Metagenome / Metatranscriptome Family F063915

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063915
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	67 residues
Representative Sequence	DSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGLPWSI
Number of Associated Samples	115
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.33 %
% of genes near scaffold ends (potentially truncated)	97.67 %
% of genes from short scaffolds (< 2000 bps)	98.45 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.031 % of family members)
Environment Ontology (ENVO)	Unclassified (44.961 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.062 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 0.00% Coil/Unstructured: 47.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF08446	PAS_2	95.35
PF01144	CoA_trans	0.78
PF07081	DUF1349	0.78
PF00360	PHY	0.78
PF00437	T2SSE	0.78
PF01872	RibD_C	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	96.12
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.78
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.78
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.78
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.78
COG3506	Regulation of enolase protein 1 (function unknown), concanavalin A-like superfamily	Function unknown [S]	0.78
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	79.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.63 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	79.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.78 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	79.84 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.78 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	79.84 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	79.84 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_123745566	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300002076\|JGI24749J21850_1043524	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300003998\|Ga0055472_10170784	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	656	Open in IMG/M
3300005293\|Ga0065715_10624408	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	693	Open in IMG/M
3300005334\|Ga0068869_101373810	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300005339\|Ga0070660_101309571	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	615	Open in IMG/M
3300005340\|Ga0070689_101668630	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300005353\|Ga0070669_101422944	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300005455\|Ga0070663_101303920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	641	Open in IMG/M
3300005457\|Ga0070662_101005898	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	714	Open in IMG/M
3300005548\|Ga0070665_101241609	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300005564\|Ga0070664_101066154	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300005578\|Ga0068854_100203758	All Organisms → cellular organisms → Bacteria → Proteobacteria	1557	Open in IMG/M
3300005617\|Ga0068859_101735126	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005617\|Ga0068859_102551246	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300005840\|Ga0068870_10972125	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	604	Open in IMG/M
3300005842\|Ga0068858_101487280	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	668	Open in IMG/M
3300005844\|Ga0068862_100519704	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1133	Open in IMG/M
3300005844\|Ga0068862_100752992	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	948	Open in IMG/M
3300006175\|Ga0070712_100720420	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300006237\|Ga0097621_102148504	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300006358\|Ga0068871_101964592	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	557	Open in IMG/M
3300006605\|Ga0074057_12113497	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	581	Open in IMG/M
3300006845\|Ga0075421_100152398	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2887	Open in IMG/M
3300006845\|Ga0075421_100485292	All Organisms → cellular organisms → Bacteria → Proteobacteria	1471	Open in IMG/M
3300006881\|Ga0068865_100809800	All Organisms → cellular organisms → Bacteria → Proteobacteria	809	Open in IMG/M
3300006894\|Ga0079215_10766074	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300006904\|Ga0075424_101022824	All Organisms → cellular organisms → Bacteria → Proteobacteria	881	Open in IMG/M
3300006918\|Ga0079216_11058483	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	634	Open in IMG/M
3300006918\|Ga0079216_11556937	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300006953\|Ga0074063_14100623	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300007004\|Ga0079218_11939398	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	669	Open in IMG/M
3300007004\|Ga0079218_13419088	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538	Open in IMG/M
3300009094\|Ga0111539_13541341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300009101\|Ga0105247_11265094	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300009156\|Ga0111538_10463728	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1606	Open in IMG/M
3300009156\|Ga0111538_12145333	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	702	Open in IMG/M
3300009553\|Ga0105249_10670721	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1095	Open in IMG/M
3300010044\|Ga0126310_11824969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300010401\|Ga0134121_10818185	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	897	Open in IMG/M
3300011107\|Ga0151490_1473469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300011119\|Ga0105246_11520268	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	629	Open in IMG/M
3300011420\|Ga0137314_1173157	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	523	Open in IMG/M
3300011441\|Ga0137452_1065298	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1168	Open in IMG/M
3300012015\|Ga0120187_1012846	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300012041\|Ga0137430_1052196	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1110	Open in IMG/M
3300012160\|Ga0137349_1003986	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1945	Open in IMG/M
3300012163\|Ga0137355_1032129	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	967	Open in IMG/M
3300012232\|Ga0137435_1056081	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1160	Open in IMG/M
3300012469\|Ga0150984_103849504	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	561	Open in IMG/M
3300012503\|Ga0157313_1049709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	542	Open in IMG/M
3300012891\|Ga0157305_10287620	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	510	Open in IMG/M
3300012892\|Ga0157294_10269659	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	532	Open in IMG/M
3300012902\|Ga0157291_10401314	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	508	Open in IMG/M
3300012906\|Ga0157295_10348745	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	535	Open in IMG/M
3300012907\|Ga0157283_10090401	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	800	Open in IMG/M
3300012909\|Ga0157290_10302333	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	590	Open in IMG/M
3300012910\|Ga0157308_10457579	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	509	Open in IMG/M
3300012911\|Ga0157301_10399896	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	532	Open in IMG/M
3300012912\|Ga0157306_10270304	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	609	Open in IMG/M
3300012913\|Ga0157298_10454273	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	503	Open in IMG/M
3300012916\|Ga0157310_10451193	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	548	Open in IMG/M
3300013096\|Ga0157307_1039272	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	851	Open in IMG/M
3300013308\|Ga0157375_13089384	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	555	Open in IMG/M
3300014263\|Ga0075324_1084243	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	664	Open in IMG/M
3300014271\|Ga0075326_1021416	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1598	Open in IMG/M
3300014876\|Ga0180064_1045433	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	874	Open in IMG/M
3300014879\|Ga0180062_1014893	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300014968\|Ga0157379_11129654	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	751	Open in IMG/M
3300015200\|Ga0173480_10901184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	574	Open in IMG/M
3300015258\|Ga0180093_1094790	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	726	Open in IMG/M
3300015372\|Ga0132256_100315318	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1651	Open in IMG/M
3300015374\|Ga0132255_104684744	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	579	Open in IMG/M
3300017965\|Ga0190266_10630898	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	655	Open in IMG/M
3300018072\|Ga0184635_10316325	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	607	Open in IMG/M
3300018469\|Ga0190270_12766196	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	553	Open in IMG/M
3300018476\|Ga0190274_10349205	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1406	Open in IMG/M
3300018476\|Ga0190274_10421414	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1303	Open in IMG/M
3300018476\|Ga0190274_11156757	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	856	Open in IMG/M
3300018476\|Ga0190274_12167607	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	653	Open in IMG/M
3300018481\|Ga0190271_10270845	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1743	Open in IMG/M
3300018481\|Ga0190271_12535086	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	614	Open in IMG/M
3300018481\|Ga0190271_13506133	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	525	Open in IMG/M
3300018481\|Ga0190271_13752391	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	508	Open in IMG/M
3300019361\|Ga0173482_10315219	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	694	Open in IMG/M
3300020009\|Ga0193740_1071791	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	520	Open in IMG/M
3300022886\|Ga0247746_1115095	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	666	Open in IMG/M
3300022893\|Ga0247787_1074221	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	523	Open in IMG/M
3300023270\|Ga0247784_1093715	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	762	Open in IMG/M
3300023275\|Ga0247776_10248664	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	665	Open in IMG/M
3300025290\|Ga0207673_1003729	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300025559\|Ga0210087_1071962	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	686	Open in IMG/M
3300025792\|Ga0210143_1067031	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	645	Open in IMG/M
3300025926\|Ga0207659_10400997	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1147	Open in IMG/M
3300025931\|Ga0207644_10500216	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1003	Open in IMG/M
3300025933\|Ga0207706_10946222	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	726	Open in IMG/M
3300025933\|Ga0207706_11045767	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	684	Open in IMG/M
3300025941\|Ga0207711_11229863	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	691	Open in IMG/M
3300025945\|Ga0207679_11185158	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	701	Open in IMG/M
3300025961\|Ga0207712_10577556	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	970	Open in IMG/M
3300025981\|Ga0207640_11808915	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	552	Open in IMG/M
3300026067\|Ga0207678_11911519	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300026089\|Ga0207648_12290117	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300026121\|Ga0207683_10607354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1013	Open in IMG/M
3300027362\|Ga0208320_1038514	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	551	Open in IMG/M
3300027424\|Ga0209984_1002345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2108	Open in IMG/M
3300027691\|Ga0209485_1128134	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	740	Open in IMG/M
3300027873\|Ga0209814_10192116	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	881	Open in IMG/M
3300028379\|Ga0268266_10785961	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	919	Open in IMG/M
3300028381\|Ga0268264_12657836	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300028802\|Ga0307503_10780706	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	544	Open in IMG/M
3300028810\|Ga0307294_10207530	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	679	Open in IMG/M
3300028812\|Ga0247825_10408812	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	959	Open in IMG/M
3300031200\|Ga0307496_10043312	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	741	Open in IMG/M
3300031231\|Ga0170824_108555778	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1005	Open in IMG/M
3300031231\|Ga0170824_126513452	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	541	Open in IMG/M
3300031366\|Ga0307506_10105176	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	932	Open in IMG/M
3300031474\|Ga0170818_115240331	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	551	Open in IMG/M
3300031716\|Ga0310813_11005931	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031847\|Ga0310907_10689864	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	564	Open in IMG/M
3300031858\|Ga0310892_10399307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	894	Open in IMG/M
3300031913\|Ga0310891_10285707	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	578	Open in IMG/M
3300031944\|Ga0310884_10858526	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	558	Open in IMG/M
3300032002\|Ga0307416_100369921	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1459	Open in IMG/M
3300032421\|Ga0310812_10500461	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	547	Open in IMG/M
3300033550\|Ga0247829_11234817	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	619	Open in IMG/M
3300034115\|Ga0364945_0293175	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300034148\|Ga0364927_0103277	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	793	Open in IMG/M
3300034676\|Ga0314801_071012	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	730	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.47%
Host-Associated	Host-Associated	39.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.61%
Plants	Host-Associated → Plants	39.53%
Aquatic	Environmental → Aquatic	10.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.73%
Sediment	Environmental → Aquatic → Sediment	8.53%
Marine	Environmental → Aquatic → Marine	2.33%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.55%
Floodplain	Environmental → Terrestrial → Floodplain	1.55%
Roots	Host-Associated → Plants → Roots	1.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.53%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.55%
Loam	Environmental → Terrestrial → Soil → Loam	1.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.55%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.55%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.55%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.43%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.55%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.55%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.10%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.55%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.55%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.55%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012015	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012163	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT800_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020009	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027362	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1237455661	3300000956	Soil	WLDGLPRTGASTAKIITAATATFDAFARCAAVARRGLPWSI*
JGI24749J21850_10435242	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	AAFFAGDEEGTLPRWTVIVAWLDGLPRIGASTAKIISAAKATFDAFARWARLLEGDSHGRSERM*
Ga0055472_101707841	3300003998	Natural And Restored Wetlands	SGAAFFAGDEESTLPRWILIVAWVDGLPRTGASTTKIISAATATFEAFARWAAVARAGVSWSI*
Ga0065715_106244082	3300005293	Miscanthus Rhizosphere	FAGDEEGTLPRWTVIVAWLDGLPRTGASTAKIISSAKATFDAFARWAAVARGGLPWSI*
Ga0068869_1013738102	3300005334	Miscanthus Rhizosphere	LLQRRLGLAKASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKIISAATTTFDAFARWAAVAREGLPWSI*
Ga0070660_1013095712	3300005339	Corn Rhizosphere	ESGAAFFAGDEEWTLPRWTVVVAWLDGLPRTGASTTKIISAATATFDAFARWAAGARAGVPWSI*
Ga0070689_1016686302	3300005340	Switchgrass Rhizosphere	GQVLIPLLHRRLGVAKDSGAAFFAGDEEGTLPRWTVIVAWLDGLPRIGASTAKIISAAKATFDAFARWARLLEGDSHGRSERM*
Ga0070669_1014229442	3300005353	Switchgrass Rhizosphere	RLGLAKDGGAAFFAGDGEWTLPRWTVVVAWLDGLPRTGASTAKIIEAANATFDALARWAVARGGLPWSI*
Ga0070663_1013039202	3300005455	Corn Rhizosphere	GQALVPLLHRRLGLAKEHGAAFFAGDEERTLPRWAVVVAWLDGLPRTGASTAKIISAAQATFSAFARWAVARGGLPWPI*
Ga0070662_1010058981	3300005457	Corn Rhizosphere	AGDEEQTRARWAAVVTWIDGLPRAGASTARVVGAATATFDAFARWAAVTREELPWSM*
Ga0070665_1012416092	3300005548	Switchgrass Rhizosphere	FFAGDEERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI*
Ga0070664_1010661542	3300005564	Corn Rhizosphere	QVLSPLLHRRLGLTKGSGAAFFAGDEESTLPRWTLIVAWIDGLPRTGASTTRIIGAATATFEAFARWAAVGGAGMPWSI*
Ga0068854_1002037582	3300005578	Corn Rhizosphere	GAAFFAGDEERTLPRWAVVVAWLDGLPRTGASTAKIISAAQATFSAFARWAVARGGLPWPI*
Ga0068859_1017351261	3300005617	Switchgrass Rhizosphere	LHRRLGVAKDSGAAFFAGDEEGTLPRWTVIVAWLDGLPRIGASTAKIISAAKATFDAFARWARLLEGDSHGRSERM*
Ga0068859_1025512462	3300005617	Switchgrass Rhizosphere	IPLLHRRLGIAKESGAAFFAGDEERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI*
Ga0068870_109721251	3300005840	Miscanthus Rhizosphere	KDSGAAFFAGDEERTLPRWAALVAWVDGLPGTGASPAKIIRAATATFSAFARWAAVTRGGSSWT*
Ga0068858_1014872802	3300005842	Switchgrass Rhizosphere	FVGDEERTRPRWAAVVAWIDGLPRTGASTAKVVGAATATFDAFARWASVTRGELPWSM*
Ga0068862_1005197042	3300005844	Switchgrass Rhizosphere	EERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI*
Ga0068862_1007529922	3300005844	Switchgrass Rhizosphere	QVLSPLLHRRLGLAKGSGATFFVGDEERTRPRWAAVVAWIDGLPRTGASTAKVVGAATATFDAFARWASVTRGELPWSM*
Ga0070712_1007204202	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LGGRRITKKKHRRLGLAKGSGAAFFAGDEERTLPRWTVIVAWLDGLPRTGASTAQIISAATATFDAFARWSAVAQGGLPWSI*
Ga0097621_1021485042	3300006237	Miscanthus Rhizosphere	LHRRLGLAKDGGAAFFAGDGERTLPRWTVVVAWLDGLPRTGASTAKIIGAANATFDALARWARLPEGD*
Ga0068871_1019645921	3300006358	Miscanthus Rhizosphere	AFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAQIISAATATFDAFARWAAVARGGLPWSI
Ga0074057_121134972	3300006605	Soil	FFAGDEELTLPRWAVVVAWLEGLPRTGASVPKIINAATATFDAFARWAAARGGLPWSI*
Ga0075421_1001523981	3300006845	Populus Rhizosphere	KASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAGLEGECRGRSERL*
Ga0075421_1004852921	3300006845	Populus Rhizosphere	GAAFFAGDEEWTRPRWTVVVAWLDGLPCTGASTTKIISAAKATFDAFVRWAAVAQGDCHGRSEGL*
Ga0068865_1008098002	3300006881	Miscanthus Rhizosphere	LIPLLHRRLGIAKESGAAFFAGDEERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI*
Ga0079215_107660741	3300006894	Agricultural Soil	PRWTVIVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVARGGSPWPI*
Ga0075424_1010228242	3300006904	Populus Rhizosphere	SGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKIISAATTTFDAFARWAAVAREGLPWSI*
Ga0079216_110584832	3300006918	Agricultural Soil	GQVLSPLLHRRLGLAKGSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAALLEGECRGRSERL*
Ga0079216_115569371	3300006918	Agricultural Soil	SGAAFFAGDEERTLPRWTVIVAWLDGLPRTGASTAHIVSAAKATFDAFARWAAVARGGSPWSI*
Ga0074063_141006232	3300006953	Soil	IPLLHRRLGLAKDSGAAFFAGDEERTLPRWTVVVAWLDGLPRTGASTAKIISAAKATFDAFARWAALARGGLPWSI*
Ga0079218_119393982	3300007004	Agricultural Soil	VAWLDGLPRTGASTAKIISAAKATFDAFARWAAVARSGLPWSI*
Ga0079218_134190881	3300007004	Agricultural Soil	GTGAAFFAGDEEKTLPRWEVIVAWLDGLPHNGASSAKIIGAATGTFDAFARWVALSRRRMSWST*
Ga0111539_135413412	3300009094	Populus Rhizosphere	QVLIPLLHRRLGIAKESGAAFFAGDEERTLPRWTIVVAWLDGLPRTGASTTKIVSAAKATFEAFARWAAVAREGLPWSI*
Ga0105247_112650941	3300009101	Switchgrass Rhizosphere	GGQVVSPLLHRRLGLANGSGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKIISAATTTFDAFARWAAVAREGLPWSI*
Ga0111538_104637281	3300009156	Populus Rhizosphere	LGLAKESGAAFFAGDGDGTLPRWTVVVAWLDGLPRTGASSAKIVNAATATFDAFARWAAVARRGSPWSI*
Ga0111538_121453331	3300009156	Populus Rhizosphere	SGAAFFAGDEEWTLPRWTVVVAWLDGLPHTGASTAKIISAAKATFDAFARWAAVARGGLPWSI*
Ga0105249_106707212	3300009553	Switchgrass Rhizosphere	TFFVGDEERTRPRWAAVVAWIDGLPRTGASTAKVVGAATATFDAFARWASVTRGELPWSM
Ga0126310_118249692	3300010044	Serpentine Soil	SALLHRRLGLTKGSGAAFFAGDEESTLPRWTLVVAWIDGLPRTGASTTKIISAATATFDAFARWAAVARAGVPWSI*
Ga0134121_108181852	3300010401	Terrestrial Soil	FAGDGEATLPRWTVVVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVARRGLPWSI*
Ga0151490_14734692	3300011107	Soil	LSPLLHRRLGLAKGSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAQIISAATATFDAFARWAAVARGGSPWSI*
Ga0105246_115202682	3300011119	Miscanthus Rhizosphere	GGRVVSALLNRRLGLTKASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKVISAATASFDAFARWAAVAREGLPWSI*
Ga0137314_11731571	3300011420	Soil	VLTPLLHRRLDLAKDSGAAFFAGDEEWTLPRWTVVVAWLDGLPRTGASTTRIISAATATFDAFARWAAVARGGVPWSI*
Ga0137452_10652982	3300011441	Soil	LAKDSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASIAKIISAAKATFDAFARWAAVARGGLPWSI*
Ga0120187_10128462	3300012015	Terrestrial	LHRRLGLAKGSGAAFFAGDEEGTLARWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGFRWSI*
Ga0137430_10521961	3300012041	Soil	AAFFAGDEERTLPRWTVIVAWLDGLPRTGASSAKIISAAKATFDAFARWAAVARGGLPWSI*
Ga0137349_10039862	3300012160	Soil	RRLGIAKDSGAAFFAGDEERTLPRWTVIVAWLDGLPRTGASTAQIISAAKATFDAFARWASVARGGLPWSI*
Ga0137355_10321291	3300012163	Soil	RRLGLAKEDGAAFFAGDGEWTLPRWTVVVAWLDGLPSTGASPAQIISAAKATFDAFARWAAVARGGSPWSI*
Ga0137435_10560812	3300012232	Soil	GGQALTPLLHRRLDLAKDSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASSAKIITAATATFDAFGRWAAGTREGLPWSI*
Ga0150984_1038495042	3300012469	Avena Fatua Rhizosphere	AKGSGAAFFAGDEERTLPRWTVVVDWLDGLPRTGASTAKIIRAAQATFSAFARWAAVAREELSWRI*
Ga0157313_10497091	3300012503	Arabidopsis Rhizosphere	PLLHRRLGLAKGSGAAFFAGDEEWTLPRWAVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAGLEGECRGRSERL*
Ga0157305_102876202	3300012891	Soil	LIPLLHRRLGLAKDSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVARGGLPCSI*
Ga0157294_102696592	3300012892	Soil	LCPLLHRRLGLAKESGAAFFAGDEEWTLPRWTVIVAWLDDLPRAGASTVKIISAATATFDAFARWAAVPRGGLPWSI*
Ga0157291_104013142	3300012902	Soil	LTPLLHRRLGLTKGSGAAFFAGDEKSTLPRWTVIVAWLDELPRTGASTTRIISAATATFDAFARWAAVARAGVPWSI*
Ga0157295_103487451	3300012906	Soil	LLHRRLGLAKGSGAAFFAGDEEWTLPRWAVIVAWLDGLPRAGASTAKIISAATATFEAFTRWAAGARGGLPWSI*
Ga0157283_100904012	3300012907	Soil	LLHRRLGLAKESGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAKIISAAKATFEAFARWAAVARGGSPWSI*
Ga0157290_103023332	3300012909	Soil	FAGDGEGTLPRWNAVVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGSPWSI*
Ga0157308_104575792	3300012910	Soil	AKDSGAAFFAGDGEGTLPRWTAVVAWLDGLPRTGASTAKIISAAKATFEAFARWAAVARGGSPWSI*
Ga0157301_103998962	3300012911	Soil	KDSGAAFFAGDEERTLPRWTVVVAWLDGLPRTGASTAKIISAATTTFDAFARWAAVAREGLPWSI*
Ga0157306_102703042	3300012912	Soil	FFAGDEERTLPRWAAIVAWLDGLPLTGASTAKIIHTATATFDAFARWAVVARGASPWSI*
Ga0157298_104542732	3300012913	Soil	PLLHRRLGLAKDSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAKIISAAKATFEAFARWAAVARGGSPWSI*
Ga0157310_104511931	3300012916	Soil	PLLHRRLGLTKGSGAAFFAGDEESTLPRWTLIVAWVDGLPRTGASTTRIIGAATATFEAFARWAAVGGAGMPWSI*
Ga0157307_10392722	3300013096	Soil	PRWTVVVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVDREGLSWSI*
Ga0157375_130893842	3300013308	Miscanthus Rhizosphere	AFFAGDEEATLPRWTFIVAWIDGLPRAGASTTKIISAATATFEAFARWAAVARAGVPWSI
Ga0075324_10842431	3300014263	Natural And Restored Wetlands	PLLHRRLGLAKDSGAAFFAGDEEWTLPRWTIVVAWLDGLPRTGASTAKIISAAKATFNAFARWAAVAQGGLRWSI*
Ga0075326_10214161	3300014271	Natural And Restored Wetlands	GQVLIPLLHRRLGLAKDSGAAFFAGDEEWTLPRWTAIVAWLDGLPRTGASTAKIISAAKATFDAFARWATVARGDCRGRSERM*
Ga0180064_10454332	3300014876	Soil	WTLPRWTVVVAWLDGLPRTGASTAKIISAAKATFDAFARWASGARGELPWSI*
Ga0180062_10148933	3300014879	Soil	DEEWTLPRWTVIVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVARGGLPWSI*
Ga0157379_111296542	3300014968	Switchgrass Rhizosphere	GGQALIPLLHRRIGLAKDSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTSKIISAASATFDAFARWAAVARGGLPWPI*
Ga0173480_109011842	3300015200	Soil	VVAWLDGLPRTGASTAKIISAADATFSAFARWAAVARGELSWSI*
Ga0180093_10947902	3300015258	Soil	LHRRLGLAKDSGAAFFAGDEEWTLPRWTVVVAWLDGLPRTGASTTKIISAATATFDAFARWAAVARGGVPWSI*
Ga0132256_1003153182	3300015372	Arabidopsis Rhizosphere	TGVVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGLPWSI*
Ga0132255_1046847442	3300015374	Arabidopsis Rhizosphere	LVHRRLGLAKETGAAFFAGDGEGTLPRWTVVVGWLDGLPRTGASTAKIITAATATFDAFARWAAIARGGLP*
Ga0190266_106308982	3300017965	Soil	WLDGLPRTGASTVKIISAAKATFEAFARWAAVARGGLPWSI
Ga0184635_103163251	3300018072	Groundwater Sediment	YALLHRRLGLAKESGAAFFAGDGEWTLPRWTVIMAWLDGLPGAGASTAKIISTAAATFDAFARWAAVARGGPPWSI
Ga0190270_127661961	3300018469	Soil	VLSPLLHRRLGLAKGSGAAFFAGDEERTLPRWAAIVAWIDGLPRTGASTAKVVGAATATFDAFARWAAVTRGELPWSM
Ga0190274_103492051	3300018476	Soil	SALLHRRLGLAKESGAAFFAGDGEGTLPRWTAVVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGSPWSI
Ga0190274_104214141	3300018476	Soil	HRRLGLAKDGGAAFFAGDGEWTLPRWTVVVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGLPWSI
Ga0190274_111567571	3300018476	Soil	LIPLLHRRLGLAKDGGAAFFAGDEGRTLPRWTIVVAWLDGLPRTGASTAKIVSAAKATFDAFARWAAAARGGLPWSN
Ga0190274_121676071	3300018476	Soil	QVLTPLLHRRLGVAKDSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAQIISAAKATFDAFARWAAVARGGLPWSI
Ga0190271_102708452	3300018481	Soil	LHRRLGLAKDSGAAFFAGDEEWTLPRWTVVVAWLDGLPRTGASTTRIISAATATFDAFARWAAVARAGVPWSI
Ga0190271_125350862	3300018481	Soil	LHRRLGLTKGSGAAFFAGDEEATLPRWTLFVAWVDGLPRTGASTTKIIRAATATFDAFARWATVARAGVPWSI
Ga0190271_135061332	3300018481	Soil	LYRRLGLAKGSGAAFFAGDEESTLPRWAVIVAWLDGLPRTGASTAKIVGAAEATFGAFARWAAVAREGLPWSI
Ga0190271_137523911	3300018481	Soil	DSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGLPWSI
Ga0173482_103152192	3300019361	Soil	FFAGDEEMTLPRWAVVVAWLDGLPRTGASSAKIISAANATFDAFARWAAVGRGGFLWSI
Ga0193740_10717912	3300020009	Soil	KDQTLPRWSIVVAWLDGLPRAGASPAKIVSAATGTFDAFARWAGVARGGLSWSI
Ga0247746_11150952	3300022886	Soil	AFFAGDEERTLPRWSVIVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVPRGGLPWSI
Ga0247787_10742211	3300022893	Soil	FFAGDEERTLPRWAAIVAWLDGLPRTGASTPKIIRAATATFSAFARWAAVTRGGSSWT
Ga0247784_10937151	3300023270	Plant Litter	GGQVLIPLLHRRLGIAKDSGAAFFAGDEERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI
Ga0247776_102486641	3300023275	Plant Litter	IPLLHRRLGIAKESGAAFFAGDEERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI
Ga0207673_10037292	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	LHRRLGLTKDSGAAFFAGDEARTLPRWTVIAAWLDGLPRTGASSAKIISAANATFDAFARWAAVGRGGLPWSI
Ga0210087_10719622	3300025559	Natural And Restored Wetlands	LGLAKDSGAAFFAGDEEWTLPRWTVVVAWLDGLPRTGASTAKIISAAKATFNAFARWAAVAQGGLRWSI
Ga0210143_10670311	3300025792	Natural And Restored Wetlands	SGAAFFAGDEESTLPRWILIVAWVDGLPRTGASTTKIISAATATFEAFARWAAVARAGVSWSI
Ga0207659_104009971	3300025926	Miscanthus Rhizosphere	LGGQVLTPLLYRRLGVAKGSGAAFFAGDEEGTLQRWAVVVAWLDGLPRMGASTTKIISTATATFEAFARWATVARGDSCGRSERL
Ga0207644_105002162	3300025931	Switchgrass Rhizosphere	LGLTKGSGAAFFAGDEESTLPRWTLVVAWVDGLPRTGASTTRIIGAATATFEAFARWAAVGGAGMPWSI
Ga0207706_109462221	3300025933	Corn Rhizosphere	LPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVDREGLPWSI
Ga0207706_110457672	3300025933	Corn Rhizosphere	AGDEEQTRARWAAVVTWIDGLPRAGASTARVVGAATATFDAFARWAAVTREELPWSM
Ga0207711_112298632	3300025941	Switchgrass Rhizosphere	GSGATFFVGDEERTRPRWAAVVAWIDGLPRTGASTAKVVGAATATFDAFARWASVTRGELPWSM
Ga0207679_111851583	3300025945	Corn Rhizosphere	KASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKVISAATASFDAFARWAAVAREGLPWSI
Ga0207712_105775561	3300025961	Switchgrass Rhizosphere	WAAVVAWIDGLPRTGASTAKVVGAATATFDAFARWASVTRGELPWSM
Ga0207640_118089151	3300025981	Corn Rhizosphere	CLGGQFLTPLLHRRLGLAKGSGAAFFAGDEELTLPRWTIVVAWLDGLPRAGASTAKIVSAATATFIALARWAAAPGRSPWST
Ga0207678_119115191	3300026067	Corn Rhizosphere	GQALVPLLHRRLGLAKEHGAAFFAGDEERTLPRWAVVVAWLDGLPRTGASTAKIISAAQATFSAFARWAVARGGLPWPI
Ga0207648_122901171	3300026089	Miscanthus Rhizosphere	EERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI
Ga0207683_106073543	3300026121	Miscanthus Rhizosphere	DSGAAFFAGDDEWTLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGLPWSI
Ga0208320_10385141	3300027362	Soil	FAGDEEGTLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVARGGVPWSI
Ga0209984_10023451	3300027424	Arabidopsis Thaliana Rhizosphere	AGDEESTLPRWTIIVAWLDGLPRTGASTALIIRTAKATFDAFARWAAVPRGGLPWSI
Ga0209485_11281342	3300027691	Agricultural Soil	KASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAALLEGECRGRSERL
Ga0209814_101921162	3300027873	Populus Rhizosphere	QVLSPLLHRRLGLAKASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAGLEGECRGRSERL
Ga0268266_107859611	3300028379	Switchgrass Rhizosphere	LGIAKESGAAFFAGDEERTLPRWAVIVAWLDGLPGTGASTAKIISAAKATFDAFARWAAVARGGLPCSI
Ga0268264_126578361	3300028381	Switchgrass Rhizosphere	RLGLAKASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKIISAATTTFDAFARWAAVAREGLPWSI
Ga0307503_107807061	3300028802	Soil	HRRLGLAKDNGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASPARIISAAKETFDAFARWAAAARGGLSWST
Ga0307294_102075302	3300028810	Soil	DTGTGFFAGDEELTLPRWTIVVAWLDGLPRAGASAPKIVGAATATFDAFARWAAAAREGVPWSI
Ga0247825_104088122	3300028812	Soil	LLHRRLGLAKESGAAFFAGDEKWTLPRWTVIVAWLDDLPRAGASTVKIISAATATFDAFARWAAVPRGGLPWSI
Ga0307496_100433121	3300031200	Soil	GGQVISPLLHRRLGLTKGSGAAFFAGDEEATLPRWTLFVAWVDGLPRTGASTTKIISAATATFDAFARWAAVARAGVPWSI
Ga0170824_1085557782	3300031231	Forest Soil	RRLGLTKGSGAAFFAGDEESTLPRWTLIVAWIDGLPRAGASTTKIISAATATFDAFARWATVARAGVPWSI
Ga0170824_1265134521	3300031231	Forest Soil	DGLPRTGASTATIIRAATATFDAFARWAAVDRGGLPWSI
Ga0307506_101051762	3300031366	Soil	AKDGGAAFFAGDGEWTLPRWTVVVAWLDGLPGTGASTARIIGAANATFDALARWARLLEGGERWPI
Ga0170818_1152403312	3300031474	Forest Soil	AAFFAGDEELTLPRWTVVVAWLDGLPGTGASTAKIISAAQATFTAFARWAADAPGGLPWS
Ga0310813_110059311	3300031716	Soil	RSGAAFFAGDEERTLPRWTVVVAWLDGLPRTGASTAKIIAAATATFDAFARWAIVRRGLPWSI
Ga0310907_106898641	3300031847	Soil	TLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVDREGLPWSI
Ga0310892_103993071	3300031858	Soil	AFFAGDEERTLPRWGAIVAWLDGLPRTGASTATIVGAATATFDAFARWAAGTRGRAPWSI
Ga0310891_102857071	3300031913	Soil	AGDEEWTLPRWTVIVAWLDGLPRTGASTVKIISAAKETFDAFARWAAVARGESPWSI
Ga0310884_108585261	3300031944	Soil	KDSGAAFFAGDEESTLPRWTVVVAWLDGLPRTGASTAKIISAAKATFDAFARWAAVARGGLPWSI
Ga0307416_1003699211	3300032002	Rhizosphere	LSPLLHRRLGLTKESGAAFFAGDEESTLPRWTLIVAWVDGLPRTGASTTKIISAATATFDAFARWAAVTRAGVPWSI
Ga0310812_105004611	3300032421	Soil	ASGAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKIISAATTTFDAFARWAAVAREGLPWSI
Ga0247829_112348172	3300033550	Soil	AAFFAGDDEWTLPRWTVIVAWLDGLPRTGASTAKIISAATATFDAFARWAAVDREGLPWS
Ga0364945_0293175_3_218	3300034115	Sediment	RRLGLAKGSGAAFFAGDEEWTLPRWTVIVAWLDGLPRTGASIAKIISAAKATFDAFARWAAVARGGVPWSI
Ga0364927_0103277_55_276	3300034148	Sediment	LHRRLGLAKDSGAAFFAGDEERTLPRWTAVVAWLDGLPRTGASTAKIISAATATFDAFARWAAVDREGLPWSI
Ga0314801_071012_2_190	3300034676	Soil	GAAFFAGDEEGTLHRWTVIVAWLDGLPRTGASSAKIISAATTTFDAFARWAAVAREGLPWSI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063915

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences