Basic Information | |
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Family ID | F064208 |
Family Type | Metagenome |
Number of Sequences | 129 |
Average Sequence Length | 43 residues |
Representative Sequence | MVWRISKEITKKDITDTQKTALYGLVLIVPLGLLAWGIEHLQYIG |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 129 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 84.25 % |
% of genes near scaffold ends (potentially truncated) | 37.98 % |
% of genes from short scaffolds (< 2000 bps) | 86.82 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (45.736 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine (26.357 % of family members) |
Environment Ontology (ENVO) | Unclassified (88.372 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (90.698 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 58.90% β-sheet: 0.00% Coil/Unstructured: 41.10% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Marine Marine Seawater Marine Aqueous Seawater Sackhole Brine Freshwater To Marine Saline Gradient Marine Seawater Estuarine Marine Estuarine Marine Estuarine Water Pelagic Marine Seawater Pelagic Marine Marine Seawater |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
GS312G0146KB_00044060 | 2189573027 | Marine Estuarine | MVWRISKEITKKDITDTQKTALYGLIMIVPLGLLAWAIEHIRIV |
DelMOSum2010_100177303 | 3300000101 | Marine | MVWRISKESTEKEVTDTQKTAFYGLVLIIPLGLLAWGIEHLQYIG* |
DelMOSum2010_100402251 | 3300000101 | Marine | MVWRISKEITKKEVTDTQKTALYGLILIVPLALLAWGIEHLQYIG |
DelMOSum2010_101441223 | 3300000101 | Marine | MVWRISKEITKKDITDTQKTALYGLILIVPLALLAWGIEHLQYIG* |
DelMOSum2010_101900522 | 3300000101 | Marine | MVWRISKESTEQERTDTQKTGLYGLVLIVPLGLLAWGIEHLQYIG* |
DelMOSum2010_102048641 | 3300000101 | Marine | MVWRISKEITKKDITDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG* |
DelMOSum2011_100345652 | 3300000115 | Marine | MVWRISKESTEKEVTDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG* |
DelMOSum2011_100433232 | 3300000115 | Marine | MVWRISKEITKKDITDTQKTALYGLILIVPLGLLAWAIEHIRIV* |
DelMOSum2011_101357313 | 3300000115 | Marine | MVWRISEKITKKNATDAQKTAYYGLLLIVPMGLIAWAIEHIRIV* |
DelMOSpr2010_101996962 | 3300000116 | Marine | MVWRISKEITKKQVSDTQKTALYGLIMIVPLGLLAWAIEHIRIV* |
JGI24006J15134_100320285 | 3300001450 | Marine | MVWRISNKVSKKEISDTQKTGLYGLVIIVPLALLAWGIEHLQYIG* |
JGI26238J51125_10728401 | 3300003478 | Marine | MVWRISKEITKKXXTDTQKTALYGLILIVPLALLAWGIEHLQYIG* |
Ga0066605_102657821 | 3300004279 | Marine | MVWRISKEITKKEVSDTQKTALYGLILIVPLALLAWGIEHLQYIG* |
Ga0075466_10819362 | 3300006029 | Aqueous | MVWRISKEITKKQVSDTQKTALYGLVMIVPLGLLAWAIEHIRIV* |
Ga0075466_11237772 | 3300006029 | Aqueous | MVWRISKEITKKQVTDTQKTALYGLVMIVPLGLLAWAIEHIRIV* |
Ga0098037_11840292 | 3300006737 | Marine | MVWRISKESTEEERTDLQKTGLYGLLFIVPLGLLAWGIEHLQYIG* |
Ga0098048_10727512 | 3300006752 | Marine | MVWRISKQVTKKEITDTQKTALYGLIIIVPLGLLAWGIEHLQYIG* |
Ga0098055_13977171 | 3300006793 | Marine | ITKKDITDTQKTALYGLIIIVPLGLLAWAIEHIRIV* |
Ga0098060_10229833 | 3300006921 | Marine | MVWRISKEITKKDITDTQKTALYGLIIIIPLGLLAWALEH |
Ga0098060_11188072 | 3300006921 | Marine | MVWRISKESTEKEVTDTQKTAFYGLVIIIPMGLIAWAIEHIRIV* |
Ga0098060_12197472 | 3300006921 | Marine | MVWRISKEITKKDITDTQKTALYGLIIIVPLGLLAWALEHIRFI* |
Ga0098051_11767891 | 3300006924 | Marine | MVWRISKEITKKEVTDTQKTALYGLIIIVPLGLLAWGIEHLQYIG* |
Ga0098036_12210211 | 3300006929 | Marine | IFMVWRISKESTEEERTDLQKTGLYGLLFIVPLGLLAWGIEHLQYIG* |
Ga0098036_12784472 | 3300006929 | Marine | MVWRISKEITKKDITDTQKTAFYGLVIIIPMGLIAWGIEHLQYIG* |
Ga0070747_10250654 | 3300007276 | Aqueous | MVWRISKEITKKQVSDTQKTALYGLILIVPLALLAWGIEHLQ |
Ga0105020_10653094 | 3300007514 | Marine | MVWRISSKVSDEETKENLRKTGLYGTGIILTLGLLAWAIEHIRIV* |
Ga0102817_10711882 | 3300007555 | Estuarine | MVWRISKEITKKEVTDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG* |
Ga0102817_11022562 | 3300007555 | Estuarine | MVWRISKEITKKDITDTQKTALYGLILIVPLALLAWGIE |
Ga0110931_10276193 | 3300007963 | Marine | MVWRISKEITKKEVTDTQKTALYGLIIIVPLGLLAWALEHIRFI* |
Ga0102816_10298233 | 3300008999 | Estuarine | MVWRISKEITKKQVTDTQKTAFYGLVMIVPLGLLAWAIEHIRIV* |
Ga0102810_11777922 | 3300009002 | Estuarine | MVWRISKEITKKQVTDTQKTALYGLILIVPLALLAWGIEHLQYIG* |
Ga0115566_100795671 | 3300009071 | Pelagic Marine | MVWRISKEITKKEATDAQKTAYYGLVLIIPLGLLAWGIEHLKYIG* |
Ga0115566_104308981 | 3300009071 | Pelagic Marine | MVWRISKEITKKQATDAQKTAYYGLLLIVPLGLLAWAIEHIRIV* |
Ga0115566_104648552 | 3300009071 | Pelagic Marine | MVWRISKEITKKQVTDTQKTALYGLVMIVPLGLLAWAI |
Ga0115566_105461422 | 3300009071 | Pelagic Marine | MVWRISKEITKKQVTDTQKTALYGLIMIVPLGLLAWAIEHIRIV* |
Ga0115566_107085711 | 3300009071 | Pelagic Marine | MVWRISKEITKKQATDAQKTAYYGLLLIIPLGLLAW |
Ga0115549_10604592 | 3300009074 | Pelagic Marine | MVWRISEKITKKNATDAQKTALYGLLLIVPMGLIAWAIEHIRIV* |
Ga0115552_10789341 | 3300009077 | Pelagic Marine | MVWRISEKITKKNATDAQKTAYYGLLLIVPMGLIAWAIEHIRI |
Ga0115552_12693952 | 3300009077 | Pelagic Marine | MVWRISEVKSKKQVTDTQKTAYYGLLMIVPLGLLAWGIEHLQYIG* |
Ga0114994_110150672 | 3300009420 | Marine | KKQVTDTQKTAFYGLVMIVPLGLLAWAIEHIRIV* |
Ga0115546_12002921 | 3300009435 | Pelagic Marine | MVWRISKEIKKKEATEAQKTAYYGLVLIIPLGLLAWGIEHLKYIG* |
Ga0115561_12741933 | 3300009440 | Pelagic Marine | RISKEITKKQATDAQKTAYYGLLLIIPLGLLAWAIEHIRIV* |
Ga0115561_13060242 | 3300009440 | Pelagic Marine | MVWRISKEITKKDITDTQKTALYGLIMIVPLGLLAWAIEHIRIV* |
Ga0115007_112331061 | 3300009441 | Marine | KEITKKDITDTQKTALYGLILIVPLGLLAWAIEHIRIV* |
Ga0115563_11377581 | 3300009442 | Pelagic Marine | MVWRISEKITKKNATDAQKTAYYGLLLIVPLGLLAWAIEHIRIV* |
Ga0115563_12788341 | 3300009442 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLVLIIPLGLLAWGIEHLQYIG* |
Ga0115553_10454621 | 3300009445 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLVFIIPLGLLAWGIEH |
Ga0115560_12488232 | 3300009447 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLILIVPLALLAWGIEHLQYIG* |
Ga0115558_13267691 | 3300009449 | Pelagic Marine | MVWRISKEITKKQVTDTQKTALYGLIMIVPLGLLAWAIEHIRI |
Ga0115558_13492141 | 3300009449 | Pelagic Marine | MVWRISKEITKKDITDTQKTAYYGLLMIVPLGLLAWGIEHLQYIG* |
Ga0115554_12110181 | 3300009472 | Pelagic Marine | MVWRISKEITKKQATDAQKTAYYGLLLIVPLGLLAWAIEH |
Ga0115554_13572661 | 3300009472 | Pelagic Marine | ITKKQATDAQKTAYYGLLLIVPLGLLAWAIEHIRIV* |
Ga0115571_11262324 | 3300009495 | Pelagic Marine | VWRISKEITKKDITDTQKTALYGLIMIVPLGLLAWAIEHIRIV* |
Ga0115570_101101762 | 3300009496 | Pelagic Marine | MVWRISKEITKKEVTDTQKTAYYGLLMIVPLGLLAWGIEHLQY |
Ga0115570_101239243 | 3300009496 | Pelagic Marine | MVWRISKEITKKDITDTQKTALYGLVLIVPLGLLAWGIEHLQYIG* |
Ga0115570_101622122 | 3300009496 | Pelagic Marine | MVWRISKEITKKEVTDTQKTALYGLILIVPLALLAWGIEHLQYIG* |
Ga0115569_103773511 | 3300009497 | Pelagic Marine | KEITKKDITDTQKTAYYGLLMIVPLALLAWGIEHLQYIG* |
Ga0115572_100756073 | 3300009507 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLVLIVPLGLLAWGIE |
Ga0115572_103184722 | 3300009507 | Pelagic Marine | MVWRISKEITKKEATDAQKTAYYGLLLIIPLGLLAWAIEHIRIV* |
Ga0115572_104092402 | 3300009507 | Pelagic Marine | IFMVWRISKEITKKDITDTQKTAYYGLLMIVPLALLAWGIEHLQYIG* |
Ga0115567_101749141 | 3300009508 | Pelagic Marine | MVWRISKEITKKQATDAQKTAYYGLLLIVPLGLLAWAIEHIRI |
Ga0115567_102256893 | 3300009508 | Pelagic Marine | MVWRISKEITKKEITDTQKTAYYGLVLIVPLGLLAWAIEHIRIV* |
Ga0115006_118037462 | 3300009544 | Marine | MVWRISKESTEQERTDTQKTGLYGLVLIVPLALLAWAIEHLQYIG* |
Ga0098059_11714282 | 3300010153 | Marine | MVWRISKESTEKEVTDTQKTAFYGLVIIIPMGLIAWAIEHIRI |
Ga0098059_12790861 | 3300010153 | Marine | KEITKKEVTDTQKTALYGLIIIVPLGLLAWALEHIRIV* |
Ga0098059_12932621 | 3300010153 | Marine | MVWRISKEITKKEVTDTQKTAFYGLVIIIPMGLIAWAIEHIRIV* |
Ga0133547_113523492 | 3300010883 | Marine | MVWRISKERTEKEISDTQKTAYYGLALIIPLGLLAWGIEHLQYIG* |
Ga0151671_10189012 | 3300011253 | Marine | SKEITKKDVTDTQKTAYYGLVLIVPLGLLAWGIEHLQYIG* |
Ga0151677_10081561 | 3300011258 | Marine | MVWRISDKSTEKERTDLQKTGLYGLLFIVPMGLIAWGIEHLQYIG* |
Ga0129327_103240192 | 3300013010 | Freshwater To Marine Saline Gradient | MVWRISKEITKKQVTDTQKTALYGLILIVPLALLAWGIEHL |
Ga0129327_104066112 | 3300013010 | Freshwater To Marine Saline Gradient | MVWRISKEITKKQVTDTQKTALYGLVMIVPLGLLAWAIE |
Ga0181404_11192052 | 3300017717 | Seawater | MVWRISKEITKKEITDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0181396_11107021 | 3300017729 | Seawater | RISKEITKKQVTDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0181396_11121272 | 3300017729 | Seawater | MVWRISKESTEKEVTDTQKTAFYGLVLIVPLGLLAWGIE |
Ga0181416_11480212 | 3300017731 | Seawater | MVWRISKEITKKDITDTQKTALYGLILIVPLALLAWGIEHL |
Ga0181421_11151043 | 3300017741 | Seawater | VWRISKEITKKDITDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0181397_10374442 | 3300017744 | Seawater | MVWRISKEITKKDITDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG |
Ga0181393_10802572 | 3300017748 | Seawater | MVWRISKEITKKDITDTQKTALYGLVLIVPLALLAWAIEHIRIV |
Ga0181392_11448792 | 3300017749 | Seawater | MVWRISKEITKKEITDTQKTALYGLLLIVPLALLAWGIEHLQYIG |
Ga0181407_10240643 | 3300017753 | Seawater | MVWRISKESTEKEVTDTQKTAFYGLVLIVPLALLAWGIEHLQYIG |
Ga0181408_11396671 | 3300017760 | Seawater | MVWRISKEITKKQVTDTQKTALYGLVLIVPLALLAWGIEHLQYIG |
Ga0181422_10634271 | 3300017762 | Seawater | KEIFMVWRISKEITKKQVTDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0187220_11505294 | 3300017768 | Seawater | VWRISKEITKKDISDTQNTALYGLILIVPLALLAWGIEHLQYIG |
Ga0181425_11617633 | 3300017771 | Seawater | MVWRISEVKSKKQVTDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0181430_11326482 | 3300017772 | Seawater | MGWRISKESTEKEVTDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG |
Ga0181395_10485942 | 3300017779 | Seawater | MVWRISKEITKKDITDTQKTALYGLILIVPLALLAWG |
Ga0194029_10332742 | 3300019751 | Freshwater | MVWRISKEITKKDITDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0206125_101030861 | 3300020165 | Seawater | MVWRISKEITKKQVTDTQKTAYYGLLMIVPLGLLAWGIEHLQYIG |
Ga0206128_11617042 | 3300020166 | Seawater | MVWRISKEITKKQVTDTQKTALYGLIMIVPLGLLAWAIEHIRIV |
Ga0211504_10727332 | 3300020347 | Marine | MVWRISKEITKKDITDTQKTALYGLIIIVPLGLLAWALEHIRIV |
Ga0211677_100359701 | 3300020385 | Marine | MVWRISKEITKKQVTDTQKTALYGLILIVPLALLAWGIE |
Ga0211677_104222242 | 3300020385 | Marine | MVWRISKESTEKEVTDTQKTAFYGLVLIIPLGLLAWGIEHLQYIG |
Ga0211687_101820432 | 3300020396 | Marine | MVWRISKERTEKEISDTQKTAYYGLALIIPLGLLAWGIEHLQYIG |
Ga0211687_102620432 | 3300020396 | Marine | MVWRISKEITKKQVTDTQKTAFYGLVMIVPLGLLAWAIEHIRIV |
Ga0211554_102919203 | 3300020431 | Marine | MVWRISKEITKKQVSDTQKTALYGLIMIVPLGLLAWAIEHIRIV |
Ga0211545_102607282 | 3300020452 | Marine | MVWRISKEITKKEATDAQKTAYYGLVLIIPLGLLAWGIEHLKYIG |
Ga0206126_101487702 | 3300020595 | Seawater | MVWRISKEITKKQATDAQKTAYYGLLLIVPLGLLAW |
Ga0222717_101203192 | 3300021957 | Estuarine Water | MVWRISKEITKKQVTDTQKTALYGLILIVPLALLAWGIEHLQYIG |
(restricted) Ga0233433_102683853 | 3300022931 | Seawater | SKEITKKDITDTQKTAYYGLLLIVPLALLAWGIEHLQYIG |
(restricted) Ga0233433_103259712 | 3300022931 | Seawater | MVWRISKQVTKKEITDTQKTALYGLIIIVPLGLLAWGIEHLQYIG |
(restricted) Ga0233438_100175063 | 3300024255 | Seawater | MVWRISKEITKKDITDTQKTALYGLVLIVPLALLAWAIEHLQYIG |
(restricted) Ga0233438_101505132 | 3300024255 | Seawater | MVWRISKEITKKDITDTQKTAYYGLLLIVPLALLAWGIEHLQYIG |
(restricted) Ga0233438_102248451 | 3300024255 | Seawater | MVWRISKEITKKQVSDTQKTAYYGLLLIVPLALLA |
(restricted) Ga0233444_101954912 | 3300024264 | Seawater | MVWRISKEITKKDITDTQKTALYGLILIVPLGLLAWAIEHIRIV |
(restricted) Ga0233444_103474721 | 3300024264 | Seawater | MVWRISKEITKKQVTDTQKTALYGLILIVPLALLAW |
(restricted) Ga0233444_104266681 | 3300024264 | Seawater | KEITKKDITDTQKTALYGLILIVPLALLAWGIEHLQYIG |
Ga0208298_10964902 | 3300025084 | Marine | MVWRISKERTEKEITDLQKTGLYGTGIILTLSFLAWAIEHIRIV |
Ga0208669_10244101 | 3300025099 | Marine | MVWRISKEITKKDITDTQKTAFYGLVIIIPMGLIAW |
Ga0208919_12570372 | 3300025128 | Marine | MVWRISKEITKKDITDTQKTALYGLIIIVPLGLLAWGIEHLQYIG |
Ga0209634_10894234 | 3300025138 | Marine | MVWRISNKVSKKEISDTQKTGLYGLVIIVPLALLAWGIEHLQYIG |
Ga0209645_100192611 | 3300025151 | Marine | MVWRISKERTEKEITDLQKTGLYGTGIILTLSFLAWAIEHIRII |
Ga0208643_10119495 | 3300025645 | Aqueous | MVWRISKESTEKEVTDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG |
Ga0208134_11211541 | 3300025652 | Aqueous | MVWRISKEITKKQVTDTQKTALYGLVMIVPLGLLAWAIEHIRIV |
Ga0209251_10256664 | 3300025668 | Marine | MVWRISKEITKKDITDTQKTALYGLILIVPLALLAW |
Ga0209532_11432342 | 3300025696 | Pelagic Marine | MVWRISEKSTEEERTDLQKTGLYGLLIVVPLGLLAWGIEHLQYIG |
Ga0209602_11870472 | 3300025704 | Pelagic Marine | MVWRISKEITKKQATDAQKTAYYGLLLIVPLGLLAWAIEHIRIV |
Ga0209305_11090511 | 3300025712 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLVLIVPLALLAWGIEHLQY |
Ga0209362_10596321 | 3300025770 | Marine | MVWRISKEITKKQVTDTQKTALYGLILIVPLALLA |
Ga0209307_11413402 | 3300025832 | Pelagic Marine | MVWRISKEITKKDITDTQKTAYYGLLMIVPLGLLAWGIEHLQYIG |
Ga0209308_100529141 | 3300025869 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLVLIVPLALLAWGIEHLQ |
Ga0209309_101443342 | 3300025881 | Pelagic Marine | MVWRISKEITKKQVSDTQKTALYGLIMIVPLGLLAWA |
Ga0209630_104832021 | 3300025892 | Pelagic Marine | MVWRISKEITKKDITDTQKTAFYGLVLIIPLGLLAWGIEHLQYIG |
Ga0208941_10472892 | 3300027077 | Marine | MVWRISKEITKKQVTDTQKTALYGLILIVPLGLRAWGIEHLQYIG |
Ga0228674_11718002 | 3300028008 | Seawater | MVWRISKEITKKDITDTQKTALYGLVLIVPLALLAWAIEHIRFI |
Ga0228674_12900732 | 3300028008 | Seawater | MVWRISKEITKKEITDTQKTALYGLLLIVPLALLAWAIEHIRIV |
Ga0257126_12504241 | 3300028287 | Marine | MVWRISKEITKKEVTDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG |
Ga0307488_100713284 | 3300031519 | Sackhole Brine | MVWRISKESTEKEVTDTQKTAFYGLVLIIPLGLLAWGIEHLQYI |
Ga0315331_110845672 | 3300031774 | Seawater | ISKESTEKEVTDTQKTAFYGLVLIVPLGLLAWGIEHLQYIG |
Ga0315316_103983223 | 3300032011 | Seawater | MVWRISKESTEQERTDTQKTGLYGLVLIVPLGLLAWGIEHLQYIG |
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