NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F064076

Metagenome / Metatranscriptome Family F064076

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F064076
Family Type Metagenome / Metatranscriptome
Number of Sequences 129
Average Sequence Length 46 residues
Representative Sequence PNDKALQAVLERETDPKVKNFAPADFVDASFFREIEKSGLIEQLYRK
Number of Associated Samples 118
Number of Associated Scaffolds 129

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.33 %
% of genes near scaffold ends (potentially truncated) 96.90 %
% of genes from short scaffolds (< 2000 bps) 93.02 %
Associated GOLD sequencing projects 114
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (94.574 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.853 % of family members)
Environment Ontology (ENVO) Unclassified
(34.109 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(42.636 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.33%    β-sheet: 0.00%    Coil/Unstructured: 58.67%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 129 Family Scaffolds
PF00903Glyoxalase 52.71
PF12681Glyoxalase_2 10.08
PF00005ABC_tran 3.88
PF03401TctC 1.55
PF13379NMT1_2 1.55
PF02371Transposase_20 1.55
PF03992ABM 1.55
PF13551HTH_29 1.55
PF04909Amidohydro_2 1.55
PF02738MoCoBD_1 1.55
PF05618Zn_protease 1.55
PF07040DUF1326 0.78
PF01370Epimerase 0.78
PF13343SBP_bac_6 0.78
PF00158Sigma54_activat 0.78
PF13541ChlI 0.78
PF16916ZT_dimer 0.78
PF04972BON 0.78
PF13701DDE_Tnp_1_4 0.78
PF03454MoeA_C 0.78
PF09084NMT1 0.78
PF08007JmjC_2 0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 129 Family Scaffolds
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 1.55
COG3547TransposaseMobilome: prophages, transposons [X] 1.55
COG0303Molybdopterin Mo-transferase (molybdopterin biosynthesis)Coenzyme transport and metabolism [H] 0.78
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 0.78
COG2850Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domainTranslation, ribosomal structure and biogenesis [J] 0.78
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 0.78
COG5588Uncharacterized conserved protein, DUF1326 domainFunction unknown [S] 0.78


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms94.57 %
UnclassifiedrootN/A5.43 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2199352025|deepsgr__Contig_3347All Organisms → cellular organisms → Bacteria2938Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c1970270All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300000044|ARSoilOldRDRAFT_c015534All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300000956|JGI10216J12902_100568018All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300004463|Ga0063356_103955916All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300004463|Ga0063356_105007231All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300004479|Ga0062595_100406426All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300004480|Ga0062592_100044914All Organisms → cellular organisms → Bacteria → Proteobacteria2343Open in IMG/M
3300004779|Ga0062380_10300006All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300005093|Ga0062594_103002088All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300005180|Ga0066685_10416345All Organisms → cellular organisms → Bacteria933Open in IMG/M
3300005180|Ga0066685_10563023All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300005328|Ga0070676_10252693All Organisms → cellular organisms → Bacteria → Acidobacteria1177Open in IMG/M
3300005330|Ga0070690_100057102All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2505Open in IMG/M
3300005332|Ga0066388_104492590All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300005339|Ga0070660_100234429All Organisms → cellular organisms → Bacteria → Proteobacteria1494Open in IMG/M
3300005353|Ga0070669_100276733All Organisms → cellular organisms → Bacteria → Proteobacteria1344Open in IMG/M
3300005364|Ga0070673_101574266All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300005457|Ga0070662_101380491All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300005543|Ga0070672_101537621All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300005546|Ga0070696_100608674All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300005546|Ga0070696_100832328All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300005548|Ga0070665_101728195All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300005549|Ga0070704_100190573All Organisms → cellular organisms → Bacteria → Proteobacteria1648Open in IMG/M
3300005563|Ga0068855_102461144Not Available518Open in IMG/M
3300005718|Ga0068866_10926117All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005829|Ga0074479_10469767Not Available521Open in IMG/M
3300005844|Ga0068862_101691534All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300005888|Ga0075289_1071655All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300006169|Ga0082029_1090145All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300006237|Ga0097621_100402762All Organisms → cellular organisms → Bacteria → Proteobacteria1225Open in IMG/M
3300006800|Ga0066660_11129962All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300006806|Ga0079220_10081606All Organisms → cellular organisms → Bacteria → Proteobacteria1625Open in IMG/M
3300006845|Ga0075421_100545611All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1370Open in IMG/M
3300006854|Ga0075425_102717242All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300006854|Ga0075425_103178044All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300007076|Ga0075435_101389596All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300007258|Ga0099793_10221971All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria909Open in IMG/M
3300009087|Ga0105107_11335510All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300009111|Ga0115026_10644123All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium810Open in IMG/M
3300009147|Ga0114129_10152213All Organisms → cellular organisms → Bacteria3165Open in IMG/M
3300009147|Ga0114129_11845974All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300009156|Ga0111538_13632694All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300009157|Ga0105092_10005377All Organisms → cellular organisms → Bacteria6788Open in IMG/M
3300009167|Ga0113563_10452269All Organisms → cellular organisms → Bacteria1386Open in IMG/M
3300009444|Ga0114945_10394800All Organisms → cellular organisms → Bacteria824Open in IMG/M
3300009609|Ga0105347_1029672All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1903Open in IMG/M
3300009610|Ga0105340_1130709All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300009610|Ga0105340_1320402All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300009818|Ga0105072_1004729All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2273Open in IMG/M
3300010043|Ga0126380_11774131Not Available557Open in IMG/M
3300010045|Ga0126311_11495549All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300010046|Ga0126384_12059736All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300010303|Ga0134082_10089674All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300010336|Ga0134071_10094861All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300010358|Ga0126370_10414288All Organisms → cellular organisms → Bacteria1112Open in IMG/M
3300010358|Ga0126370_11865565All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300010362|Ga0126377_11067507All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300010362|Ga0126377_11687957Not Available708Open in IMG/M
3300010371|Ga0134125_12960642All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300010375|Ga0105239_11598303All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300010398|Ga0126383_13516298All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300010401|Ga0134121_13255933All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300011420|Ga0137314_1083818All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300011444|Ga0137463_1223644All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300012034|Ga0137453_1016690All Organisms → cellular organisms → Bacteria1123Open in IMG/M
3300012035|Ga0137445_1058399All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300012167|Ga0137319_1058235All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300012199|Ga0137383_10440037All Organisms → cellular organisms → Bacteria955Open in IMG/M
3300012209|Ga0137379_10758680All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300012350|Ga0137372_10260406All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1360Open in IMG/M
3300012353|Ga0137367_10561032All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300012360|Ga0137375_11162284All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300012510|Ga0157316_1017419All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300012515|Ga0157338_1056902All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300012517|Ga0157354_1018778All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300012519|Ga0157352_1003527All Organisms → cellular organisms → Bacteria1350Open in IMG/M
3300012685|Ga0137397_10939129All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300012895|Ga0157309_10339366All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300012901|Ga0157288_10048176All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300012961|Ga0164302_11718686All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012972|Ga0134077_10192112All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300012989|Ga0164305_11862505All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300014308|Ga0075354_1036304Not Available859Open in IMG/M
3300014326|Ga0157380_10580316All Organisms → cellular organisms → Bacteria1105Open in IMG/M
3300014879|Ga0180062_1164807All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium509Open in IMG/M
3300014968|Ga0157379_10497293All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300015372|Ga0132256_100966803All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300015374|Ga0132255_104997267All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300018027|Ga0184605_10489920Not Available536Open in IMG/M
3300018082|Ga0184639_10085320All Organisms → cellular organisms → Bacteria → Proteobacteria1662Open in IMG/M
3300018082|Ga0184639_10125089All Organisms → cellular organisms → Bacteria1363Open in IMG/M
3300018083|Ga0184628_10036863All Organisms → cellular organisms → Bacteria2451Open in IMG/M
3300018422|Ga0190265_13642535Not Available514Open in IMG/M
3300018466|Ga0190268_10935880All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium680Open in IMG/M
3300018466|Ga0190268_11971289All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300018469|Ga0190270_10542481All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1119Open in IMG/M
3300018481|Ga0190271_12067874All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium678Open in IMG/M
3300020003|Ga0193739_1124526All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300021080|Ga0210382_10184046All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300021344|Ga0193719_10036466All Organisms → cellular organisms → Bacteria2127Open in IMG/M
3300021411|Ga0193709_1073858All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300022563|Ga0212128_10516004All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300025796|Ga0210113_1021481All Organisms → cellular organisms → Bacteria1328Open in IMG/M
3300025899|Ga0207642_10772353All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300025906|Ga0207699_10910811All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300025910|Ga0207684_10816429All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300025916|Ga0207663_10728393All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300025959|Ga0210116_1010901All Organisms → cellular organisms → Bacteria1642Open in IMG/M
3300026095|Ga0207676_12324487All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300026118|Ga0207675_102052682All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300026538|Ga0209056_10552349All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300027682|Ga0209971_1018992All Organisms → cellular organisms → Bacteria1632Open in IMG/M
3300027722|Ga0209819_10005987All Organisms → cellular organisms → Bacteria3882Open in IMG/M
3300027765|Ga0209073_10230427All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300027778|Ga0209464_10136186All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300027907|Ga0207428_10567064All Organisms → cellular organisms → Bacteria820Open in IMG/M
3300027909|Ga0209382_11117059All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300028420|Ga0210366_10497692All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300031184|Ga0307499_10130171All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300031229|Ga0299913_11078014All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300031719|Ga0306917_11034139All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300031854|Ga0310904_11330328All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300032005|Ga0307411_10906073All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300032144|Ga0315910_10307847All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300033513|Ga0316628_101066877All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300034115|Ga0364945_0020147All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1746Open in IMG/M
3300034150|Ga0364933_036433All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1206Open in IMG/M
3300034150|Ga0364933_037175All Organisms → cellular organisms → Bacteria1194Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.85%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.98%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.43%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.10%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment2.33%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.33%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.33%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.33%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment1.55%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.55%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs1.55%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.55%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil1.55%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.55%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.55%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.55%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.55%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.55%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.55%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.55%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland0.78%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.78%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.78%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.78%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.78%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.78%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.78%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.78%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.78%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.78%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.78%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.78%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.78%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.78%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.78%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.78%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.78%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.78%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352025Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOILEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000044Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil oldHost-AssociatedOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004779Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3FreshEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005888Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103EnvironmentalOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009087Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009444Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3EnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009818Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011420Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2EnvironmentalOpen in IMG/M
3300011444Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2EnvironmentalOpen in IMG/M
3300012034Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2EnvironmentalOpen in IMG/M
3300012035Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2EnvironmentalOpen in IMG/M
3300012167Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012510Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610Host-AssociatedOpen in IMG/M
3300012515Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610Host-AssociatedOpen in IMG/M
3300012517Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610EnvironmentalOpen in IMG/M
3300012519Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300014308Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014879Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10DEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021411Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300025796Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025959Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027722Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027778Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028420Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deepsgr_001916402199352025SoilMEVLPAPNEKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK
ICChiseqgaiiDRAFT_197027023300000033SoilLERLPAPNDKALQAVLERETDPKTKNFAPADFVDASFFREIEKSGLIEQLYRK*
ARSoilOldRDRAFT_01553423300000044Arabidopsis RhizosphereLPAPNDKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
JGI10216J12902_10056801813300000956SoilAVLDRENDPKLKVMSPADFTDTSFFRDIERSGLIEQLYRK*
Ga0063356_10395591613300004463Arabidopsis Thaliana RhizosphereKALQAVLDRENDAKLKTMSPADFVDASFTREIEKSGLIEQLYRK*
Ga0063356_10500723113300004463Arabidopsis Thaliana RhizosphereAVLERESDPKVKSLSPAEYVDASFFREIEKSGLIEKLYRK*
Ga0062595_10040642613300004479SoilKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0062592_10004491413300004480SoilNDRALQAVLDREADPKAKSAATADFVDASFFREIEKSGLIEKLYRK*
Ga0062380_1030000623300004779Wetland SedimentMERLPGPNEKALQAVLDRETDPKVKSFAVGDFIDGSFFRDIEKSGYVEQLYRK*
Ga0062594_10300208823300005093SoilSPAPNEKALQAVLERETDPKVKSFGPADFVDASFFKEIEKSDMIEQLYRK*
Ga0066685_1041634513300005180SoilPFPSDKALQALLDRESDPKAKSSKPADFFDVSFLREIEKSGLINQLYRK*
Ga0066685_1056302323300005180SoilPSDKALQALLDRESDPKAKSSKPADFIDVSFLKEIEKSGLINQLYRK*
Ga0070676_1025269313300005328Miscanthus RhizosphereKALRAVLDRETDPKVKSFSPADFVDASFFTEIEKSGLIEQLYRN*
Ga0070690_10005710253300005330Switchgrass RhizosphereLQAVLERETDPKTKSFGPADFVDASFFKEIEKSGMIEQLYRK*
Ga0066388_10449259013300005332Tropical Forest SoilAPNDKALQAVLERETDPKIKNFAPADFVDASFFREIEKSGMIEQLYRK*
Ga0070660_10023442913300005339Corn RhizosphereEKALRAVLDRETDPKVKSFSPADFVDASFSTEIEKSGLIEQLYRN*
Ga0070669_10027673313300005353Switchgrass RhizospherePAPNEKALQAVLERETDPKTKSFGPADFVDASFFKEIEKSGMIEQLYRK*
Ga0070673_10157426613300005364Switchgrass RhizosphereERSPAPNEKALQAVLERETDPKVKSFGPADFVDASFFKEIEKSDMIEQLYRK*
Ga0070662_10138049123300005457Corn RhizosphereAVLERETDPKTKSLSTADFVDATFFKEIEKSGMIEQLYRK*
Ga0070672_10153762113300005543Miscanthus RhizosphereQAVLEREGDPKAKSTPPAEFVDASFFREIAKSGMMEQLYRK*
Ga0070696_10060867423300005546Corn, Switchgrass And Miscanthus RhizosphereQAVLERETDPKTKSFGPADFVDASFFKEIEKSGMIEQLYRK*
Ga0070696_10083232833300005546Corn, Switchgrass And Miscanthus RhizosphereMETLPAPNDKALQAVLEREGDPKAKSTPPAEFVDASFFREIAKSGMMEQLYRK*
Ga0070665_10172819513300005548Switchgrass RhizosphereTDPKVKSFGPGDFVDASFFKEIEKSGMIEQLYRK*
Ga0070704_10019057313300005549Corn, Switchgrass And Miscanthus RhizosphereLMETLPAPNDKALQAVLEREGDPKAKSTPPAEFVDASFFREIAKSGMMEQLYRK*
Ga0068855_10246114423300005563Corn RhizosphereDEQADLLERSPAPNEKALQAVLERETDPKVKSFGPADFVDASFFKEIEKSGMIEQLYRK*
Ga0068866_1092611723300005718Miscanthus RhizosphereRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0074479_1046976723300005829Sediment (Intertidal)VDLLERLPGPNDKALQAVLDRENDAKLKTMSPADFVDASFSREIEKSGLIEQLYRK*
Ga0068862_10169153413300005844Switchgrass RhizosphereVLERETDPKTKSFGPGDFVDASFFKEIEKSGMIEQLYRK*
Ga0075289_107165513300005888Rice Paddy SoilTLPAPNEKALQAVLDRESDPKVRSSSPSEYVDASFFREIAKSGMIEQLYKK*
Ga0082029_109014513300006169Termite NestRSPAPNEKALQAVLEREADPKVKSLSPADFVDASFFREIERSGVIEQLYRK*
Ga0097621_10040276213300006237Miscanthus RhizospherePNDKALQAVLDREPDPKIKTLALTEFTDASFFKEIERSGLIEQLYRK*
Ga0066660_1112996213300006800SoilRETDPKAKSFSTADFIDAGFFREIEKSGMIEQLYRR*
Ga0079220_1008160613300006806Agricultural SoilERETDPKTKNFGPADFVDASFFKEIEKSGMIEQLYGK*
Ga0075421_10054561113300006845Populus RhizospherePAPNDKALQAVLERETDPKTKHFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0075425_10271724223300006854Populus RhizosphereLERSPAPNEKALQAVLERETDPKVKNLSPADFVDASFFREIEKSGMIEQLYRK*
Ga0075425_10317804423300006854Populus RhizosphereDLLERSPAPNEKALQAVLERETDPKTKSFGPADFVDASFFKEIEKSGMIEQLYRK*
Ga0075435_10138959623300007076Populus RhizosphereESDPKAKSAKPADFVDVSFLRDIEKSGMIEQLYRK*
Ga0099793_1022197113300007258Vadose Zone SoilAPNDKALQTVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0105107_1133551013300009087Freshwater SedimentLDRENDAKLKTMSPADFTDASFFRDIERSGLIEQLYRK*
Ga0115026_1064412323300009111WetlandEPDPKVKSFAIADFIDGSFFRELEKSGYVEQLYRK*
Ga0114129_1015221353300009147Populus RhizosphereLPAPNDRAIQAVLERESDPKLKNFSSADFIDASFFRDIEKSGMIEQLYRKKQSG*
Ga0114129_1184597423300009147Populus RhizosphereVLERENDPKVKNSAPADFVDASFLKEIEKSGMIEQLYRK*
Ga0111538_1363269413300009156Populus RhizosphereAPNDKALQAVLERETDPKTKNFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0105092_1000537783300009157Freshwater SedimentALQAVLERETDPKTKNFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0113563_1045226913300009167Freshwater WetlandsRLPGPNDKALQAVLDRENDAKLKTMSPADFTDASFFRDIERSGLIEQLYRK*
Ga0114945_1039480013300009444Thermal SpringsPNEKALRAVLDRESDPKVKSLAVGDFVEASFFRDIEKSGMIQQLYRR*
Ga0105347_102967213300009609SoilVDLLERLPAPNDKALQAVLERETDPKVKNFAPADFVDASFFREIEKSGLIEHLYRK*
Ga0105340_113070913300009610SoilAVLERESDSKVKGLPVADYVDASFFKDIEKSGLIEKLYR*
Ga0105340_132040223300009610SoilDLLERVPAPNEKALQAVLERENDAKLKTMSPADFIDASFFREIEKSGLIEQLYRK*
Ga0105072_100472913300009818Groundwater SandVLERETDPKTKNFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0126380_1177413113300010043Tropical Forest SoilKVLRAVLDRETDPKVKGFSTADFVDASFFKEIEKSGLIERLYRK*
Ga0126311_1149554913300010045Serpentine SoilNDRALQAVLDRENDPKLKVMSPADFTDASFFRDIERSGLIEQLYRK*
Ga0126384_1205973613300010046Tropical Forest SoilGKALQAVLERETDPKIKNFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0134082_1008967433300010303Grasslands SoilSDKALQALLDRESDPKAKSSKPADFFDVSFLKEIEKSGLINQLYRK*
Ga0134071_1009486113300010336Grasslands SoilSDPKAKISKPADFIDVSFLKEIEKSGLINQLYRK*
Ga0126370_1041428813300010358Tropical Forest SoilPAPNDKALQAVLERETDPKIKNFAPADFVDASFFREIEKSGMIEQLYRK*
Ga0126370_1186556513300010358Tropical Forest SoilQAVLERETDPKIKNFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0126377_1106750723300010362Tropical Forest SoilQAVLERETDPKIKNFAPADFVDASFFREIEKSGMIEQLYRK*
Ga0126377_1168795723300010362Tropical Forest SoilLEALPAPSDKVLRAVLDRETDPKVKSFSTADFVDASFFKEIERSGSIERLYRK*
Ga0134125_1296064213300010371Terrestrial SoilQADLLERSPAPNEKALQAVLERETDPKTKSFGPGDFVDASFFKEIEKSGMIEQLYRK*
Ga0105239_1159830313300010375Corn RhizosphereETDPKTKSFGPADFVDASFFKEIEKSGMLEQLYRK*
Ga0126383_1351629813300010398Tropical Forest SoilKVLRAVLDRETDPKVKSFPTADFVDASFFKEIERSGLIERLYRK*
Ga0134121_1325593313300010401Terrestrial SoilYQDQIDLIETLPAPNDKALRAVLDRETDPAVKNFSTADFVDASFFREIEKSGLIEQLYRK
Ga0137314_108381813300011420SoilKALQAVLERENDAKLKTMSPADFIDASFFREIEKSGLIEQLYRK*
Ga0137463_122364423300011444SoilALQAVLDRESDAKLKTMSPADFVDASFFREIEKSGLIEQLYRK*
Ga0137453_101669013300012034SoilRENDAKLKTMSPADFVDASFFREIEKSGLIEQLYRK*
Ga0137445_105839923300012035SoilEKALQAVLGRETDAKVKTMSPADFIDASFFREIEKSGLIEQLYRK*
Ga0137319_105823523300012167SoilLPGPNDKALQAVLDRENDAKLKTMSPADFTDASFFRDIERSGLIEQLYRK*
Ga0137383_1044003733300012199Vadose Zone SoilDLMEVLPAPNDKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0137379_1075868023300012209Vadose Zone SoilLLETLPAPNDKAIQAVLERESDARLKNSAPADFVDASFFRDIEKSGMIEQLYRK*
Ga0137372_1026040613300012350Vadose Zone SoilLEALPAPNDKAIQAVLERESDPKLKNSAPADFVDASFFKEIEKSGMIEQLYRK*
Ga0137367_1056103223300012353Vadose Zone SoilDLLEALPAPNDKAIQAVLERESDPKVKNPAPADFVDASFFKEIEKSGMIEQLYRK*
Ga0137375_1116228423300012360Vadose Zone SoilDLLEALPAPNDKAIQAVLERESDPKVKNSAPADFVDASFFKEIEKSGMIEQLYRK*
Ga0157316_101741923300012510Arabidopsis RhizosphereLQAVLERETDPKTKNFGPADFVDASFFKEIEKSGMLEQLYRK*
Ga0157338_105690223300012515Arabidopsis RhizosphereAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0157354_101877833300012517Unplanted SoilPNDKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0157352_100352713300012519Unplanted SoilDKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK*
Ga0137397_1093912913300012685Vadose Zone SoilTDPKVKTFSTEDFVDASFFKEIEKSGMIEQLYRR*
Ga0157309_1033936613300012895SoilEKALQAVLERETDPKTKNFGPADFVDASFFKEIEKSGMLEQLYRK*
Ga0157288_1004817613300012901SoilLERETDPKTKSFGPADFVDASFFKEIEKSGMLEQLYRK*
Ga0164302_1171868623300012961SoilVLDRETDPKVKNFAIADFVDGSFFKEIEKSGLVEQLYRK*
Ga0134077_1019211213300012972Grasslands SoilALLDRESDPKAKSSKPADFFDVSFLKEIEKSGLINQLYRK*
Ga0164305_1186250523300012989SoilMEPLPSPNDKALQAVLDREPDPKIKTLALTEFTDASFFKEIERSGLIEQLYRK*
Ga0075354_103630413300014308Natural And Restored WetlandsPAPNDKALQAVLERETDPKTKNFALSDFVDASFFREIEKSGLIEQLYRK*
Ga0157380_1058031613300014326Switchgrass RhizosphereETLPAPNDKALQAVLERESDPKAKSAPLAEFVDASFFREIAKSGMMEQLYRK*
Ga0180062_116480713300014879SoilLLERLPAPNDKALQAVLERETDPKTKSFAPADFVDASFFREIEKSGLIEQLYRK*
Ga0157379_1049729333300014968Switchgrass RhizosphereAPNEKALQAVLERETDPKTKNFGPADFVDASFFKEIEKSGLLEQLYRK*
Ga0132256_10096680333300015372Arabidopsis RhizosphereLERETDPKTKNFGPADFVDASFFKEIEKSGMLEQLYRK*
Ga0132255_10499726713300015374Arabidopsis RhizosphereKALQAVLERETDPKTKNFGPADFVDASFFKEIEKSGMLEQLYRK*
Ga0184605_1048992013300018027Groundwater SedimentRENDPKLKTLSPADFIDASFFREIEKTGLIEQLYRK
Ga0184639_1008532043300018082Groundwater SedimentNEKALQAVLDRETDAKLKSMSPADFVDASFFKEIERSGLIEQLYRK
Ga0184639_1012508913300018082Groundwater SedimentEQIDLMEVLPAPNDKALQAVLDRETDPKVKSLSTADFVDASFFREIEKSGMIEQQYRR
Ga0184628_1003686313300018083Groundwater SedimentRENDAKLKTMSPADFIDASFFREIEKSGLIEQLYRK
Ga0190265_1364253523300018422SoilETLPAPNDKALQAVLERESDSKVKSSPVADYVDASFFKEIERSGLIEKLYRN
Ga0190268_1093588013300018466SoilAVLERESDPKVKSLAIGDFIGASFFREIEKSGLIEQLYRK
Ga0190268_1197128923300018466SoilLPAPNDRALQAVLDREADPKAKNAAAADFVDASFFREIEKSGLIEKLYRK
Ga0190270_1054248113300018469SoilEQVEFLERIPGPNEKALAAVLERESDPKAKSLAIGDFIDASFFREIEKTGLIEHLYRK
Ga0190271_1206787413300018481SoilLPAPNEKALAAVLERESDPKVKSLAIGDFIDASFFREIEKTGLIEHLYRK
Ga0193739_112452613300020003SoilDRESDPKLKSSSPADFVDASFFRDIEKSGTIEQLYRK
Ga0210382_1018404633300021080Groundwater SedimentALQAVLERENDPKLKVSSPADFVDASFYREIEKSGMIEQLYRR
Ga0193719_1003646653300021344SoilPAPNDKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK
Ga0193709_107385813300021411SoilPNEKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK
Ga0212128_1051600433300022563Thermal SpringsEKALRAVLDRESDPKVKSLAVGDFVEASFFRDIEKSGMIQQLYRR
Ga0210113_102148113300025796Natural And Restored WetlandsPAANDKAIRAVLERESDPKVKSSPVAEYVDASFFRDIEKSGLVEKLYHK
Ga0207642_1077235313300025899Miscanthus RhizosphereEVLPAPNEKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK
Ga0207699_1091081113300025906Corn, Switchgrass And Miscanthus RhizosphereQADLLERSPAPNERALQAVLERETDPKTKNFGPADFVDASFFKEIEKSGMLEQLYRK
Ga0207684_1081642913300025910Corn, Switchgrass And Miscanthus RhizosphereLDRESDPKAKSSKPADFVDVSFLKDIEKSGMIDQLYRK
Ga0207663_1072839313300025916Corn, Switchgrass And Miscanthus RhizosphereAPNERALQAVLERETDPKTKNFGPADFVDASFFKEIEKSGMLEQLYRK
Ga0210116_101090113300025959Natural And Restored WetlandsDRENDPKLKTMSIADFVDASFFREIERSGLIEQLYRK
Ga0207676_1232448713300026095Switchgrass RhizosphereRESDPKAKSAPLAEFVDASFFREIAKSGMMEQLYRK
Ga0207675_10205268223300026118Switchgrass RhizosphereMEVLPAPNDKALQAVLERETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK
Ga0209056_1055234923300026538SoilLLDRESDPKAKSSKPADFIDVSFLKEIEKSGLINQLYRK
Ga0209971_101899233300027682Arabidopsis Thaliana RhizosphereVLERESDPKMKNSPVADYVDATFFREIEKSGLVEKLYRK
Ga0209819_1000598713300027722Freshwater SedimentPNDKALQAVLERETDPKTKNFAPADFVDASFFREIEKSGLIEQLYRK
Ga0209073_1023042723300027765Agricultural SoilALQAVLERETDPKTKNFGPADFVDASFFKEIEKSGMIEQLYGK
Ga0209464_1013618613300027778Wetland SedimentPAPNDKALQAVLDRENDAKLKTMLPADFVDASFFRDIEKSGLIEQLYRK
Ga0207428_1056706413300027907Populus RhizosphereNDKALQAVLERETDPKTKNFAPADFVDASFFREIEKSGLIEQLYRK
Ga0209382_1111705913300027909Populus RhizosphereLPAPNDKALQAVLERETDPKTKHFAPADFVDASFFREIEKSGLIEQLYRK
Ga0210366_1049769223300028420EstuarineLSLPGTNCFPLMEVLPAPNDKTLQAVLDCETDPKLKSFSPADFIDANFFRDIERIGAKEQLY
Ga0307499_1013017113300031184SoilAPNDKALQAVLDRETDPKVKSFSTADFIDASFFKEIEKSGMIEQLYRK
Ga0299913_1107801413300031229SoilLQAVLDRESDPKVKSSSVADYVDSSFFREIEKSGLIEKLYRK
Ga0306917_1103413913300031719SoilALQAVLERETDPKVKSFAFGDFVDASFFKEIEKSGMIEQLYRK
Ga0310904_1133032813300031854SoilDLLERLPAPNDKALQAVLERETDPKVKNFAPADFVDASFFREIEKSGLIEQLYRK
Ga0307411_1090607323300032005RhizosphereEQVELLERLPGPNDRALQAVLDRENDPKLKVMSPADFTDASFFRDIERSGLIEQLYRK
Ga0315910_1030784733300032144SoilVLEREADPKLKSSAPAEYVDASFFREIEKGGLIEKLYRK
Ga0316628_10106687733300033513SoilKALRAVLDRETDPKVKSFSTANFVDASFFREIENSGMIEELYRKQ
Ga0364945_0020147_2_1153300034115SedimentERETDPKTKNFAPVDFVDASFFREIEKSGLIEQLYRK
Ga0364933_036433_2_1453300034150SedimentPNDKALQAVLERETDPKVKNFAPADFVDASFFREIEKSGLIEQLYRK
Ga0364933_037175_1076_11923300034150SedimentLGRENDAKLKTMAPADFIDASFFRDIEKSGLIEQLYRK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.