Metagenome / Metatranscriptome Family F064310

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064310
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	47 residues
Representative Sequence	PNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Number of Associated Samples	105
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.73 %
% of genes near scaffold ends (potentially truncated)	89.84 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.438 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.688 % of family members)
Environment Ontology (ENVO)	Unclassified (37.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.531 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF04519	Bactofilin	89.84
PF12867	DinB_2	1.56
PF09348	DUF1990	1.56
PF01938	TRAM	0.78
PF13545	HTH_Crp_2	0.78
PF00535	Glycos_transf_2	0.78
PF13620	CarboxypepD_reg	0.78
PF04366	Ysc84	0.78
PF13669	Glyoxalase_4	0.78
PF08206	OB_RNB	0.78
PF13517	FG-GAP_3	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	89.84
COG0557	Exoribonuclease R	Transcription [K]	0.78
COG1158	Transcription termination factor Rho	Transcription [K]	0.78
COG1278	Cold shock protein, CspA family	Transcription [K]	0.78
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.78
COG4776	Exoribonuclease II	Transcription [K]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.44 %
Unclassified	root	N/A	1.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.44 %
Unclassified	root	N/A	1.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.44 %
Unclassified	root	N/A	1.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	91.41 %
Unclassified	root	N/A	1.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	87.50 %
Unclassified	root	N/A	1.56 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	87.50 %
Unclassified	root	N/A	1.56 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.81 %
Unclassified	root	N/A	1.56 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.34 %
Unclassified	root	N/A	1.56 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.34 %
Unclassified	root	N/A	1.56 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002669\|Ga0005479J37267_105652	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	628	Open in IMG/M
3300004101\|Ga0058896_1448343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	669	Open in IMG/M
3300004103\|Ga0058903_1486713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	600	Open in IMG/M
3300004103\|Ga0058903_1500537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	624	Open in IMG/M
3300004116\|Ga0058885_1239029	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	638	Open in IMG/M
3300004120\|Ga0058901_1476357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	616	Open in IMG/M
3300004120\|Ga0058901_1547244	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	616	Open in IMG/M
3300004121\|Ga0058882_1738029	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1134	Open in IMG/M
3300004152\|Ga0062386_100118287	All Organisms → cellular organisms → Bacteria → Acidobacteria	2048	Open in IMG/M
3300004152\|Ga0062386_100120850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2026	Open in IMG/M
3300004631\|Ga0058899_10115674	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	658	Open in IMG/M
3300005534\|Ga0070735_10004257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12125	Open in IMG/M
3300005538\|Ga0070731_10786228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	632	Open in IMG/M
3300009624\|Ga0116105_1007827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2170	Open in IMG/M
3300009624\|Ga0116105_1246118	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	507	Open in IMG/M
3300009633\|Ga0116129_1021377	All Organisms → cellular organisms → Bacteria → Acidobacteria	2261	Open in IMG/M
3300009759\|Ga0116101_1197294	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	512	Open in IMG/M
3300009762\|Ga0116130_1218662	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010858\|Ga0126345_1124381	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	644	Open in IMG/M
3300010859\|Ga0126352_1117405	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	761	Open in IMG/M
3300010860\|Ga0126351_1034863	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	516	Open in IMG/M
3300010866\|Ga0126344_1204165	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	631	Open in IMG/M
3300010877\|Ga0126356_11352639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1330	Open in IMG/M
3300011044\|Ga0138545_162259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	518	Open in IMG/M
3300011070\|Ga0138567_1134599	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	592	Open in IMG/M
3300011082\|Ga0138526_1141048	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	619	Open in IMG/M
3300011089\|Ga0138573_1262499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	615	Open in IMG/M
3300011120\|Ga0150983_12335836	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1067	Open in IMG/M
3300011120\|Ga0150983_15967703	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300011120\|Ga0150983_16120134	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	600	Open in IMG/M
3300016702\|Ga0181511_1437111	All Organisms → cellular organisms → Bacteria → Acidobacteria	2238	Open in IMG/M
3300016705\|Ga0181507_1067082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	604	Open in IMG/M
3300017948\|Ga0187847_10001425	All Organisms → cellular organisms → Bacteria	21472	Open in IMG/M
3300017972\|Ga0187781_10042622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3124	Open in IMG/M
3300018035\|Ga0187875_10050100	All Organisms → cellular organisms → Bacteria	2439	Open in IMG/M
3300018042\|Ga0187871_10136580	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1392	Open in IMG/M
3300018042\|Ga0187871_10734948	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	550	Open in IMG/M
3300018090\|Ga0187770_10266089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1330	Open in IMG/M
3300019161\|Ga0184602_106517	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	577	Open in IMG/M
3300019183\|Ga0184601_143291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	598	Open in IMG/M
3300019187\|Ga0184584_107318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	605	Open in IMG/M
3300019187\|Ga0184584_116661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	823	Open in IMG/M
3300019188\|Ga0184599_102122	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	621	Open in IMG/M
3300019189\|Ga0184585_138621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	595	Open in IMG/M
3300019190\|Ga0184600_147029	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	631	Open in IMG/M
3300019275\|Ga0187798_1134389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	580	Open in IMG/M
3300019278\|Ga0187800_1890709	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	803	Open in IMG/M
3300020583\|Ga0210401_10530851	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300021151\|Ga0179584_1139283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	787	Open in IMG/M
3300021171\|Ga0210405_10007952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9244	Open in IMG/M
3300021180\|Ga0210396_10600190	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	957	Open in IMG/M
3300021420\|Ga0210394_10001331	All Organisms → cellular organisms → Bacteria	40386	Open in IMG/M
3300021433\|Ga0210391_10343229	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1171	Open in IMG/M
3300022502\|Ga0242646_1021049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	618	Open in IMG/M
3300022505\|Ga0242647_1039721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	532	Open in IMG/M
3300022505\|Ga0242647_1046534	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	505	Open in IMG/M
3300022508\|Ga0222728_1061866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	650	Open in IMG/M
3300022509\|Ga0242649_1039328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	634	Open in IMG/M
3300022509\|Ga0242649_1043954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	611	Open in IMG/M
3300022522\|Ga0242659_1008476	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1384	Open in IMG/M
3300022523\|Ga0242663_1095459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	586	Open in IMG/M
3300022523\|Ga0242663_1113007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	553	Open in IMG/M
3300022529\|Ga0242668_1078611	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	637	Open in IMG/M
3300022530\|Ga0242658_1087096	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	727	Open in IMG/M
3300022531\|Ga0242660_1077310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	778	Open in IMG/M
3300022531\|Ga0242660_1102585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	701	Open in IMG/M
3300022532\|Ga0242655_10302001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	521	Open in IMG/M
3300022708\|Ga0242670_1066387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	542	Open in IMG/M
3300022714\|Ga0242671_1077877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	598	Open in IMG/M
3300022716\|Ga0242673_1068743	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	632	Open in IMG/M
3300022721\|Ga0242666_1127670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	607	Open in IMG/M
3300022722\|Ga0242657_1030419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1086	Open in IMG/M
3300022724\|Ga0242665_10076866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	947	Open in IMG/M
3300022724\|Ga0242665_10148726	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	738	Open in IMG/M
3300022726\|Ga0242654_10273403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	613	Open in IMG/M
3300023552\|Ga0247551_104104	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	576	Open in IMG/M
3300023672\|Ga0247553_111082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	523	Open in IMG/M
3300026467\|Ga0257154_1086885	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	501	Open in IMG/M
3300027986\|Ga0209168_10003286	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11235	Open in IMG/M
3300028748\|Ga0302156_10390537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	607	Open in IMG/M
3300028866\|Ga0302278_10150455	All Organisms → cellular organisms → Bacteria → Acidobacteria	1214	Open in IMG/M
3300029636\|Ga0222749_10297625	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	833	Open in IMG/M
3300029997\|Ga0302302_1154176	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	894	Open in IMG/M
3300030596\|Ga0210278_1214230	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	507	Open in IMG/M
3300030597\|Ga0210286_1197963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	610	Open in IMG/M
3300030624\|Ga0210251_11111748	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	551	Open in IMG/M
3300030730\|Ga0307482_1188479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	621	Open in IMG/M
3300030738\|Ga0265462_12547712	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	511	Open in IMG/M
3300030740\|Ga0265460_13049829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	504	Open in IMG/M
3300030741\|Ga0265459_13807453	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	529	Open in IMG/M
3300030743\|Ga0265461_13899965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	508	Open in IMG/M
3300030759\|Ga0265745_1015339	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	623	Open in IMG/M
3300030760\|Ga0265762_1049632	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	839	Open in IMG/M
3300030762\|Ga0265775_108591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	623	Open in IMG/M
3300030874\|Ga0265742_1017567	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	590	Open in IMG/M
3300030877\|Ga0265777_123109	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	523	Open in IMG/M
3300030886\|Ga0265772_106902	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	528	Open in IMG/M
3300030888\|Ga0265769_117358	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	550	Open in IMG/M
3300030906\|Ga0302314_10232192	All Organisms → cellular organisms → Bacteria	2217	Open in IMG/M
3300030923\|Ga0138296_1374243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	624	Open in IMG/M
3300030940\|Ga0265740_1023763	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	647	Open in IMG/M
3300031010\|Ga0265771_1001747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1077	Open in IMG/M
3300031017\|Ga0265744_110840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	568	Open in IMG/M
3300031614\|Ga0310103_135720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	583	Open in IMG/M
3300031708\|Ga0310686_110502862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	27112	Open in IMG/M
3300031708\|Ga0310686_113395999	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	548	Open in IMG/M
3300031708\|Ga0310686_113402918	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300031718\|Ga0307474_11364581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	559	Open in IMG/M
3300031754\|Ga0307475_10982765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	664	Open in IMG/M
3300031823\|Ga0307478_10363249	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1194	Open in IMG/M
3300031866\|Ga0316049_106884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	776	Open in IMG/M
3300031870\|Ga0316029_106971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	603	Open in IMG/M
3300031871\|Ga0316036_112037	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	595	Open in IMG/M
3300031955\|Ga0316035_111177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	677	Open in IMG/M
3300031955\|Ga0316035_118362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	565	Open in IMG/M
3300032028\|Ga0316052_107333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	661	Open in IMG/M
3300032028\|Ga0316052_107875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	644	Open in IMG/M
3300032119\|Ga0316051_1007219	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	864	Open in IMG/M
3300032120\|Ga0316053_108545	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	693	Open in IMG/M
3300032120\|Ga0316053_112754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	604	Open in IMG/M
3300032121\|Ga0316040_109693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	660	Open in IMG/M
3300032515\|Ga0348332_10288321	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	790	Open in IMG/M
3300032515\|Ga0348332_11310643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	808	Open in IMG/M
3300032515\|Ga0348332_12121717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	857	Open in IMG/M
3300032515\|Ga0348332_12876322	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	611	Open in IMG/M
3300033134\|Ga0335073_11632120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.84%
Aquatic	Environmental → Aquatic	10.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.59%
Freshwater	Environmental → Aquatic → Freshwater	10.16%
Peat	Environmental → Terrestrial → Peat	3.12%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.12%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.16%
Loam	Environmental → Terrestrial → Soil → Loam	9.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.12%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.38%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.12%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.38%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.12%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.12%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.34%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.56%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.56%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.56%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002669	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF128 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004116	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF206 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011044	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 26 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011070	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019161	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019183	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019187	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019188	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019190	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023552	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023672	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030597	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030624	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR005SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030759	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030762	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030874	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030877	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030886	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030888	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031010	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031017	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031614	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031870	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031871	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031955	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032028	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032119	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032120	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032121	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0005479J37267_1056521	3300002669	Forest Soil	VISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK*
Ga0058896_14483432	3300004101	Forest Soil	VRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK*
Ga0058903_14867131	3300004103	Forest Soil	NPNKERNFVTHVEADKPTSDPRASSRTRASYYEYTERACHDGE*
Ga0058903_15005371	3300004103	Forest Soil	NPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK*
Ga0058885_12390291	3300004116	Forest Soil	RLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK*
Ga0058901_14763571	3300004120	Forest Soil	NPNKERNFVTHVEADKPTSDPRTTSRAGASHYEYTERAYHDGE*
Ga0058901_15472441	3300004120	Forest Soil	NPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACDDGK*
Ga0058882_17380293	3300004121	Forest Soil	MIPNPNKERNFVTHVEADESASDPRAASRAGASNYVYPERACNHGE*
Ga0062386_1001182874	3300004152	Bog Forest Soil	FGLVTEVRLVIPNPNKERNCVTHVEADESAYDDPGPASRAGASNFIYSEFACHDDE*
Ga0062386_1001208504	3300004152	Bog Forest Soil	FGLVTEVRLVIPNPNKERNFVTHVEADESAYDDPGPANRAGASNYIYSERPRNDDE*
Ga0058899_101156741	3300004631	Forest Soil	VLIVRRRSTIGLVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK*
Ga0070735_100042576	3300005534	Surface Soil	MPFGHGHAAHDPNPNKERNCVTHVEANESASNARAASRAGASNYVYPERACNYDGE*
Ga0070731_107862283	3300005538	Surface Soil	VTHVEADESASDPGTPERTGASYHEYAERACDDGE*
Ga0116105_10078274	3300009624	Peatland	LVTEVRLVIPNPNKERNFATHVEADESAYNDPGPARRAGASYFIYSERTCHDDE*
Ga0116105_12461182	3300009624	Peatland	VIPNPNKERNCVTHVEADESASDPRTPGRTGASYYAYTEHACNYDGE*
Ga0116129_10213774	3300009633	Peatland	LVTQVRHVIPNPNKERNFVTHVEADKSASDAWAASRAGASNHVYPERACSYGQR
Ga0116101_11972942	3300009759	Peatland	LILRQRSTIRLVTQVRHVIPNPNKERNYVTHVEADESASDPWPARRARAASSIDSERASDGIE*
Ga0116130_12186622	3300009762	Peatland	LVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYP
Ga0126345_11243812	3300010858	Boreal Forest Soil	ASDPNPNKERNFLTHVEAHESAYDPWPARRAGASNHVYPEHSVNHGD*
Ga0126352_11174051	3300010859	Boreal Forest Soil	APDPNPNKERKFVTHVEADESAYDPWPASRAGTSNHVYPEHACNHGE*
Ga0126351_10348631	3300010860	Boreal Forest Soil	PDPNPNKERKFVTHVEADESAYDPWPASRAGTSNHVYPEHACNHGE*
Ga0126344_12041652	3300010866	Boreal Forest Soil	HIIPNPIKERNYVTHVEADESASDPRTPSGARASSTNEYTERASHDGE*
Ga0126356_113526391	3300010877	Boreal Forest Soil	IVFGHASAASDPNPKKERNFLTHVEAHESAYDPWPARRAGASNHVYPEHSCNHGD*
Ga0138545_1622592	3300011044	Peatlands Soil	IPNPNKERNYVTHVEADESASDPRADSRAGASNNVYPECACDDGE*
Ga0138567_11345992	3300011070	Peatlands Soil	ERNYVTHVEADESASDPRTSRRAGASYHEYAERACHNGE*
Ga0138526_11410481	3300011082	Peatlands Soil	QVRHVIPNPNKERNYVTHVEADESASDPRTSRRAGASYHEYAERACHNGE*
Ga0138573_12624991	3300011089	Peatlands Soil	HVIPNPNKERNYVTHVEADESASDPRTSRRAGASYHEYAERACHNGE*
Ga0150983_123358361	3300011120	Forest Soil	RDPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNHGE*
Ga0150983_159677031	3300011120	Forest Soil	RDPNPNKERNFVTHVEADESAYDPGPASGAGASNHVYSECPCAYGQ*
Ga0150983_161201341	3300011120	Forest Soil	NPNQERNFVTHVEADESASNARAASGAGASNYLKPERATNYHGE*
Ga0181511_14371114	3300016702	Peatland	VRHVIPNPNKERNYVTHVEADESASDSRAPSGARASNFVYTECACNHGE
Ga0181507_10670822	3300016705	Peatland	HVIPNPNKERNYVTHVEADESASDSRAPSGARASNFVYTECACNHGE
Ga0187847_1000142520	3300017948	Peatland	LVTEVRLVIPNPNKERNFATHVEADESAYNDPGPARRAGASYFIYSERTCHDDE
Ga0187781_100426222	3300017972	Tropical Peatland	MQIGHVHAARDPNPNKERNFVTHVEADESASNARAASRAGASNYVYPERACNYHGE
Ga0187875_100501001	3300018035	Peatland	VRLVIPNPNKERNFATHVEADESAYNDPGPARRAGASYFIYSERTCHDDE
Ga0187871_101365803	3300018042	Peatland	LVTQVRHVIPNPNKERNYVTHVEADESASDPRTPERTGASNHEYAERACDDGE
Ga0187871_107349481	3300018042	Peatland	VQFGLVTEVRLVIPNPNKERNFATHVEADESAYNDPGPARRAGASYFIYSERTCHDDE
Ga0187770_102660891	3300018090	Tropical Peatland	LVTQVRRVIPNPNSERNQLTHVEADKSASDPRAASRAGASNPYPERACND
Ga0184602_1065171	3300019161	Soil	RDPNPNKERKFVTHVEADESAYDPWPASRAGAFNYVYPERPYNYDE
Ga0184601_1432912	3300019183	Soil	VIPNPNKERNYVTHVEADESASDPRTPERTGASNHDYTERACNDGE
Ga0184584_1073182	3300019187	Soil	NFVTHVEADESAYDPWPSSRAGASDYAYPERACDDGK
Ga0184584_1166612	3300019187	Soil	DPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNYGE
Ga0184599_1021222	3300019188	Soil	DPNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0184585_1386212	3300019189	Soil	VIPNPNQERKYVTHVEADESASDPRSPGRAGASNHEYTERACHDGE
Ga0184600_1470291	3300019190	Soil	RDPNPNEERKFVTHVEADESAYDPWPASRAGASNHVYPERASN
Ga0187798_11343891	3300019275	Peatland	RVIPNPNSERNQLTHVEADKSASDPRAASRAGASNPYPERACNDGE
Ga0187800_18907091	3300019278	Peatland	RNFVTHVEADESASNARAASRAGASNYVYPERACNYHGE
Ga0210401_105308511	3300020583	Soil	MRRRSTIGLVTEVRLVIFNPNKERNFVTHVEADESAYDPWPSSRAGASDYAY
Ga0179584_11392831	3300021151	Vadose Zone Soil	PNPNKERNFATHVEADESAYDPWPASRAGASNHVYPERPNNHGE
Ga0210405_100079528	3300021171	Soil	LVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0210396_106001901	3300021180	Soil	VISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0210394_1000133110	3300021420	Soil	MRRRSTIGLVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDG
Ga0210391_103432291	3300021433	Soil	FVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0242646_10210491	3300022502	Soil	RDPNPNKERNFVTHVEADKPTSDPRTTSRAGASHYEYTERAYHDGE
Ga0242647_10397211	3300022505	Soil	VIPNPNQERNYVTHVEADESASDPRSPGRAGASNHEYTERARHDGE
Ga0242647_10465342	3300022505	Soil	ISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0222728_10618661	3300022508	Soil	RDPNPNKERNFVTHVEADESAYDPGPASGAGASNHVYSECPCAYGQ
Ga0242649_10393282	3300022509	Soil	LISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0242649_10439541	3300022509	Soil	RHVISNPNKERNYVTHVEADESASDPWAPSGSRASNYEYTERACHDSQ
Ga0242659_10084763	3300022522	Soil	RLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0242663_10337262	3300022523	Soil	FVTHVEADESAYDPGPASGAGASNHVYSECPCAYGQ
Ga0242663_10954592	3300022523	Soil	VISNPNKERNFVTHVEADESANDPWPSRAGASDYAYPERACNDGK
Ga0242663_11130071	3300022523	Soil	PNKERNFVTHVEADESAYDPWPSSRARASNFIYSERASLNGK
Ga0242668_10786111	3300022529	Soil	RDPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNNGE
Ga0242658_10870961	3300022530	Soil	NPNKERNFVTHVEADESAYDPGPASGAGASNHVYSECPCAYGQ
Ga0242660_10773101	3300022531	Soil	ARDPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNHGE
Ga0242660_11025852	3300022531	Soil	VISNPNKERNFVTHAEADESAYDPWPSSRARASNFIYSERASLNGK
Ga0242655_103020011	3300022532	Soil	ARDPNPNKERNFVTHVEADESAYDPGPASGAGASNHVYSECPCAYGQ
Ga0242670_10663872	3300022708	Soil	FVTHVEADESAYDPWPASRAGTSNHVYPERPCNNGE
Ga0242671_10778771	3300022714	Soil	ERNYVTHVEADESASDPRAASRAGASNYVYPERACNDGE
Ga0242673_10687432	3300022716	Soil	IGLVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYDYSKRACNDGK
Ga0242666_11276701	3300022721	Soil	HVISNPNKERNYVTHVEADESASDPWAPSGSRASNYEYTERACHDSQ
Ga0242657_10304192	3300022722	Soil	ERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0242665_100768662	3300022724	Soil	FGHASAARDPNPNKERNFVTHVEADESAYDPGPASGAGASNHVYSECPCAYGQ
Ga0242665_101487262	3300022724	Soil	DPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNNGE
Ga0242654_102734031	3300022726	Soil	PNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0247551_1041042	3300023552	Soil	NYVTHVEADESTSDPRAAGRTGASSHEYTERACHDGE
Ga0247553_1110822	3300023672	Soil	AARDPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNYGE
Ga0257154_10868851	3300026467	Soil	LFGHASAARDANPNEERKFVTHVEADESAYDPWTAIRAGASNHVYPERPCIYGE
Ga0209168_100032867	3300027986	Surface Soil	MPFGHGHAAHDPNPNKERNCVTHVEANESASNARAASRAGASNYVYPERACNYDGE
Ga0302156_103905372	3300028748	Bog	TQVRHVIPNPNKERNFVTHVEADESASDPRTPRRAGASNHEYSERISDNSD
Ga0302278_101504553	3300028866	Bog	GVQFSLVTQVRHVIPNPNKERNFVTHVEADESASDPRTPRRAGASNHEYSERISDNSD
Ga0222749_102976251	3300029636	Soil	PNPNQERNYVTHVEADESASDPRSPGRAGASNHEYTERACHDGE
Ga0302302_11541762	3300029997	Palsa	DCGVQFDLVTQVRHVIPNPIKERKFVTHVEADESTSDPRTASGTGTSDHAYPERACHNDG
Ga0210278_12142302	3300030596	Soil	FVTPNPNKERNFVTHVEADESAYDDPGPASRAGASNYIIYSERPCHDDE
Ga0210286_11979632	3300030597	Soil	NPNKERNFVTHVEADESASDPRAASRAGASNHVYSERACEYGE
Ga0210251_111117482	3300030624	Soil	LVISNPNKERNFVTHVEADESAYDPWPSSRAGASDSAYPERACNDGK
Ga0307482_11884791	3300030730	Hardwood Forest Soil	VRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0307482_11891362	3300030730	Hardwood Forest Soil	NFVTHVEADESAYDPWPASRAGTSNHVHPERLSRYGE
Ga0265462_125477121	3300030738	Soil	VISNPNKERNFVTHVEADESAYDPWPSSRAGASDYDYSQRACNDGK
Ga0265460_130498292	3300030740	Soil	VTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACDDGK
Ga0265459_138074531	3300030741	Soil	LVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0265461_138999652	3300030743	Soil	TEVRLVISNPIKERNLVTHVEADESAYDPWPSSRAGASDYDYPERACNDGK
Ga0265745_10153392	3300030759	Soil	RDPNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0265762_10496322	3300030760	Soil	LVTQVRHVIPNPNKERNYVTHVEADESASDPRTPERTGASNHEYAERARDDGE
Ga0265775_1085912	3300030762	Soil	ARDPNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0265742_10175672	3300030874	Soil	NPNKERNYVTHVEADESASDPRTPERTGASNHEYAERARDDGE
Ga0265777_1231091	3300030877	Soil	PNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0265772_1069021	3300030886	Soil	RHVIPNPTKERNYVTHVEADESTSDPRAAGRTGASRHEYTERACHDGE
Ga0265769_1173581	3300030888	Soil	PNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0302314_102321921	3300030906	Palsa	RLVIPNPNEERNFVTHVEADESAYDPWPASRARASDHVYPERARNDGQ
Ga0138296_13742431	3300030923	Soil	HASAASDPNPNKERNFVTHVEAHESAYDPWPARRAGASNHVHPEHSCNHGD
Ga0265740_10237632	3300030940	Soil	FGHGNAARDPNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0265771_10017471	3300031010	Soil	NPNKERNYVTHVEADESASDPRAPERTGASNHEYAERACDDGE
Ga0265744_1108402	3300031017	Soil	AARDPNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0310103_1357201	3300031614	Soil	HVISNPNKERNYVTHVEADESASDPWAPSGSRASNYEYTERACHDGE
Ga0310686_11050286217	3300031708	Soil	MRHVIPNPNKERTFIHVEADESASNSRAAGRAGASNYVYPERACDDGE
Ga0310686_1133959992	3300031708	Soil	RSTIGLVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRAGASDYAYPERACDDGK
Ga0310686_1134029181	3300031708	Soil	RSTIGLVTEVRLVISNPNKERNFVTHVEADESAYDPWPSSRARASNFIYSERPCNHVE
Ga0307474_113645812	3300031718	Hardwood Forest Soil	PNKERTVTYVEADESAYDPWTASRAGASHPICTERPRCYE
Ga0307475_109827652	3300031754	Hardwood Forest Soil	HASAARDPNPNKERNFVTHVEADESAYDPWPASRAGASNHVYPEHASKHGE
Ga0307478_103632491	3300031823	Hardwood Forest Soil	KERNFVTHVEADESAYDPWPASRAGASNHVYPEHASKHGE
Ga0316049_1068843	3300031866	Soil	NFVTHVEADESAYDPWPSSRAGASDYAYPERACNDGK
Ga0316029_1069712	3300031870	Soil	KMRHVIPNPNKERTFIHVEADESASNSRAAGRAGASNYVYPERACDDGE
Ga0316036_1120372	3300031871	Soil	IPNPNKERTFIHVEADESASNSRAAGRAGASNYVYPERACDDGE
Ga0316035_1111772	3300031955	Soil	VIPNPNKERTFIHVEADESASNSRAAGRAGASNYVYPERACDDGE
Ga0316035_1183621	3300031955	Soil	NYVTHVEADESASDPRTPERTGASNHDYTERACNDGE
Ga0316052_1073331	3300032028	Soil	IPNPTKERNYVTHVEADESTSDPRAAGRTGASSHEYTERACHDGE
Ga0316052_1078752	3300032028	Soil	RLVISNPNKERNFVTHVEADESAYDPWPASRAGASNHVYPERPCNYGE
Ga0316051_10072191	3300032119	Soil	RDPNPNEERKFVTHVEADESAYDPWPASRAGTSNHVYPERPCNYGE
Ga0316053_1085451	3300032120	Soil	RDPNPNEERKFVTHVEADESAYDPWPASRAGASNHVYPERPCNYGE
Ga0316053_1127541	3300032120	Soil	SNPNKERNYVTHVEADESASDPWAPSGSRASNYEYTERACHDGE
Ga0316040_1096932	3300032121	Soil	PNPNKERNYVTHVEADESASDPRTPERTGASNHEYAERACDDGE
Ga0348332_102883211	3300032515	Plant Litter	ARDPNPNKERNFVTHVEADESAYDPWPASRAGASNHVFPERAFNDGE
Ga0348332_113106431	3300032515	Plant Litter	NPNKERNFVTHVEADESAYDPWPSSRTRASNFIYPERASLNGK
Ga0348332_121217172	3300032515	Plant Litter	VIPNPTKERNYVTHVEADESTSDPRAAGRTGASSHEYTERACHDGE
Ga0348332_128763221	3300032515	Plant Litter	IPNPNKERNYVTHVEADESASDPRTPERTGASNHEYAERACDDGE
Ga0335073_116321201	3300033134	Soil	MPFGHAHAARDPNPNKERNFVTHVEADESASNARAASRAGASNYVYPERACNNHGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064310

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences