Basic Information | |
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Family ID | F064756 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 128 |
Average Sequence Length | 40 residues |
Representative Sequence | VVRVLAVSDEVDDALAADPRAVRGAQLILACGDLPFEYLG |
Number of Associated Samples | 109 |
Number of Associated Scaffolds | 128 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 22.66 % |
% of genes near scaffold ends (potentially truncated) | 99.22 % |
% of genes from short scaffolds (< 2000 bps) | 96.09 % |
Associated GOLD sequencing projects | 106 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.29 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (59.375 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.562 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (42.188 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 11.76% β-sheet: 0.00% Coil/Unstructured: 88.24% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.29 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Soil Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Arctic Peat Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Bog Forest Soil Permafrost Soil Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Palsa Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Attine Ant Fungus Gardens |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0070683_1004529023 | 3300005329 | Corn Rhizosphere | MVRVLAVSDEIDDALVADPTAVRGAQLILACGDLPFEYLGSL |
Ga0070703_102748261 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | VLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGSLMN |
Ga0070714_1004512863 | 3300005435 | Agricultural Soil | MVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFEYLGYLMN |
Ga0070710_110554181 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | VLAVSDEIDDALVADPTAVRGAQLILACGDLPFEYLGSLM |
Ga0070710_112444702 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MVRVLAVSDEIDDALVAGPTAVRGAQLILACGDLPFEYLGS |
Ga0070711_1002620611 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFEYLGYL |
Ga0070711_1017992561 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFEYLG |
Ga0070665_1021163111 | 3300005548 | Switchgrass Rhizosphere | MVRVLAVSDEVDDVLRADPGAARGAELIVSCGDLPFEYL |
Ga0070763_100728311 | 3300005610 | Soil | VLAVSDETSDALLTDLDPVRSARLILACGDLPFDY |
Ga0070763_107949662 | 3300005610 | Soil | VSAPSYDHGVIRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLG |
Ga0068861_1026379992 | 3300005719 | Switchgrass Rhizosphere | MVRVLAVSDEIDDALVADPTAVRGAQLILACGDLPFE |
Ga0066903_1082861212 | 3300005764 | Tropical Forest Soil | VVLVLAVSDEVDDALLADPHAVRAAELIVACGDLPFEYLGRLMNVLD |
Ga0066903_1090946482 | 3300005764 | Tropical Forest Soil | VVLVLAVSDEVDDALLADSHAVRAAELIVACGDLPFEYLGRL |
Ga0068860_1018416811 | 3300005843 | Switchgrass Rhizosphere | MVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFEYLG |
Ga0080026_102431872 | 3300005952 | Permafrost Soil | VLAVSDEVDEGLCADLGPVRAAELVVACGDLPFEYLGHL |
Ga0070717_105323074 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MIRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLG |
Ga0068871_1011073661 | 3300006358 | Miscanthus Rhizosphere | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGSLMN |
Ga0066665_112398971 | 3300006796 | Soil | VVLVLAVSDEVDNALYADVGAVREARLIVACGDLPF |
Ga0079220_104722441 | 3300006806 | Agricultural Soil | VLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLG |
Ga0079219_102136911 | 3300006954 | Agricultural Soil | VVLVLAVSDEVDDALLADWHAVRQPQLIVACGDLP |
Ga0099830_105812454 | 3300009088 | Vadose Zone Soil | VVRVLAVSDEVDEGLCANVGLARDAELILACGDLPF |
Ga0105240_114192451 | 3300009093 | Corn Rhizosphere | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGSL |
Ga0105245_114383331 | 3300009098 | Miscanthus Rhizosphere | MVRVLAISDEVDDALVADPTAVRGAQLILACGDLPFEY |
Ga0105249_113954611 | 3300009553 | Switchgrass Rhizosphere | VVCVLAVSDQVEEGLYADLRPVRGADLILACGDLPFEYLGYLMNG |
Ga0116216_102106781 | 3300009698 | Peatlands Soil | MVRVLAVSDEVDDALLANPTAVRGAQLILACGDLRFEYLGSLMNVLDVPL |
Ga0126374_109654741 | 3300009792 | Tropical Forest Soil | MVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFEYLGYLMNG |
Ga0126384_101102363 | 3300010046 | Tropical Forest Soil | VVAVLAVSDEVDSALYADLGAVRAAQLIVACGDLPFDYLAYLM |
Ga0126373_129011611 | 3300010048 | Tropical Forest Soil | VVLVLAVADEVDDALCADVRPVREARLIVACGDLPF |
Ga0126318_105156551 | 3300010152 | Soil | MVRVLAVSDEIDDALVADPTAVRGAQLILACGDLPFEYL |
Ga0127503_104536012 | 3300010154 | Soil | VVLVLAVSDEVDNALYANVGAVREARLIVACGDLPFD |
Ga0074045_105596011 | 3300010341 | Bog Forest Soil | VHVLAVSDEVAGDLLANVSRARSASLILACGDLPAGYLGAL |
Ga0126370_126149321 | 3300010358 | Tropical Forest Soil | VVLVLAVSDEVDDVLLADWHAVRQPQLIVACGDLPF |
Ga0126372_132709272 | 3300010360 | Tropical Forest Soil | VVLVLAVSDEVDNPLSADVGAVREARLIVACGDLPFDYLGYLM |
Ga0126378_106843523 | 3300010361 | Tropical Forest Soil | VVLVLAVSDEVDNALYADVGAVREARLIVACGDLPFD |
Ga0126378_114576573 | 3300010361 | Tropical Forest Soil | MVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFEYL |
Ga0126378_120468062 | 3300010361 | Tropical Forest Soil | VVLVLAVSDEVDNALYADVGAVREARLIVACGDLPFDYLG |
Ga0126378_120915221 | 3300010361 | Tropical Forest Soil | VVRVLAVSDEVDDALAADPRAVRGAQLILACGDLPFEYLG |
Ga0126378_127538432 | 3300010361 | Tropical Forest Soil | VVLVLAVSDEVDDVLLADWHAVRRPQLIVACGDLPF |
Ga0126379_134840081 | 3300010366 | Tropical Forest Soil | VVLVLAVSDEVDDALLADTRAVREARLIVACGDLPFG |
Ga0126381_1028799541 | 3300010376 | Tropical Forest Soil | VVLVLAVSDQVDSALYADVGAVRDARLIVACGDLPFDYL |
Ga0136449_1017421163 | 3300010379 | Peatlands Soil | VLAVSDVVDEALWTDVSPVRSAELIVGCGDLPFEYLGR |
Ga0136449_1039715561 | 3300010379 | Peatlands Soil | VVRVLAVSDVVEEGLWADIGPARGADLILGCGDLPFE |
Ga0134126_106268334 | 3300010396 | Terrestrial Soil | VVRVLAVSDEVDDALVADPAAVRGAQLILACGDLPFGYLGALMNM |
Ga0134126_116147672 | 3300010396 | Terrestrial Soil | MVRVLAVSDEVNDALVADPTAVRGAQLILACGDLPFEYL |
Ga0138579_10678881 | 3300011090 | Peatlands Soil | MVRVLAVSDEVDDALLANPTAVRGAQLILACGDLPFQYL |
Ga0151489_14955223 | 3300011106 | Soil | MVRVLAVSDEIDDALVADPTAVRGAQLILACGDLP |
Ga0150983_140596311 | 3300011120 | Forest Soil | VSTPSYDRGVVRVLAVSDEVDDALVADPTAVRRAQLILACGDLPFEYL |
Ga0153951_11189401 | 3300011404 | Attine Ant Fungus Gardens | VLAVSDEVDDAIAADPGPAGGTDLIVACGDLPFEYL |
Ga0137389_111830871 | 3300012096 | Vadose Zone Soil | VVCVLAVSDEVDEGLYADLGPVRAAKLIVACGDLPFEYLG |
Ga0137383_102261601 | 3300012199 | Vadose Zone Soil | VVRVLAVSDEVDDALVADPAAVRGAQLIVACGDLPFEYL |
Ga0137365_100057979 | 3300012201 | Vadose Zone Soil | VVLVLAVSDEVDDALLADVHAVRQAQLIVACGDLPFEYLG |
Ga0137376_102709253 | 3300012208 | Vadose Zone Soil | VVLVLAVSDEVDDALYANAGAVREAGLIVACGDLPFDYLVT* |
Ga0137379_105026131 | 3300012209 | Vadose Zone Soil | VVCVLAVSDEVDEGLYADLGPVRAAKLVVACGDLPFEYLGYLMNGL |
Ga0137361_118550322 | 3300012362 | Vadose Zone Soil | VVRVLAVADEVDDALCANVSIADSAELILACGDLPFD |
Ga0134046_10886491 | 3300012386 | Grasslands Soil | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPF |
Ga0126375_106319282 | 3300012948 | Tropical Forest Soil | VVLVLAVSDEVDDALLADPHAVRAAELIVACGDLPFEYLGRLMNA |
Ga0126369_126709931 | 3300012971 | Tropical Forest Soil | MVCVLAVSDEVDERLCADLRPVRAAELIVACGDLPFDYLG |
Ga0157375_102178903 | 3300013308 | Miscanthus Rhizosphere | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFE |
Ga0181531_102293763 | 3300014169 | Bog | VVCVLAVSDEVDERLLADLGPVRAAELVVACGDLPFEYLRYLMNGL |
Ga0137418_108143482 | 3300015241 | Vadose Zone Soil | VVRVLAVSDVVEEGLWADIGPVRGAELILGCGDLP |
Ga0134085_105917871 | 3300015359 | Grasslands Soil | VVRVLAVSDEVDDALVAAPAAVRGAQLILACGDLPFGYLGSL |
Ga0182035_106164941 | 3300016341 | Soil | VLAVSDKVDEALAADPGPVHTAELILACGDLPFDYLDTLMNA |
Ga0182038_105373863 | 3300016445 | Soil | VLAVSDEVDDALLADPSAARGVELILACGDLPMEYLGSLMDC |
Ga0182038_110504652 | 3300016445 | Soil | VLAVSDETSEELLATPDLVRSAQLILACGDLPFDYLGALLNRLEIP |
Ga0187875_102181561 | 3300018035 | Peatland | MVRVLAVSDVPDQGLLASLSAVATAELILACGDLP |
Ga0193728_10733383 | 3300019890 | Soil | VVRVLAVSDVVEEGLCADIGPARGADLILACGDLP |
Ga0206350_108272641 | 3300020080 | Corn, Switchgrass And Miscanthus Rhizosphere | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGALMN |
Ga0210405_112076731 | 3300021171 | Soil | VLAPSYDRNVVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGS |
Ga0193694_10191063 | 3300021415 | Soil | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLG |
Ga0224712_106643592 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | VVSVLAVSDEVDEGLCVDLGSVRGAELVLACGDLPFDYLD |
Ga0242676_10405162 | 3300022512 | Soil | VPVASRNRDLVRVLAVSDEVDDALVADPAAVRGAQLILACGDLPFNY |
Ga0208078_11010611 | 3300025544 | Arctic Peat Soil | VVRVLAVSDVVEEGLRADIGPARGADIILACGDLPFEYLGY |
Ga0208480_10769501 | 3300025633 | Arctic Peat Soil | VVRVLAVSDVVEEGLRADIGPARGADIILACGDLPFEYLGYLMNA |
Ga0207671_106701111 | 3300025914 | Corn Rhizosphere | VLAVSDEIDDVLVADPTAVRGAQLILACGDLPFEY |
Ga0207649_112091642 | 3300025920 | Corn Rhizosphere | MVRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGS |
Ga0207646_104341881 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | VLAVSDEVNEALAADPGPARAAELIVACGDLPFDYLDT |
Ga0207700_105787503 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MVRVLAVSDVVDEALSANVSGVRDAELILACGDLPFEYLGSL |
Ga0209839_102174951 | 3300026294 | Soil | VVCVLAVSDEVDERLYADLGPVRAAEFIVACGDLPFEYLGYLMN |
Ga0209073_101892681 | 3300027765 | Agricultural Soil | VVLVLAVSDEVDDALLADPHAVRAAELIVACGDLPFEYL |
Ga0209177_104306941 | 3300027775 | Agricultural Soil | MTRVLAVSDEVDDALVADPTAVRGAQLILACGDLPFEYLGAL |
Ga0209580_101082304 | 3300027842 | Surface Soil | VLAVSDEVDDALLADATAVRSAQLILACGDLPFEYLGSLM |
Ga0247684_10484481 | 3300028138 | Soil | MVCVLAVSDQVDEGLYADLRPVRGADLILACGDLPFE |
Ga0307307_100452743 | 3300028718 | Soil | VLAISDEVDDALVADPTAVRGAQLILACGDLPFEYLGS |
Ga0302234_100690181 | 3300028773 | Palsa | VLAVSDEVDDALVAGPTAVRGAQLILACGDLPFEYLGSLMNILD |
Ga0302176_100258413 | 3300030057 | Palsa | VVCVLAVSDEVDEGLYADLGPVRAAELVVACGDLP |
Ga0302183_100569621 | 3300030509 | Palsa | VLAVSDEVDDALVAGPTAVRGAQLILACGDLPFEYLGSLMNILDVP |
Ga0210254_109543461 | 3300030602 | Soil | MVRVLAVSDEVDDALLANRTAVRGAKLILACGDLPFEYLGSL |
Ga0311354_104324794 | 3300030618 | Palsa | VRVLAVSDEVAGDLLANVSRARSAALILACGDLPADYLGALMNALDV |
Ga0170834_1011381271 | 3300031057 | Forest Soil | VVLVLAVSDEIDDALLADLRAVRRPQLIVACGDLPFEYL |
Ga0299914_113727822 | 3300031228 | Soil | MVCILAVSDEVDERLLDSDLKKLDAKLVVACGDLPFDYLET |
Ga0170824_1282716662 | 3300031231 | Forest Soil | VLAVSDEVDDALLADPAAVRGAQLILACGDLPFEYLGSLMDE |
Ga0170820_119685041 | 3300031446 | Forest Soil | VLAVSDEVDDALLADPAAVRGAQLILACGDLPFEYLGSLMNV |
Ga0318534_103857931 | 3300031544 | Soil | VLAVSDEVDNALYADVAAVREARLIVACGDLPFDYLG |
Ga0318515_101114711 | 3300031572 | Soil | MVRVLAVSDETNDALAADPGPAGAAELILACGDLPSDYLGSLMNALDV |
Ga0318572_106885291 | 3300031681 | Soil | VVLVLAVSDEVDDVLRVDMRAVRAARLIVACGDLPFEYLGYLMNALDV |
Ga0318572_109017682 | 3300031681 | Soil | VLAVSDEVDIALYADVGSVREARLIVACGDLPFDYLGCLMNA |
Ga0318560_100667111 | 3300031682 | Soil | VLAVSDEVDDALLANPSAVRGVELIMACGDLPMGYLS |
Ga0318493_103324481 | 3300031723 | Soil | VVLVLAVSDEADELLRADPRAVRAARLIVACGDLP |
Ga0318493_107122131 | 3300031723 | Soil | VISVLAVSDEADDALVADPTAVRGAQLILACGDLPFEYLGSLMNVLD |
Ga0318500_104258282 | 3300031724 | Soil | VVLVLAVSDEVDDALLADPRAVRAAELIVACGDLPFEYLGRLM |
Ga0318502_103184023 | 3300031747 | Soil | VVLVLAVSDEVDHARYTDVRAVREARLICCGALPA |
Ga0318552_101600492 | 3300031782 | Soil | VVLVLAVSDEVDDALLADPRAVRAAELIVACGDLPFEYLGRLMNM |
Ga0318565_103856732 | 3300031799 | Soil | VVLVLAVSDEADELLRADPRAVRAARLIVACGDLPFEYLGY |
Ga0307473_106537061 | 3300031820 | Hardwood Forest Soil | VLAISDEVDDALVADPTAVRGAQLILACGDLPFEYLGSLMNA |
Ga0318517_101998482 | 3300031835 | Soil | MVLVLAVSDEVDDVLCADVRAVRAAQLILSCGDLPFDYLD |
Ga0318495_103288031 | 3300031860 | Soil | VVLVLAVSDEADELLRVDVRPVQAARLIVACGDLPFEYLG |
Ga0306925_112077961 | 3300031890 | Soil | VVLVLAVSDEVDNMLRADARPVQDAQLVVACGDLPFDYL |
Ga0318536_105892281 | 3300031893 | Soil | VVLVLAVSDEVDHARYTDVGAARKARLIACGDLPA |
Ga0318522_103228601 | 3300031894 | Soil | VVLVLAVSDEVDDALLADWHAVRRPQLIVACGDLPFEY |
Ga0318551_100776453 | 3300031896 | Soil | VVLVLAVSDEVDDALLADWHAVRQAQLIVACGDLPFEYLGQLMNRL |
Ga0318551_102022601 | 3300031896 | Soil | VVLVLAISDEVDDSLLADAHAVRQAQLIVACGDLPFDYLGRLMNLL |
Ga0318551_103089981 | 3300031896 | Soil | VVLVLAVSDEADELLRVDVRPVQAARLIVACGDLPFEYLGYLM |
Ga0310912_112242462 | 3300031941 | Soil | VLAVSDEVDRALYADVGAVRDARLIVACGDLPFDY |
Ga0310916_101087571 | 3300031942 | Soil | VVLVLAVSDEVDDALLADWHAVRQAQLIVACGDLP |
Ga0310913_106039902 | 3300031945 | Soil | VVLVLAVSDEVDNMLRADARPVQDAQLVVACGDLPFDYLDYLMN |
Ga0306926_113593872 | 3300031954 | Soil | VVRVLAVSDVVEEGLLADLGPVRGTELIVACGDLPFDYLGY |
Ga0306926_124827961 | 3300031954 | Soil | VVLVLAVSDEVDDALLADWHAVRRPQLIVACGDLPF |
Ga0318569_104156191 | 3300032010 | Soil | VVLVLAVSDEADELLRADPRAVRAARLIVACGDLPFE |
Ga0318575_101548512 | 3300032055 | Soil | VVLVLAISDEVDDALLADAHAVRQAQLIVACGDLPFDYLGRLM |
Ga0318575_106226022 | 3300032055 | Soil | VLAVSDETSEELLATPDLVRSARLILACGDLPFDYLGALLNRLE |
Ga0318514_101756662 | 3300032066 | Soil | VVLVLAVSDEIDDALLADPRAVRAAELIVACGDLPFEYLGRLMNIL |
Ga0307470_101395833 | 3300032174 | Hardwood Forest Soil | VVAVLAVSDEVDSALYADLGAVREAQLIVACGDLPFDYL |
Ga0335079_103523703 | 3300032783 | Soil | VVLVLAVSDEMDDALYADVGAVREARLIVACGDLPFDYLG |
Ga0335075_104219403 | 3300032896 | Soil | VLAVSDEVDDALLAEPTPARGAELILACGDLPLDYLGSLMNRLDV |
Ga0335075_116823402 | 3300032896 | Soil | VLAVSDEVAENLLADPRPVRSAQLILACGDLPAEYLGALMNR |
Ga0310914_104973481 | 3300033289 | Soil | VLAVSDEVDRVLYADVAAVREARLIVACGDLPFDYLG |
Ga0310914_107913032 | 3300033289 | Soil | VVLVLAISDEVDDALLADAHAVRQAQLIVACGDLPFDYLGRL |
Ga0318519_107360262 | 3300033290 | Soil | VVLVLAVSDEVDDALLADPHAVRAAELIVACGDLPFEYLGRLMNVLKV |
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