Metagenome / Metatranscriptome Family F064960

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064960
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	66 residues
Representative Sequence	MVGGTNISQFRTLLNDATPEDLVTIAPLLFSRIGTLDQSQQDRFIQEVKSDPQAKRVFEKMQSYTH
Number of Associated Samples	100
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.91 %
% of genes near scaffold ends (potentially truncated)	21.88 %
% of genes from short scaffolds (< 2000 bps)	83.59 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.031 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.969 % of family members)
Environment Ontology (ENVO)	Unclassified (34.375 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.969 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.26% β-sheet: 0.00% Coil/Unstructured: 45.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00230	MIP	1.56
PF00990	GGDEF	1.56
PF02397	Bac_transf	1.56
PF14354	Lar_restr_allev	0.78
PF11188	DUF2975	0.78
PF00563	EAL	0.78
PF01337	Barstar	0.78
PF00079	Serpin	0.78
PF14329	DUF4386	0.78
PF12840	HTH_20	0.78
PF00753	Lactamase_B	0.78
PF13340	DUF4096	0.78
PF13676	TIR_2	0.78
PF12697	Abhydrolase_6	0.78
PF05960	DUF885	0.78
PF03720	UDPG_MGDP_dh_C	0.78
PF09832	DUF2059	0.78
PF13415	Kelch_3	0.78
PF04773	FecR	0.78
PF00854	PTR2	0.78
PF05721	PhyH	0.78
PF00155	Aminotran_1_2	0.78
PF02674	Colicin_V	0.78
PF00380	Ribosomal_S9	0.78
PF13792	Obsolete Pfam Family	0.78
PF00850	Hist_deacetyl	0.78
PF06627	DUF1153	0.78
PF13474	SnoaL_3	0.78
PF02390	Methyltransf_4	0.78
PF04357	TamB	0.78
PF07452	CHRD	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.56
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	1.56
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	1.56
COG2732	Barstar, RNAse (barnase) inhibitor	Transcription [K]	0.78
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.78
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.78
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.78
COG4826	Serine protease inhibitor	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.78
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.78
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.78
COG3104	Dipeptide/tripeptide permease	Amino acid transport and metabolism [E]	0.78
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.78
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.78
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.78
COG1286	Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0220	tRNA G46 N7-methylase TrmB	Translation, ribosomal structure and biogenesis [J]	0.78
COG0103	Ribosomal protein S9	Translation, ribosomal structure and biogenesis [J]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
All Organisms	root	All Organisms	42.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
cellular organisms	root	All Organisms → cellular organisms	42.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.06 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.50 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	27.34 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.56 %
Hyphomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales	0.78 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	24.22 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1.56 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	0.78 %
Hyphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	17.97 %
Parasphingopyxis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Parasphingopyxis	1.56 %
Candidatus Viadribacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Candidatus Viadribacter	0.78 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.78 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.78 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	6.25 %
unclassified Parasphingopyxis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Parasphingopyxis → unclassified Parasphingopyxis	1.56 %
Candidatus Viadribacter manganicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Candidatus Viadribacter → Candidatus Viadribacter manganicus	0.78 %
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	0.78 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.78 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.78 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	3.91 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2.34 %
Parasphingopyxis sp. CP4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Parasphingopyxis → unclassified Parasphingopyxis → Parasphingopyxis sp. CP4	1.56 %
Candidatus Viadribacter manganicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Candidatus Viadribacter → Candidatus Viadribacter manganicus	0.78 %
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	0.78 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.78 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.78 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02GQNXL	Not Available	502	Open in IMG/M
2228664022\|INPgaii200_c0845212	Not Available	787	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100594666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1382	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101414932	Not Available	1005	Open in IMG/M
3300000550\|F24TB_10226482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2766	Open in IMG/M
3300000750\|JGI12272J11983_1092727	Not Available	525	Open in IMG/M
3300000955\|JGI1027J12803_103017862	Not Available	831	Open in IMG/M
3300000955\|JGI1027J12803_104580229	Not Available	539	Open in IMG/M
3300002886\|JGI25612J43240_1001916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2578	Open in IMG/M
3300003312\|P12013IDBA_1008754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	5093	Open in IMG/M
3300003312\|P12013IDBA_1030276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1703	Open in IMG/M
3300003312\|P12013IDBA_1109366	Not Available	1341	Open in IMG/M
3300004114\|Ga0062593_100097453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2059	Open in IMG/M
3300004114\|Ga0062593_101063743	Not Available	836	Open in IMG/M
3300004463\|Ga0063356_100892965	Not Available	1254	Open in IMG/M
3300004463\|Ga0063356_103533073	Not Available	673	Open in IMG/M
3300004479\|Ga0062595_100122641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1443	Open in IMG/M
3300005045\|Ga0071328_174114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3276	Open in IMG/M
3300005093\|Ga0062594_103149092	Not Available	516	Open in IMG/M
3300005172\|Ga0066683_10252206	Not Available	1094	Open in IMG/M
3300005175\|Ga0066673_10602484	Not Available	639	Open in IMG/M
3300005293\|Ga0065715_10226569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1250	Open in IMG/M
3300005332\|Ga0066388_100441528	Not Available	1944	Open in IMG/M
3300005355\|Ga0070671_100548900	Not Available	996	Open in IMG/M
3300005364\|Ga0070673_100361988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1290	Open in IMG/M
3300005367\|Ga0070667_100021511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	5354	Open in IMG/M
3300005367\|Ga0070667_101583706	Not Available	616	Open in IMG/M
3300005435\|Ga0070714_101442394	Not Available	672	Open in IMG/M
3300005436\|Ga0070713_100945684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	830	Open in IMG/M
3300005437\|Ga0070710_10610796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	760	Open in IMG/M
3300005440\|Ga0070705_100106725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1781	Open in IMG/M
3300005440\|Ga0070705_100732119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	780	Open in IMG/M
3300005458\|Ga0070681_10539232	All Organisms → cellular organisms → Bacteria → Proteobacteria	1080	Open in IMG/M
3300005542\|Ga0070732_10217288	Not Available	1143	Open in IMG/M
3300005543\|Ga0070672_100745622	Not Available	859	Open in IMG/M
3300005543\|Ga0070672_101023919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	732	Open in IMG/M
3300005564\|Ga0070664_102114842	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_100190656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3045	Open in IMG/M
3300005764\|Ga0066903_102751882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	954	Open in IMG/M
3300005841\|Ga0068863_101966122	Not Available	595	Open in IMG/M
3300005842\|Ga0068858_101539081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	656	Open in IMG/M
3300005844\|Ga0068862_100095085	Not Available	2599	Open in IMG/M
3300006038\|Ga0075365_10291490	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300006175\|Ga0070712_101539921	Not Available	581	Open in IMG/M
3300006755\|Ga0079222_10780349	Not Available	775	Open in IMG/M
3300006806\|Ga0079220_10862614	Not Available	696	Open in IMG/M
3300006852\|Ga0075433_10059384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	3346	Open in IMG/M
3300006852\|Ga0075433_10064003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3223	Open in IMG/M
3300006904\|Ga0075424_101315970	Not Available	768	Open in IMG/M
3300006918\|Ga0079216_10282994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300010040\|Ga0126308_10066524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Candidatus Viadribacter → Candidatus Viadribacter manganicus	2136	Open in IMG/M
3300010110\|Ga0126316_1086653	Not Available	524	Open in IMG/M
3300010361\|Ga0126378_11362859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	803	Open in IMG/M
3300010366\|Ga0126379_11828452	Not Available	711	Open in IMG/M
3300010376\|Ga0126381_103812337	Not Available	589	Open in IMG/M
3300012092\|Ga0136621_1002466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7674	Open in IMG/M
3300012093\|Ga0136632_10171558	Not Available	994	Open in IMG/M
3300012200\|Ga0137382_10695939	Not Available	728	Open in IMG/M
3300012354\|Ga0137366_10237164	Not Available	1355	Open in IMG/M
3300012680\|Ga0136612_10219367	Not Available	967	Open in IMG/M
3300012682\|Ga0136611_10496558	Not Available	769	Open in IMG/M
3300012684\|Ga0136614_10872975	Not Available	624	Open in IMG/M
3300012684\|Ga0136614_10896896	Not Available	614	Open in IMG/M
3300012923\|Ga0137359_10734690	Not Available	858	Open in IMG/M
3300012924\|Ga0137413_11434270	Not Available	559	Open in IMG/M
3300014829\|Ga0120104_1014280	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300015161\|Ga0167623_1029797	Not Available	1263	Open in IMG/M
3300015201\|Ga0173478_10619586	Not Available	565	Open in IMG/M
3300015209\|Ga0167629_1036987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1700	Open in IMG/M
3300015371\|Ga0132258_12057171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436	Open in IMG/M
3300015372\|Ga0132256_100501193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1325	Open in IMG/M
3300017787\|Ga0183260_10070077	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2571	Open in IMG/M
3300017787\|Ga0183260_10350816	Not Available	991	Open in IMG/M
3300017787\|Ga0183260_10971149	Not Available	524	Open in IMG/M
3300017789\|Ga0136617_10152142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1974	Open in IMG/M
3300017789\|Ga0136617_10587586	Not Available	875	Open in IMG/M
3300017930\|Ga0187825_10408680	Not Available	523	Open in IMG/M
3300018429\|Ga0190272_11249090	Not Available	734	Open in IMG/M
3300018429\|Ga0190272_11313989	Not Available	720	Open in IMG/M
3300018429\|Ga0190272_11670772	Not Available	657	Open in IMG/M
3300018429\|Ga0190272_12006814	Not Available	613	Open in IMG/M
3300018429\|Ga0190272_12745513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	542	Open in IMG/M
3300018469\|Ga0190270_10371721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1310	Open in IMG/M
3300018469\|Ga0190270_10475335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1183	Open in IMG/M
3300018476\|Ga0190274_11893594	Not Available	692	Open in IMG/M
3300018476\|Ga0190274_13164467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300018476\|Ga0190274_13694555	Not Available	517	Open in IMG/M
3300018482\|Ga0066669_10231163	Not Available	1445	Open in IMG/M
3300018920\|Ga0190273_11662150	Not Available	574	Open in IMG/M
3300018920\|Ga0190273_12242266	Not Available	514	Open in IMG/M
3300019132\|Ga0193604_1034725	Not Available	741	Open in IMG/M
3300019259\|Ga0184646_1169790	Not Available	872	Open in IMG/M
3300019362\|Ga0173479_10476742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	623	Open in IMG/M
3300019377\|Ga0190264_11181812	Not Available	633	Open in IMG/M
3300019377\|Ga0190264_12058144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	526	Open in IMG/M
3300019878\|Ga0193715_1081740	Not Available	670	Open in IMG/M
3300019888\|Ga0193751_1000122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	70468	Open in IMG/M
3300020001\|Ga0193731_1011325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2295	Open in IMG/M
3300022534\|Ga0224452_1134209	Not Available	762	Open in IMG/M
3300022756\|Ga0222622_10697055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	738	Open in IMG/M
3300025167\|Ga0209642_10773956	Not Available	505	Open in IMG/M
3300025911\|Ga0207654_10388248	Not Available	968	Open in IMG/M
3300025918\|Ga0207662_11086220	Not Available	569	Open in IMG/M
3300025919\|Ga0207657_10103157	Not Available	2364	Open in IMG/M
3300025923\|Ga0207681_10669337	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300025925\|Ga0207650_11222942	Not Available	639	Open in IMG/M
3300025931\|Ga0207644_10428706	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300025931\|Ga0207644_11033861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	690	Open in IMG/M
3300025960\|Ga0207651_10146907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1830	Open in IMG/M
3300025960\|Ga0207651_11603093	Not Available	586	Open in IMG/M
3300025986\|Ga0207658_11255308	Not Available	677	Open in IMG/M
3300026088\|Ga0207641_11200856	Not Available	758	Open in IMG/M
3300026319\|Ga0209647_1007248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	7825	Open in IMG/M
3300027638\|Ga0208612_1018012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	2311	Open in IMG/M
3300027691\|Ga0209485_1079095	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300027842\|Ga0209580_10413376	Not Available	672	Open in IMG/M
3300030903\|Ga0308206_1124754	Not Available	599	Open in IMG/M
3300030903\|Ga0308206_1127310	Not Available	594	Open in IMG/M
3300031091\|Ga0308201_10268862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Parasphingopyxis → unclassified Parasphingopyxis → Parasphingopyxis sp. CP4	595	Open in IMG/M
3300031092\|Ga0308204_10208228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Parasphingopyxis → unclassified Parasphingopyxis → Parasphingopyxis sp. CP4	613	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1000134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	9644	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10000118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	14722	Open in IMG/M
3300031228\|Ga0299914_10426135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1155	Open in IMG/M
3300031548\|Ga0307408_100114656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2077	Open in IMG/M
3300031548\|Ga0307408_102038919	Not Available	552	Open in IMG/M
3300031731\|Ga0307405_10530663	Not Available	949	Open in IMG/M
3300031740\|Ga0307468_102309135	Not Available	523	Open in IMG/M
3300031824\|Ga0307413_11293243	Not Available	638	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.22%
Host-Associated	Host-Associated	25.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.94%
Plants	Host-Associated → Plants	25.78%
Aquatic	Environmental → Aquatic	13.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.75%
Freshwater	Environmental → Aquatic → Freshwater	11.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.25%
Sediment	Environmental → Aquatic → Sediment	1.56%
Roots	Host-Associated → Plants → Roots	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	10.94%
Ice	Environmental → Aquatic → Freshwater → Ice	9.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.69%
Sand	Environmental → Terrestrial → Soil → Sand	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.78%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	9.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.56%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.56%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.78%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.78%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.78%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.97%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	8.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.12%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.34%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	2.34%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.34%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.56%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.56%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.56%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.56%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.56%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.78%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015209	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019132	Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_06258220	2170459003	Grass Soil	RDIPATGDSKMVAGTNIGQFRSLLNEAPPEDLATIAPLLFSRIGTLGQSQQERVIQEIKRDPQAKIVFEKMQSFAH
INPgaii200_08452122	2228664022	Soil	MVLDPAKTSQFRDWIKDAQPDDVVKIAPQFFSRIGTLEKSHQERLIQDVQRDPQAKRVFEKMQSFAH
INPhiseqgaiiFebDRAFT_1005946663	3300000364	Soil	MVAGTNISQFRTWLNDAAPEDIVTISPLLFSRIGTLDQSQQDRVIQEVRSDPQAKRVFEKMQTYAH*
INPhiseqgaiiFebDRAFT_1014149323	3300000364	Soil	MVLDPAKTSQFRDWIKDAQPDDVVKIAPQFFSRIGTLEKSHQERLIQDVQRDPQAKRVFEKMQSFAH*
F24TB_102264825	3300000550	Soil	MVLDPAKTSQFRDWIKDAQPDDVVKIAPQFFSRIGTLEKNHQERLFQDVQRDPQAKRVFEKMQSFAH*
JGI12272J11983_10927271	3300000750	Soil	MVAENNASQFRSWINTAQPEDLLTIAPVLFNRIGTLDQRHQERFIQEVQRDPQTKRMFEQMQSYSR*
JGI1027J12803_1030178622	3300000955	Soil	MIAGTNISQFRTFINEATPEDLVAIASLLFSRIGTLDQSHQQTLIQKIQSDPQAKGVFNKLQTVGQ*
JGI1027J12803_1045802291	3300000955	Soil	MVTEMNISQFKTWLNDARPDDLVTIAPLLFSRIGTLDKTHQERFIKEIQQNPQAKTVFQKLQ
JGI25612J43240_10019162	3300002886	Grasslands Soil	MVGGTNLSQFRTLLNDATPDDVVTIAPLLFSRIGTLDQPHQDRFIQEVRSDPQAKRAFEKIQSFSQ*
P12013IDBA_10087542	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MVAETNISQFRNWLNDAPPEDLVKIAPLLFNRIGTLDQAQQDRVIKEVQSDPQARSVFDKMKTFTH*
P12013IDBA_10302762	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MVAGGNISQFRSWLNEAPPEDLVTIAPLVFSRIGTLDQAQQDRFIKEVQSDPQAKRVFEKMKSSAH*
P12013IDBA_11093663	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MVAGGNISQFRSWLNEAPPEDLVTIAPLLFSRIGTLDQAQQDRFIKEVQSDPQAKRVFEKMKSSAH*
Ga0062593_1000974534	3300004114	Soil	MVGGPNISQFRTWLNDAAPEDLVTIAPLLFSRIGTLDQTHQDRFIQQVKSDPQAKLIFDKLQTVSQ*
Ga0062593_1010637432	3300004114	Soil	MVLDPTKSSQFRSWIKDAPPEDIVTIAPALFSRVGTLDKNHQERFIQEVQRDPQARSVFEKMKDYAH*
Ga0063356_1008929652	3300004463	Arabidopsis Thaliana Rhizosphere	MIAGTNINQFRTWLNDASPEDLVSIAPVLFSRVGTLDQRHQERLIQEFQRDPQAKRLFEKMQTLSR*
Ga0063356_1035330732	3300004463	Arabidopsis Thaliana Rhizosphere	MVTDTNIGQFRTFIKDAQPEELVTVAPLLFSRIGTLEPRHQEKFIQEVQSDPQAKRVFDKLLSFTQ*
Ga0062595_1001226411	3300004479	Soil	TLLNDAPPEDLVTIAPLLFSRIGTLGQSQQESVIQEIQRDPEAKRVFEKIKSFTH*
Ga0071328_1741141	3300005045	Permafrost	MLDPTNTNQFRTWIKDAPPEDVVTIAPLLFSRIGTLEQSQQERFIKEVQNDPQAKRVFEKMQTFTQ*
Ga0062594_1031490921	3300005093	Soil	MVAGTNISQFRSLLNEATPDDLVTIAPLLFNRIGTLDQSKQDLLIQQIKSDPQAKTVFEKMKTFAH
Ga0066683_102522062	3300005172	Soil	MVAGTNISQFRTLLNDAPAEDLVTIAPLLFSRIGTLNESQQESVIQEVQRDPQAKRVFEKMKSYTH*
Ga0066673_106024841	3300005175	Soil	MVGGTNISQFRTLLNDATPEDLVTIAPLLFSRIGTLDQSQQDRFIQEVKSDPQAKRVFEKMQSYTH*
Ga0065715_102265692	3300005293	Miscanthus Rhizosphere	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKIKSFTH*
Ga0066388_1004415282	3300005332	Tropical Forest Soil	MVAGTNISQFRTLLNEAPPEDLVTIAPLLFNRIGTLGQSQQERVVQEIRSDPEAKRVFEKIQSFTH*
Ga0070671_1005489002	3300005355	Switchgrass Rhizosphere	MVAGTDISQFRSFIQNASPEDLVTIAPLLFSRIGTLDQSHQDRFIKQVQSDPQAKRVLEKVQTL*
Ga0070673_1003619883	3300005364	Switchgrass Rhizosphere	TLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKIKSFTH*
Ga0070667_1000215114	3300005367	Switchgrass Rhizosphere	MVAGTNISQFRSLLNEATPDDLVTIAPLLFNRIGTLDQSKQDLLIQQIKSDPQAKTVFEKMKTFAH*
Ga0070667_1015837061	3300005367	Switchgrass Rhizosphere	MVGGPNISQFRTWLNDAAPQDLVTIAPLLFSRIGTLDQSHQDRFIQEVKGDPQAKRVFEKMQSYAH*
Ga0070714_1014423942	3300005435	Agricultural Soil	MVTEMNISQFKTWLNDARPDDLVTIAPLLFSRIGTLDKTHQERFIQEIQQNPQAKGVFQKLQVANQ*
Ga0070713_1009456841	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MVAGANISQFRNLLNEATPEDLVTIAPLLLSRIGTLDQSKQEQVIQQVKSDPQAKQIFEKMKTFTH*
Ga0070710_106107961	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MVAGANISQFRSLLNEATPEDLVTITPLLLSRIGTLDQSKQEQVIQQVKSDPQAKQVFEKMKTFTH*
Ga0070705_1001067251	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MVLETASTDQFRTWIKGAPPDDLVTIAPLLFSRIGTLEQSHQERFIQEVQRDPQAKRVFEKMQSFTH*
Ga0070705_1007321191	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFSRIGTLGQSQQESVIQEIQRDPEAKRVFEKIKSFTH*
Ga0070681_105392322	3300005458	Corn Rhizosphere	MVAGANISQFRSLLNEATPEDLVTIAPLLLSRIGTLDQNQQDQFIQQVKSDPQAKTVFERMKTFTH*
Ga0070732_102172882	3300005542	Surface Soil	MIAGTNISQFRNFLTDATPEDLVTIAPLVFSRIGTLDQSHQERLIQNIQSDPQAKSVFSKLQTVGR*
Ga0070672_1007456221	3300005543	Miscanthus Rhizosphere	MVTEMNISQFRSWLKNAPPEDLVTIAPQLFSRIGTLDDRHQDRFIQEVQNNPQAKSLFRKLQTVS*
Ga0070672_1010239192	3300005543	Miscanthus Rhizosphere	LLNEATPDDLVTIAPLLFNRIGTLDQSKQDLLIQQIKSDPQAKTVFEKMKTFAH*
Ga0070664_1021148421	3300005564	Corn Rhizosphere	MVAGTNISQFRSLLNEATPDDLVAIAPLLFNRIGTLDQSKQDQLIQQIKSDPQAKTVFEKMKTFTQ*
Ga0066903_1001906564	3300005764	Tropical Forest Soil	MKTEMNISQFRSWLNEAQPDDLVTIAPLMLNTIGTLDQRHQERFIEEVKSNPQAKSLFAKLSTLTQ*
Ga0066903_1027518822	3300005764	Tropical Forest Soil	MMTEMNISQFRNWLNDTQPDDLATITPLLFSRIGTLDQRHQERIIEEVQSNPQAKSFFA
Ga0068863_1019661221	3300005841	Switchgrass Rhizosphere	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEAKRVFEKIKSFTH*
Ga0068858_1015390812	3300005842	Switchgrass Rhizosphere	LLNDAPPEDLVTIAPLLFSRIGTLGQSQQESVIQEIQRDPEAKRVFEKIKSFTH*
Ga0068862_1000950852	3300005844	Switchgrass Rhizosphere	MVGGTNISQFRTWLNDAAPEDLVTIAPLLFSRLGTLGQTQQDQVIQEIRRDPQAKIVFEKMKSFTH*
Ga0075365_102914902	3300006038	Populus Endosphere	MVTGTNISQFRTLLNEAPPEDLATIAPLLFTRIGTLGQDQQDRVIQEIQRDPQAKIVFEKMKSFTH*
Ga0070712_1015399211	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVAGANISQFRNLLNEATPEDLVTIAPLLLSRIGTLDQSKQEQVIQQVKSDPQAKQVFEKMKTFTH*
Ga0079222_107803491	3300006755	Agricultural Soil	MVTDTNISQFKSFVQTAPPEDLLTIAPLLFSRIGTLDQNQQERFIKQVQSDPQAKRVFEKLQTF*
Ga0079220_108626141	3300006806	Agricultural Soil	MVAGTNISQFRTLLNEAPPEDLATIAPLLFNRIGTLGQSQQEQVIQEIQRDPQAKSVFEKMKSFTH*
Ga0075433_100593848	3300006852	Populus Rhizosphere	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKIKSF
Ga0075433_100640031	3300006852	Populus Rhizosphere	KPFQLLRGIPARRLEMVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKIKSFTH*
Ga0075424_1013159702	3300006904	Populus Rhizosphere	MVTEMNISQFRSWLSNAPPEDLVTIAPQLFSRIGTLDERHQDRFIQEVHNNPQAKSLFRKLQTVS*
Ga0079216_102829942	3300006918	Agricultural Soil	MVLDPTSTNQFRTWIKDAPPEELVSVAPLLFSRIGTLDQAQQDRFIDEVHRDPQAKRIFDRMKSFSQ*
Ga0126308_100665242	3300010040	Serpentine Soil	MVTGTNISQFRTFINDATPDDLVTIAPLLFSRIGTLDQTQQDRFVQQIKSDPQAKSVFEKLQTTAH*
Ga0126316_10866531	3300010110	Soil	IPARRLEMVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKFKSFTH*
Ga0126378_113628592	3300010361	Tropical Forest Soil	MVAGANISQFRSLLNEATPEDLVTIAPLVLSRIGTLDESKQERVIQQVKSDPQAKQVFEKMKTFTH*
Ga0126379_118284522	3300010366	Tropical Forest Soil	MMTEMNISQFRNWLNDTQPDDLATITPLLFSRIGTLDQRHQERIIEEVQSNPQAKSFFAKLNTFSQ*
Ga0126381_1038123371	3300010376	Tropical Forest Soil	MVAGANISQFRSVLNEATPEDLVTIAPLVLSRIGTLDESKQERVIQQVKSDPQAKQVFEKMKTFTH*
Ga0136621_100246610	3300012092	Polar Desert Sand	MVLDNTSASQFRTWIKDAPPEDLVTIAPLLFSRIGTLEQSHQERFIQEVQRDPQAKRVFEKMQSYTH*
Ga0136632_101715583	3300012093	Polar Desert Sand	MVLDNTSASQFRTWIKDAPPEDLVTIAPLLFSRIGTLEPRDQDRFIQEVQRDPQAKRVFEKMQSSAR*
Ga0137382_106959391	3300012200	Vadose Zone Soil	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFSRIGTLNESQQESVIQEVQRDPQAKRVFEKMKSYTH*
Ga0137366_102371642	3300012354	Vadose Zone Soil	MVAGTNISQFRTLLNDAPAEDLVTIAPLLFSRIGTLNESEQESVIQEVQRDPQAKRVLEKMKSYTH*
Ga0136612_102193671	3300012680	Polar Desert Sand	MVAETNTSQFRTWINDAQPDELLTIAPMLFSRIGTLDQRHQERFVEEVRRNPQAKRMFEQMQSSSR*
Ga0136611_104965581	3300012682	Polar Desert Sand	MVAETNTSQFRTWINDAQPDELLTIAPMLFSRIGTLDQRHQERFVDEVRRNPEAKRMFEQLQSSSR*
Ga0136614_108729751	3300012684	Polar Desert Sand	MVLDRPNASQFRTWIDDAPPEDLLTIAPLLFSRIGTLEPRDQDRLIEEVRRDPQAKRCNPLTDRRKVDTG
Ga0136614_108968962	3300012684	Polar Desert Sand	MVADNNASQFRSWMDTAQPDDLLTIAPVLFRRIGSLDQRQQERFIEKVQSDPQAKRLFEQMQSYSR*
Ga0137359_107346901	3300012923	Vadose Zone Soil	MVGGTNISQFRTLLNDAAPEDLVAIAPLLFSRIGTLDQSQQERFIQEVKSDPQAKRVFEKMQSFTH*
Ga0137413_114342701	3300012924	Vadose Zone Soil	MPAKGEIEMVGTTNIGQFRTMLNDAAPEDLVTIAPLLFSRIGTLDQSQQDRFIQEVKSDPQAKRVFDKLQGVSH*
Ga0120104_10142801	3300014829	Permafrost	MVLDPTNTSQFRTWIKDAPPEDVLTIAPLLFSRIGTLDQSHQERFIKEVQSDPQAKRVFEKIQSYAR*
Ga0167623_10297971	3300015161	Glacier Forefield Soil	MVLDPTNASKFRTWVKDAPPEELMSVAPLLISRIGTLEQSHQDRFIKEVQSDPQAKRVFEKAKSYAH*
Ga0173478_106195862	3300015201	Soil	VLKVAGIMPALRRLKMVFDPTNTNQVRTWIKDAPPEELLTIAPVLFNRIGTLDQNHQERFVKDMKRDPQTKRVFEKIQSFA*
Ga0167629_10369871	3300015209	Glacier Forefield Soil	PTNASKFRTWVKDAPPEELMSVAPLLISRIGTLEQSHQDRFIKEVQSDPQAKRVFDKMQSYAD*
Ga0132258_120571711	3300015371	Arabidopsis Rhizosphere	MVAGTNISQFRTLLNEAPPEDLVTIAPLLFNRIGTLGQSQQERVIQEIRRDPQAKSAFEKLQSFTH*
Ga0132256_1005011931	3300015372	Arabidopsis Rhizosphere	GRLAMVAGTNISQFRSLLNEATPDDLVTIAPLLFNSIGTLDQSKQDLLIQQIKSDPQAKTVFEKMKTFAH*
Ga0183260_100700774	3300017787	Polar Desert Sand	MVAETNTNQVRTWINDARPEDLLTIAPLLFGRIGTLDQPQQERFAEDVRRDPKAKRLFEQMQSYSR
Ga0183260_103508162	3300017787	Polar Desert Sand	MVLETNTGQIRTWIKDAPPEELVTIAPLLFSRIGTLDQRQQDRFIQEVQRDPQAKRVFEKMQTYSR
Ga0183260_109711491	3300017787	Polar Desert Sand	MVLDKSNTNQFRTWIKDAPPEDLVTIAPLLFSRIGTLEQSHQERFIQEVQRDPQAKRVFEKMQSYTH
Ga0136617_101521421	3300017789	Polar Desert Sand	MVLDKSNTNQFRTWIKDAPPEDLVTIAPLLFSRIGTLEPRDQDRFIQEVQRDPQAKRVFEKMQSSAR
Ga0136617_105875862	3300017789	Polar Desert Sand	MVTETNTNQVRTWINDARPEDLLTIAPLLFGRIGTLDQPQQERFAEDVRRDPKAKRLFEQMQSYSR
Ga0187825_104086801	3300017930	Freshwater Sediment	MVAGTNISQFRSLLNEATPDDLVTIAPLLLSRIGTLDQGKQEQFIQQVKSDPQAKIVFEQMKTFTH
Ga0190272_112490902	3300018429	Soil	MVLDTNTSQFRTWIKDAQPEDLVTVAPLLFSRIGTLESRHQEKFIQEVQSDPQAKRVFEKMLSFSQ
Ga0190272_113139892	3300018429	Soil	MVLDTNTTQFRTWIKDAPPEDLVTIAPLLFSRIGTLEQSHQERFIQEVQRDPQAKRVFEKMQSFSQ
Ga0190272_116707721	3300018429	Soil	MVLDTNTSQFRTWIKDAPPEDLVTIAPLLLTRIGTLEQSHQERFVQEVQRDPQAKRVFEKIQSFSQ
Ga0190272_120068142	3300018429	Soil	MVTDTNIGQFRTFIKDAQPEDLVTIAPLLFSRIGTLESPLQERFIQDVQKDPQARRVFEKIQS
Ga0190272_127455132	3300018429	Soil	LETNTSQFRTWINDASPEDLVAVGPLLFGRIGTLDQRHQDRFIQEVKKDPQAKRVFEKMQSFTS
Ga0190270_103717212	3300018469	Soil	MVFDPTNTNQVRTWIKDAPPEELLTIAPVLFNRIGTLGQTHQEKFVKDIQGDPQTKRVFEKMQSFA
Ga0190270_104753353	3300018469	Soil	MVLDSTNTSQFRTWIKDASPEELVTIAPLLFTRIGTLEQSQQDRFIKEVQSDPQAKRVFEKILS
Ga0190274_118935941	3300018476	Soil	MVFDPTNTNQVRTWIKDAPPEELLTIAPVLFNRIGTLGQTHQEKFVKDIQGDPQTKRVFDKMQSFA
Ga0190274_131644672	3300018476	Soil	MVLDPTNASKFRNWVKDAQPEDLLSIAPVLFSRIGTFDQIHQDRFFKEIKSDPQAKRVFDKMHSYAD
Ga0190274_136945552	3300018476	Soil	MVLDTNTSQFRTWIKDAPPEDLVTIAPLLFSRIGTLEQSHQERFIQEVQRDPQAKRVFEKIQSFSQ
Ga0066669_102311632	3300018482	Grasslands Soil	MVGGTNISQFRTLLNDATPEDLVTIAPLLFSRIGTLDQSQQDRFIQEVKSDPQAKRVFEKMQSYTH
Ga0190273_116621501	3300018920	Soil	MVADNNASQFRNWINTAEPEDLLNIAPVLLNRIGALDQRHQERFIQEVQRDPQTKRMFKQMQSYSR
Ga0190273_122422662	3300018920	Soil	MVLETASTNQFRTWIKDAPPEDLVTIAPLLFSRIGTLEQRQQERFIQEVQRDPQAKRVFEKMQSSTR
Ga0193604_10347251	3300019132	Soil	VVAESNTSQFRSWIDTAQPEDLLTIAPVLFSRIGTLEPRYQDRFIENVQRDPQAKRVFEKMQSSTR
Ga0184646_11697903	3300019259	Groundwater Sediment	MVAGTNISQFRTWINDATPEDLVTIAPLLFSRIGTFEQSHQERFIKEVQSDPQAKRVFEKMQSYAH
Ga0173479_104767422	3300019362	Soil	MVTEMNISQFRSWLNNAPPEDLVTIAPQLFSRIGTLDDRHQDRLIQEVQNNPQAKSLFRKLQTVS
Ga0190264_111818122	3300019377	Soil	MVLDPTSTNQFRTWIKDAPPEELLSIAPLLFSRIGTLESPLQERFIQEVQRDPQAKRVFEKIQSFSKVS
Ga0190264_120581441	3300019377	Soil	AKGEPKMVADNNASQFRSWINTAQPEDLLTIAPVLFNRIGTLDQRHQDRFIQEVQRDPQAKRMFEQMQSTSR
Ga0193715_10817402	3300019878	Soil	MVTGTNISQFRTLLNEAPPEDLVTIAPLLFTRIGTLEQSQQDQVIQKIQSDPQAKSVFEKMKSFTH
Ga0193751_100012252	3300019888	Soil	MVLDPTNTSQFRTWIKDAPPEDVVTIAPLLFSRIGTLDQSHQERFIQEVQNDPQAKRVFEKIQSHAR
Ga0193731_10113253	3300020001	Soil	MVGGTNLSQFRTLLNDATPDDVVTIAPLLFSRIGTLDQPHQDRFIQEVRSDPQAKRAFEKIQSFSQ
Ga0224452_11342092	3300022534	Groundwater Sediment	MVLDTNTSQFRTWIKDAQPEDLVTIAPLLFSRIGTLEQSHQERFIQEVQKDPQAKRVFEKLQSFSQ
Ga0222622_106970551	3300022756	Groundwater Sediment	MVTGTNLSQFRTFINDATPEDLLTIAPLLFSRIGTLDQAQQDRFIQQVKSDPQAKSVFEKLQTVAH
Ga0209642_107739562	3300025167	Soil	MVLDTNTSQFRTWIKDAPPEDLVTIAPLLFSRIGTLEQSHQERFIQEVQKDPQAKRVFEKIQS
Ga0207654_103882482	3300025911	Corn Rhizosphere	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKIKSFTH
Ga0207662_110862202	3300025918	Switchgrass Rhizosphere	MVAGTNISQFRSLLNEATPDDLVTIAPLLFNRIGTLDQSKQDLLIQQIKSDPQAKTV
Ga0207657_101031573	3300025919	Corn Rhizosphere	MVGGTNISQFRNLLDEAPPEDLATIAPLLFSRIGTLGQSQQEQVIQQIQRDPQAKSVFEKMKSFTH
Ga0207681_106693371	3300025923	Switchgrass Rhizosphere	MVTEMNISQFRSWLNNAPPEDLVTIAPQLFSRIGTLDDRHQDRFIQEVQNNPQAKSLFRKLQTVS
Ga0207650_112229422	3300025925	Switchgrass Rhizosphere	MVGGTNISQFRTWLNDAAPEDLVTIAPLLFSRLGTLGQTQQDQVIQEIRRDPQAKIVFEKMKSFTH
Ga0207644_104287061	3300025931	Switchgrass Rhizosphere	VAGTDISQFRSFIQNASPEDLVTIAPLLFSRIGTLDQSHQDRFIKQVQSDPQAKRVLEKVQTL
Ga0207644_110338612	3300025931	Switchgrass Rhizosphere	ISQFRSLLNEATPDDLVTIAPLLFNRIGTLDQSKQDLLIQQIKSDPQAKTVFEKMKTFAH
Ga0207651_101469073	3300025960	Switchgrass Rhizosphere	GTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESVIQEIQRDPEARRVFEKIKSFTH
Ga0207651_116030932	3300025960	Switchgrass Rhizosphere	MVAGTDISQFRSFIQNASPEDLVTIAPLLFSRIGTLDQSHQDRFIKQVQSDPQAKRVLEKVQTL
Ga0207658_112553082	3300025986	Switchgrass Rhizosphere	MVGGPNISQFRTWLNDAAPQDLVTIAPLLFSRIGTLDQSHQDRFIQEVKGDPQAKRVFEKMQSYAH
Ga0207641_112008562	3300026088	Switchgrass Rhizosphere	MVAGTNISQFRTLLNDAPPEDLVTIAPLLFNRIGTLGQSQQESIIQEIQRDPEARRVFEKIKSFTH
Ga0209647_10072489	3300026319	Grasslands Soil	MVGGTNISQFRTLLNDAAPEELVTIAPLLFSRIGNLDQSQQDRFIQEVKSDPQAKRVFEKMQSSTH
Ga0208612_10180121	3300027638	Polar Desert	HRGISNQFRTWIKDAPPEDLVTIAPLLVSRIGTPEPRHQERFIQEVQRDPQAKRVFEKMQSYTH
Ga0209485_10790952	3300027691	Agricultural Soil	MVLDPTSTNQFRTWIKDAPPEELVSVAPLLFSRIGTLDQAQQDRFIDEVHRDPQAKRIFDRMKSFSQ
Ga0209580_104133761	3300027842	Surface Soil	MIAGTNISQFRNFLTDATPEDLVTIAPLVFSRIGTLDQSHQERLIQNIQSDPQAKSVFSKLQTVGR
Ga0308206_11247542	3300030903	Soil	KGEIKMVTGTNISQFRTLINDATPEDLVTIAPVLFSRIGTLDRPYQERFIQEVQRDPKAKSVFEKLHTFSQ
Ga0308206_11273102	3300030903	Soil	MVTGTNISQFRTLLNEAPPEDLVTIAPLLFSRIATLGPSQQDQVIQKIQSDPQAKSVFEKMKSFTQ
Ga0308201_102688621	3300031091	Soil	VPHGRFQMVTGTNISQFRTLLNEAPPEDLVTIAPLLFNRIGTLGQDQQDRVIQEIQRDPQAKVVFEKMKSFTH
Ga0308204_102082281	3300031092	Soil	MVTGTNISQFRTLLNEAPPEDLVTIAPLLFNRIGTLGQDQQDRVIQEIQRDPQAKVVFEKMKSFTH
(restricted) Ga0255311_10001341	3300031150	Sandy Soil	MVLETTSTNQFRTWIKDAPPNDLVAIAPLLFSRIGSLEQSHQERFIQEVQRDPQAKRVLEKMQSFTH
(restricted) Ga0255310_100001184	3300031197	Sandy Soil	MVLETTSTNQFRTWIKDAPPNDLVAIAPLLFSRIGSLEQSHQERFIQEVQRDPLAKRVLEKMQSFTH
Ga0299914_104261352	3300031228	Soil	MVTEMNISQFRSWLDNAPPEDLVTIAPQLFSRIGTLDERHQNRFIQEVHNDPQAKSLFRKLQTVS
Ga0307408_1001146562	3300031548	Rhizosphere	MVLDPTKSSQFRSWIKDAPPEDIVTIAPALFSRVGTLDKSHQERFIQEVQRDPQAKSVFEKMKDYAH
Ga0307408_1020389192	3300031548	Rhizosphere	MVGTNISQFRTFINDASPEDLVTIAPLLFSRIGTLDQTQQDRLVQQIKSDPQAKSVFE
Ga0307405_105306631	3300031731	Rhizosphere	MVLDPTKSSQFRSWIKDAPPEDIVTIAPALFSRVGTLDKNHQERFIQEVQRDPQAKSVFEKMKDYAH
Ga0307468_1023091352	3300031740	Hardwood Forest Soil	MVAGTNISQFRTLLNDAPPEDLATIAPLLFNRIGTLGQSQQERVIQEIQRDPQAKSVFEKMQSFTH
Ga0307413_112932432	3300031824	Rhizosphere	MVLDSTNASKFRTWIKDEQPEDLVSIAPLLFSRIGTLEQGQQERFIKEVQSDPQAKRVFEKMQSYAH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters