Metagenome / Metatranscriptome Family F064921

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064921
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	71 residues
Representative Sequence	MCDQPDPFVFPELPDEAAAALDEFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPMPAPLPPLRDPPF
Number of Associated Samples	72
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.72 %
% of genes near scaffold ends (potentially truncated)	15.62 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.469 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated (35.938 % of family members)
Environment Ontology (ENVO)	Unclassified (50.781 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant corpus (35.938 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.21% β-sheet: 0.00% Coil/Unstructured: 59.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF13401	AAA_22	42.19
PF00665	rve	7.81
PF03979	Sigma70_r1_1	2.34
PF13408	Zn_ribbon_recom	0.78
PF01204	Trehalase	0.78
PF00248	Aldo_ket_red	0.78
PF13338	AbiEi_4	0.78
PF06123	CreD	0.78
PF09720	Unstab_antitox	0.78
PF03595	SLAC1	0.78
PF00717	Peptidase_S24	0.78
PF07929	PRiA4_ORF3	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	7.81
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	7.81
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	7.81
COG4584	Transposase	Mobilome: prophages, transposons [X]	7.81
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.34
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	0.78
COG1626	Neutral trehalase	Carbohydrate transport and metabolism [G]	0.78
COG4452	Inner membrane protein CreD involved in colicin E2 resistance	Defense mechanisms [V]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.47 %
Unclassified	root	N/A	44.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.47 %
Unclassified	root	N/A	44.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.47 %
Unclassified	root	N/A	44.53 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.53 %
Unclassified	root	N/A	44.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.53 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	13.28 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.47 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.53 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	6.25 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	4.69 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	2.34 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.53 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.25 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	2.34 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1.56 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.53 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.25 %
Thauera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	2.34 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	1.56 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.53 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.25 %
Thauera phenylacetica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	1.56 %
Acidithiobacillus ferrivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	0.78 %
Thiocapsa marina	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10036996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	3839	Open in IMG/M
3300003350\|JGI26347J50199_1005204	All Organisms → cellular organisms → Bacteria → Proteobacteria	1208	Open in IMG/M
3300004082\|Ga0062384_100085432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1648	Open in IMG/M
3300004082\|Ga0062384_100509139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	799	Open in IMG/M
3300004152\|Ga0062386_100383901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	1129	Open in IMG/M
3300004152\|Ga0062386_100432838	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
3300005602\|Ga0070762_11017985	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300006052\|Ga0075029_100284000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	1053	Open in IMG/M
3300006176\|Ga0070765_100335192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1404	Open in IMG/M
3300009500\|Ga0116229_10063993	All Organisms → cellular organisms → Bacteria	3518	Open in IMG/M
3300009500\|Ga0116229_10261016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1472	Open in IMG/M
3300009500\|Ga0116229_10336230	Not Available	1269	Open in IMG/M
3300009500\|Ga0116229_10337281	All Organisms → cellular organisms → Bacteria → Proteobacteria	1267	Open in IMG/M
3300009500\|Ga0116229_10371218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1198	Open in IMG/M
3300009500\|Ga0116229_10418042	Not Available	1117	Open in IMG/M
3300009500\|Ga0116229_11525646	Not Available	528	Open in IMG/M
3300009500\|Ga0116229_11549089	Not Available	523	Open in IMG/M
3300009510\|Ga0116230_10092790	Not Available	2610	Open in IMG/M
3300009510\|Ga0116230_10174586	All Organisms → cellular organisms → Bacteria → Proteobacteria	1766	Open in IMG/M
3300009510\|Ga0116230_10287069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1307	Open in IMG/M
3300009510\|Ga0116230_10418044	Not Available	1040	Open in IMG/M
3300009510\|Ga0116230_10425483	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300009510\|Ga0116230_10902448	Not Available	651	Open in IMG/M
3300009627\|Ga0116109_1006390	Not Available	1806	Open in IMG/M
3300009627\|Ga0116109_1044984	Not Available	827	Open in IMG/M
3300009627\|Ga0116109_1120100	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300009633\|Ga0116129_1010807	All Organisms → cellular organisms → Bacteria → Proteobacteria	3552	Open in IMG/M
3300009633\|Ga0116129_1200107	Not Available	567	Open in IMG/M
3300009697\|Ga0116231_10201002	Not Available	1132	Open in IMG/M
3300009697\|Ga0116231_10472222	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300009697\|Ga0116231_10725954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	541	Open in IMG/M
3300009701\|Ga0116228_10047884	All Organisms → cellular organisms → Bacteria	3433	Open in IMG/M
3300009701\|Ga0116228_10100867	All Organisms → cellular organisms → Bacteria → Proteobacteria	2156	Open in IMG/M
3300009701\|Ga0116228_11117100	Not Available	522	Open in IMG/M
3300009709\|Ga0116227_10039189	All Organisms → cellular organisms → Bacteria	4674	Open in IMG/M
3300009709\|Ga0116227_10132628	All Organisms → cellular organisms → Bacteria → Proteobacteria	1982	Open in IMG/M
3300009709\|Ga0116227_10233450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300009709\|Ga0116227_10430493	Not Available	1004	Open in IMG/M
3300009709\|Ga0116227_10794314	Not Available	714	Open in IMG/M
3300009709\|Ga0116227_10805370	Not Available	708	Open in IMG/M
3300009709\|Ga0116227_11014186	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300009709\|Ga0116227_11388613	Not Available	527	Open in IMG/M
3300009787\|Ga0116226_10074042	All Organisms → cellular organisms → Bacteria	3486	Open in IMG/M
3300009787\|Ga0116226_10176837	Not Available	2221	Open in IMG/M
3300009787\|Ga0116226_10198837	All Organisms → cellular organisms → Bacteria → Proteobacteria	2083	Open in IMG/M
3300009787\|Ga0116226_10361433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1487	Open in IMG/M
3300009787\|Ga0116226_11717122	Not Available	576	Open in IMG/M
3300009787\|Ga0116226_11913981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	539	Open in IMG/M
3300012922\|Ga0137394_10128848	Not Available	2146	Open in IMG/M
3300012924\|Ga0137413_10057304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2284	Open in IMG/M
3300012944\|Ga0137410_10234966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1431	Open in IMG/M
3300014167\|Ga0181528_10008460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6189	Open in IMG/M
3300014168\|Ga0181534_10046663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2135	Open in IMG/M
3300014168\|Ga0181534_10862419	Not Available	539	Open in IMG/M
3300014492\|Ga0182013_10360195	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300014493\|Ga0182016_10169385	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300014499\|Ga0182012_10510701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	780	Open in IMG/M
3300014499\|Ga0182012_10984797	Not Available	530	Open in IMG/M
3300014654\|Ga0181525_10310736	Not Available	861	Open in IMG/M
3300014654\|Ga0181525_10543724	Not Available	645	Open in IMG/M
3300014838\|Ga0182030_10070722	All Organisms → cellular organisms → Bacteria → Proteobacteria	5179	Open in IMG/M
3300014838\|Ga0182030_10124519	Not Available	3411	Open in IMG/M
3300014838\|Ga0182030_10404721	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300015193\|Ga0167668_1065187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	735	Open in IMG/M
3300015245\|Ga0137409_11481910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	526	Open in IMG/M
3300017946\|Ga0187879_10299704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	893	Open in IMG/M
3300018016\|Ga0187880_1125373	Not Available	1234	Open in IMG/M
3300019886\|Ga0193727_1070351	Not Available	1082	Open in IMG/M
3300022872\|Ga0224526_1102436	Not Available	512	Open in IMG/M
3300025463\|Ga0208193_1002637	All Organisms → cellular organisms → Bacteria → Proteobacteria	7124	Open in IMG/M
3300027164\|Ga0208994_1046174	Not Available	649	Open in IMG/M
3300027609\|Ga0209221_1005234	All Organisms → cellular organisms → Bacteria → Proteobacteria	3283	Open in IMG/M
3300027737\|Ga0209038_10034174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1514	Open in IMG/M
3300027768\|Ga0209772_10088270	Not Available	946	Open in IMG/M
3300027795\|Ga0209139_10003029	All Organisms → cellular organisms → Bacteria → Proteobacteria	6292	Open in IMG/M
3300027803\|Ga0209910_10055816	Not Available	500	Open in IMG/M
3300027807\|Ga0209208_10053568	All Organisms → cellular organisms → Bacteria → Proteobacteria	3412	Open in IMG/M
3300027807\|Ga0209208_10054376	Not Available	3368	Open in IMG/M
3300027807\|Ga0209208_10088929	Not Available	2187	Open in IMG/M
3300027807\|Ga0209208_10112501	All Organisms → cellular organisms → Bacteria → Proteobacteria	1785	Open in IMG/M
3300027807\|Ga0209208_10167484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300027807\|Ga0209208_10248162	Not Available	945	Open in IMG/M
3300027824\|Ga0209040_10496856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	543	Open in IMG/M
3300027860\|Ga0209611_10045854	All Organisms → cellular organisms → Bacteria → Proteobacteria	3643	Open in IMG/M
3300027860\|Ga0209611_10048735	Not Available	3448	Open in IMG/M
3300027860\|Ga0209611_10197913	Not Available	1231	Open in IMG/M
3300027860\|Ga0209611_10278635	Not Available	990	Open in IMG/M
3300027860\|Ga0209611_10574540	Not Available	625	Open in IMG/M
3300027860\|Ga0209611_10733325	Not Available	532	Open in IMG/M
3300027911\|Ga0209698_11381394	Not Available	513	Open in IMG/M
3300028047\|Ga0209526_10853734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	558	Open in IMG/M
3300028566\|Ga0302147_10321945	Not Available	512	Open in IMG/M
3300028747\|Ga0302219_10122159	Not Available	991	Open in IMG/M
3300028748\|Ga0302156_10260776	Not Available	790	Open in IMG/M
3300028762\|Ga0302202_10181631	Not Available	1095	Open in IMG/M
3300028882\|Ga0302154_10202917	Not Available	1007	Open in IMG/M
3300029913\|Ga0311362_10927043	Not Available	694	Open in IMG/M
3300029917\|Ga0311326_10644928	Not Available	507	Open in IMG/M
3300029945\|Ga0311330_10357149	Not Available	1230	Open in IMG/M
3300029951\|Ga0311371_10838464	Not Available	1124	Open in IMG/M
3300029951\|Ga0311371_10909623	Not Available	1063	Open in IMG/M
3300029951\|Ga0311371_11031682	Not Available	974	Open in IMG/M
3300029952\|Ga0311346_10460974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	1201	Open in IMG/M
3300029999\|Ga0311339_10596372	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300029999\|Ga0311339_10704287	Not Available	987	Open in IMG/M
3300030020\|Ga0311344_10177929	All Organisms → cellular organisms → Bacteria → Proteobacteria	2230	Open in IMG/M
3300030049\|Ga0302191_10165861	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300030503\|Ga0311370_11357842	Not Available	755	Open in IMG/M
3300030507\|Ga0302192_10064853	All Organisms → cellular organisms → Bacteria → Proteobacteria	1804	Open in IMG/M
3300030746\|Ga0302312_10312222	Not Available	591	Open in IMG/M
3300030776\|Ga0075396_1934485	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300031022\|Ga0138301_1313519	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300031236\|Ga0302324_100276292	All Organisms → cellular organisms → Bacteria → Proteobacteria	2597	Open in IMG/M
3300031258\|Ga0302318_10449170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	652	Open in IMG/M
3300031261\|Ga0302140_10469726	Not Available	987	Open in IMG/M
3300031524\|Ga0302320_10077441	All Organisms → cellular organisms → Bacteria → Proteobacteria	5566	Open in IMG/M
3300031708\|Ga0310686_101238336	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300031708\|Ga0310686_106856535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4542	Open in IMG/M
3300031708\|Ga0310686_108555543	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300031708\|Ga0310686_115165406	Not Available	1142	Open in IMG/M
3300031718\|Ga0307474_10186466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1575	Open in IMG/M
3300031788\|Ga0302319_10556814	Not Available	1209	Open in IMG/M
3300031813\|Ga0316217_10020502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	4654	Open in IMG/M
3300032895\|Ga0335074_10170392	All Organisms → cellular organisms → Bacteria → Proteobacteria	2714	Open in IMG/M
3300032895\|Ga0335074_10234902	All Organisms → cellular organisms → Bacteria → Proteobacteria	2180	Open in IMG/M
3300032898\|Ga0335072_10570393	Not Available	1148	Open in IMG/M
3300032898\|Ga0335072_11445563	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300033405\|Ga0326727_10072478	All Organisms → cellular organisms → Bacteria → Proteobacteria	4938	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.06%
Host-Associated	Host-Associated	35.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	44.53%
Plants	Host-Associated → Plants	35.94%
Aquatic	Environmental → Aquatic	19.53%

Habitat	Taxonomy	Distribution
Peat Moss	Host-Associated → Plants → Peat Moss	35.94%
Soil	Environmental → Terrestrial → Soil	24.22%
Peat	Environmental → Terrestrial → Peat	20.31%
Freshwater	Environmental → Aquatic → Freshwater	17.97%
Sediment	Environmental → Aquatic → Sediment	1.56%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	35.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	10.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.38%
Loam	Environmental → Terrestrial → Soil → Loam	4.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.56%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	35.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.12%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.56%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.78%

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	35.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	11.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.03%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.03%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	5.47%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.12%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.56%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.78%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.78%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009697	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300022872	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_100369965	3300001593	Forest Soil	MMADQPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAAHKRPMPSERTPPHDPPF*
JGI26347J50199_10052042	3300003350	Bog Forest Soil	MLRAVPQRLADMCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGLDERDARRHRPSSTTLPHRDPPX*
Ga0062384_1000854321	3300004082	Bog Forest Soil	MADQPERFFFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRYYRAIDERAARHRPTPSSPPSHQDPPF*
Ga0062384_1005091391	3300004082	Bog Forest Soil	MLRAVPQRLADMCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGLDERDARRHRPSSTTLPHRDPPF*
Ga0062386_1003839011	3300004152	Bog Forest Soil	MAHQSDPFAFPELPDEAAAAIDQLLEDFYHRFQHHYGLQLYRWYHALDEREARHHPTPSSPLTDPPF*
Ga0062386_1004328381	3300004152	Bog Forest Soil	MLRAVPQGLADMCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGLDERDARRHRLSSPTLPHRDPPF*
Ga0070762_110179851	3300005602	Soil	MADPSDPFAFPELPDQAAAALDQFLEDFYYQFQQHYGVQLYRWYRALDEREARRHRLPSPPLPTKDPPF*
Ga0075029_1002840001	3300006052	Watersheds	MGDQPDPFAFPELPDEAAAALDQFLEDFYYQFQQRYGIQLYRWYRSLDEREARRHRLSSPPTLPRDPPF*
Ga0070765_1003351923	3300006176	Soil	MCDQPDPSVFPELPDEAAAALDQFLEDFYNSFQQRYGIQLYRYYRALDERAARHRPVPTRVPLLQDPPF*
Ga0116229_100639931	3300009500	Host-Associated	MASSLDPFIFPELPDEAAAALDQFLEDFYHQFQQRYGMQLYRWYRGLDEREARHQLACPPSSLKDPPF*
Ga0116229_102610162	3300009500	Host-Associated	MCDQPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRHYRALDERAVRHRPIPSAPRQPQDPSF*
Ga0116229_103362301	3300009500	Host-Associated	MCDEPETFIFPELHDEAAAALDQFLEDLYNSFQQRYGIQLYRHYRAIDERAARHRPMPAQQRPLEDPPF*
Ga0116229_103372813	3300009500	Host-Associated	MTGHSEPFIFPELPDEAAAALDQFLEDFYHQFQRRYGIQLYRWYRGLDEREARRQRFLSPPTSPRDPPF*
Ga0116229_103712182	3300009500	Host-Associated	MTEQSDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAAGHRPMLNRQLPLRDPPF*
Ga0116229_104180421	3300009500	Host-Associated	MRHAALLGLAEMCNQPDPFLFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRYYRAIEQRAARHRPVPSAPPSAQDPPF*
Ga0116229_115256462	3300009500	Host-Associated	EPFIFPELPDEAAAALDQFLEDFYHQFQQRYGIQLYRWYRGLDEREARRHRLSSPSPPPQDPPF*
Ga0116229_115490892	3300009500	Host-Associated	MAHQPDPFIFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRHYRAIDERAARHRPSPPSPQDPPF*
Ga0116230_100927902	3300009510	Host-Associated	MADQPDPFIFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYGWYRSLDERAARSHRSSPPLRDPPF*
Ga0116230_101745863	3300009510	Host-Associated	MTGQPDSFAFPELPDEAAAALDQFLEDLYSQFQQRYGIQLCRYYRALDERAARRRPLSTQLPLQDPPF*
Ga0116230_102870693	3300009510	Host-Associated	MCDQPEPFIFPQLEDEAAAALDRFLENLYNSFQQRYGIQLYRYYRAIDERAARHRPMPTQQLPLEDPPF*
Ga0116230_104180442	3300009510	Host-Associated	MCDQPQPFLFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIEERAARHRPMPTRQLPLEDPPF*
Ga0116230_104254832	3300009510	Host-Associated	DMTGHSEPFIFPELPDEAAAALDQFLEDFYHQFQRRYGIQLYRWYRGLDEREARRQRFLSPPTSPRDPPF*
Ga0116230_109024482	3300009510	Host-Associated	MCDQPEPFVFHELDDEAAAALDQFLEDLYNGIQLYRYYRAIDERAVRHRRMPTQQLPLEDPPF*
Ga0116109_10063903	3300009627	Peatland	MPTAGLAEMCDEPDPLVFPELPDEAAAALDHFLEDLDNGFQQRYGIQLYRYYRAIEERAARHRPMPSTQLPLQDPPF*
Ga0116109_10449842	3300009627	Peatland	MAEQPIDRFVFPELPDEAAAAVDHFLEDFYNGFQQRYGIQLYRYYRALDERAARHRPMPSSPPSSQDPPF*
Ga0116109_11201002	3300009627	Peatland	MASSLDPFIFPELPDEAAAALDQFLEDFYHQFQQRYGMQLYRWYRGLDEREARHQLACPPSSPKDPPF*
Ga0116129_10108072	3300009633	Peatland	MCDQPDPFVFPELPDEAAAALDHFLEDFYNGFQQRYGIQLYRYYRAIEERAARHRPMPSASTPLHDPPF*
Ga0116129_12001072	3300009633	Peatland	MCEQTDPFVFPDLPDESAAALDQFLENLYNSFQQRYGIQLYRYYRAIDERAARHRPMPSTQLPLQDPPF*
Ga0116231_102010022	3300009697	Host-Associated	MRHAALLGLAEMCNQPDPFLFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRYYSAIEQRAARHRPVPSAPPSAQDPPF*
Ga0116231_104722222	3300009697	Host-Associated	FVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIEERAARHRPMPTQQLPLEDPPF*
Ga0116231_107259541	3300009697	Host-Associated	MMADQPDPFVFPELPDEAAVALDHFLENLYNSFQQRYGIQLYRYYRALDERAAGHRPMLNRQLPLRDPPF*
Ga0116228_100478844	3300009701	Host-Associated	MTGHSEPFLFPELPDEAAAALDQFLEDFYHQFQQRYGIQLYRWYRGLDEREARRQRFLSPSTSPRDPPF*
Ga0116228_101008671	3300009701	Host-Associated	MRRVVSRGLADMCDQPEPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRRMPTQQLPLEDPPF*
Ga0116228_111171002	3300009701	Host-Associated	PDEAAAALDQFLEDFYYQFQQRYGVQLYGWYRSLDERAARSHRSSPPLRDPPF*
Ga0116227_100391896	3300009709	Host-Associated	MMADQSDPFVFPELPDEAAAALDHFLEDLYNGFQQRYGIQLYRYYRALDERAAGHRPMLNRQLPLRDPPF*
Ga0116227_101326283	3300009709	Host-Associated	MRRVVSRGLADMCDQPEPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIEERAARHRPMPTQQLPLEDPPF*
Ga0116227_102334503	3300009709	Host-Associated	MEHQPDRFIFPELPDEAAAALDHFLEDLYNRFQQRYGIQLYRYYRAIDERAARHRPMPSSPP
Ga0116227_104304931	3300009709	Host-Associated	MCDQPQPFLFPELDDEAAAALDQFLEDLYNSFQQHYGIQLYRYYRAIEERAARHRPMPTRQLPLEDPPF*
Ga0116227_107943141	3300009709	Host-Associated	MTGHSEPFIFPELPDEAAAALDQFLEDLYHQFQQRYGIQLYRWYRGLDEREARRQRFLSPSTSPRDPPF*
Ga0116227_108053701	3300009709	Host-Associated	MCDQPAPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPMPTRQLPLEDPPF*
Ga0116227_110141861	3300009709	Host-Associated	MCDQPAPFVFPELDDEAAAALDQFLKDLYNSFQQHYGIQLYRHYRAIEDRAARHRPMPTRQLPLEDPPF*
Ga0116227_113886132	3300009709	Host-Associated	MRHAALLGLAEMCNQPDPFLFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRYYRAIEERAARHRPVPSAPPSAQDPPF*
Ga0116226_100740424	3300009787	Host-Associated	MTGQPDSFAFPELPDEAAAALDQFLEDLYSQFQQRYGIQLYRYYRALDERAARRRPLSTQLPLQDPPF*
Ga0116226_101768373	3300009787	Host-Associated	MGDQPEPFIFPELEDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRQMPSQQLPLENPPF*
Ga0116226_101988373	3300009787	Host-Associated	MCDQPAPFVFPELDDETAAALDQFLEDLYNSFQQHYGIQLYRHYRAIEERAARHRPMPTRQLPLEDPPF*
Ga0116226_103614334	3300009787	Host-Associated	AGAERSTPRCGGSLMAHQSDPLVFPELPDEAAAAIDQLLENFYHRFQHHYGLQLYRWYHALDEREARHHPTPSSPLTDPPF*
Ga0116226_117171222	3300009787	Host-Associated	PRGLADMCDQPQPFLFPELDDEAAAALDQFLEDLYNSFQQHYGIQLYRYYRAIEERAARHRPMPTRQLPLEDPPF*
Ga0116226_119139812	3300009787	Host-Associated	MENQSDPFVFPELPDEAAAALDHFLEDFYNGFQKRYGIQLYRYYRALDERAARHRPMLNRQLPLRDPPF*
Ga0137394_101288483	3300012922	Vadose Zone Soil	MLRAVLQGRADMADRPDPFLFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAARYTLTPSLSPTLRDPPF*
Ga0137413_100573043	3300012924	Vadose Zone Soil	MLHAALQEFADMCDQPDPFVFPELPDEAAAALDQFLEDFYIQQRYGIQLYRYYRALDERAARHRPAPTRLPPLQEPPF*
Ga0137410_102349663	3300012944	Vadose Zone Soil	MLHAALQELADMCDQPDPFVFPELPDEAAAALDQFLEDFYNSFQQRYGIQLYRYYRALDERAARHRQVPTRLPPLQDPPF*
Ga0181528_100084605	3300014167	Bog	MMADQPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAAHKRPMPSERTPPHDPPL*
Ga0181534_100466633	3300014168	Bog	MCDEPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRHYRAIEERAAHHRPMPSASPPLHDPPF*
Ga0181534_108624191	3300014168	Bog	MDDTSDPFVFPELPDEAAAALDHFLEDLYNGFQQRYGIQLYRYYRALDERAARHRPVLNRQLPLRDPPF*
Ga0182013_103601952	3300014492	Bog	MLRAVPQGLADMCEQPDPFVFPELPDEAAAALDQFLDDFYYQFQQRYGVQLYRWYRGLDERDARRHRLSSPTLPHRDPPF*
Ga0182016_101693853	3300014493	Bog	MAHQPDPFVFPELPDEAAAALDHFLEDFYNGFQQRYGIQLYRYYRALDERAARHRPMPSSPPSSSQDPPF*
Ga0182012_105107012	3300014499	Bog	MCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRALDERDARRHRLSSTTLPHRDPPF*
Ga0182012_109847972	3300014499	Bog	MDDQPDPYVFPELPDEAAAALDHFLEDLYNRFQQRYGIQLYRYYRALDERTARHRPMLNRQLPLRDPPF*
Ga0181525_103107361	3300014654	Bog	MCDEPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRHYRAIEERAAHYRPMPNPPLQDPPF*
Ga0181525_105437242	3300014654	Bog	MESQPDRFVFPELPDEAAAALDHFLEDLYNCFQQRYGIQLYRYYRALDERAAGHRPMLNRQLPLRDPPF*
Ga0182030_100707223	3300014838	Bog	MAEDTDPFTFPELPDEAAAALDRFVEAFYHHFQNHYGLQLYRRYHALDEREARHNPIPSRQLPLEDPPF*
Ga0182030_101245191	3300014838	Bog	MADQPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAAHKRPMPSERTPPHDPPF*
Ga0182030_104047213	3300014838	Bog	MPDQPDPFVFPELPDEAAAALDQLLEDFYHRFQHHYGLQLYRWYHALDEREARRNPTPSSPLADPPF*
Ga0167668_10651871	3300015193	Glacier Forefield Soil	MCDESDPFVFPELPDEAAAALDHFLEDFYNGFQQRYGIQLYRYYRAIEERAAHHRPVPSAPTSAQDPPF*
Ga0137409_114819101	3300015245	Vadose Zone Soil	VADQSDPFIFPELPDEAAAAIDQFLEDFYYQFQQRYGIQLYRWYRGLDEREAHRQQFSSP
Ga0187879_102997043	3300017946	Peatland	MLHAARQELADMCDQPDPFVFPELPDEAAAALDQFLEDFYNSFQQRYGIQLYRYYRALDERAARHRPVPTRLPPLQDPPF
Ga0187880_11253732	3300018016	Peatland	MLHAALQELADMCDQPDPFVFPELPDETAAALDQFLEDFYNSFQQRYGIQLYRYYRALDERAARHRPVPTRLPPLQDPPF
Ga0193727_10703512	3300019886	Soil	MRHAALRGLADMCDEPDPFVFPELPDEAVAALDHFLEDFYNGFQQRYGIQLYRYYRAIEERAARHRPMPSAPPSAQDPPF
Ga0224526_11024362	3300022872	Soil	MTGHSEPFIFPELPDEAAAALDQFLEDFYHQFQQRYGIQLYRWYRGLDEREARRQRFLSPSTSPRDPPF
Ga0208193_10026374	3300025463	Peatland	MCDQPDPFVFPELPDEAAAALDHFLEDFYNGFQQRYGIQLYRYYRAIEERAARHRPMPSASTPLHDPPF
Ga0208994_10461741	3300027164	Forest Soil	MCDQPDPFVFPELPDEAAAALDEFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPMPAPLPPLRDPPF
Ga0209221_10052344	3300027609	Forest Soil	MMADQPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAAHKRPMPSERTPPHDPPF
Ga0209038_100341741	3300027737	Bog Forest Soil	MADQPERFFFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRYYRAIDERAARHRPTPSSPPSHQDPPF
Ga0209772_100882701	3300027768	Bog Forest Soil	MLRAVPQRLADMCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGLDERDARRHRPSSTTLPHRDPPS
Ga0209139_100030293	3300027795	Bog Forest Soil	MLRAVPQRLADMCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGLDERDARRHRPSSTTLPHRDPPF
Ga0209910_100558161	3300027803	Thawing Permafrost	MTGHSEPFIFPELPDEAAAALDQFLEDFYHQFQQRYGIQLYRWYRGLDEREARRQRFLSPPTSPRDPPF
Ga0209208_100535681	3300027807	Host-Associated	MCDQPAPFVFPELDDETAAALDQFLEDLYNSFQQHYGIQLYRHYRAIEERAARHRPMPTRQLPLEDPPF
Ga0209208_100543764	3300027807	Host-Associated	MTGHSEPFLFPELPDEAAAALDQFLEDFYHQFQQRYGIQLYRWYRGLDEREARRQRFLSPSTSPRDPPF
Ga0209208_100889294	3300027807	Host-Associated	MADQPDPFIFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYGWYRSLDERAARSHRSSPPLRDPPF
Ga0209208_101125012	3300027807	Host-Associated	MTGQPDSFAFPELPDEAAAALDQFLEDLYSQFQQRYGIQLYRYYRALDERAARRRPLSTQLPLQDPPF
Ga0209208_101674841	3300027807	Host-Associated	MCDQPEPFIFPQLEDEAAAALDRFLENLYNSFQQRYGIQLYRYYRAIDERAARHRPMPTQQLPLEDPPF
Ga0209208_102481622	3300027807	Host-Associated	MRRVVSRGLADMCDQPEPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRRMPTQQLPLEDPPF
Ga0209040_104968561	3300027824	Bog Forest Soil	MLRAVPQGLADMCEQPDPFVFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGLDERDARRHRLSSPTLPHRDPPF
Ga0209611_100458545	3300027860	Host-Associated	MASSLDPFIFPELPDEAAAALDQFLEDFYHQFQQRYGMQLYRWYRGLDEREARHQLACPPSSLKDPPF
Ga0209611_100487354	3300027860	Host-Associated	MTGHSEPFIFPELPDEAAAALDQFLEDFYHQFQRRYGIQLYRWYRGLDEREARRQRFLSPPTSPRDPPF
Ga0209611_101979132	3300027860	Host-Associated	MCDEPETFIFPELHDEAAAALDQFLEDLYNSFQQRYGIQLYRHYRAIDERAARHRPMPAQQRPLEDPPF
Ga0209611_102786352	3300027860	Host-Associated	MRRVVSRGLADMCDQPEPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRRMP
Ga0209611_105745401	3300027860	Host-Associated	MESQPDRFVFPELPDEAAAALDHFLEDLYNCFQQRYGIQLYRYYRALDERAAGHRPMLNRQLPLRDPPF
Ga0209611_107333252	3300027860	Host-Associated	MTEQSDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAAGHRPMLNR
Ga0209698_113813942	3300027911	Watersheds	MADQPDPFAFPELPDEAAAALDQFLEDFYHQFQQHYGIQLYRWYRGLDEREAHRQRLSSPLPPSRNPPF
Ga0209526_108537342	3300028047	Forest Soil	MLHAALRELADMCDEPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGLQLYRYYRAIDERAARHRPMPNRQLPLQDPPF
Ga0302147_103219452	3300028566	Bog	MENQSDPFVLPELPDEAAAALDHFLEDFYNGFQKRYGIQLYRYYRALDERAARHRPMLNQQLPLRDPPF
Ga0302219_101221592	3300028747	Palsa	MDDQPDPYVFPELPDEAAAALDHFLEDLYNRFQQRYGIQLYRYYRALDERTARHRPMLNRQLPLRDPPF
Ga0302156_102607762	3300028748	Bog	MCDQPAPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPMPTQQLPLEDPPF
Ga0302202_101816312	3300028762	Bog	MENQSDPFVLPELPDEAAAALDHFLEDFYNGFQKRYGIQLYRYYRALDERAARHRPMLNQQLPLQDPPF
Ga0302154_102029172	3300028882	Bog	MLRAVPQGLADMCEQPDPFVFPELPDEAAAALDQFLDDFYYQFQQRYGVQLYRWYRGLDERDARRHRLS
Ga0311362_109270431	3300029913	Bog	MADQPDPFIFPELPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRSLDERAARRHRFLAPPPPP
Ga0311326_106449282	3300029917	Bog	MADPLEPFLFPEIPDEAAAALDQFLEDFYHQFQQRYGVQLYRWYRSLDERAARRDRFPTRPPTDPPF
Ga0311330_103571491	3300029945	Bog	MCDEPNPFVFPELPDEAAVALDHFLEDLYNSFQQRYGIQLYRYYRAIEERAAHHRPIPSVSPPLRDPPF
Ga0311371_108384641	3300029951	Palsa	MCDEPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRHYRAIEERAAHHRPMPNPPLQDPPF
Ga0311371_109096231	3300029951	Palsa	MRHAALLGLADMCDQPDPFVFPELPDEAAAALDHFLEDFYNNFQERYGIQLYRYYRAIEERAARHRPVPSAPPSAQDPPF
Ga0311371_110316821	3300029951	Palsa	MRHAALRELANMCDEPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRHYRAIEERAAHYRPMPNPPLQDPPF
Ga0311346_104609742	3300029952	Bog	MCDQPAPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPMPTRQLPLEDPPF
Ga0311339_105963723	3300029999	Palsa	MDDQPDPYVFPELPDEAAAALDHFLEDLYNRFQQRYGIQLYRYYRALDERTARHRPM
Ga0311339_107042871	3300029999	Palsa	MENQPDPFVFPELPDEAAAALDHLLEDLYNRFQQRYGIQLYRYYRALDERAARHRPVPSSPVSSQDPPF
Ga0311344_101779291	3300030020	Bog	MLRAVPQGLADMCEQPDPFVFPELPDEAAAALDQFLDDFYYQFQQRYGVQLYRWYRGLDERDARRHRLSSPTLPHRD
Ga0302191_101658611	3300030049	Bog	PFVFPELPDEAAAALDQFLDDFYYQFQQRYGVQLYRWYRGLDERDARRHRLSSPTLPHRDPPF
Ga0311370_113578421	3300030503	Palsa	MRHAALRELANMCDEPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRHYRAIEERAAHYRPMPNPPLQDPPF
Ga0302192_100648531	3300030507	Bog	MENQSDPFVLPELPDEAAAALDHFLEDFYNGFQKRYGIQLYRYYRALDERAARHRPMLN
Ga0302312_103122222	3300030746	Palsa	MCDEPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRHYRAIEERAAHYRPMPNPPLQ
Ga0075396_19344852	3300030776	Soil	MGDQPDRFVFPELPDEAAAALDEFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPVPTPLPPLRDPPF
Ga0138301_13135192	3300031022	Soil	MGDQPDRFVFPELPDEAAAALDEFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPVPTPLPPLRDRPF
Ga0302324_1002762923	3300031236	Palsa	MCDEPNPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRAIEERAAHHRPIPSVSPPLRDPPF
Ga0302318_104491701	3300031258	Bog	VPQGLADMCEQPDPFVFPELPDEAAAALDQFLDDFYYQFQQRYGVQLYRWYRGLDERDARRHRLSSPTLPHRDPPF
Ga0302140_104697262	3300031261	Bog	MCDQPAPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRQMPTQQLPLEDPPF
Ga0302320_100774412	3300031524	Bog	MADPLEPFLFPELPDEAAAALDQFLEDFYHQFQQRYGVQLYRWYRSLDERAARRDRFPTRPPTDPPF
Ga0310686_1012383361	3300031708	Soil	PPRLLRVVPRGLADMGDQPDPFVFPELPDEAAAALDEFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPVPTPLPPLRDPPF
Ga0310686_1068565354	3300031708	Soil	MCDQPDPFVFPELPDEAAVALDHFLEDFYNSFQQRYGIQLYRYYRAIEERAARHRPVPSAPPSAQDPPF
Ga0310686_1085555433	3300031708	Soil	MADQPDPFRFPEIPDEAAAALDQFLEDFYYQFQQRYGVQLYRWYRGIDEREARRHRLSSPPLTHRDPPF
Ga0310686_1151654061	3300031708	Soil	MCDEPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRHYRAIEERAAHYRPMPNPPLYDPPF
Ga0307474_101864661	3300031718	Hardwood Forest Soil	MCDEPDPFVFPELPDEAAAALDHFLEDFYNSFQQRYGIQLYRYYRAIEERAARHRPMPSASTPLHEPPF
Ga0302319_105568142	3300031788	Bog	MCDQPKPFVFPELDDEAAAALDQFLEDLYNSFQQRYGIQLYRYYRAIDERAARHRPMPTRQLPLEDPPF
Ga0316217_100205025	3300031813	Freshwater	MESQSDPFAFPELPDEAAAALDHFLEDFYNRFQQRYGIQLYRYYRALDERAGHHRPMLNRQLPLRDPPF
Ga0335074_101703924	3300032895	Soil	MMADQPDPFVFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERAARHRPTPSEPTPLHDPPF
Ga0335074_102349021	3300032895	Soil	MCDQPDPFLFPELPDEAAAALDHFLEDLYNSFQQRYGIQLYRYYRALDERATRYRPLPTPLLPLEDPPF
Ga0335072_105703932	3300032898	Soil	MLRAALRGLAEMCDEPDPFIFPELPDEAAAALDHFLEDFLEDFYNSFQERYGLQLYCYYRAIEERAARHRPMPSTRLPLQDPPF
Ga0335072_114455632	3300032898	Soil	MASSLDPFIFPELPDEAAVALDQFLEDFYHQFQQRYGMQLYRWYRGLDQREARHQLACPPSSPKDPPF
Ga0326727_100724786	3300033405	Peat Soil	MNDRPEPFVFPELPDEAAAALDQFLEDLYYQFQQCYGIQLYRYYRALDERAARRPPLSTQLPLQDPPF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064921

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences