Metagenome / Metatranscriptome Family F064071

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064071
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	66 residues
Representative Sequence	MRYLGPLALLFVLSASLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR
Number of Associated Samples	115
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.95 %
% of genes near scaffold ends (potentially truncated)	27.91 %
% of genes from short scaffolds (< 2000 bps)	75.97 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.450 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (10.853 % of family members)
Environment Ontology (ENVO)	Unclassified (29.457 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.488 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.75% β-sheet: 34.38% Coil/Unstructured: 46.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00381	PTS-HPr	14.73
PF00857	Isochorismatase	13.95
PF03668	ATP_bind_2	5.43
PF03401	TctC	3.10
PF02518	HATPase_c	1.55
PF07690	MFS_1	1.55
PF00211	Guanylate_cyc	1.55
PF00359	PTS_EIIA_2	1.55
PF12832	MFS_1_like	1.55
PF00072	Response_reg	1.55
PF07394	DUF1501	0.78
PF04963	Sigma54_CBD	0.78
PF13231	PMT_2	0.78
PF11396	PepSY_like	0.78
PF00210	Ferritin	0.78
PF00296	Bac_luciferase	0.78
PF01590	GAF	0.78
PF00005	ABC_tran	0.78
PF02954	HTH_8	0.78
PF14518	Haem_oxygenas_2	0.78
PF13565	HTH_32	0.78
PF00011	HSP20	0.78
PF02852	Pyr_redox_dim	0.78
PF13432	TPR_16	0.78
PF02627	CMD	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG1925	HPr or related phosphotransfer protein	Signal transduction mechanisms [T]	14.73
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	13.95
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	13.95
COG1660	RNase adaptor protein RapZ for GlmZ sRNA degradation, contains a P-loop ATPase domain	Signal transduction mechanisms [T]	5.43
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.10
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.55
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.78
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.78
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.78
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.45 %
Unclassified	root	N/A	1.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.45 %
Unclassified	root	N/A	1.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.45 %
Unclassified	root	N/A	1.55 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.95 %
Unclassified	root	N/A	1.55 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	68.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.33 %
Unclassified	root	N/A	1.55 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	68.99 %
Unclassified	root	N/A	1.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	65.12 %
Unclassified	root	N/A	1.55 %
Stellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Stellaceae	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	65.12 %
Unclassified	root	N/A	1.55 %
Stella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Stellaceae → Stella	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	65.12 %
Unclassified	root	N/A	1.55 %
Stella humosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Stellaceae → Stella → Stella humosa	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_2165835	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1114	Open in IMG/M
2209111006\|2214789665	All Organisms → cellular organisms → Bacteria → Proteobacteria	2247	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1754397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	665	Open in IMG/M
3300000559\|F14TC_100222041	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3509	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1033783	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300001139\|JGI10220J13317_10866495	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	654	Open in IMG/M
3300002899\|JGIcombinedJ43975_10051136	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300003319\|soilL2_10268925	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1132	Open in IMG/M
3300004013\|Ga0055465_10160392	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718	Open in IMG/M
3300004156\|Ga0062589_101606238	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	644	Open in IMG/M
3300004463\|Ga0063356_100428287	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300004463\|Ga0063356_102266764	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	828	Open in IMG/M
3300004479\|Ga0062595_100611243	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	852	Open in IMG/M
3300004480\|Ga0062592_100009128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3851	Open in IMG/M
3300005171\|Ga0066677_10410957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	773	Open in IMG/M
3300005186\|Ga0066676_10061195	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2178	Open in IMG/M
3300005187\|Ga0066675_11044404	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	612	Open in IMG/M
3300005277\|Ga0065716_1004164	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1053	Open in IMG/M
3300005288\|Ga0065714_10099050	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1695	Open in IMG/M
3300005290\|Ga0065712_10339747	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	792	Open in IMG/M
3300005293\|Ga0065715_10016184	All Organisms → cellular organisms → Bacteria	2135	Open in IMG/M
3300005293\|Ga0065715_10836798	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	585	Open in IMG/M
3300005294\|Ga0065705_10013550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4127	Open in IMG/M
3300005294\|Ga0065705_10223966	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300005294\|Ga0065705_10552604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	734	Open in IMG/M
3300005327\|Ga0070658_10516182	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300005338\|Ga0068868_101266150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	684	Open in IMG/M
3300005339\|Ga0070660_100948320	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300005344\|Ga0070661_101098500	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300005366\|Ga0070659_101273633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	651	Open in IMG/M
3300005438\|Ga0070701_11106523	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	558	Open in IMG/M
3300005439\|Ga0070711_100080513	All Organisms → cellular organisms → Bacteria → Proteobacteria	2319	Open in IMG/M
3300005446\|Ga0066686_10213438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1296	Open in IMG/M
3300005471\|Ga0070698_100837854	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	864	Open in IMG/M
3300005530\|Ga0070679_100207717	All Organisms → cellular organisms → Bacteria → Proteobacteria	1922	Open in IMG/M
3300005539\|Ga0068853_100278917	All Organisms → cellular organisms → Bacteria → Proteobacteria	1540	Open in IMG/M
3300005544\|Ga0070686_100640196	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	842	Open in IMG/M
3300005616\|Ga0068852_100396894	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1356	Open in IMG/M
3300005764\|Ga0066903_100117461	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3680	Open in IMG/M
3300006046\|Ga0066652_100575860	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300006049\|Ga0075417_10070158	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300006049\|Ga0075417_10694104	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	522	Open in IMG/M
3300006169\|Ga0082029_1309961	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300006755\|Ga0079222_10038436	All Organisms → cellular organisms → Bacteria → Proteobacteria	2121	Open in IMG/M
3300006755\|Ga0079222_10346250	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1001	Open in IMG/M
3300006804\|Ga0079221_10050864	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300006804\|Ga0079221_10202803	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1088	Open in IMG/M
3300006844\|Ga0075428_101226822	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	790	Open in IMG/M
3300006852\|Ga0075433_10018370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5811	Open in IMG/M
3300006852\|Ga0075433_10045001	All Organisms → cellular organisms → Bacteria → Proteobacteria	3836	Open in IMG/M
3300006852\|Ga0075433_10273901	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1496	Open in IMG/M
3300006865\|Ga0073934_10380504	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	874	Open in IMG/M
3300006871\|Ga0075434_100260122	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300006871\|Ga0075434_102446438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300006876\|Ga0079217_10058439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1581	Open in IMG/M
3300006903\|Ga0075426_10064499	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2618	Open in IMG/M
3300006918\|Ga0079216_10004132	All Organisms → cellular organisms → Bacteria → Proteobacteria	4355	Open in IMG/M
3300007004\|Ga0079218_12173283	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	643	Open in IMG/M
3300009092\|Ga0105250_10187622	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300009094\|Ga0111539_10945527	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300009147\|Ga0114129_10252911	Not Available	2364	Open in IMG/M
3300009157\|Ga0105092_10494476	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	701	Open in IMG/M
3300009176\|Ga0105242_10063607	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3039	Open in IMG/M
3300010145\|Ga0126321_1383966	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	706	Open in IMG/M
3300010373\|Ga0134128_10904690	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	977	Open in IMG/M
3300010376\|Ga0126381_100044132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5421	Open in IMG/M
3300010396\|Ga0134126_10423953	All Organisms → cellular organisms → Bacteria	1543	Open in IMG/M
3300010396\|Ga0134126_11371753	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	782	Open in IMG/M
3300010399\|Ga0134127_10092974	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2621	Open in IMG/M
3300012202\|Ga0137363_11281144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300012203\|Ga0137399_10741607	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	827	Open in IMG/M
3300012205\|Ga0137362_10351209	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1277	Open in IMG/M
3300012210\|Ga0137378_10446361	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1198	Open in IMG/M
3300012285\|Ga0137370_10397192	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	835	Open in IMG/M
3300012353\|Ga0137367_10132255	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1827	Open in IMG/M
3300012355\|Ga0137369_10911107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	590	Open in IMG/M
3300012476\|Ga0157344_1024328	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	544	Open in IMG/M
3300012489\|Ga0157349_1020649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	619	Open in IMG/M
3300012497\|Ga0157319_1045317	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300012500\|Ga0157314_1023150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	649	Open in IMG/M
3300012908\|Ga0157286_10271168	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608	Open in IMG/M
3300012922\|Ga0137394_10087096	All Organisms → cellular organisms → Bacteria → Proteobacteria	2617	Open in IMG/M
3300012984\|Ga0164309_10126500	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1662	Open in IMG/M
3300013100\|Ga0157373_11193457	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	573	Open in IMG/M
3300013297\|Ga0157378_10365536	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1413	Open in IMG/M
3300014311\|Ga0075322_1005143	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300014969\|Ga0157376_10006569	All Organisms → cellular organisms → Bacteria → Proteobacteria	8230	Open in IMG/M
3300015200\|Ga0173480_10856495	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300015371\|Ga0132258_11592260	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1649	Open in IMG/M
3300015373\|Ga0132257_100655891	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300015373\|Ga0132257_101849271	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	776	Open in IMG/M
3300016371\|Ga0182034_10023825	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3710	Open in IMG/M
3300017997\|Ga0184610_1063322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1117	Open in IMG/M
3300018052\|Ga0184638_1016041	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300018053\|Ga0184626_10008773	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3928	Open in IMG/M
3300018054\|Ga0184621_10082221	Not Available	1121	Open in IMG/M
3300018056\|Ga0184623_10040606	All Organisms → cellular organisms → Bacteria	2112	Open in IMG/M
3300018075\|Ga0184632_10031081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2281	Open in IMG/M
3300018422\|Ga0190265_10336370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1592	Open in IMG/M
3300018422\|Ga0190265_10758675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1092	Open in IMG/M
3300018482\|Ga0066669_11553608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300019233\|Ga0184645_1017811	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300019356\|Ga0173481_10603417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	578	Open in IMG/M
3300019377\|Ga0190264_10856834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	702	Open in IMG/M
3300019879\|Ga0193723_1129211	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	695	Open in IMG/M
3300020018\|Ga0193721_1056415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Stellaceae → Stella → Stella humosa	1030	Open in IMG/M
3300021560\|Ga0126371_10428764	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300025310\|Ga0209172_10244679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	919	Open in IMG/M
3300025315\|Ga0207697_10009988	All Organisms → cellular organisms → Bacteria → Proteobacteria	4077	Open in IMG/M
3300025909\|Ga0207705_10362573	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300025917\|Ga0207660_11249317	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	604	Open in IMG/M
3300025920\|Ga0207649_10134623	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300025932\|Ga0207690_10376873	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300025933\|Ga0207706_10656363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	898	Open in IMG/M
3300026041\|Ga0207639_11551991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300026116\|Ga0207674_10357771	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1411	Open in IMG/M
3300026285\|Ga0209438_1020152	All Organisms → cellular organisms → Bacteria → Proteobacteria	2229	Open in IMG/M
3300026537\|Ga0209157_1305427	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	582	Open in IMG/M
3300027691\|Ga0209485_1043246	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1133	Open in IMG/M
3300027765\|Ga0209073_10013918	All Organisms → cellular organisms → Bacteria → Proteobacteria	2249	Open in IMG/M
3300027873\|Ga0209814_10016506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2961	Open in IMG/M
3300027873\|Ga0209814_10527401	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300027886\|Ga0209486_10105998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1499	Open in IMG/M
3300027909\|Ga0209382_10127420	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2964	Open in IMG/M
3300030006\|Ga0299907_10275424	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300031720\|Ga0307469_12128835	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	546	Open in IMG/M
3300031744\|Ga0306918_10545764	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	908	Open in IMG/M
3300032421\|Ga0310812_10115922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1115	Open in IMG/M
3300033412\|Ga0310810_10204513	All Organisms → cellular organisms → Bacteria → Proteobacteria	2227	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.57%
Host-Associated	Host-Associated	36.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.26%
Plants	Host-Associated → Plants	36.43%
Aquatic	Environmental → Aquatic	9.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.50%
Sediment	Environmental → Aquatic → Sediment	4.65%
Freshwater	Environmental → Aquatic → Freshwater	2.33%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.55%
Marine	Environmental → Aquatic → Marine	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.53%
Loam	Environmental → Terrestrial → Soil → Loam	7.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.55%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.55%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.33%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.33%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.20%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.43%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.10%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	3.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.10%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.33%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.33%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.55%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.55%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.78%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.78%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0770.00001420	2162886006	Switchgrass Rhizosphere	MRYIGSVAFFAIFSALAGCTAQPDRILYQRHAGHNYCHTKVETYGDPYMPTEREVVDYYGPCDAFD
2213815300	2209111006	Arabidopsis Rhizosphere	MRYVPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR
ICChiseqgaiiDRAFT_17543971	3300000033	Soil	MRYSGPLALLIVLSASFIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
F14TC_1002220412	3300000559	Soil	MKLTLALLILLFASLMGCTAMPDRVLYREYAGYGNCHMKIETAGDPFMPTEREVVDYYGPCDARP*
KanNP_Total_noBrdU_T14TCDRAFT_10337832	3300000596	Soil	MKHIGSMASLIILCASLAGCIAASDRVLYRRYAGYNYCHMKVETAGDPIVPTEREVIDFYGPCDAYD*
JGI10220J13317_108664952	3300001139	Soil	MRHILSVALFFIFCASLAGCTAQRDRIIYQRHAGYNYCHTKVETYGDPLMPTEREIVDY
JGIcombinedJ43975_100511362	3300002899	Soil	MRYFGPLALLFVLSVSFVGCTATRDRVVYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
soilL2_102689252	3300003319	Sugarcane Root And Bulk Soil	MRHISSLALSCILLAFLAGCTAQRDRIIYQRHAGYNYCHTKVETSGDPLMPTEREVVDYYGPCDAFD*
Ga0055465_101603921	3300004013	Natural And Restored Wetlands	MKYVSSVGLFLVLCASVAGCTTERDRIIYQRHAGYNYCHTKVETAGNPLMPNERDILDYYGPCDAFD*
Ga0062589_1016062382	3300004156	Soil	LSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0063356_1004282871	3300004463	Arabidopsis Thaliana Rhizosphere	RYIGSVACLVILCAALAGCTAQRDRIVYQRNAGHNYCHTKVETYGDPFMPTEREIVDYYGPCDAFD*
Ga0063356_1022667642	3300004463	Arabidopsis Thaliana Rhizosphere	MKYVSSVALFLVLCASVAGCTTERDRIIYQRHAGYNYCHTKVETAGNPLMPNERDILDYYGPCDAFD*
Ga0062595_1006112432	3300004479	Soil	MRYFGPLALLFVLSVSFVGCTATHDRVVYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0062592_1000091286	3300004480	Soil	MRHILSVALFFIFCASLAGCTAQRDRIIYQRHAGYNYCHTKVETYGDPLMPTEREIVDYYGPCDAFD*
Ga0066677_104109571	3300005171	Soil	MRHISSVALFSILFASLAGCTAQRDRILYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDAFD*
Ga0066676_100611955	3300005186	Soil	MKHIGLMASLIILGASLAGCTAAPDRVLYRRYAGNNYCHMKVETAGDPIMPTEREVIDFYGPCDAYD*
Ga0066675_110444041	3300005187	Soil	MRHILSVALFSILFASLAGCTAQRDRILYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDAFD*
Ga0065716_10041641	3300005277	Arabidopsis Rhizosphere	MRYVPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0065714_100990502	3300005288	Miscanthus Rhizosphere	MRYIPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0065712_103397471	3300005290	Miscanthus Rhizosphere	MRYSGPLVLLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0065715_100161843	3300005293	Miscanthus Rhizosphere	MRYSGPLALLIVLSASFIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDY
Ga0065715_108367981	3300005293	Miscanthus Rhizosphere	MRYSGPLALLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDV
Ga0065705_100135504	3300005294	Switchgrass Rhizosphere	MRYIGSVAFFAIFSALAGCTAQPDRILYQRHAGHNYCHTKVETYGDPYMPTEREVVDYYGPCDAFD*
Ga0065705_102239661	3300005294	Switchgrass Rhizosphere	MKYLAPLALLFVLSASLVGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDQ*
Ga0065705_105526041	3300005294	Switchgrass Rhizosphere	MRYSGPLALLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0070658_105161821	3300005327	Corn Rhizosphere	MRYSGPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0068868_1012661501	3300005338	Miscanthus Rhizosphere	TYIQKAGRRFTMRYSGPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0070660_1009483201	3300005339	Corn Rhizosphere	MRYIPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCD
Ga0070661_1010985002	3300005344	Corn Rhizosphere	MKYLAPLALLFVLSASLVGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0070659_1012736331	3300005366	Corn Rhizosphere	MRYSRPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0070701_111065231	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDA
Ga0070711_1000805133	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0066686_102134382	3300005446	Soil	MKHIGLMASLIILGASLAGCTAAPDRVLYRRYAGNNYCHMKVETAGDPIMPTEREVIDFYGPCDAFD*
Ga0070698_1008378542	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKHIGLMASLIILCASLAGCTAAPDRVLYRRYAGNNYCHMKVETAGDPIMPTEREVIDFYGPCDAYD*
Ga0070679_1002077171	3300005530	Corn Rhizosphere	MRYSGPLAFLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0068853_1002789173	3300005539	Corn Rhizosphere	IVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0070686_1006401962	3300005544	Switchgrass Rhizosphere	MRYVPLTLLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0068852_1003968943	3300005616	Corn Rhizosphere	MRYSGPLALLIVLSASLIGCTATHDRVIYQSYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0066903_1001174614	3300005764	Tropical Forest Soil	MRYTLVLLFVLSIYGDPDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0066652_1005758603	3300006046	Soil	MRHVLSVALFSILFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDKFD*
Ga0075417_100701583	3300006049	Populus Rhizosphere	MRHILSVALFSILFASLAGCTAQRDRILYQRHAGYNYCHTKVETSGDPLTPTEREVVDYYGPCDAFD*
Ga0075417_106941041	3300006049	Populus Rhizosphere	MKHIGLMASLIILCASFAGCIAASDRVLYRRYAGYNYCHMKVETAGDPIVPTEREVIDFYGPCDAYD*
Ga0082029_13099612	3300006169	Termite Nest	MRYVGTVALLWILVSSLAACTARQDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDK*
Ga0079222_100384363	3300006755	Agricultural Soil	MRYLGPLALLFALSASLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0079222_103462502	3300006755	Agricultural Soil	MRYIGTVALLWILTSSLAACTTTHDRVISQRYAGHNYCNTKVETAGDPLMPTERDVVDYYGPCDAFDK*
Ga0079221_100508642	3300006804	Agricultural Soil	MRYSGPFALLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0079221_102028032	3300006804	Agricultural Soil	MRYLGPLALLFVLSASLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0075428_1012268221	3300006844	Populus Rhizosphere	INGVADHLCASFAGCIAASDRVLYRRYAGYNYCHMKVETAGDPIVPTEREVIDFYGPCDAYD*
Ga0075433_100183705	3300006852	Populus Rhizosphere	MKHIGLMASLIILCALLAGCTAASDRVLYRRYAGYNYCHMKVETAGDPIMPTEREVIDFYGPCDAYD*
Ga0075433_100450013	3300006852	Populus Rhizosphere	MRHVGPLALLFVYPLRSLDAPRLIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0075433_102739012	3300006852	Populus Rhizosphere	MRYSGPLALLTVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0073934_103805041	3300006865	Hot Spring Sediment	MKYAGSLAGLIALLGSLIGCTVDRDRVLYRRYAGYNYCHMKVETTADPARPGERDIIDFYGPCDAYD*
Ga0075434_1002601223	3300006871	Populus Rhizosphere	MRYVPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDQ*
Ga0075434_1024464381	3300006871	Populus Rhizosphere	MRHVLSVALFSILFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPC
Ga0079217_100584392	3300006876	Agricultural Soil	MRHILSLALFSFFCASFTGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREIVDYYGPCDAFD*
Ga0075426_100644991	3300006903	Populus Rhizosphere	MRPILSVALFSILFASFAGCTAQRDRIVYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDEF
Ga0079216_100041322	3300006918	Agricultural Soil	MRHILSLALFSFFCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREIVDYYGPCDAFD*
Ga0079218_121732832	3300007004	Agricultural Soil	MKPKGSLVLLTILFAGLVGCTSAPDRIIYKEYAGYNYCHMKVETAGDPTMPTEREVIDFYGPCDAYR*
Ga0105250_101876221	3300009092	Switchgrass Rhizosphere	MRYSGPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPC
Ga0111539_109455271	3300009094	Populus Rhizosphere	ATYIQKAGRRFTMRYSRPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0114129_102529112	3300009147	Populus Rhizosphere	MFDPGKEIFTMRHILSVALFSILFASLAGCTAQRDRILYQRHAGYNYCHTKVETSGDPLTPTEREVVDYYGPCDAFD*
Ga0105092_104944761	3300009157	Freshwater Sediment	MRHILSLAMFSVFYASLAGCTAQPDRIIYQRHAGYNYCHTKVETYGDPLMPTEREIVDYYGPCDAFDRR*
Ga0105242_100636073	3300009176	Miscanthus Rhizosphere	MRYSGPLTLLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0126321_13839662	3300010145	Soil	HGGEFTMRYSGPLALLVVLSAWLVGCTATHDRVIYQRYAGHNYCNTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0134128_109046902	3300010373	Terrestrial Soil	MRYSGPLVLLIVLSASLIGCTATHDRVIYQSYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0126381_1000441321	3300010376	Tropical Forest Soil	RLLFVLSIYGDPDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0134126_104239531	3300010396	Terrestrial Soil	MRYSGPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFER*
Ga0134126_113717532	3300010396	Terrestrial Soil	MRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGYNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0134127_100929744	3300010399	Terrestrial Soil	LVILCAALAGCTAQRDRIVYQRNAGHNYCHTKVETYGDPFMPTEREIVDYYGPCDAFD*
Ga0137363_112811441	3300012202	Vadose Zone Soil	ALFSILFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDKFD
Ga0137399_107416072	3300012203	Vadose Zone Soil	MRHVLSVALFSILFASLAGCTAQRDRIIYQRHAGHNYCITKVETYGDPLMPTEREVVDYYGPCDKFD*
Ga0137362_103512091	3300012205	Vadose Zone Soil	MRPILSVALFAILFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDKFD*
Ga0137378_104463614	3300012210	Vadose Zone Soil	IAPRKGDSNMKHIGLMASLIILCASLAGCIAASDRVLYRRYAGYNYCHMKVETAGDPIVPTEREVIDFYGPCDAYD*
Ga0137370_103971921	3300012285	Vadose Zone Soil	MRHILSVAVFSILFASLAGCTAQRDRILYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDAFD*
Ga0137367_101322552	3300012353	Vadose Zone Soil	MKHIGLMASLIILCASLVGCTAASDRVLYRRYAGYNYCHMKVETAGDPIMPTEREVIDFYGPCDAYD*
Ga0137369_109111071	3300012355	Vadose Zone Soil	MKHIGLMVSLIILCASLAGCTAAPDRVLYRRYAGYNYCHMKVETAGDPIMPTEREVIDFYGPCDAYD*
Ga0157344_10243282	3300012476	Arabidopsis Rhizosphere	MRHVGPLALLFVLSASLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFNR*
Ga0157349_10206491	3300012489	Unplanted Soil	MRYIPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDQ*
Ga0157319_10453171	3300012497	Arabidopsis Rhizosphere	MRYVPLALLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0157314_10231501	3300012500	Arabidopsis Rhizosphere	NPTMRYIPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0157286_102711681	3300012908	Soil	MRYSGPLALLIVLSASFIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFNR*
Ga0137394_100870962	3300012922	Vadose Zone Soil	MRHILSVALFSILFASLAGCTAQRDRILYQRHAGYNYCHTKVETSGDPLVPTEREVVDYYGPCDAFD*
Ga0164309_101265004	3300012984	Soil	TMRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR*
Ga0157373_111934571	3300013100	Corn Rhizosphere	MRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYY
Ga0157378_103655362	3300013297	Miscanthus Rhizosphere	MRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVDTAGDPLMPTERDVVDYYGPCDAFDR*
Ga0075322_10051431	3300014311	Natural And Restored Wetlands	SVALFLVLCASLAGCAAQRDHIIYQRHAGYNYCHTKVETAGNPLMPNERDIVDYYGPCDAFD*
Ga0157376_100065696	3300014969	Miscanthus Rhizosphere	MRYSGPLALLIVLTASLIGCTATHDRIIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0173480_108564952	3300015200	Soil	VLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR*
Ga0132258_115922603	3300015371	Arabidopsis Rhizosphere	MKYLAPLALLFVLSASLVGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPC
Ga0132257_1006558911	3300015373	Arabidopsis Rhizosphere	MKYLAPLALLFVLSASLVGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDV
Ga0132257_1018492712	3300015373	Arabidopsis Rhizosphere	MRYIGSVAFFAIFSALAGCTAQPDRILYQRHAGHNYCHTKVETYGNPYMPTEREVVDYYGPCDAFD*
Ga0182034_100238254	3300016371	Soil	MRYIGSLALLFVLSTSLIACTATHDRVIYQRYAGDNYCHTKVETSDDPLMPTERDVVDYYGPCDALDR
Ga0184610_10633222	3300017997	Groundwater Sediment	MRPILSVALFAVLCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREVVDYYGPCDAFD
Ga0184638_10160413	3300018052	Groundwater Sediment	MRPILSVALFSVLCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREVVDYYGPCDAFD
Ga0184626_100087733	3300018053	Groundwater Sediment	MKLTKAIVPLTILFASLVGCTARPDRVLFREYAGYGYCHMKVETAGDPLMPTEREVVDFYGPCDARP
Ga0184621_100822213	3300018054	Groundwater Sediment	MRPILSVALFAVLCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREVVDYYGPCDAF
Ga0184623_100406063	3300018056	Groundwater Sediment	MKLTKAIVPLTILFASLVGCTARPDRVLFREYAGYGYCHMKVETAGDQLMPTEREVVDFYGPCDARP
Ga0184632_100310811	3300018075	Groundwater Sediment	MKVTKVIGPLAILFASLVGCTARPDRVLFREYAGYGYCHMKIETAGDPLMPTEREVVDFYGSCDARP
Ga0190265_103363702	3300018422	Soil	MRHILSAALFSILCASLAGCTAGGNRIIYQRHAGYNYCHTKVEIPGDPLRPTEREVVDYYGPCDAFD
Ga0190265_107586752	3300018422	Soil	MRHIFSVALFSILCASFVGCTAQRDRIIYQRHAGYNYCHTKVETAGDPLMPTEREVVDYYGPCDAFD
Ga0066669_115536082	3300018482	Grasslands Soil	MRHILSVALFSILFASLAGCTAQRDRILYQRHAGYNYCNTKVETYGDPLMPTEREVVDYYGPCDAFD
Ga0184645_10178111	3300019233	Groundwater Sediment	LTMRPILSVALFAVLCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREVVDYYGPCDAFD
Ga0173481_106034171	3300019356	Soil	MRYSGPLALLIVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR
Ga0190264_108568341	3300019377	Soil	MRHLWSLAVFSILLGSLAGCTAQRDRIIYQRQAGYNYCHTKVETSAVDPYNPTEREIVDYYGRCDAFD
Ga0193723_11292111	3300019879	Soil	MRHVLSVALFSILFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDKFD
Ga0193721_10564151	3300020018	Soil	QQTLDPGKEILTMRHVLSVALFSILFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDKFD
Ga0126371_104287642	3300021560	Tropical Forest Soil	MRYTLVLLFVLSIYGDPDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFD
Ga0209172_102446791	3300025310	Hot Spring Sediment	MKYAGSLAGLIALLGSLIGCTVDRDRVLYRRYAGYNYCHMKVETTADPARPGERDIIDFYGPCDAYD
Ga0207697_100099884	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRYSGPLALLTVLSASLIGCTATHDRVIYQSYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR
Ga0207705_103625733	3300025909	Corn Rhizosphere	LSASFIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR
Ga0207660_112493171	3300025917	Corn Rhizosphere	MRYIGSVACLVILCAALAGCTAQRDRIVYQRNAGHNYCHTKVETYGDPFMPTEREIVDYYGPCDAFD
Ga0207649_101346233	3300025920	Corn Rhizosphere	MRYSGPLALLIVLSASFIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVD
Ga0207690_103768732	3300025932	Corn Rhizosphere	MRYIPLALLFVLSSSLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFD
Ga0207706_106563634	3300025933	Corn Rhizosphere	MRYFGPLALLFVLSASLIGCTATHDRVISQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR
Ga0207639_115519911	3300026041	Corn Rhizosphere	IVLSASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR
Ga0207674_103577712	3300026116	Corn Rhizosphere	MRYVPLTLLFVLSSLLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDQ
Ga0209438_10201521	3300026285	Grasslands Soil	FSILFASLAGCTAQRDRILYQRHAGYNYCHTKVETSGDPLVPTEREVVDYYGPCDAFD
Ga0209157_13054271	3300026537	Soil	MKHIGLMASLIILGASLAGCTAAPDRVLYRRYAGNNYCHMKVETAGDPIMPTEREVIDFYGPCDAFD
Ga0209485_10432461	3300027691	Agricultural Soil	MRHILSLALFSFFCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREIVDYYGPCDAFD
Ga0209073_100139183	3300027765	Agricultural Soil	MRYLGPLALLFALSASLVGCTAAHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDR
Ga0209814_100165065	3300027873	Populus Rhizosphere	MKHIGLMASLIILCASFAGCIAASDRVLYRRYAGYNYCHMKVETAGDPIVPTEREVIDFYGPCDAYD
Ga0209814_105274011	3300027873	Populus Rhizosphere	HILSVALFSILFASLAGCTAQRDRILYQRHAGYNYCHTKVETSGDPLTPTEREVVDYYGPCDAFD
Ga0209486_101059982	3300027886	Agricultural Soil	MRHILSLALFSFFCASLAGCTAQRDRIIYQRYAGYNYCHTKVETYGDPLMPTEREIVDY
Ga0209382_101274204	3300027909	Populus Rhizosphere	MRHILSVALFFIFCASLAGCTAQRDRIIYQRHAGYNYCHTKVETYGDPLMPTEREIVDYYGPCDAFD
Ga0299907_102754241	3300030006	Soil	MRHILSVALFSIFCGSLAGCTAARDHRIIYQRYAGYNYCHTKVEVPSDSPRPGDREIVDYYGPCDAFD
Ga0307469_121288351	3300031720	Hardwood Forest Soil	LFASLAGCTAQRDRIIYQRHAGHNYCNTKVETYGDPLMPTEREVVDYYGPCDKFD
Ga0306918_105457642	3300031744	Soil	MRYIGSLALLFVLSTSLIACTATHDRVIYQRYAGDNYCHTKVETSDDPLMPTERDVVDYYGPCDAFDR
Ga0310812_101159223	3300032421	Soil	MRYSGPLALLIVLTASLIGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDEFDR
Ga0310810_102045132	3300033412	Soil	MKYLAPLALLFVLSASLVGCTATHDRVIYQRYAGHNYCHTKVETAGDPLMPTERDVVDYYGPCDAFDQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064071

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences