3300032205	Hardwood Forest Soil	QHWTMEMGSTVSAQLLGWTRTTLNYGDVVTLYVWQAKTGLPVGRFNKVVLADGKTMRDTQTGSDDGRRADTGVGR
Ga0335077_115345572	3300033158	Soil	KGNVEHWTREMGSTPASQLIGWTRTTLRPGDVVTLYVWQAKTHLTVGRFNKVVLADGKVMRDTQTGADNGGRADTGVGR
Ga0326723_0148614_839_1027	3300034090	Peat Soil	QLLGWTRTTLAYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTVMRDTQTGADDGGRADTGVRQ
Ga0364938_120092_313_510	3300034114	Sediment	VGAQLIGWTRTSLQPGDVVTLYVWKAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRADTGVRQ
Ga0364945_0264014_259_531	3300034115	Sediment	HPLIKADFKDEKGEIQHWTMEMGSTVSAQLLGWTRTSLAYGDVVTLYVWQAKTKVPVGRFNKVEFSDGTTMRDTQTGADDGGRADRDVRQ
Ga0364943_0194523_552_743	3300034354	Sediment	AQLIGWNRGSLAAGDVVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters