Metagenome Family F064716

Basic Information
Family ID	F064716
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	46 residues
Representative Sequence	VVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT
Number of Associated Samples	104
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	82.81 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (92.188 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (17.188 % of family members)
Environment Ontology (ENVO)	Unclassified (56.250 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (67.969 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1DelMOSpr2010_101380321 2B570J14230_101378762 3JGI24006J15134_100555011 4JGI24006J15134_101839542 5JGI24004J15324_101349691 6M2t2BS2_101291772 7M2t2BS2_109724611 8JGI25133J35611_100116693 9JGI25133J35611_100216822 10JGI25133J35611_100893572 11JGI25908J49247_100470911 12Ga0049081_102932231 13Ga0075474_100540021 14Ga0075474_100850072 15Ga0070744_100590702 16Ga0070744_100779411 17Ga0098038_12820361 18Ga0098038_12877471 19Ga0098037_10283581 20Ga0098037_10958382 21Ga0098037_11433281 22Ga0098055_10080661 23Ga0075476_102957101 24Ga0070750_100348732 25Ga0070750_101585372 26Ga0070750_104440852 27Ga0098041_12916061 28Ga0075468_101384452 29Ga0070745_12874692 30Ga0099851_11166841 31Ga0099851_11667081 32Ga0099848_11483351 33Ga0102828_11594262 34Ga0102823_11480162 35Ga0114346_10145671 36Ga0114346_12141361 37Ga0114363_11059241 38Ga0114364_10397412 39Ga0102957_11262502 40Ga0105090_104846621 41Ga0105096_100459842 42Ga0114969_106199842 43Ga0115546_11448542 44Ga0115558_13057052 45Ga0098043_12262901 46Ga0136656_11572182 47Ga0139556_10048211 48Ga0160423_102894282 49Ga0160423_107557502 50Ga0163109_103692421 51Ga0172373_1000959910 52Ga0172373_100949021 53Ga0181391_10333792 54Ga0181390_10176251 55Ga0181373_10750072 56Ga0181419_11511191 57Ga0181416_10900371 58Ga0181428_10898602 59Ga0181402_10778092 60Ga0181402_10976201 61Ga0181400_12100282 62Ga0181407_10723472 63Ga0181407_11428001 64Ga0181409_10942302 65Ga0181408_10604111 66Ga0181385_11963181 67Ga0181343_12070182 68Ga0187220_10135202 69Ga0187217_13173522 70Ga0181386_10894012 71Ga0181358_10389222 72Ga0181357_10095921 73Ga0181357_10254462 74Ga0181349_10410441 75Ga0181346_10194571 76Ga0181346_10321301 77Ga0181346_10395041 78Ga0181346_12696341 79Ga0181348_10246951 80Ga0181355_13456751 81Ga0181591_107500821 82Ga0206130_102205911 83Ga0211504_10772722 84Ga0211636_104054652 85Ga0222717_104612912 86Ga0222718_100019601 87Ga0222716_106029672 88Ga0222713_104424312 89Ga0222719_100151474 90Ga0181353_11554431 91Ga0181354_11796091 92Ga0228654_10362711 93Ga0244775_109562762 94Ga0208157_11412132 95Ga0208793_11246752 96Ga0208158_11592712 97Ga0209349_10797002 98Ga0209348_10307181 99Ga0209128_10814271 100Ga0209645_11421891 101Ga0208160_10356852 102Ga0208150_10582761 103Ga0208899_10961412 104Ga0208427_12132051 105Ga0208545_11683172 106Ga0208785_11563811 107Ga0208547_11606811 108Ga0208917_10912951 109Ga0208645_12188511 110Ga0208644_10186091 111Ga0209630_103947041 112Ga0209951_10541171 113Ga0208133_10217284 114Ga0208133_11200702 115Ga0208975_11800332 116Ga0209668_101899372 117Ga0247838_12339291 118Ga0233397_10150752 119Ga0315907_100254014 120Ga0315899_107350671 121Ga0315899_110867462 122Ga0315900_1000874911 123Ga0315900_105031383 124Ga0315904_107503602 125Ga0315901_110333741 126Ga0335029_0180485_1306_1419 127Ga0335036_0500300_617_757 128Ga0348336_136919_624_752
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1DelMOSpr2010_101380321 2B570J14230_101378762 3JGI24004J15324_101349691 4M2t2BS2_101291772 5Ga0098037_10958382 6Ga0070750_100348732 7Ga0114363_11059241 8Ga0105096_100459842 9Ga0181390_10176251 10Ga0181358_10389222 11Ga0211504_10772722 12Ga0209630_103947041
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 1B570J14230_101378762 2DelMOSpr2010_101380321 3M2t2BS2_101291772 4Ga0098038_12820361 5Ga0098038_12877471 6Ga0099848_11483351 7Ga0114346_12141361 8Ga0114363_11059241 9Ga0105090_104846621 10Ga0181416_10900371 11Ga0181408_10604111 12Ga0181385_11963181 13Ga0187217_13173522 14Ga0181357_10254462 15Ga0181346_10194571 16Ga0181346_12696341 17Ga0181591_107500821 18Ga0211504_10772722 19Ga0222718_100019601 20Ga0209349_10797002 21Ga0208785_11563811 22Ga0315900_1000874911 23Ga0315904_107503602 24Ga0335029_0180485_1306_1419
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.59% β-sheet: 0.00% Coil/Unstructured: 55.41%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF07460	NUMOD3	3.12
PF01165	Ribosomal_S21	0.78
PF13884	Peptidase_S74	0.78
PF03237	Terminase_6N	0.78
PF10805	DUF2730	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.22 %
Unclassified	root	N/A	0.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	1.56 %
Unclassified	root	N/A	0.78 %
Viruses	superkingdom	All Organisms → Viruses	97.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.56 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	92.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.47 %
Unclassified	root	N/A	0.78 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	92.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.56 %
Unclassified	root	N/A	0.78 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.47 %
Unclassified	root	N/A	0.78 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	92.19 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	92.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.47 %
Unclassified	root	N/A	0.78 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	92.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.47 %
Unclassified	root	N/A	0.78 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.47 %
Unclassified	root	N/A	0.78 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	92.19 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013131\|Ga0172373_10009599	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11980	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10094902	All Organisms → Viruses → Predicted Viral	2280	Open in IMG/M
(restricted) 3300028044\|Ga0247838_1233929	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	635	Open in IMG/M
3300000116\|DelMOSpr2010_c10138032	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	853	Open in IMG/M
3300001282\|B570J14230_10137876	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	705	Open in IMG/M
3300001450\|JGI24006J15134_10055501	All Organisms → Viruses → Predicted Viral	1593	Open in IMG/M
3300001450\|JGI24006J15134_10183954	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	652	Open in IMG/M
3300001472\|JGI24004J15324_10134969	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587	Open in IMG/M
3300002144\|M2t2BS2_10129177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	521	Open in IMG/M
3300002144\|M2t2BS2_10972461	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	811	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	29.69%
Marine	Environmental → Aquatic → Marine	67.19%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.56%
Unclassified	Environmental → Aquatic → Unclassified	1.56%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	19.53%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.34%
Lake	Environmental → Aquatic → Freshwater → Lake	8.59%
Lentic	Environmental → Aquatic → Freshwater → Lentic	14.06%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.56%
Oceanic	Environmental → Aquatic → Marine → Oceanic	19.53%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.34%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.56%
Strait	Environmental → Aquatic → Marine → Strait	12.50%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.38%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.47%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	1.56%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.78%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.56%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.34%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.78%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.78%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	19.53%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	17.19%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.38%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	8.59%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.47%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	1.56%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	17.19%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.91%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.56%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.91%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.47%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.91%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.78%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.78%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	10.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.78%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.78%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.56%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.78%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	3.12%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	17.19%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.56%
Marine	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine	1.56%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.78%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.56%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.78%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.56%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.78%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	12.50%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.56%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.78%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	2.34%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300002144	Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)	Environmental	Open in IMG/M
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101380321	3300000116	Marine	SLDAEHISAVANLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKNDGFSQILHV*
B570J14230_101378762	3300001282	Freshwater	VVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT*
JGI24006J15134_100555011	3300001450	Marine	LFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKPNGYSQILHV*
JGI24006J15134_101839542	3300001450	Marine	EYFRTKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQIQHV*
JGI24004J15324_101349691	3300001472	Marine	FSIIISHVESMRDMVDNLIEVNKIKNFSHIQHVYL
M2t2BS2_101291772	3300002144	Marine	LRVKFDFSIIISHVDTMRDMVDNLIEVNKIDGYSYINHK*
M2t2BS2_109724611	3300002144	Marine	DYFRTKFDFSIIISHVDTMRDMVDNLIEVNKINGYSQILHI*
JGI25133J35611_100116693	3300002514	Marine	INLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKINNYSQINHT*
JGI25133J35611_100216822	3300002514	Marine	FEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKIDNYSQINHV*
JGI25133J35611_100893572	3300002514	Marine	INLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKIDNYSQINHV*
JGI25908J49247_100470911	3300003277	Freshwater Lake	NLFDYFRNKFDFSIIISHVDTMRDMVDNLIEVNKINGFSQICHT*
Ga0049081_102932231	3300005581	Freshwater Lentic	ISSVVNLFEYFKTKFDFSIIISHVDSMRDMVDNLIEVNKLNGYSQIHHT*
Ga0075474_100540021	3300006025	Aqueous	SLDREHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV*
Ga0075474_100850072	3300006025	Aqueous	DAEHISSVVNLFEYLRTKFDFSIIISHVDSMRDMVDNLLEVNKINKFSQINHV*
Ga0070744_100590702	3300006484	Estuarine	AEHISAVVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT*
Ga0070744_100779411	3300006484	Estuarine	VTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIDNFSQIIHT*
Ga0098038_12820361	3300006735	Marine	SLDQEHIASVVNLFEYFRTKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQIYHT*
Ga0098038_12877471	3300006735	Marine	KFDFSIIISHVESMRDMVDNLIDVNKIDNFSHIVHT*
Ga0098037_10283581	3300006737	Marine	HIASVINLFEYFRTKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQINHT*
Ga0098037_10958382	3300006737	Marine	RTKFDFSIIISHVESMRDMVDNLIEVNKIENFSQILHT*
Ga0098037_11433281	3300006737	Marine	TKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQINHT*
Ga0098055_10080661	3300006793	Marine	LDREHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV*
Ga0075476_102957101	3300006867	Aqueous	FEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKTQGFSQISHV*
Ga0070750_100348732	3300006916	Aqueous	SEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT*
Ga0070750_101585372	3300006916	Aqueous	FRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT*
Ga0070750_104440852	3300006916	Aqueous	LDSEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSHIYM*
Ga0098041_12916061	3300006928	Marine	YFRTKFDFSIIISHVDTMRDMVDNLIEVNKPNGYSQILHI*
Ga0075468_101384452	3300007229	Aqueous	TKFDFSIIISHVESMRDMVDNLIEVNKIDNFSQIIHT*
Ga0070745_12874692	3300007344	Aqueous	VNLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKTQGFSQISHV*
Ga0099851_11166841	3300007538	Aqueous	SEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSHIYM*
Ga0099851_11667081	3300007538	Aqueous	LFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKTAGYSQICHV*
Ga0099848_11483351	3300007541	Aqueous	ISAVVNLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKTAGYSQICHV*
Ga0102828_11594262	3300007559	Estuarine	DAEHISAVVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT*
Ga0102823_11480162	3300007692	Estuarine	DHISAVVNLFDYFRIKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQISHN*
Ga0114346_10145671	3300008113	Freshwater, Plankton	FRTKFDFSIIISHVDSMRDMVDNLIEVNKQNGYSQINHT*
Ga0114346_12141361	3300008113	Freshwater, Plankton	FRTKFDFSIIISHVDSMRDMVDNLIEVNKQNGYSQINHS*
Ga0114363_11059241	3300008266	Freshwater, Plankton	FDFSIIISHVDTMRDMVDNLLEVNKINGFSEIRHT*
Ga0114364_10397412	3300008267	Freshwater, Plankton	AEHISAVVNLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKINGFSQILHN*
Ga0102957_11262502	3300009027	Pond Water	FEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT*
Ga0105090_104846621	3300009075	Freshwater Sediment	LDSEHISSVVNLFDYFRTKFDFSTIISHVESMRDMVDSLINVDKNNGFSQINHV*
Ga0105096_100459842	3300009170	Freshwater Sediment	LVFNLFDYFRTKCDFLIIISHVESMRDMVDSLINVDKNNGFSQINHV*
Ga0114969_106199842	3300009181	Freshwater Lake	NLFDYFRNKFDFSIIISHVDTMRDMVDNLIEVNKINGFSQILHN*
Ga0115546_11448542	3300009435	Pelagic Marine	SKFDFSIIISHVESMRDMVDNLIEVNKIENFSQIIHT*
Ga0115558_13057052	3300009449	Pelagic Marine	FDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT*
Ga0098043_12262901	3300010148	Marine	LFEYFRSKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHT*
Ga0136656_11572182	3300010318	Freshwater To Marine Saline Gradient	GSLDSEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT*
Ga0139556_10048211	3300011011	Freshwater	GSLDAEHISAVVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT*
Ga0160423_102894282	3300012920	Surface Seawater	LFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIKNFSQILHT*
Ga0160423_107557502	3300012920	Surface Seawater	YFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV*
Ga0163109_103692421	3300012936	Surface Seawater	NLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV*
(restricted) Ga0172373_1000959910	3300013131	Freshwater	FDYFRNKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQISQA*
(restricted) Ga0172373_100949021	3300013131	Freshwater	FDYFRNKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQISHS*
Ga0181391_10333792	3300017713	Seawater	EYFRTKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQINHT
Ga0181390_10176251	3300017719	Seawater	QEHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHVXYL
Ga0181373_10750072	3300017721	Marine	NLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV
Ga0181419_11511191	3300017728	Seawater	SVTNLFEYFRSKFDFSIIISHVESMRDMVDNLIEVNKIENFSQIIHT
Ga0181416_10900371	3300017731	Seawater	YFRTKFDFSIIISHVESMRDMVDNLIEVNKIKNFSQILHT
Ga0181428_10898602	3300017738	Seawater	VSNLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKPNGYSQILHV
Ga0181402_10778092	3300017743	Seawater	WGSLDQEHIASVINLFEYFRTKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQINHT
Ga0181402_10976201	3300017743	Seawater	ISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIKNFSQILHT
Ga0181400_12100282	3300017752	Seawater	RTKFDFSIIISHVDTMRDMVDNLVEVNKTNGYSQILHV
Ga0181407_10723472	3300017753	Seawater	GWGSLDREHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV
Ga0181407_11428001	3300017753	Seawater	TKFDFSIIISHVESMRDMVDNLIEVNKIENFSQILHT
Ga0181409_10942302	3300017758	Seawater	DEGWGSLDREHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIKNFSQILHT
Ga0181408_10604111	3300017760	Seawater	WGSLDREHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV
Ga0181385_11963181	3300017764	Seawater	SLDAEHISAVSNLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKIENFSQIQHT
Ga0181343_12070182	3300017766	Freshwater Lake	FDFCIIISHVDSMRDMVDNLIEVNKINGYSQISHT
Ga0187220_10135202	3300017768	Seawater	RTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHVXYL
Ga0187217_13173522	3300017770	Seawater	LDAEHISAVSNLFDYFRTKFDFSIIISHVDTMRDMVDNLVEVNKTNGYSQILHV
Ga0181386_10894012	3300017773	Seawater	AVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSQILHT
Ga0181358_10389222	3300017774	Freshwater Lake	FDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQIQHIXYLY
Ga0181357_10095921	3300017777	Freshwater Lake	AVVNLFDYFRNKFDFSIIISHVDTMRDMVDNLIEVNKINGFSQISHN
Ga0181357_10254462	3300017777	Freshwater Lake	FEYFRNKFDFSIIISHVDSMRDMVDTLIEVNKINKFSHILHT
Ga0181349_10410441	3300017778	Freshwater Lake	EHISAVVNLFEYFKTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSCINHS
Ga0181346_10194571	3300017780	Freshwater Lake	WGSLDAEHISAVVNLFDYFRNKFDFSIIISHVDTMRDMVDNLIEVNKIQGFSQICHT
Ga0181346_10321301	3300017780	Freshwater Lake	VNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHTXYLYKKTSYVSA
Ga0181346_10395041	3300017780	Freshwater Lake	YFKNKFDFSIIISHVDSMRDMVDTLIEVNKINKFSHISHT
Ga0181346_12696341	3300017780	Freshwater Lake	KFDFCIIISHVDTMRDMVDNLIEVNKINKFSQICHS
Ga0181348_10246951	3300017784	Freshwater Lake	SAVVNLFDYFRNKFDFSIIISHVDTMRDMVDNLIEVNKINGLSQISHS
Ga0181355_13456751	3300017785	Freshwater Lake	AEHISAVVNLFEYFKTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSCINHS
Ga0181591_107500821	3300018424	Salt Marsh	VINLFEYLRTKFDFSIIISHVDSMRDMVDNLLEVNKIEGFSHILHT
Ga0206130_102205911	3300020187	Seawater	WGSLDREHISSVTNLFEYFRSKFDFSIIISHVESMRDMVDNLIEVNKIENFSQIIHT
Ga0211504_10772722	3300020347	Marine	NLFDYFRNKFEFCVIISHVDTMRDMVDSLIEVNKIDNFSHISKT
Ga0211636_104054652	3300020400	Marine	YFRSKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHT
Ga0222717_104612912	3300021957	Estuarine Water	DQEHISSVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIKNFSHIQHV
Ga0222718_100019601	3300021958	Estuarine Water	AAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0222716_106029672	3300021959	Estuarine Water	VNLFEYLRTKFDFSIIISHVDSMRDMVDNLLEVNKIDKFSQIIHA
Ga0222713_104424312	3300021962	Estuarine Water	GSLDSEHISSVVNLFDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKTNGYSQILHS
Ga0222719_100151474	3300021964	Estuarine Water	VINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0181353_11554431	3300022179	Freshwater Lake	SAVVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQIIHS
Ga0181354_11796091	3300022190	Freshwater Lake	AEHIASVVNLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKIDKFSQICHT
Ga0228654_10362711	3300024316	Seawater	EYFRSKFDFSIIISHVESMRDMVDNLIEVNKIENFSQIIHT
Ga0244775_109562762	3300024346	Estuarine	DAEHISAVVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT
Ga0208157_11412132	3300025086	Marine	TKFDFCIIISHVDTMRDMVDNLIEVNKINNYSQINHT
Ga0208793_11246752	3300025108	Marine	LDREHISAVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIENFSHIQHV
Ga0208158_11592712	3300025110	Marine	YFRTKFDFSIIISHVDTMRDMVDNLIEVNKPNGYSQILHI
Ga0209349_10797002	3300025112	Marine	IASVINLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKIDNYSQINHV
Ga0209348_10307181	3300025127	Marine	FDFSIIISHVESMRDMVDNLIEVNKINNFSQIQHT
Ga0209128_10814271	3300025131	Marine	AVINLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKINNYSQINHT
Ga0209645_11421891	3300025151	Marine	NLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKPNGYSQILHI
Ga0208160_10356852	3300025647	Aqueous	SLDAEHISAVVNLFEYFRTKFDFSIIISHVDTMRDMVDNLIEVNKTAGYSQICHV
Ga0208150_10582761	3300025751	Aqueous	FSIIISHVESMRDMVDNLIEVNKIENFSHIQHVXYL
Ga0208899_10961412	3300025759	Aqueous	DSEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0208427_12132051	3300025771	Aqueous	LFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0208545_11683172	3300025806	Aqueous	FEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIDNFSQIIHT
Ga0208785_11563811	3300025815	Aqueous	AEHISSVVNLFEYLRTKFDFSIIISHVDSMRDMVDNLLEVNKINKFSQINHV
Ga0208547_11606811	3300025828	Aqueous	GWGSLDAEHISAVANLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKNNGYSQILHV
Ga0208917_10912951	3300025840	Aqueous	GWGSLDSEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0208645_12188511	3300025853	Aqueous	HIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0208644_10186091	3300025889	Aqueous	SLDSEHIAAVINLFEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0209630_103947041	3300025892	Pelagic Marine	DEGWGSLDREHISSVTNLFEYFRSKFDFSIIISHVESMRDMVDNLIEVNKIENFSQIIHT
Ga0209951_10541171	3300026138	Pond Water	NKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT
Ga0208133_10217284	3300027631	Estuarine	AEHISAVVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGYSKILHT
Ga0208133_11200702	3300027631	Estuarine	EHISSVTNLFEYFRTKFDFSIIISHVESMRDMVDNLIEVNKIDNFSQIIHT
Ga0208975_11800332	3300027659	Freshwater Lentic	AEHISSVVNLFEYFKTKFDFSIIISHVDSMRDMVDNLIEVNKLNGYSQIHHT
Ga0209668_101899372	3300027899	Freshwater Lake Sediment	VNLFDYFRTKFDFSIIISHVDTMRDMVDNLIEVNKINNFSCIQHN
(restricted) Ga0247838_12339291	3300028044	Freshwater	FDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKIDGYSKINHV
Ga0233397_10150752	3300028111	Seawater	KFDFSIIISHVESMRDMVDNLIEVNKIENFSQIIHT
Ga0315907_100254014	3300031758	Freshwater	TKFDFSIIISHVDSMRDMVDNLIEVNKQNGYSQINHS
Ga0315899_107350671	3300031784	Freshwater	FDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKQNGYSQINHS
Ga0315899_110867462	3300031784	Freshwater	GWGSLDSEHISAVVNLFDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQIHHM
Ga0315900_1000874911	3300031787	Freshwater	AVVNLFDYFRIKFDFSVIISHVDSMRDMVDNLIEVNKIAGYSQIQHN
Ga0315900_105031383	3300031787	Freshwater	LFDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKQNGYSQINHS
Ga0315904_107503602	3300031951	Freshwater	WGSLDSEHISAVVNLFDYFRTKFDFSIIISHVDSMRDMVDNLIEVNKINGFSQIHHM
Ga0315901_110333741	3300031963	Freshwater	FDFSIIISHVDSMRDMVDNLIEVNKINGYSQICHN
Ga0335029_0180485_1306_1419	3300034102	Freshwater	TKFDFSIIISHVDSMRDMVDNLIEVNKTQGYSKINHA
Ga0335036_0500300_617_757	3300034106	Freshwater	VVNLFEYFRTKFDFSIIISHVDSMRDMVDNLIEVNKTQGYSKINHA
Ga0348336_136919_624_752	3300034375	Aqueous	FEYFRNKFDFSIIISHVDSMRDMVDKLLEVNKQNGFSQIQNT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters