Metagenome / Metatranscriptome Family F063998

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063998
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	72 residues
Representative Sequence	MEPGEGVVLTVVSGEPEAEMVCGLLRSAGIDCAYRDTEAIDSPLEDFTASGPREILVRDADLEAA
Number of Associated Samples	106
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.69 %
% of genes near scaffold ends (potentially truncated)	39.53 %
% of genes from short scaffolds (< 2000 bps)	85.27 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.047 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.954 % of family members)
Environment Ontology (ENVO)	Unclassified (24.806 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.612 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.66% β-sheet: 19.35% Coil/Unstructured: 56.99%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF09413	DUF2007	20.16
PF00903	Glyoxalase	4.65
PF00106	adh_short	3.88
PF07676	PD40	3.88
PF00583	Acetyltransf_1	3.10
PF12903	DUF3830	3.10
PF03816	LytR_cpsA_psr	2.33
PF13462	Thioredoxin_4	2.33
PF07883	Cupin_2	2.33
PF00441	Acyl-CoA_dh_1	1.55
PF08241	Methyltransf_11	1.55
PF00248	Aldo_ket_red	1.55
PF00892	EamA	1.55
PF08327	AHSA1	1.55
PF03795	YCII	1.55
PF01909	NTP_transf_2	0.78
PF00115	COX1	0.78
PF00005	ABC_tran	0.78
PF02417	Chromate_transp	0.78
PF00484	Pro_CA	0.78
PF02230	Abhydrolase_2	0.78
PF02518	HATPase_c	0.78
PF12840	HTH_20	0.78
PF00723	Glyco_hydro_15	0.78
PF04185	Phosphoesterase	0.78
PF12867	DinB_2	0.78
PF01906	YbjQ_1	0.78
PF13185	GAF_2	0.78
PF00561	Abhydrolase_1	0.78
PF03640	Lipoprotein_15	0.78
PF01435	Peptidase_M48	0.78
PF08818	DUF1801	0.78
PF13302	Acetyltransf_3	0.78
PF04261	Dyp_perox	0.78
PF00909	Ammonium_transp	0.78
PF02845	CUE	0.78
PF06742	DUF1214	0.78
PF12680	SnoaL_2	0.78
PF13489	Methyltransf_23	0.78
PF06224	HTH_42	0.78
PF13561	adh_short_C2	0.78
PF02635	DrsE	0.78
PF12847	Methyltransf_18	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	Cell wall/membrane/envelope biogenesis [M]	2.33
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.55
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.55
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.78
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.78
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.78
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.78
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.78
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.78
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.78
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.78
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.78
COG2837	Periplasmic deferrochelatase/peroxidase EfeB	Inorganic ion transport and metabolism [P]	0.78
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.78
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.78
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.82 %
Unclassified	root	N/A	13.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.05 %
Unclassified	root	N/A	13.18 %
Viruses	superkingdom	All Organisms → Viruses	0.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.05 %
Unclassified	root	N/A	13.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.34 %
Unclassified	root	N/A	13.18 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	58.14 %
Unclassified	root	N/A	13.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	40.31 %
Unclassified	root	N/A	13.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.55 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.78 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	34.11 %
Unclassified	root	N/A	13.18 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.78 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.78 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.11 %
Unclassified	root	N/A	13.18 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.78 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.78 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.11 %
Unclassified	root	N/A	13.18 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.78 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.11 %
Unclassified	root	N/A	13.18 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.78 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.78 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.11 %
Unclassified	root	N/A	13.18 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Frankia sp. R82	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. R82	0.78 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.78 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101879153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300000956\|JGI10216J12902_101133624	All Organisms → cellular organisms → Bacteria	4665	Open in IMG/M
3300001305\|C688J14111_10259465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300001686\|C688J18823_10384974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	909	Open in IMG/M
3300002568\|C688J35102_118354930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300003990\|Ga0055455_10001082	All Organisms → cellular organisms → Bacteria	4173	Open in IMG/M
3300004081\|Ga0063454_100008728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2591	Open in IMG/M
3300004081\|Ga0063454_100290726	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1014	Open in IMG/M
3300004081\|Ga0063454_102064923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300004114\|Ga0062593_102551428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300004153\|Ga0063455_100015449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1918	Open in IMG/M
3300004153\|Ga0063455_100429649	All Organisms → cellular organisms → Bacteria → Terrabacteria group	792	Open in IMG/M
3300005093\|Ga0062594_103269851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300005332\|Ga0066388_102096915	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300005337\|Ga0070682_100541520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	909	Open in IMG/M
3300005341\|Ga0070691_10159123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1163	Open in IMG/M
3300005355\|Ga0070671_101301199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300005355\|Ga0070671_101528374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300005437\|Ga0070710_11512645	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005526\|Ga0073909_10064941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1363	Open in IMG/M
3300005526\|Ga0073909_10700833	Not Available	508	Open in IMG/M
3300005529\|Ga0070741_10594305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	989	Open in IMG/M
3300005530\|Ga0070679_100279647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1622	Open in IMG/M
3300005530\|Ga0070679_101655134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300005563\|Ga0068855_100158554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2570	Open in IMG/M
3300005566\|Ga0066693_10270772	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005576\|Ga0066708_10820513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300005578\|Ga0068854_102127347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300005591\|Ga0070761_10610726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	679	Open in IMG/M
3300005607\|Ga0070740_10392052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	540	Open in IMG/M
3300005618\|Ga0068864_100935179	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300005764\|Ga0066903_101542382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1257	Open in IMG/M
3300005764\|Ga0066903_101740008	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300005764\|Ga0066903_104341995	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005764\|Ga0066903_108192217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005896\|Ga0075282_1069461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300005898\|Ga0075276_10114027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300006031\|Ga0066651_10163454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1171	Open in IMG/M
3300006031\|Ga0066651_10354170	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300006032\|Ga0066696_10311125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1024	Open in IMG/M
3300006173\|Ga0070716_100929675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300006175\|Ga0070712_100016587	All Organisms → cellular organisms → Bacteria	4758	Open in IMG/M
3300006581\|Ga0074048_12093569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300006871\|Ga0075434_102061133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300007076\|Ga0075435_101318852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300009012\|Ga0066710_103839813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300009093\|Ga0105240_10024229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8007	Open in IMG/M
3300009137\|Ga0066709_103913372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300009162\|Ga0075423_10586061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1175	Open in IMG/M
3300009545\|Ga0105237_12311479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300010039\|Ga0126309_10591172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300010303\|Ga0134082_10424250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300010396\|Ga0134126_10710811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1141	Open in IMG/M
3300010868\|Ga0124844_1204506	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300012198\|Ga0137364_10011452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5089	Open in IMG/M
3300012198\|Ga0137364_10121540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1861	Open in IMG/M
3300012198\|Ga0137364_11407192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300012199\|Ga0137383_10494963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	895	Open in IMG/M
3300012204\|Ga0137374_10163189	All Organisms → Viruses → Predicted Viral	1970	Open in IMG/M
3300012207\|Ga0137381_11687114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300012208\|Ga0137376_10250169	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300012356\|Ga0137371_10592773	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300012469\|Ga0150984_109601545	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012469\|Ga0150984_118317140	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300012469\|Ga0150984_120774605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300012913\|Ga0157298_10173737	Not Available	667	Open in IMG/M
3300012951\|Ga0164300_10075275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1415	Open in IMG/M
3300012955\|Ga0164298_10161394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1271	Open in IMG/M
3300012960\|Ga0164301_10536039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. R82	852	Open in IMG/M
3300012971\|Ga0126369_10297865	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300012971\|Ga0126369_12339704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300012984\|Ga0164309_11230277	All Organisms → cellular organisms → Bacteria → Terrabacteria group	630	Open in IMG/M
3300012986\|Ga0164304_10120034	Not Available	1604	Open in IMG/M
3300012987\|Ga0164307_10099352	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1817	Open in IMG/M
3300012988\|Ga0164306_10720401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300013296\|Ga0157374_12469654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300014157\|Ga0134078_10217381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300014326\|Ga0157380_10480405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300015371\|Ga0132258_11407899	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300015371\|Ga0132258_13788840	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300015374\|Ga0132255_104551456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	588	Open in IMG/M
3300017947\|Ga0187785_10559423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300018061\|Ga0184619_10318566	Not Available	711	Open in IMG/M
3300018433\|Ga0066667_11149479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300018433\|Ga0066667_12090882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300018469\|Ga0190270_11557207	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300018482\|Ga0066669_10514180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300019890\|Ga0193728_1243450	All Organisms → cellular organisms → Bacteria → Terrabacteria group	725	Open in IMG/M
3300020069\|Ga0197907_10097072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
3300021078\|Ga0210381_10042896	Not Available	1327	Open in IMG/M
3300021415\|Ga0193694_1010516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1245	Open in IMG/M
3300022756\|Ga0222622_10559669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300025552\|Ga0210142_1000744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7003	Open in IMG/M
3300025914\|Ga0207671_11343379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300025919\|Ga0207657_10198990	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300025921\|Ga0207652_10051994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3515	Open in IMG/M
3300025922\|Ga0207646_11346213	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300025927\|Ga0207687_10070935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2488	Open in IMG/M
3300025941\|Ga0207711_10432277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1225	Open in IMG/M
3300025972\|Ga0207668_11363778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300026023\|Ga0207677_10163923	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300026075\|Ga0207708_11587090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300026118\|Ga0207675_101322606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300026550\|Ga0209474_10371662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	775	Open in IMG/M
3300026811\|Ga0207529_102186	Not Available	681	Open in IMG/M
3300028379\|Ga0268266_11816394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300028654\|Ga0265322_10013043	All Organisms → cellular organisms → Bacteria	2405	Open in IMG/M
3300028654\|Ga0265322_10020058	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1916	Open in IMG/M
3300028707\|Ga0307291_1024410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1389	Open in IMG/M
3300028710\|Ga0307322_10091721	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300028710\|Ga0307322_10099839	Not Available	745	Open in IMG/M
3300028720\|Ga0307317_10037140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1536	Open in IMG/M
3300028755\|Ga0307316_10136684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	869	Open in IMG/M
3300028800\|Ga0265338_10139569	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1900	Open in IMG/M
3300031092\|Ga0308204_10301829	Not Available	536	Open in IMG/M
3300031366\|Ga0307506_10310083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300031938\|Ga0308175_100346057	Not Available	1534	Open in IMG/M
3300031938\|Ga0308175_100465795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1336	Open in IMG/M
3300031996\|Ga0308176_10037887	All Organisms → cellular organisms → Bacteria	3837	Open in IMG/M
3300031996\|Ga0308176_10853995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	954	Open in IMG/M
3300032261\|Ga0306920_102871635	Not Available	654	Open in IMG/M
3300032261\|Ga0306920_104006814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.52%
Host-Associated	Host-Associated	22.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.64%
Plants	Host-Associated → Plants	22.48%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.20%
Marine	Environmental → Aquatic → Marine	1.55%
Sediment	Environmental → Aquatic → Sediment	1.55%
Freshwater	Environmental → Aquatic → Freshwater	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.16%
Loam	Environmental → Terrestrial → Soil → Loam	20.16%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.33%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.53%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.43%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.10%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.33%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.33%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.55%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.55%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005896	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204	Environmental	Open in IMG/M
3300005898	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026811	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028654	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1018791532	3300000364	Soil	VGPDEEVVVTVVAXEXEAXVXCGXLRXXGIECAYRDTEAIDSTIEDFIASGPREILVRAADLDAARDLLAQSPETK*
JGI10216J12902_1011336244	3300000956	Soil	MESDESVVVTVVSGEPEAEVVCGLLRSSGIECAYRDTEAIDSPLEDFTAAGRQEILVRPADLEAARELLAAPIGD*
C688J14111_102594652	3300001305	Soil	VEADAPVVLTVVSGESEAEVVCGLLRSAGIKCAYQDTEAIDSSLEDFMAAGSREILVGPVDLEDAKQ
C688J18823_103849742	3300001686	Soil	MEPDEVVVTVVETEPEAQIVCGLLRSSGIDCYYRDTEAIDSPLEDFTAAGAREIVVRAADAD
C688J35102_1183549302	3300002568	Soil	MPGTRSLRLVEVDDTAVAAVVSGESEAEVVCGLLRSAGIKCAYRDTDAIDSSLEDFMPAGQREVLVHPADLEA
Ga0055455_100010824	3300003990	Natural And Restored Wetlands	VKVVSGEPEAQIACGLLRANGIACGYRDTEEIDSPLEDFQAAGQREILVRPADVETAKALLEESGP*
Ga0063454_1000087282	3300004081	Soil	MEPGEAVVLTVVSSEPEAEVLCGLLQANGIDCGYRDTEAIDSPLEDFTAAGAREVLVRPSDLEAARSLLPDPD*
Ga0063454_1002907261	3300004081	Soil	MEPGEGVVLTVVSGEPEADVLCGLLRSADIDCGYRRTEAIDSPLEDFMTAGSLEILVREEDLETARQLLPDSSA*
Ga0063454_1020649231	3300004081	Soil	GVDDDAVVVKVVRDEAEAELVCGLLRANGIECAQPPTEAIDSPLEDFTAAGGQEILVHRKDLELASGLVAEDES*
Ga0062593_1025514281	3300004114	Soil	MGADESVVVTVVSGEPEADVVCGLLRSSGIDCTYRDTAAIDSPLEDFTAAGRQEILVRASDLEAARELLAAPTTD*
Ga0063455_1000154492	3300004153	Soil	MEPGEAVVLTVVSSEPEAEVLCGLLQANGIDCGYRDTEAIDSPLEDFTAAGAREVLVRPSDLEAARSLLPDPG*
Ga0063455_1004296491	3300004153	Soil	MEPGEGVVLTVVSGEPEADVVCGLLRSADIDCGYRRTEAIDSPLEDFMTAGSLEILVREEDLETARQLLPDSSA*
Ga0062595_1004305931	3300004479	Soil	PGDDQHHPNRTVGLGTSSLRVVESSDTVVLTVVSSEPEAEVVCGLLRTAGIECGHRDTEAIDSPLEDFMAAGSREILVHAVELEAAKELLAAQQG*
Ga0062594_1032698512	3300005093	Soil	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPAD
Ga0066388_1020969151	3300005332	Tropical Forest Soil	MDPDDVVVVTVVPGEEEAEVVCGLLRSAGLECAYRDTEAIDSPIEEFIASGPREILVRQSDLETARQLLDQPAG*
Ga0070682_1005415203	3300005337	Corn Rhizosphere	MESNESVVLTVVSGETEAELVCGLLRSAGFVCGYRDTQAIDSPLEDFMAAGQREVLVRPADLEAARALLEESKS*
Ga0070691_101591231	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDSGYRDTDAIDSPLEAFQSAGQREILVRPADVEMAKALLEESSPDTG*
Ga0070671_1013011992	3300005355	Switchgrass Rhizosphere	MEPNESVVLTVVSGEAEAEVVCGLLRSSGFVCAYRDTPAVDSPLEDFMTAGPREILVRPADLEAARALLEDSAP*
Ga0070671_1015283741	3300005355	Switchgrass Rhizosphere	VGADDAVVVKVVSSQSEAEVVCGLLRSAGIECAHRDTDAIDSPLEDFIAAGAQEILVHESDL
Ga0070710_115126451	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDESPARGNAVVEAEDTVVLTVVASEPEAEIACGLLRSAGIECANRDTDEIDSTVEDFIAAGPQEILV
Ga0070694_1012106061	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	CGSRARSGSRSPPPSSLCAVEADDTVVLTVVSSESEAEVVCGLLRTEGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG*
Ga0073909_100649413	3300005526	Surface Soil	GEAEAEVVCGLLRSSGFVCAYRDTPAVDSPLEDFMTAGPREILVRPADLEAARALLEDSAQ*
Ga0073909_103604612	3300005526	Surface Soil	VDDDAVVVKTVKDVTEAQIVCGLLRANGFECGFRDTEAIDSPLEDFTQAGAQEILVHAGDAEAARELLGSAVDPA*
Ga0073909_107008332	3300005526	Surface Soil	VDSDQEVAVKVVSGETEAEIACGLLRSAGIECYYRETEAIDSPLEDFIAAGQREIVVREADADAAQSS*
Ga0070741_105943052	3300005529	Surface Soil	MEPDDEAVLTVVSGEPEADVVCGLLRSAGIECASRDTEAIDSPLEDFIAAGPREILVRSADLEAAKE
Ga0070679_1002796473	3300005530	Corn Rhizosphere	VEADDTVVLTVVSSESEAEVVCGLLRTEGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG*
Ga0070679_1016551341	3300005530	Corn Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPGTG*
Ga0068855_1001585544	3300005563	Corn Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPDTG*
Ga0066693_102707722	3300005566	Soil	METDDTVVLTVVSGEPEADVVCGLLRSSGIVCGYRDTAAIDSPLEDFTAAGRQEILVRQSDLEAAKELLAAPTDE*
Ga0066708_108205132	3300005576	Soil	VEADDAVVVKVVSGESEAEVVCGLLRTAGIECAYRATEAIDSPLEDFIAAGSQEILVYPVELEAAKELLAAQQG*
Ga0068854_1021273471	3300005578	Corn Rhizosphere	MESTESVVLTVVSGEAEAEVVCGLLRSAGFVCGYRDTAGIDSPLEDFMPAGPREILVRPADLEAARALLEDSAP*
Ga0070761_106107262	3300005591	Soil	VVQADDGVVLKVVSGETEAELVCGLLRSAGFECGYRDTAADDSALEEFIASGPRDILVHERDIEAARA
Ga0070740_103920521	3300005607	Surface Soil	VEPDDEAVLTVVSGEPEADVVCGLLRSAGIECASRDTKAIDSPLEDFIASGPREILVRSADLAAAKELL
Ga0068864_1009351791	3300005618	Switchgrass Rhizosphere	VGADGAVVVKVVSSQSEAEVVCGLLRSAGIECAHRDTDAIDSPLEDFIAAGAQEILVHESDLEAA
Ga0066903_1015423825	3300005764	Tropical Forest Soil	MEPSEGVVLTVVSGAPEAEILCGLLQANGIDCAFRDTAAIDSPLEDFTAAGQQEILVRESDLEGARSLLPG*
Ga0066903_1017400083	3300005764	Tropical Forest Soil	VVKVVATEAEADIVCGLLRTAGIDCSYRDTEAIDDPLEDFTAAGPREIVVQASDADAARQVLAASTS*
Ga0066903_1043419952	3300005764	Tropical Forest Soil	VDGEEVVVLTVVSGEPEAEIVCGLLRSAGIKCGYRDTEAIDDPYEDFAASGPREIVVHAADADVARQLLAGAGD*
Ga0066903_1081922171	3300005764	Tropical Forest Soil	VGADEPVVLTVVSGESEAEVVCGLLRSAGFECAYRDTEAIDSQLEDFMPAGSREVLVHAKDLEAATE
Ga0075282_10694611	3300005896	Rice Paddy Soil	VGVEADGAVVLKVVSGESEAQIVCGLLRSSGIECGYRDTEAIDSSLEDFMAAGAQEILVPAADLE
Ga0075276_101140272	3300005898	Rice Paddy Soil	VEEDGTVVLTVVSGEPEAEVVCGLLRSAGLECGYRDTEAIDSPLEDFIAAGSQEILVQESDLAAAKELLAAT*
Ga0066651_101634542	3300006031	Soil	MEPGEEVVLTVVSGEPEAEVVCGLLRSAGIDCAYRDTEVIDSPLEDFTASGPREILVRESDL
Ga0066651_103541702	3300006031	Soil	MEPGEGVVLTVVSGDPEAEVVCGLLRSAGIDCTYRDTEAIDSPLEDFTAAGRQEILVRRSDLEAAKELLAAPTDE*
Ga0066696_103111251	3300006032	Soil	MEAGDPVVLTVVSGESEAEVVCGLLRSAGIKCAYQDTEAIDSSLEDFMAAGSREILVSATDLEDA
Ga0066652_1001452403	3300006046	Soil	RIPSEGRLPTGSLRAMEPGEAVVLTVVSSEPEAEVVCGLLQANGIDCGYRDTEAIDSPLEDFTAAGAREILVRPSDLDAARSLLPDPG*
Ga0070716_1009296752	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VDSDQEVPVKVVSGEPEAEIACGLLRSAGIECYYRETEAIDSPLEDFIAAGQREIVVREADADAAESC*
Ga0070712_1000165871	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VESEEQVVVKVVASGTEADIVCGLLRSAGIECGYRDTEAIDLSLEEFTAAGPREILVHPSDLDAAR
Ga0074048_120935692	3300006581	Soil	VDPDAVVVVTVVPSEEEAEVVCGLLRSAGLKCGYRDTEAIDSPLEDFTAAGPREILVAQSDLEVARQLLDATPQEPGGG*
Ga0066665_108780502	3300006796	Soil	MHTDLPSHPASSLCGVEAGDTVVLTVVSGGSEAEVVCGLLRSVGIDCSYRDTEAIDSPLEDFIAAGSREILVREPDLEAAKELLAAQEG*
Ga0075434_1020611332	3300006871	Populus Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEES
Ga0075435_1013188522	3300007076	Populus Rhizosphere	VESDGTVVLTVVSGEPEAEIVCGLLRSAGIECAFRDTEAIETSLEDFIAAGAQEIVVREPDLEA
Ga0066710_1038398131	3300009012	Grasslands Soil	MHTDLPSHPASSLCGVEAGDTVVLTVVSGGSEAEVVCGLLRSAGIDCSYRDTEAIDSPLEDFIAAGSREILVREPDLEAAKG
Ga0105240_100242296	3300009093	Corn Rhizosphere	VEADDMVVLTVVSSESEAEVVCGLLRTAGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG*
Ga0066709_1039133722	3300009137	Grasslands Soil	EPGDTVVLTVVSGAPEADVVCGLLRSSGIVCGYRDTAAIDSPLEDFTAAGRQEILVRQSDLEAAKELLAAPTDE*
Ga0075423_105860611	3300009162	Populus Rhizosphere	MEPGEGVVLTVVSGEPEAEIVCGLLESNGVDCTWRDTEEIDSPLEDFTAAGAQEILVRESDLEAA
Ga0105237_123114792	3300009545	Corn Rhizosphere	VEADDTVVLTVVSSESEAEVVCGLLRTAGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG*
Ga0126309_105911722	3300010039	Serpentine Soil	VEDDDRVVLKIVADEPEAELVCGLLRSEQIDCAYRRTDAIDSPLEDFTAAGRQEILVHAKDLEAARALVAEDES*
Ga0134082_104242501	3300010303	Grasslands Soil	MEPGEGVVLTVVSGEPEAEVVCGVLRSAGIDGTYRDTEAFDSPLEDFTAAGPREIPVPEADVEAARALLPGSAS*
Ga0134126_107108113	3300010396	Terrestrial Soil	VEADAVVLTVVSGASEAEVVCGLLRTAGIECAYRDTEEIDSPLEDFMAAGSQEILVYPVELEAAKELLAAQQS*
Ga0124844_12045061	3300010868	Tropical Forest Soil	VESGEQVVLTVVATEPEAEILCGLLQANGIDCSYRDTEAIDSPLEDFTAAGAREILVVRPADLEDARSLLPDSA*
Ga0137364_100114524	3300012198	Vadose Zone Soil	MDPDEGVVVTVVAGETEAELTCGLLRSAGLECAYRDTEAIDSPIEDFIAAGPREILVRESDLEVAKQLLDRPAG*
Ga0137364_101215403	3300012198	Vadose Zone Soil	METDETVVLTVVSGEPEADVVCGLLRSSGIVCGYRDTAAIDSPLEDFTAAGRQEILVRQSDLEAAKELLAAPTDE*
Ga0137364_114071921	3300012198	Vadose Zone Soil	MEPDESVVLTVVSSGPEADVVCGLLRSSGIDCAYRDTEAIDSSLEEFTADGPREILVRASDV
Ga0137383_104949632	3300012199	Vadose Zone Soil	VEADDTVVLTVVSSESEAEVVCGLLRTAGIECAYRDTEEIDSPLEDFIAAGSQEILVHAVELGAAKELLAAQQG*
Ga0137374_101631893	3300012204	Vadose Zone Soil	MELDEGVVVKVVSGEPEADIVCGLLRSAGIECAYRDTEAIDTPFEDFIADGPREILVHPSDLDAAHALLADSET*
Ga0137381_116871142	3300012207	Vadose Zone Soil	VEADTVVLTVVSSESEAEVVCGLLRTAGIECAHRDTEAIDSPLEDFIAAGEQEILVHAVELEAAKELLAAQQG*
Ga0137376_102501693	3300012208	Vadose Zone Soil	VDPGESVVVKVVSGEPEAEIVCGLLRSNGIECGYRDTEAIDSPLEDFTAAGQREILVRAADADAA
Ga0137371_105927732	3300012356	Vadose Zone Soil	MEPGAEVVLTVVSGEPEADIVCGLLRSAGIECAYRDTAAIDVPMEDFTAAGPREILVRATDLEA
Ga0150984_1096015452	3300012469	Avena Fatua Rhizosphere	FRSGVVLTVVSGEPEADVLCGLLRSADIDCGYRRTEAIDSPLEDFMTAGSLEILVREEDLETARQLLPDSSA*
Ga0150984_1183171401	3300012469	Avena Fatua Rhizosphere	VEADDSVVLKVVAGESEAEVVCGLLRTAGIDCAYRDTEAIDSPLEDFIAAGSREILVHAADLEAAKE
Ga0150984_1207746052	3300012469	Avena Fatua Rhizosphere	VSGEPEAQIVCGLLRANGIDCGYRDTDAIDSPLEDFQAAGQREILVRPADVETAKALLEDSGPDTR*
Ga0157298_101737371	3300012913	Soil	VESDETVVLTVVPGETEAELLCGLLRANGIECGYRDTDAIDSPMEDFIASGPREVLVHQGDLE
Ga0164300_100752752	3300012951	Soil	MESNESVVLTVVSGEAEAEVVCGLLRSSGFVCAYRDTPAIDSPLEDFMTAGPREILVRPADLEAARALLEDSAP*
Ga0164298_101613943	3300012955	Soil	MESNESVVLTVVSGETEAEVVCGLLRSAGFVCGYRDTQAIDSPLEDFMAAGQREVLVRPADLEAARALLEESKS*
Ga0164301_105360392	3300012960	Soil	MESNESVVLTVVSGEAEAEVVCGLLRSSGFVCAYRDTPAIDSPLEDFMTAGPREILVRPADLEAARALLEDSAQ*
Ga0126369_102978653	3300012971	Tropical Forest Soil	MEPGEGVVLTVVSAAPEAEILCGLLQANGIDCAFRDTAAIDSPLEDFTAAGQQEILVRESDLEGARSLLPS*
Ga0126369_123397041	3300012971	Tropical Forest Soil	VDDGIVVLKVVSGEPEAEVVCGLLRSAGIECGYRDTEAIDSPLEDFMAAGAQEILVRDSDLEAAKE
Ga0164309_112302772	3300012984	Soil	VVKVVPSQSEAEVVCGLLRSAGLECAHRDTDAIDSPLEDFIAAGAQEILVHESDLEVAKELLDAT*
Ga0164304_101200342	3300012986	Soil	VGTDGAVVVKVVSSQSEAEVVCGLLRSAGIECAHRDTDAIDSPREDFIAAGAQERLVHASDLEAAKELLEAT*
Ga0164307_100993521	3300012987	Soil	MDSDGAVVVKVVSGETEADIVCGLLRSAGIKCGYRDTEAIDSPLEDFTAAGQREILVHESDL
Ga0164306_107204012	3300012988	Soil	MEPNESVVLTVVSGEAEAEVVCGLLRSSGFVCAYRDTPAVDSPLEDFMTAGPREILVRPADLEAARALLEDSAQ*
Ga0157374_124696542	3300013296	Miscanthus Rhizosphere	MEPDEGVVLTVVSGETEADIVCGLLRSAGIDCAYRDTEAIDSTIEDFIAAGPREILVREADVAAA
Ga0134078_102173813	3300014157	Grasslands Soil	MDPDEGVVVTVVAGETEAELTCGLLRSAGLECAYRDTEAIDSPIEDFIAAGPREILVRESDLEVAKQLLERPAV*
Ga0157380_104804052	3300014326	Switchgrass Rhizosphere	MDDPVVVKIVDDETEAEIVCGLLRSAGLECAYRDTDAIDTPLEDFTASGRREILVHPSDLEAARGLLGEA*
Ga0132258_114078993	3300015371	Arabidopsis Rhizosphere	MASSESVVLTVVSGEAEAEVVCGLLRSAGFVCGYRDTSAIDSPLEDFMAAGQREVLVRPEDLEATRALLEDSAP*
Ga0132258_137888403	3300015371	Arabidopsis Rhizosphere	VAEDGVVVLTVVSGQSEAEVVCGLLRSAGFECAHRDTEAIDSSLEDFMAAGSQEILVREPDLEDAKQLLADSQG*
Ga0132255_1045514561	3300015374	Arabidopsis Rhizosphere	MASSESVVLTVVSGEAEAEVVCGLLRSAGFVCGYRDTSEIDSPLEDFMAAGQREILVRPEDLEAARALLEDSAP*
Ga0187785_105594232	3300017947	Tropical Peatland	VESDDTVVLTVVSGEPEADVVCGLFRSAGIECAYRDTEAIDSPLEDFISAGRQEILVRESDLEAAKEL
Ga0184619_103185662	3300018061	Groundwater Sediment	MEPDEGVVLTVVSDGPEADVVCGLLRSAGIDCTYRDTEAIDSALEDFTAAGPREILVPEADL
Ga0066667_111494791	3300018433	Grasslands Soil	MEPGEGVVLTVVSGEPEAEMVCGLLRSAGIDCAYRDTEAIDSPLEDFTASGPREILVRDADLEAA
Ga0066667_120908822	3300018433	Grasslands Soil	MEPGEAVVLTVVSSEPEAEVLCGLLQANGIDCGYRDTEAIDSPLEDFTAAGAREVLVRPSDLEAARSLLP
Ga0190270_115572072	3300018469	Soil	VYAAAMDDTVVVKVVSDEPEALVLCGLLRSAGIECGYRETDAIDSPLEDFSADGPREIHVHPSDLEGARALLADADADAER
Ga0066669_105141803	3300018482	Grasslands Soil	METDDTVVLTVVSGEPEADVVCGLLRSSGIVCGYRDTAAIDSPLEDFTAAGRQEILVRQSDLDAARELLAAPTDE
Ga0193728_12434501	3300019890	Soil	MGQSEGVVLTVVSGEPEADVVCGLLRSAGIDCAYRDTEAIDSSLEEFTAAGPREILVRASDL
Ga0197907_100970722	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VEADAVVLTVVSSESEAEVVCGLLRTEGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG
Ga0210381_100428961	3300021078	Groundwater Sediment	VEGDQTVVLTVVPGETEAEVLCGLLRANGIECGYRDTDAIDSPLEDFMTAGPREILVHEADLET
Ga0193694_10105162	3300021415	Soil	MEQEGVVVKVVSGEPEAQIVCGLLRANGIDCGYRDTEAIDSPLEDFQSAGQREILVRPADVETAKALLEESGPDTR
Ga0222622_105596692	3300022756	Groundwater Sediment	MEQEGVVVKVVSGEPEAQIVCGLLRANGIDCGYRDTEAIDSPLEDFQAAGQREILVRPADVETAKALLEESGPDTR
Ga0210142_10007444	3300025552	Natural And Restored Wetlands	VEQEQGVVVKVVSGEPEAQIACGLLRANGIACGYRDTEEIDSPLEDFQAAGQREILVRPADVETAKALLEESGP
Ga0207671_113433791	3300025914	Corn Rhizosphere	VEADDTVVLTVVSSESEAEVVCGLLRTAGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG
Ga0207657_101989901	3300025919	Corn Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMARA
Ga0207652_100519942	3300025921	Corn Rhizosphere	VEADDTVVLTVVSSESEAEVVCGLLRTEGIECAYRDTEEIDSPLEDFIAAGSQEILVHAIEREAAKELLAAQQG
Ga0207646_113462132	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEPGEGVVLTVVSDEPEAEVVCGLLRSAGIDCAYRDTEAIDSPLEDFTAAGAQEILVRESDVEDA
Ga0207687_100709355	3300025927	Miscanthus Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPDTG
Ga0207711_104322772	3300025941	Switchgrass Rhizosphere	MEPNESVVLTVVSGEAEAEVVCGLLRSSGFVCAYRDTPAVDSPLEDFMTAGPREILVRPADLEAARALLEDSAP
Ga0207668_113637781	3300025972	Switchgrass Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAR
Ga0207677_101639233	3300026023	Miscanthus Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMA
Ga0207708_115870901	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MEDTVVVKVVDDEPEAQIVCGLLRSNGIECGYRDTEQIESSLEDFTASGPREIFVRPAAIDNGAWIADETA
Ga0207675_1013226062	3300026118	Switchgrass Rhizosphere	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPGTG
Ga0209056_103288301	3300026538	Soil	MHTDLPSHPASSLCGVEAGDTVVLTVVSGGSEAEVVCGLLRSVGIDCSYRDTEAIDSPLEDFIAAGSREILVREPDLEAAKELLAAQEG
Ga0209474_103716622	3300026550	Soil	VDPGEGVVLTVVSGAPEADIICGLLRTAGIDCAYRDTEAIDSPIEDFIEAGPVEVLVPVSDL
Ga0207529_1021862	3300026811	Soil	VEEDQTVVLTVVPGETEAEVLCGLLRANGIECGYRDTDAIDSPLEDFMTSGPREILVHEADLE
Ga0209811_102560931	3300027821	Surface Soil	VDDDAVVVKTVKDVTEAQIVCGLLRANGFECGFRDTEAIDSPLEDFTQAGAQEILVHAGDAEAARELLGSAVDPA
Ga0268266_118163941	3300028379	Switchgrass Rhizosphere	MESDGTAVVKVVSSEPEAEIVCGLLRSAGIECAFRDTEAIETSLEDFISAGAQEIVVRESDLEA
Ga0265322_100130436	3300028654	Rhizosphere	MEPVEGVVVTVVSGEQEAEVACGLLRANGIDCSYRETDEIDSPLEEFTAAGFREILVRPTDLEAARALLPDASD
Ga0265322_100200582	3300028654	Rhizosphere	MMEPGEGVVLTVVSGEQEAEVACGLLRENGIDCAYRETEEIDSPLEEFTAAGFREILVRPADLEAARALLEPGSA
Ga0307291_10244102	3300028707	Soil	MEQEGVVVKVVSGEPEAQIVCGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPNAG
Ga0307322_100917211	3300028710	Soil	MEREEGVVVTVVSGETEAEVVCGLLRSAGIECAYRDTQAIDSPLEDFIASGPREILVREADA
Ga0307322_100998391	3300028710	Soil	VEGDQTVVLTVVPGETEAEVLCGLLRANGIECGYRDTDAIDSPLEDFMTSGPREILVHEADLETA
Ga0307317_100371402	3300028720	Soil	MEQEGVVVKVVSGEPEAQIVCGLLRANGIDCGYRDTEAIDSPLEDFQSAGQREILVRPADVETAKALLEESGPDTG
Ga0307316_101366842	3300028755	Soil	MESNESVVLTVVSGETEAEIVCGLLRSAGFVCGYRDTQAIDSPMEDFIAAGQREILVRPADLDAARALLEDAAP
Ga0265338_101395692	3300028800	Rhizosphere	MMEPGEGVVLTVVSGEQEAEVACGLLRANGIDCAYRETEEIDSPLEEFTAAGFREILVRPADLEAARALLEPGSA
Ga0308204_103018291	3300031092	Soil	MEPGEGVVLTVVSGGPEADVVCGLLRSAGIDCAYRDTEAIDSSLEEFTAAGPREILVRAADVEAARGR
Ga0307506_103100832	3300031366	Soil	PSHMESNESVVLTVVSGEAEAEVVCGLLRSSGFVCAYRDTPAIDSPLEDFMTAGPREILVRPADLEAARALLEDSAQ
Ga0308175_1003460572	3300031938	Soil	VDSNESVVLTTVSGEAEAEVVCGLLRSAGFVCGYRDTPDIDSPLEDFMTAGPRQILVRPADLEAARALLEDSTTP
Ga0308175_1004657952	3300031938	Soil	VQADDAVVLKVVSGVSEAEVVCGLLRSAGFECAHRDTDAIDSPLEDFIAAGAQEVLVHESDLAAAKELLAPQ
Ga0308176_100378875	3300031996	Soil	PPPVDSNESVVLTTVSGEAEAEVVCGLLRSAGFVCGYRDTPDIDSPLEDFMTAGPRQILVRPADLEAARALLEDSTTP
Ga0308176_108539952	3300031996	Soil	MEQEGVVVKVVSGEPEAQIVCGLLRANGIDCGYRDTDAIDSPLEDFQASGQREILVRPADVETAKALLEDSGP
Ga0306920_1028716352	3300032261	Soil	VADEDVVVATVVSGVAEAEMVCGLLRANGIKCGYRDTEAIDTPLEDFGAAGPQEILVAAADLEDAKLVIAPQDD
Ga0306920_1040068142	3300032261	Soil	VEEEEVVVVTVVSGVPEAEMVCGLLRANGIKCGYRDTEAIDTPLEDFGAAGPQEILVAGADLEDAKSLLATTDDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063998

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences