Metagenome / Metatranscriptome Family F064964

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064964
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	72 residues
Representative Sequence	MISGDRALRIEKQLAQLLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Number of Associated Samples	108
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.30 %
% of genes near scaffold ends (potentially truncated)	29.69 %
% of genes from short scaffolds (< 2000 bps)	89.84 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.969 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.312 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (39.844 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.23% β-sheet: 4.04% Coil/Unstructured: 72.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF03706	LPG_synthase_TM	9.38
PF07876	Dabb	9.38
PF07883	Cupin_2	6.25
PF00903	Glyoxalase	1.56
PF13565	HTH_32	1.56
PF02547	Queuosine_synth	1.56
PF05988	DUF899	1.56
PF01872	RibD_C	1.56
PF07366	SnoaL	1.56
PF03807	F420_oxidored	0.78
PF09587	PGA_cap	0.78
PF05103	DivIVA	0.78
PF08240	ADH_N	0.78
PF00694	Aconitase_C	0.78
PF07676	PD40	0.78
PF01479	S4	0.78
PF00211	Guanylate_cyc	0.78
PF08940	DUF1918	0.78
PF13302	Acetyltransf_3	0.78
PF01042	Ribonuc_L-PSP	0.78
PF04075	F420H2_quin_red	0.78
PF13088	BNR_2	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	9.38
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.56
COG0809	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	Translation, ribosomal structure and biogenesis [J]	1.56
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.56
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	1.56
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.78
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.97 %
Unclassified	root	N/A	7.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.97 %
Unclassified	root	N/A	7.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.97 %
Unclassified	root	N/A	7.03 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	70.31 %
Unclassified	root	N/A	7.03 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	66.41 %
Unclassified	root	N/A	7.03 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.22 %
Unclassified	root	N/A	7.03 %
Ignavibacteriae	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae	0.78 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	46.88 %
Unclassified	root	N/A	7.03 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	0.78 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.78 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.78 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.88 %
Unclassified	root	N/A	7.03 %
unclassified Ignavibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria	0.78 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.78 %
Heliobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae	0.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.88 %
Unclassified	root	N/A	7.03 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	0.78 %
Heliomicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium	0.78 %
Marmoricola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola	0.78 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.88 %
Unclassified	root	N/A	7.03 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	0.78 %
Marmoricola pocheonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	0.78 %
Heliomicrobium gestii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium gestii	0.78 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.88 %
Unclassified	root	N/A	7.03 %
Mycobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp.	0.78 %
Marmoricola pocheonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	0.78 %
Heliomicrobium gestii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium gestii	0.78 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_119864014	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1460	Open in IMG/M
3300003995\|Ga0055438_10046711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1105	Open in IMG/M
3300003996\|Ga0055467_10020799	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300003996\|Ga0055467_10303225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300003997\|Ga0055466_10058433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	973	Open in IMG/M
3300003998\|Ga0055472_10140451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	710	Open in IMG/M
3300004019\|Ga0055439_10139944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	746	Open in IMG/M
3300004114\|Ga0062593_102296481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300004463\|Ga0063356_100496145	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300005161\|Ga0066807_1013404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	781	Open in IMG/M
3300005329\|Ga0070683_100204926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1873	Open in IMG/M
3300005331\|Ga0070670_100593542	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300005339\|Ga0070660_100581478	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300005343\|Ga0070687_100974810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300005345\|Ga0070692_11332933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300005347\|Ga0070668_100480558	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300005356\|Ga0070674_101491550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300005445\|Ga0070708_100290928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1538	Open in IMG/M
3300005487\|Ga0074211_137928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M
3300005549\|Ga0070704_101810367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300005834\|Ga0068851_10766673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300005840\|Ga0068870_10124776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1487	Open in IMG/M
3300005841\|Ga0068863_100999626	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005843\|Ga0068860_101891941	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300006175\|Ga0070712_101312364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300006224\|Ga0079037_100595070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1072	Open in IMG/M
3300006871\|Ga0075434_100413986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1369	Open in IMG/M
3300006876\|Ga0079217_10028624	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
3300006894\|Ga0079215_10037693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1785	Open in IMG/M
3300006904\|Ga0075424_102379418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300006918\|Ga0079216_10239061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1028	Open in IMG/M
3300009094\|Ga0111539_11496807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300009147\|Ga0114129_10404539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1798	Open in IMG/M
3300009147\|Ga0114129_10706764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1295	Open in IMG/M
3300009147\|Ga0114129_11367181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300009147\|Ga0114129_11762166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	754	Open in IMG/M
3300009156\|Ga0111538_13764631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300009162\|Ga0075423_10592210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1168	Open in IMG/M
3300009167\|Ga0113563_12342909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300009177\|Ga0105248_11177268	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300009553\|Ga0105249_13505293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300010397\|Ga0134124_12250528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300012022\|Ga0120191_10070896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658	Open in IMG/M
3300012884\|Ga0157300_1068178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300012898\|Ga0157293_10304414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300012899\|Ga0157299_10034339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1054	Open in IMG/M
3300012915\|Ga0157302_10563420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300012958\|Ga0164299_10435117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	853	Open in IMG/M
3300012961\|Ga0164302_10053736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2015	Open in IMG/M
3300014267\|Ga0075313_1003229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3608	Open in IMG/M
3300014969\|Ga0157376_11293251	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300015077\|Ga0173483_10090599	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300015200\|Ga0173480_10311482	All Organisms → cellular organisms → Bacteria → Terrabacteria group	883	Open in IMG/M
3300015371\|Ga0132258_11477280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1717	Open in IMG/M
3300015371\|Ga0132258_13919976	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300015372\|Ga0132256_100557910	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300015372\|Ga0132256_102522910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300015372\|Ga0132256_102606600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300015373\|Ga0132257_100349356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1787	Open in IMG/M
3300015373\|Ga0132257_101065798	Not Available	1019	Open in IMG/M
3300015374\|Ga0132255_101486404	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300018063\|Ga0184637_10558510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300018073\|Ga0184624_10014689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2812	Open in IMG/M
3300018469\|Ga0190270_10128594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2010	Open in IMG/M
3300018469\|Ga0190270_10324158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1386	Open in IMG/M
3300018469\|Ga0190270_12578589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300018469\|Ga0190270_13083292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300018481\|Ga0190271_12962907	Not Available	570	Open in IMG/M
3300018481\|Ga0190271_13229059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300019356\|Ga0173481_10036682	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300021329\|Ga0210362_1477416	All Organisms → cellular organisms → Bacteria	7704	Open in IMG/M
3300022309\|Ga0224510_10729376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp.	572	Open in IMG/M
3300022309\|Ga0224510_10782415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300022756\|Ga0222622_10525413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300022756\|Ga0222622_10794244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300023263\|Ga0247800_1053922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300025164\|Ga0209521_10076643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2188	Open in IMG/M
3300025289\|Ga0209002_10173392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium gestii	1353	Open in IMG/M
3300025312\|Ga0209321_10061870	All Organisms → cellular organisms → Bacteria	2155	Open in IMG/M
3300025314\|Ga0209323_10059532	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	2613	Open in IMG/M
3300025319\|Ga0209520_10628211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300025559\|Ga0210087_1062963	Not Available	739	Open in IMG/M
3300025901\|Ga0207688_10248866	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300025918\|Ga0207662_10231786	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300025922\|Ga0207646_11111105	Not Available	695	Open in IMG/M
3300025926\|Ga0207659_11284613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300025938\|Ga0207704_10163119	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300025942\|Ga0207689_10327508	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300025944\|Ga0207661_10271652	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300025981\|Ga0207640_11528337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300026095\|Ga0207676_10138166	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
3300026375\|Ga0256803_1050834	Not Available	512	Open in IMG/M
3300026933\|Ga0207578_1002279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1143	Open in IMG/M
3300027560\|Ga0207981_1008274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1846	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10000221	All Organisms → cellular organisms → Bacteria	17399	Open in IMG/M
3300027843\|Ga0209798_10535670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300027870\|Ga0209023_10216386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	1260	Open in IMG/M
3300027886\|Ga0209486_10582594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300028589\|Ga0247818_11414310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300028597\|Ga0247820_10972710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300028717\|Ga0307298_10207307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300028720\|Ga0307317_10295829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300028875\|Ga0307289_10048352	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1698	Open in IMG/M
3300028878\|Ga0307278_10393402	Not Available	609	Open in IMG/M
3300028889\|Ga0247827_10322838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	910	Open in IMG/M
3300031170\|Ga0307498_10431163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300031199\|Ga0307495_10084884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	723	Open in IMG/M
3300031226\|Ga0307497_10116382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1065	Open in IMG/M
3300031226\|Ga0307497_10362077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	683	Open in IMG/M
3300031226\|Ga0307497_10411297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300031543\|Ga0318516_10127024	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300031562\|Ga0310886_10516303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	723	Open in IMG/M
3300031769\|Ga0318526_10335907	All Organisms → cellular organisms → Bacteria → Terrabacteria group	618	Open in IMG/M
3300031854\|Ga0310904_10715459	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300031873\|Ga0315297_10500691	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300031944\|Ga0310884_10274884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	930	Open in IMG/M
3300031997\|Ga0315278_10033502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4958	Open in IMG/M
3300032013\|Ga0310906_10334525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	979	Open in IMG/M
3300032013\|Ga0310906_10470295	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300032013\|Ga0310906_10578476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300032013\|Ga0310906_10678499	Not Available	718	Open in IMG/M
3300032068\|Ga0318553_10592144	Not Available	581	Open in IMG/M
3300032144\|Ga0315910_10526323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	913	Open in IMG/M
3300032401\|Ga0315275_12150506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300033550\|Ga0247829_11585462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300033551\|Ga0247830_10345486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1149	Open in IMG/M
3300034151\|Ga0364935_0241955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.66%
Host-Associated	Host-Associated	27.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.91%
Plants	Host-Associated → Plants	27.34%
Aquatic	Environmental → Aquatic	18.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.72%
Freshwater	Environmental → Aquatic → Freshwater	7.81%
Marine	Environmental → Aquatic → Marine	7.81%
Sediment	Environmental → Aquatic → Sediment	3.12%
Floodplain	Environmental → Terrestrial → Floodplain	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.81%
Loam	Environmental → Terrestrial → Soil → Loam	7.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.25%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.91%
Lake	Environmental → Aquatic → Freshwater → Lake	3.12%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.12%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.56%
Sediment	Environmental → Aquatic → Marine → Sediment	1.56%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.34%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.12%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.34%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.78%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.78%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.03%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.34%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.34%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.56%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.56%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.56%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.56%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.78%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.78%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.78%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005487	Sediment microbial communities from Lake Washington, Seattle, Washington, USA - Methanol enrichment	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021329	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.625 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026375	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS6	Environmental	Open in IMG/M
3300026933	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027799 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027870	Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1198640143	3300000956	Soil	VMISGQRAKEIEERLAHLLDVDVEDLRAYLAGNLTASKARRTGFRFVRGTHGGQYVRDPEGTDIVRAGMSVP*
Ga0055438_100467113	3300003995	Natural And Restored Wetlands	VISGDRAKEIEMRLADLIDVEIAELRDYLRGNVGESAARRTGFRFIRGTHGGQYVRDPEGTDLPSPRASLPG*
Ga0055467_100207992	3300003996	Natural And Restored Wetlands	MISGDRALKIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGQYVRDREGTDIRPAGVSVR*
Ga0055467_103032252	3300003996	Natural And Restored Wetlands	MISGDRAKEIEKRLADLLDVEIAELRDYLRGNIGESAARRTGFRFIRGTHGGQYVRDPEGTDIYR*
Ga0055466_100584332	3300003997	Natural And Restored Wetlands	MISGDRALKIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGQYVRDREGTDIRPTGVSVR*
Ga0055472_101404512	3300003998	Natural And Restored Wetlands	KIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGQYVRDREGTDIRPAGVSVR*
Ga0055439_101399441	3300004019	Natural And Restored Wetlands	MISGDRAKEIEKRLADLLDVEIAELHDFLRGNIGESAARRTGFRFIRGTHGGQYVRDPEGTDIPSSRASVPG*
Ga0062593_1022964812	3300004114	Soil	MISGDRALKIEEHLAQLLGVGVDELRDYLAGNIRTSSARRTGFRFVRGTHGGHYVRDREGTDIRPAGAYVR*
Ga0063356_1004961451	3300004463	Arabidopsis Thaliana Rhizosphere	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0066807_10134041	3300005161	Soil	MISGQRALELEKQLADLLDVEVDELRDYLAGNIGASSRRRTGFRFVRGTHGGQYVRDSDGTDIVRSGVSIP*
Ga0070683_1002049262	3300005329	Corn Rhizosphere	MINGDRALKIEKQLAQLLDIDVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070670_1005935422	3300005331	Switchgrass Rhizosphere	MINGDRALKIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070660_1005814782	3300005339	Corn Rhizosphere	MINGDRALKIEKQLAQLLDIDVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070687_1009748102	3300005343	Switchgrass Rhizosphere	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070692_113329331	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	SSSGALASISSMINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070668_1004805581	3300005347	Switchgrass Rhizosphere	MINGDRALKIEKQLAHLLDIEVDELRDYLAGNVRTSSTRPTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070674_1014915501	3300005356	Miscanthus Rhizosphere	MIGGDRAVQIERQLAQLLDVEVDELRDYLAGNIGTSSTRRTGFRFVRGTHGGQYVRDREGTDVAPAGVVRPLRSA*
Ga0070708_1002909282	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MISGDRALKIEKQLAQLLGVEVDELRDYLAGNIKTSSTRRTGLRFVRGTHGGHYVRDYEGTDIRPAGVSVR*
Ga0074211_1379282	3300005487	Sediment	GRLTQPRISGDRAKEIEKRLADLLDVEITELRDYLRGNIKESAARRTGFRFIRGTHGGQYVRDPEGTDTPSARVSVPG*
Ga0070704_1018103672	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0068851_107666732	3300005834	Corn Rhizosphere	MINGDRALKIEKQLAQLLDIDVDKLRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0068870_101247762	3300005840	Miscanthus Rhizosphere	MISGDRAAQIERQLAQLLAVEVDELRDYFAGNIRTSTTRRTGFRFVRGTHGGHYVRDRDGTDIAPAGVVRPLRPA*
Ga0068863_1009996262	3300005841	Switchgrass Rhizosphere	MINGDRALKIEKQLAHLLDIEVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0068860_1018919411	3300005843	Switchgrass Rhizosphere	IEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0070712_1013123641	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MISGQRAKEIEERLAHLLDVDVEDLRAYLAGNLTASKARRTGFRFVRGTHGGQYVRDPEGTDIVRAGMSVP*
Ga0079037_1005950703	3300006224	Freshwater Wetlands	MINGDRAKEIEKRLADLLDIEIAELRDYLQGNIKESAARRTGYRFIRGTHGGQYIRDAEGTDIPSVRVSVPG*
Ga0075434_1004139862	3300006871	Populus Rhizosphere	SLGGSSGAPASIIAMISGDQALKIEEQLAQLLGVDVDEVRDYLAGNIRTSSARRTGFRFVRGTHGGHYVRDREGTDIRPAGASVR*
Ga0079217_100286242	3300006876	Agricultural Soil	MISGDRALKIENQLAQLLDVEVGELRDYLAGSIRTNSTRRTGFRFVRGTHGGHYVRDREGTDMRPAGVSVR*
Ga0079215_100376932	3300006894	Agricultural Soil	MISGDRALKIENQLAQLLDVEVGELRDYLAGSIRTNSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0075424_1023794181	3300006904	Populus Rhizosphere	MISGDRAATIEKQLAQLLDVGVDELRDYLAGNIGTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0079216_102390612	3300006918	Agricultural Soil	MISGNRALKIEQQLAQLLEVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDMRPAGVSVR*
Ga0111539_114968073	3300009094	Populus Rhizosphere	RLSEAPRCRTGSSGAFASIVSVISGDRAVKIEEQLAHLLDVEVDELRDYLAGNIRTSTTRRTGFRFVRGTHGGHYVRDREGTDIAPAGVSARR*
Ga0114129_104045394	3300009147	Populus Rhizosphere	MISGDRALRIEKQLAQLLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0114129_107067641	3300009147	Populus Rhizosphere	VISGDRALKIEKELAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0114129_113671813	3300009147	Populus Rhizosphere	MISGDRALKIEKHLAQLLEVEVDELRDYLADNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRP
Ga0114129_117621662	3300009147	Populus Rhizosphere	MISGDRALKIEKELAQLLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0111538_137646311	3300009156	Populus Rhizosphere	VISGDRAVKIEEQLAHLLDVEVDELRDYLAGNIRTSTTRRTGFRFVRGTHGGHYVRDREGTDIAPAGVSARR*
Ga0075423_105922103	3300009162	Populus Rhizosphere	MISGDQALKIEEQLAQLLGVDVDEVRDYLAGNIRTSSARRTGFRFVRGTHGGHYVRDREGIDIRPAGVSVR*
Ga0113563_123429092	3300009167	Freshwater Wetlands	EIEKRLADLLDIEIAELRDYLQGNIKESAARRTGYRFIRGTHGGQYIRDAEGTDIPSVRVSVPG*
Ga0105248_111772682	3300009177	Switchgrass Rhizosphere	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRPTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0105249_135052932	3300009553	Switchgrass Rhizosphere	MISGDRALKIEKDLAQLLDVEVDELRDYLAGNIKTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0134124_122505282	3300010397	Terrestrial Soil	DRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0120191_100708962	3300012022	Terrestrial	MISGDRALKIETQLAHLLDVEVDELRDYLAGNIRTSGTRRTGFRFVRGTHGGHYVRDREGTDIRPPGVSVR*
Ga0157300_10681781	3300012884	Soil	MINGDRALKIENQLAQLLDIEVDELRDYLVGNVQTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0157293_103044141	3300012898	Soil	MINGDRALKIEKQLAHLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0157299_100343393	3300012899	Soil	ASISSMINGDRALKIENQLAQLLDIEVDELRDYLVGNVQTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0157302_105634201	3300012915	Soil	ISGDRALKIEEQLAQLLGVGVDELRDYLAGNIRTSGARRTGFRFVRGTHGGHYVRDREGTDIRPAGAYVR*
Ga0164299_104351172	3300012958	Soil	MISGQRAREIEERLAHLLEVDVEDLRAYLAGNITASKARRTGFRFVRGTHGGQYVRDPEGTDIVRAGVSVP*
Ga0164302_100537363	3300012961	Soil	MISGDQALKIEEQLAQLLGVDVDEVRDYLAGNIRTSTARRTGFRFVRGTHGGHYVRDREGTDIRPAGASVR*
Ga0075313_10032296	3300014267	Natural And Restored Wetlands	MISGHRALTIEKQLAQLLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIAPAGVSVR*
Ga0157376_112932512	3300014969	Miscanthus Rhizosphere	EKQLAQLLDIDVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0173483_100905992	3300015077	Soil	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIPVGVSVR*
Ga0173480_103114821	3300015200	Soil	MSSSAAFASIIPMISGQRGLEIEEGLSKLLGVEVAELRDYLAGNIEASSTRRTGFRFVRGTHGGQYVRDREGTDIVRPGASVP*
Ga0132258_114772803	3300015371	Arabidopsis Rhizosphere	MISGDRALAIEKQLARLLDVEVDELRDFLAGNVRTSSARRTGFRFVRGTHGGHYVRDREGIDIRPAGVSVR*
Ga0132258_139199762	3300015371	Arabidopsis Rhizosphere	EKQLAQLLDIEVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0132256_1005579103	3300015372	Arabidopsis Rhizosphere	MINGERALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR*
Ga0132256_1025229101	3300015372	Arabidopsis Rhizosphere	VIRGDRALGIEKRLAELLDVEVEELRDYLAGRIGESGKRRTGFRFIRGTHGGHYVRDREGTDTLPAAVSAP*
Ga0132256_1026066002	3300015372	Arabidopsis Rhizosphere	DEHIRGVRFNLVMISGQRAREIEERLAHLLEVDVEDLRAYLAGNITASKARRTGFRFVRGTHGGQYVRDPEGTDIVRAGMSVP*
Ga0132257_1003493561	3300015373	Arabidopsis Rhizosphere	MGGTSGAFASIIPMISGQRALELEERLAHLLVVDVEDLRAYLAGNITASKARRTGFRFVRGTHGGQYVRDPEGTDIVRAGVSVP*
Ga0132257_1010657982	3300015373	Arabidopsis Rhizosphere	MINGDRALKIEQQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTD
Ga0132255_1014864041	3300015374	Arabidopsis Rhizosphere	MISGDRALAIEKQLARLLDVEVDELRDFLAGNVRTSSARRTGFRFVRGTHGGHYVRDREGIDIRPAGV
Ga0184637_105585102	3300018063	Groundwater Sediment	MISGDRAKDIEKRLADLLDVEITELRDYLRGNIRESASRRTGFRFIRGTHGGQFVRDPEGTDMPSGRASVPG
Ga0184624_100146892	3300018073	Groundwater Sediment	MISGERATEIEQRLAELLEVEVDQLRDYLAGNIGASPTRRTGFRFVRGTHGGQYVRDRNGTDIVRNGLSVP
Ga0190270_101285941	3300018469	Soil	ISGDRALKIDQQLAQLLDVEVDELRDYLAGNIRTSRTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVAVR
Ga0190270_101558802	3300018469	Soil	MRECRVSESRSCWLAGSSGAFASIIPMISGDRALKIETQLAQLLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGADIRPAGVSAR
Ga0190270_103241583	3300018469	Soil	MLSGDRALTIEKQLAQLLGVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDTRPAGVAIR
Ga0190270_125785891	3300018469	Soil	IDKRLADLLDVEITELRDYLRGNIRESASRRTGFRFIRGTHGGQFVRDPEGTDMPSVRASVPG
Ga0190270_130832921	3300018469	Soil	MISGDRALKIDQQLAQLLEVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDM
Ga0190271_129629072	3300018481	Soil	MISGDRALKIDQQLAQLLEVEVDELRDYLAGNIRTSSTRRTGVRFVRGTHGGHYVRDREGTDMRPAGVSVR
Ga0190271_132290591	3300018481	Soil	MISGDRALEIEKQLAQVLGIEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDLRPAGVSVR
Ga0173481_100366823	3300019356	Soil	MINGDRALKIENQLAQLLDIEVDELRDYLAGNVRTSSTRPTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0210362_14774161	3300021329	Estuarine	MISGDRAKEIEKRLADLLDVEIAELRDYLRGNIRESTARRTGFRFIRGTHGGQYVHDPEGTDTPSVRVSVPG
Ga0224510_107293761	3300022309	Sediment	MISGERAKEIEMRLAGLLEVEVAELRDYLRGNVKESAGRRTGFRFIRGTHGGQYVRDPEGTDVLPARTSVPG
Ga0224510_107824152	3300022309	Sediment	MISGDRAKEIEKRLADLLDVETAELLDYLRGNIKESGARRTGFRFIRGTHGGQYVRDPEGTDVPSIRVSTPG
Ga0222622_105254132	3300022756	Groundwater Sediment	VLDISSGASASIVPMISGGRALEIEQRLAALLNVEVDQVRDYLAGNIGASTTRKTGFRFVRGTHGGQYVRDREGTDVVRSGVSVP
Ga0222622_107942442	3300022756	Groundwater Sediment	VLEVYDPVLDVSSGAFASIVPMISGERALEIEERLAELLGVGVDQLRDYLAGNIGASSTRRTGFRFVRGTHGGQYVRDREG
Ga0247800_10539221	3300023263	Soil	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIPVGVSVR
Ga0209521_100766432	3300025164	Soil	VRVCHNVRRGRFTQPMISGDRAKEIEKRLADLLDVEFAELRDYLRGNIKESAARRTGFRFIRGTHGGQYVRDPEGTDIPSVRAPVPG
Ga0209002_101733921	3300025289	Soil	AKEIEKRLADLLDVEFAELRDYLRGNIKESAARRTGFRFIRGTHGGQYVRDPEGTDIPSVRAPVPG
Ga0209321_100618703	3300025312	Soil	IEKRLADLLDVEFAELRDYLRGNIKESAARRTGFRFIRGTHGGQYVRDPEGTDIPSVRAPVPG
Ga0209323_100595323	3300025314	Soil	MISGDRAKEIEKRLADLLDVEFAELRDYLRGNIKESAARRTGFRFIRGTHGGQYVRDPEGTDIPSVRAPVPG
Ga0209520_106282111	3300025319	Soil	MISGDRAKEIEKRLADLLDVEFAELRDYLRGNIKESAARRTGFRFIRGTHGGQYVRDPEGTDIPS
Ga0210087_10629631	3300025559	Natural And Restored Wetlands	MISGDRALKIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGQYVRDREGTDIRPAGVSVR
Ga0207688_102488661	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207662_102317862	3300025918	Switchgrass Rhizosphere	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207646_111111052	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MISGDRALKIEKQLAQLLGVEVDELRDYLAGNIKTSSTRRTGLRFVRGTHGGHYVRDYEGTDIRPAGVSVR
Ga0207659_112846131	3300025926	Miscanthus Rhizosphere	MISGDRAAQIERQLAQLLAVEVDELRDYFAGNIRTSTTRRTGFRFVRGTHGGHYVRDRDGTDIAPAGVVRPLRPA
Ga0207704_101631193	3300025938	Miscanthus Rhizosphere	MINGDRALKIEKQLAHLLDIEVDELRDYLAGNVRTSSTRPTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207689_103275082	3300025942	Miscanthus Rhizosphere	MINGDRALKIEKQLAQLLDIDVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207661_102716523	3300025944	Corn Rhizosphere	MINGDRALKIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207640_115283372	3300025981	Corn Rhizosphere	MINGDRALKIEKQLAQLLDIDVDELRDYLAGNVRTSSTRQTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207676_101381661	3300026095	Switchgrass Rhizosphere	RWLASSSGALASISSMINGDRALKIEKQLAQLLDVEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0256803_10508342	3300026375	Sediment	MITGDRARKIEERLAQLLDVEIEELRDYLRGNIKENAARRTGLRFIRGTHGGQY
Ga0207578_10022792	3300026933	Soil	DRALRIEKHLAQLLEVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0207981_10082742	3300027560	Soil	MISGQRALELEKQLADLLDVEVDELRDYLAGNIGASSRRRTGFRFVRGTHGGQYVRDSDGTDIVRSGVSIP
(restricted) Ga0233416_100002212	3300027799	Sediment	MISGDRAKEIEKRLADLLDVEIAELLDYLRGNIKESGARRTGFRFIRGTHGGQYVRDPEGTDIPSVRVSTPG
Ga0209798_105356702	3300027843	Wetland Sediment	MISGDRAKEIEKRLAGLLDVEISELRDYLRGNIRESAARRTGFRFIRGTHGGQYVRDPEGTDVPSIRVSVPG
Ga0209023_102163862	3300027870	Freshwater And Sediment	VISGDRAKEIEKQLADLLGVEIAELRDYLRGNIKESAERRTGFRFIRGTHGGQYVRDPEGTDTPSARVSVPG
Ga0209486_105825941	3300027886	Agricultural Soil	GDRALKIENQLAQLLDVEVGELRDYLAGSIRTNSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0247818_114143102	3300028589	Soil	MISGDRALKIETQLAQVLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDVRPAGVSAR
Ga0247820_109727101	3300028597	Soil	MISGARALKIETQLAQLLDVEVDELRDYLAGNIGTRSTRRTGFRFVRGTHGGQYVRDREGTDTRPAGMSAR
Ga0307298_102073071	3300028717	Soil	QRLAALLNVEVDQVRDYLAGNIGASTTRKTGFRFVRGTHGGQYVRDREGTDVVRSGVSVP
Ga0307317_102958291	3300028720	Soil	VWSRSRCRELRFPEKAVLDISSGASASIVPMISGGRALEIEQRLAALLNVEVDQVRDYLAGNIGASTTRKTGFRFVRGTHGGQYVRDREGTDIVRPGASVP
Ga0307289_100483521	3300028875	Soil	GRALEIEQRLAALLNVEVDQVRDYLAGNIGASTTRKTGFRFVRGTHGGQYVRDREGTDVVRSGVSVP
Ga0307278_103934022	3300028878	Soil	MIPMISGDRALEIEKQLAQLLGVEVDQLRDYLAGNIRTSSTRRTGFRFVRGTHSGHYVRDREGTDISPAGVSVR
Ga0247827_103228382	3300028889	Soil	VISGDRAVKIEEQLAHLLDVEVDELRDYLAGNIRTSTTRRTGFRFVRGTHGGQYVRDREGTDIAPVGVSARR
Ga0307498_104311631	3300031170	Soil	IEKQLAQLLDVGVDELSDYLAGNIRTSSTRRTGFRFVRGTHGGHYIRDREGTDIRPAGVSVR
Ga0307495_100848841	3300031199	Soil	MAVPVDVLSGAFASIIPMISGQRALEIEEQLTQLLHVEVDELRDYLAGNIRASSARRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0307497_101163822	3300031226	Soil	MAVPVDVSSGAFASIIPMVSGQQALKIEEQLAHLLHVEVDELRDYLAGNIGASSTRRTGFRFVRGTHGGQYVRDREGTDIVRPGASAP
Ga0307497_103620772	3300031226	Soil	MYRLACSSGARASITPMISGDRALKIEKQLAQLLDVGVDELSDYLAGNIRTSSTRRTGFRFVRGTHGGHYIRDREGTDIRPAGVSVR
Ga0307497_104112972	3300031226	Soil	VISGNRAKEIEERLAELLDVEIAELRDYLRGNVGESASRRTGFRLIRGTHGGQYVRDPEGTDIPSARVSVPG
Ga0318516_101270242	3300031543	Soil	VIKGDRAREIEERLAGLIEVEVRELRDYLAGNIGESRTRRTGIRFRRGTHGGQYVRDPEGTDIPPVGVSVL
Ga0310886_105163032	3300031562	Soil	ALKIETQLAQLLDVEVDELRDYLAGNIGTSSTRRTGFRFVRGTHGGQYVRDREGTDTRPAGMSAR
Ga0318526_103359072	3300031769	Soil	GDRAREIEERLARLIEVEVKELRDYLAGNIGESRTRRTGIRFRRGTHGGQYVRDPEGTDIPPVGVSVL
Ga0310904_107154591	3300031854	Soil	MINGERALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIRPAGVSVR
Ga0315297_105006911	3300031873	Sediment	VISGDRAKEIEERLADLLDVEITELRDYLRGNIKEGAARRTGFRFIRGTHGGQYVRDPDG
Ga0310884_102748842	3300031944	Soil	MINGDRALKIEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGQYVRDREGTDTRPAGMSAR
Ga0315278_100335025	3300031997	Sediment	MISGDHAKEIEQRLADLLDVEIAELRDYLRGNIRESATRRTGFRFIRGTHGGQYVRDPEGTDTLAVRVSVPG
Ga0310906_103345251	3300032013	Soil	MISGARALKIETQLAQLLDVEVDELRDYLAGNIGTSSTRRTGFRFVRGTHGGQYVRDREGTDTRPAGMSAR
Ga0310906_104702952	3300032013	Soil	MISGDRAVKIEEQLAHLLDVEVDELRDYLAGNIRTSTTRRTGFRFVRGTHGGQYVRDREGTDIAPAGVSARR
Ga0310906_105784762	3300032013	Soil	MINGDRALKMEKQLAQLLDIEVDELRDYLAGNVRTSSTRRTGFRFVRGTHGGHYVRDREGTDIPAGVSVR
Ga0310906_106784992	3300032013	Soil	VISGDRALKIETQLAQVLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDRE
Ga0318553_105921441	3300032068	Soil	VIKGDRAREIEERLARLIEVEVKELRDYLAGNIGESRTRRTGIRFRRGTHGGQYVRDPEGTDIPPMGVSVL
Ga0315910_105263232	3300032144	Soil	VIDAEKAARIEQRLAALVEVEVDELRDYLRGNLRAGSARRTGIRFVRGTHGGGYVRDPEGTDVPPSGYSVPA
Ga0315275_121505062	3300032401	Sediment	VISGDCAKEIEERLADLLDVEITELRDYLRGNIKEGAARRTGFRFIRGTHGGQYVRDPEGTDIPSARASVPG
Ga0247829_115854621	3300033550	Soil	ALKIETQLAQVLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDVRPAGVSAR
Ga0247830_103454862	3300033551	Soil	VISGDRALKIETQLAQVLDVEVDELRDYLAGNIRTSSTRRTGFRFVRGTHGGHYVRDREGTDVRPAGVSAR
Ga0364935_0241955_2_193	3300034151	Sediment	VKIEEQLARLLDVEVDELRDYLAGNIRTNSTRRTGFRFVRGTHGGQYVPDREGTDIAPAGASAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters