Metagenome / Metatranscriptome Family F064763

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064763
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	80 residues
Representative Sequence	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHVSSQRLGSPFTAAHGMTAY
Number of Associated Samples	107
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.06 %
% of genes near scaffold ends (potentially truncated)	42.97 %
% of genes from short scaffolds (< 2000 bps)	74.22 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.125 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.812 % of family members)
Environment Ontology (ENVO)	Unclassified (32.812 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.219 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 30.97% β-sheet: 0.00% Coil/Unstructured: 69.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00156	Pribosyltran	14.06
PF00174	Oxidored_molyb	4.69
PF14417	MEDS	2.34
PF02518	HATPase_c	2.34
PF04298	Zn_peptidase_2	1.56
PF04390	LptE	1.56
PF08535	KorB	1.56
PF13603	tRNA-synt_1_2	1.56
PF01656	CbiA	1.56
PF08264	Anticodon_1	1.56
PF13561	adh_short_C2	1.56
PF00561	Abhydrolase_1	0.78
PF00543	P-II	0.78
PF00171	Aldedh	0.78
PF07508	Recombinase	0.78
PF03147	FDX-ACB	0.78
PF13607	Succ_CoA_lig	0.78
PF13614	AAA_31	0.78
PF00248	Aldo_ket_red	0.78
PF02195	ParBc	0.78
PF07486	Hydrolase_2	0.78
PF13302	Acetyltransf_3	0.78
PF02556	SecB	0.78
PF07681	DoxX	0.78
PF12680	SnoaL_2	0.78
PF00199	Catalase	0.78
PF12200	DUF3597	0.78
PF00072	Response_reg	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	4.69
COG3915	Uncharacterized conserved protein	Function unknown [S]	4.69
COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	Cell cycle control, cell division, chromosome partitioning [D]	1.56
COG2738	Zn-dependent membrane protease YugP	Posttranslational modification, protein turnover, chaperones [O]	1.56
COG2980	Outer membrane lipoprotein LptE/RlpB (LPS assembly)	Cell wall/membrane/envelope biogenesis [M]	1.56
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.78
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	0.78
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	0.78
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.78
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.78
COG1952	Preprotein translocase subunit SecB	Intracellular trafficking, secretion, and vesicular transport [U]	0.78
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.78
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.78
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	0.78
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.78
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.78

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.12 %
Unclassified	root	N/A	46.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.12 %
Unclassified	root	N/A	46.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.12 %
Unclassified	root	N/A	46.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	20.31 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	14.84 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2.34 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	13.28 %
Methyloceanibacter methanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1.56 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
Schaalia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia	0.78 %
Hyphomicrobium sulfonivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.88 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	13.28 %
Methyloceanibacter methanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1.56 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.56 %
Schaalia turicensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia → Schaalia turicensis	0.78 %
Hyphomicrobium sulfonivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17472325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1352	Open in IMG/M
3300001139\|JGI10220J13317_11095624	Not Available	560	Open in IMG/M
3300001991\|JGI24743J22301_10150179	Not Available	522	Open in IMG/M
3300002075\|JGI24738J21930_10005382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3070	Open in IMG/M
3300002075\|JGI24738J21930_10034926	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300004463\|Ga0063356_103561481	Not Available	671	Open in IMG/M
3300004479\|Ga0062595_100338360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1040	Open in IMG/M
3300005093\|Ga0062594_100384937	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300005093\|Ga0062594_101573510	Not Available	679	Open in IMG/M
3300005327\|Ga0070658_10201610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1679	Open in IMG/M
3300005328\|Ga0070676_10126855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1609	Open in IMG/M
3300005330\|Ga0070690_101518014	Not Available	541	Open in IMG/M
3300005334\|Ga0068869_100048900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3060	Open in IMG/M
3300005337\|Ga0070682_102004649	Not Available	509	Open in IMG/M
3300005345\|Ga0070692_10000829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans	10338	Open in IMG/M
3300005367\|Ga0070667_100973489	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300005406\|Ga0070703_10012413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2414	Open in IMG/M
3300005434\|Ga0070709_10043304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2783	Open in IMG/M
3300005455\|Ga0070663_100000282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	25780	Open in IMG/M
3300005456\|Ga0070678_100000167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	28077	Open in IMG/M
3300005535\|Ga0070684_100099885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2590	Open in IMG/M
3300005544\|Ga0070686_100002299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	10544	Open in IMG/M
3300005544\|Ga0070686_101731998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia → Schaalia turicensis	531	Open in IMG/M
3300005545\|Ga0070695_100004563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8129	Open in IMG/M
3300005842\|Ga0068858_100217321	All Organisms → cellular organisms → Bacteria	1810	Open in IMG/M
3300005844\|Ga0068862_101466338	Not Available	687	Open in IMG/M
3300006358\|Ga0068871_100054834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3235	Open in IMG/M
3300006755\|Ga0079222_10016084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2877	Open in IMG/M
3300006806\|Ga0079220_11086637	Not Available	646	Open in IMG/M
3300006871\|Ga0075434_101793391	Not Available	620	Open in IMG/M
3300006914\|Ga0075436_101376738	Not Available	534	Open in IMG/M
3300006954\|Ga0079219_10071323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1591	Open in IMG/M
3300007076\|Ga0075435_100060335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3075	Open in IMG/M
3300009011\|Ga0105251_10148004	Not Available	1061	Open in IMG/M
3300009036\|Ga0105244_10495811	Not Available	562	Open in IMG/M
3300009094\|Ga0111539_12118922	Not Available	652	Open in IMG/M
3300009100\|Ga0075418_12134521	Not Available	611	Open in IMG/M
3300009545\|Ga0105237_11740570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300009553\|Ga0105249_12131159	Not Available	633	Open in IMG/M
3300010154\|Ga0127503_10640197	Not Available	607	Open in IMG/M
3300010371\|Ga0134125_10746282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1078	Open in IMG/M
3300010371\|Ga0134125_11284590	Not Available	799	Open in IMG/M
3300010373\|Ga0134128_11771934	Not Available	679	Open in IMG/M
3300010396\|Ga0134126_10922210	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300010400\|Ga0134122_10468931	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300012883\|Ga0157281_1049317	Not Available	642	Open in IMG/M
3300012885\|Ga0157287_1071085	Not Available	592	Open in IMG/M
3300012885\|Ga0157287_1100953	Not Available	535	Open in IMG/M
3300012893\|Ga0157284_10125235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	702	Open in IMG/M
3300012897\|Ga0157285_10000190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	7898	Open in IMG/M
3300012897\|Ga0157285_10125955	Not Available	735	Open in IMG/M
3300012898\|Ga0157293_10329083	Not Available	516	Open in IMG/M
3300012903\|Ga0157289_10103574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	818	Open in IMG/M
3300012905\|Ga0157296_10004309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2075	Open in IMG/M
3300012912\|Ga0157306_10260589	Not Available	616	Open in IMG/M
3300012915\|Ga0157302_10016915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1796	Open in IMG/M
3300012916\|Ga0157310_10123924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	862	Open in IMG/M
3300012951\|Ga0164300_10006917	Not Available	3344	Open in IMG/M
3300012951\|Ga0164300_11067922	Not Available	525	Open in IMG/M
3300012955\|Ga0164298_11207004	Not Available	574	Open in IMG/M
3300012957\|Ga0164303_10019315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2593	Open in IMG/M
3300012957\|Ga0164303_11055893	Not Available	583	Open in IMG/M
3300012957\|Ga0164303_11282831	Not Available	541	Open in IMG/M
3300012958\|Ga0164299_10353331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	926	Open in IMG/M
3300012960\|Ga0164301_11110502	Not Available	629	Open in IMG/M
3300012961\|Ga0164302_10008065	All Organisms → cellular organisms → Bacteria	3977	Open in IMG/M
3300012984\|Ga0164309_10344858	Not Available	1091	Open in IMG/M
3300012984\|Ga0164309_11115952	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300012985\|Ga0164308_10994449	Not Available	745	Open in IMG/M
3300012986\|Ga0164304_10483951	Not Available	900	Open in IMG/M
3300012986\|Ga0164304_10507746	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300012987\|Ga0164307_10504091	Not Available	915	Open in IMG/M
3300012987\|Ga0164307_10700810	Not Available	793	Open in IMG/M
3300012988\|Ga0164306_10423966	Not Available	1005	Open in IMG/M
3300012988\|Ga0164306_10562415	Not Available	887	Open in IMG/M
3300012989\|Ga0164305_10281713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1218	Open in IMG/M
3300013105\|Ga0157369_12134413	Not Available	568	Open in IMG/M
3300013296\|Ga0157374_10082852	All Organisms → cellular organisms → Bacteria	3046	Open in IMG/M
3300014326\|Ga0157380_10043680	All Organisms → cellular organisms → Bacteria	3509	Open in IMG/M
3300014326\|Ga0157380_10322046	Not Available	1434	Open in IMG/M
3300014326\|Ga0157380_10726745	Not Available	1001	Open in IMG/M
3300015077\|Ga0173483_10210780	Not Available	901	Open in IMG/M
3300015200\|Ga0173480_10013737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3292	Open in IMG/M
3300015373\|Ga0132257_100406698	All Organisms → cellular organisms → Bacteria	1655	Open in IMG/M
3300017792\|Ga0163161_10083491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2354	Open in IMG/M
3300018465\|Ga0190269_11034791	Not Available	625	Open in IMG/M
3300019356\|Ga0173481_10001239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	6085	Open in IMG/M
3300019356\|Ga0173481_10137994	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300019361\|Ga0173482_10571807	Not Available	562	Open in IMG/M
3300019362\|Ga0173479_10000335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	8982	Open in IMG/M
3300019362\|Ga0173479_10018836	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300019377\|Ga0190264_12237798	Not Available	511	Open in IMG/M
3300020070\|Ga0206356_11802553	Not Available	1130	Open in IMG/M
3300020082\|Ga0206353_10914950	Not Available	781	Open in IMG/M
3300023066\|Ga0247793_1058947	Not Available	626	Open in IMG/M
3300023067\|Ga0247743_1046154	Not Available	623	Open in IMG/M
3300025900\|Ga0207710_10324931	Not Available	780	Open in IMG/M
3300025901\|Ga0207688_10211199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1166	Open in IMG/M
3300025926\|Ga0207659_10031944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3609	Open in IMG/M
3300025927\|Ga0207687_10401235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1128	Open in IMG/M
3300025935\|Ga0207709_11072145	Not Available	661	Open in IMG/M
3300025938\|Ga0207704_10460221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1017	Open in IMG/M
3300025941\|Ga0207711_10437834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1216	Open in IMG/M
3300025942\|Ga0207689_11191708	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300025949\|Ga0207667_10075466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3501	Open in IMG/M
3300026023\|Ga0207677_11003192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	757	Open in IMG/M
3300026035\|Ga0207703_10636718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1011	Open in IMG/M
3300026067\|Ga0207678_10000210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	51779	Open in IMG/M
3300026075\|Ga0207708_10193591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1620	Open in IMG/M
3300026095\|Ga0207676_10335213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1393	Open in IMG/M
3300026118\|Ga0207675_100662752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1050	Open in IMG/M
3300027873\|Ga0209814_10000872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	10383	Open in IMG/M
3300027909\|Ga0209382_11316326	Not Available	731	Open in IMG/M
3300028379\|Ga0268266_10144780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2135	Open in IMG/M
3300028380\|Ga0268265_11845535	Not Available	611	Open in IMG/M
3300028381\|Ga0268264_10985608	Not Available	849	Open in IMG/M
3300028381\|Ga0268264_11805167	Not Available	622	Open in IMG/M
3300028592\|Ga0247822_11278881	Not Available	614	Open in IMG/M
3300031716\|Ga0310813_10026327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	4051	Open in IMG/M
3300031913\|Ga0310891_10206459	Not Available	662	Open in IMG/M
3300032017\|Ga0310899_10020398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2134	Open in IMG/M
3300032122\|Ga0310895_10356771	Not Available	706	Open in IMG/M
3300032180\|Ga0307471_101246022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	907	Open in IMG/M
3300032205\|Ga0307472_100311408	Not Available	1271	Open in IMG/M
3300032205\|Ga0307472_100858276	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300033551\|Ga0247830_10087766	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300033551\|Ga0247830_11260320	Not Available	591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.72%
Host-Associated	Host-Associated	38.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.94%
Plants	Host-Associated → Plants	38.28%
Aquatic	Environmental → Aquatic	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.41%
Freshwater	Environmental → Aquatic → Freshwater	0.78%
Roots	Host-Associated → Plants → Roots	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.84%
Loam	Environmental → Terrestrial → Soil → Loam	7.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.47%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.47%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	32.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.12%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.34%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.34%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.56%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.56%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03005640	2088090014	Soil	MLRNTAIALAAAASLMVGAAALTPTLANYSQCDEQPNAESCPTYAAPALNQHAASRHVNNRHASAYMSSQKLGSPFKAAHGMTAY
JGI10220J13317_110956241	3300001139	Soil	RLPMLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
JGI24743J22301_101501791	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	CPGLAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
JGI24738J21930_100053821	3300002075	Corn Rhizosphere	TPALANYSQCDEQPNAESCPTYAATALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHAMTAY*
JGI24738J21930_100349261	3300002075	Corn Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSP
Ga0063356_1035614812	3300004463	Arabidopsis Thaliana Rhizosphere	MLRNTAIALAAAASLMVGAAALTPTLANYSQCDEQPNAESCPTYAAPALNQHAASRHVNNRHASAYMSSQKLGSPFKAAHGMTAY*
Ga0062595_1003383602	3300004479	Soil	GAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAYRSSQKFGSPFIAAESDKS*
Ga0062594_1003849371	3300005093	Soil	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPLIAAESDKS*
Ga0062594_1015735101	3300005093	Soil	MLRQTLVALAASASLMVGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTAAHGMTAY*
Ga0070658_102016102	3300005327	Corn Rhizosphere	MLRNTALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070676_101268552	3300005328	Miscanthus Rhizosphere	MLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070690_1015180141	3300005330	Switchgrass Rhizosphere	ADSLAAAASLMVGAGALTPALANYSQCDEQPNAESCPTYAATALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHAMTAY*
Ga0068869_1000489001	3300005334	Miscanthus Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAYRSSQKFGSPFIVAESDKS*
Ga0070682_1020046491	3300005337	Corn Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTAAHGMTAY*
Ga0070692_100008297	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MLRNTALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPAPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070667_1009734891	3300005367	Switchgrass Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPFI
Ga0070703_100124131	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGS
Ga0070709_100433043	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0070663_10000028219	3300005455	Corn Rhizosphere	MLRNTALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAFSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070678_10000016724	3300005456	Miscanthus Rhizosphere	VIAISTKGKETSHASQYCPGPRGRFAPARRGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070684_1000998854	3300005535	Corn Rhizosphere	LAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070686_1000022995	3300005544	Switchgrass Rhizosphere	VIAISTKGKETSHASQYCPGLAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0070686_1017319981	3300005544	Switchgrass Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPFIAAESDKS*
Ga0070695_1000045637	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MVGAGALTPALANYSQCDEQPNAESCPTYAAPALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHAMTAY*
Ga0068858_1002173211	3300005842	Switchgrass Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAYRSSQKFGSPFIAAESDKS*
Ga0068862_1014663382	3300005844	Switchgrass Rhizosphere	MLRPTLVALAATVSLMLGAGALTPALANYSQCDEQPNADTCPTYATPAPNEYSMLKSANHYVSAYSSSNKLGSPFLAAESDKS*
Ga0068871_1000548342	3300006358	Miscanthus Rhizosphere	MLRNTALALAAASSLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0079222_100160842	3300006755	Agricultural Soil	MLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTTF*
Ga0079220_110866372	3300006806	Agricultural Soil	MLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAFSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0075434_1017933912	3300006871	Populus Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYGAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0075436_1013767381	3300006914	Populus Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQR
Ga0079219_100713231	3300006954	Agricultural Soil	MLRNTALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTTF*
Ga0075435_1000603351	3300007076	Populus Rhizosphere	MLRNTAIALGAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPF
Ga0105251_101480042	3300009011	Switchgrass Rhizosphere	MVGAGALTPALANYSQCDEQPNAESCPTYAATALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHAMTAY*
Ga0105244_104958111	3300009036	Miscanthus Rhizosphere	MLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0111539_121189221	3300009094	Populus Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASGHMSSQRLGSPFTAAHGMTAY*
Ga0075418_121345212	3300009100	Populus Rhizosphere	ASLMVGAGALTPALANYSQCDEQPNAESCPTYSAPALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHAMTAY*
Ga0105237_117405702	3300009545	Corn Rhizosphere	PALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPFIAAESDKS
Ga0105249_121311591	3300009553	Switchgrass Rhizosphere	LMVAAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPFIAAESDKS*
Ga0127503_106401971	3300010154	Soil	MLGAGALTPALANYSQCDEQPNAETCPTYAAPAPNGRAAYMSANHHASAHRSSQKLGSPFTAAHGMTAYP*
Ga0134125_107462822	3300010371	Terrestrial Soil	MLRNTTIAFAAAASVMLGAGALTPALANYSQCDEQPNAEGCPTYAAPTLSQHAAPRHANNRHALAHMSSQKLGSPFTAAHGMTAY*
Ga0134125_112845901	3300010371	Terrestrial Soil	ALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0134128_117719341	3300010373	Terrestrial Soil	MLRQTLVALAASGSLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSKKYGSLFIAAESDKS*
Ga0134126_109222101	3300010396	Terrestrial Soil	LMLSAGALTPTLANYSQCDEQPNADSCPTYAAPASNAYAAPKSANRHASAYRSSQKLGSPFLAAESDKS*
Ga0134122_104689311	3300010400	Terrestrial Soil	LMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAC*
Ga0157281_10493171	3300012883	Soil	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRQTNNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0157287_10710851	3300012885	Soil	SHAVIAKTKGKETSHVLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0157287_11009531	3300012885	Soil	LAAAASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRQTNNRHASAHMSSQRLKSPFTAAHGMTAY*
Ga0157284_101252352	3300012893	Soil	TAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0157285_100001907	3300012897	Soil	MLRNTALALAAASLLLGPGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0157285_101259552	3300012897	Soil	MLRNTTIALAAAVSLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0157293_103290832	3300012898	Soil	RQASHAVTPHFNQGESPMLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0157289_101035741	3300012903	Soil	PKARRLPMLRNTALALAAASLLLGGGALTPAFTNYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0157296_100043091	3300012905	Soil	VIAISTKGKETSHASQYCPALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0157306_102605891	3300012912	Soil	MLRNTALALAAASLLLAGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0157302_100169153	3300012915	Soil	GALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0157310_101239241	3300012916	Soil	LPMLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0164300_100069178	3300012951	Soil	MLRNTAIVLAAAASLVLGAGALTPALANYSQCDEQPNADRCPTFAAPAPNENSVARHANNRHASAHISSQKLGSPFTAAHGMTAY*
Ga0164300_110679222	3300012951	Soil	TPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0164298_112070041	3300012955	Soil	MLRNTAIVLAAAASLMLGAGALTPALANYSQCDEQPNAESCPTFAAPTPNGNSVARHANRHASAHVASQKLGSPFTAAHGMTAY*
Ga0164303_100193154	3300012957	Soil	MLRNTTIAFAAAASVMLGAGALTPALANYSQCDEQPNAEGCPTYAAPTLSQHAAARHANNRHALAHMSSQKLGSPFTAAHGMTAY*
Ga0164303_110558932	3300012957	Soil	MLRQTLVALAATASLMLGAGALTPALANYSQCDEQPNADTCPTYATPATNAYAAPKSVNRHASPLRSPVITAESDKS*
Ga0164303_112828311	3300012957	Soil	NYSQCDEQPNADTCPTYAAPATNVYAAVYAAPKSANRHASAHRSSQKFGSPFIAAESDKS
Ga0164299_103533311	3300012958	Soil	MLRNTTIAFAAAASVMLGAGALTPALANYSQCDEQPNAEGCPTYAAPTLSQHAATRHANNRHALAHMSSQKLGSPFTAAHGMTAY*
Ga0164301_111105021	3300012960	Soil	MVSAGALTPALANYSQCDEQPNADTCPTYAAPASNAYAVPKSANRHASAYRSSQKFGSPFIVPESDKS*
Ga0164302_100080659	3300012961	Soil	VIAAPQPKQGESAMLRNTAIVLAAAASLVLGAGALTPALANYSQCDEQPNADRCPTFAAPAPNENSVARHANNRHASAHISSQKLGSPFTAAHGMTAY*
Ga0164309_103448581	3300012984	Soil	MLRNTAIVLAAAASLVLGAGALTPALANYSQCDEQPNADRCPTFAAPAPNENSVARHANNRHASAYISSQKLGSPFTAAHGMTAY*
Ga0164309_111159521	3300012984	Soil	ASLVLGAGMLTPALANYSQCDEQPNAERCPTYAAPTKEHAAAIHTYNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0164308_109944491	3300012985	Soil	MLRQTLVALAATASLMLGAGALTPALANYSQGDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPFIAAESDKS*
Ga0164304_104839512	3300012986	Soil	MLRQTLVALAASASLMVGAGALTPALANYSQCDEQPNADTCPTYAAPASNAYAVPKSANRHASAYRSSQKFGSPFIVPESDKS*
Ga0164304_105077462	3300012986	Soil	AASLMLGAGALTPALANYSQCDEQPNAESCPTFAAPTPNGNSVARHANRRASAHIASQKLGSPFTAAHGMTAY*
Ga0164307_105040912	3300012987	Soil	RNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0164307_107008102	3300012987	Soil	MLKQTLVALAASASLILGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAYRSSQKFGSPFIAAESDKS*
Ga0164306_104239662	3300012988	Soil	MLRNTAIVLAAAASLVLGAGALTPALANYSQCDEQPNADRCPTFAAPATNENSVATHANNRHASAHISSQKLGSPFTAAHGMTAY*
Ga0164306_105624151	3300012988	Soil	MLRNTTIAFAAAASVMLGAGALTPALANYSQCDEQPNAEGCPTYAAPFLNPHAATRHANNRHALAHMSSQKLASPFTAAHGMTAY*
Ga0164305_102817132	3300012989	Soil	MLKQTLVALAASALLILGAGALTPALANYSQCDEQPNADTCPTYAAPAPNAYAAPKSANRYASSPRSSQKMGSQLIAAESDKS*
Ga0164305_113540912	3300012989	Soil	MVGAGALTPALANYSQCDEQPNAESCPTYAATALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHA
Ga0157369_121344131	3300013105	Corn Rhizosphere	PALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAYRSSQKFGSPFIAAESDKS
Ga0157374_100828524	3300013296	Miscanthus Rhizosphere	MVGAGALTPALANYSQCDEQPNAESCPTYSAPALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHAMTAY*
Ga0157380_100436801	3300014326	Switchgrass Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQDAATTANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0157380_103220461	3300014326	Switchgrass Rhizosphere	MLRQTLVALAASTSLMVGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTAAHGMTAY*
Ga0157380_107267452	3300014326	Switchgrass Rhizosphere	MVGVGALTPALANYSQCDEQPNAESCPTYAATALNQNAATRHANNRHAWAYMSSQKLGSPFKAAHVMTAYSIIESVLL
Ga0173483_102107801	3300015077	Soil	MLRNTALALAAASLLLGPSALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0173480_100137371	3300015200	Soil	MLRNTALALAAASLLLGASALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF*
Ga0132257_1004066982	3300015373	Arabidopsis Rhizosphere	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTSNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY*
Ga0163161_100834913	3300017792	Switchgrass Rhizosphere	ALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0190269_110347911	3300018465	Soil	MLRNTAIALAATASLMLGAGALTPALANYSQCDKQPNAEGCPTYAAPALNQHAASRHANNRHASAHMSSQKLGSPFTAAHGMTAY
Ga0173481_100012393	3300019356	Soil	MLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0173481_101379941	3300019356	Soil	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRQTNNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0173482_105718071	3300019361	Soil	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0173479_100003355	3300019362	Soil	MLRNTALALAAASLLLGAGALTPAFANYYQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0173479_100188363	3300019362	Soil	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHE
Ga0190264_122377981	3300019377	Soil	TASLMLGAGALTPALANYSQCDEQPNADTCPTYAAPALNAYAAPKSENRHASAHRSSQKLGSTVIAAESDKS
Ga0206356_118025532	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	ASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0206353_109149501	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	LMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0247793_10589471	3300023066	Soil	MLRDTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0247743_10461541	3300023067	Soil	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRHASAHVSSQRLGSPFTAAHGMTAY
Ga0207710_103249312	3300025900	Switchgrass Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPFIAAESDKS
Ga0207688_102111992	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207659_100319441	3300025926	Miscanthus Rhizosphere	LGAGALTPAFAKYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207687_104012352	3300025927	Miscanthus Rhizosphere	LALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207709_110721451	3300025935	Miscanthus Rhizosphere	MLRQTLVALAASASLMVGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTAAHGMTAY
Ga0207704_104602211	3300025938	Miscanthus Rhizosphere	PGLAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207711_104378342	3300025941	Switchgrass Rhizosphere	GLAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207689_111917081	3300025942	Miscanthus Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAYRSSQKFGSPFIAAESDKS
Ga0207667_100754665	3300025949	Corn Rhizosphere	LLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207677_110031921	3300026023	Miscanthus Rhizosphere	CPGLAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207703_106367181	3300026035	Switchgrass Rhizosphere	SLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207678_1000021024	3300026067	Corn Rhizosphere	MLRNTALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRVYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207708_101935911	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MLRQTLVALAASASLMVGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTA
Ga0207676_103352133	3300026095	Switchgrass Rhizosphere	LLLAGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0207675_1006627521	3300026118	Switchgrass Rhizosphere	MLRQTLVALAASASLMVGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTAAHG
Ga0209814_100008721	3300027873	Populus Rhizosphere	TALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0209382_113163261	3300027909	Populus Rhizosphere	MLRNTALALAAASLLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAFSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0268266_101447803	3300028379	Switchgrass Rhizosphere	PARRGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0268265_118455351	3300028380	Switchgrass Rhizosphere	MLRPTLVALAATVSLMLGAGALTPALANYSQCDEQPNADTCPTYATPAPNEYSMLKSANHYVSAYSSSNKLGSPFLAAESDKS
Ga0268264_109856081	3300028381	Switchgrass Rhizosphere	MLRQTLVALAASTSLMVGAGALTPALANYSQCDEQPNADSCPTYAAPASNEHSVARHANNRHASAHISSQKLGSPFTAAHGMTAY
Ga0268264_118051671	3300028381	Switchgrass Rhizosphere	MLRQTLVALAASASLMIGAGALTPALANYSQCDEQPNTDTCPTYAAPASNAYAAPKSANRHASAHRSSQKFGSPLIAAESDKS
Ga0247822_112788811	3300028592	Soil	MLRQTLVALATTASLMLGAGALTPALANYSQCDEQPNADTCPTYAAPAPIAYAAPKSANRQASAHRSSQKLESPVIAAESDKS
Ga0310813_100263275	3300031716	Soil	LLLGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAAHGMTAF
Ga0310891_102064591	3300031913	Soil	MLRNTAIALAAVASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPTLNQHAATRHANNRRASAHMSSQRLGSPFTAAHGMTAY
Ga0310899_100203982	3300032017	Soil	MLRNTALALAAASLLLGGGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSPFTAARGMTAF
Ga0310895_103567711	3300032122	Soil	MLRNTALALAAASLLIGAGALTPAFANYSQCDEQPNAEGCPTYAAPVPNGRAVIGRAYSRREAAHVTSRKLGSTFTAAHGMTAF
Ga0307471_1012460222	3300032180	Hardwood Forest Soil	MLRNTAIAFAVAASLMLGAGVLTPALANYSQCDEQPNAESCPSYAAPTKEHAAAIHTYNRHASAHMSSQ
Ga0307472_1003114082	3300032205	Hardwood Forest Soil	MLRNTAIALAAAASLMLGAGALTPALANYSQCDEQPNAESCPTYAAPVPKEHAAAINIYNRHASAHMSSQRLGSPFTAAHGMTAY
Ga0307472_1008582761	3300032205	Hardwood Forest Soil	MLRQTLVALAATASLMLGAGALTPALANYSQCDEQPNADTCPTYAAPAPNGHAAYMSATRHATANRSSQKLGSPFTAAHGMTAYP
Ga0247830_100877662	3300033551	Soil	MLRNTAIVLAAAVSLMLGAGALTPALANYSQCDEQPNADSCPTFAAPAPNAHAVARHANNRHASAHISSQKLGSPFTAAHGMTAY
Ga0247830_112603202	3300033551	Soil	LVALAATVPLMLGAGALTPAPANYSQCDEQPNADTCPTYATPAPNEYSMLKSANHYVSAYSSSNKLGSPFLAAESDKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064763

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences