Metagenome / Metatranscriptome Family F063899

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F063899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	51 residues
Representative Sequence	PPPYRAVPGGAVYHLRADDQVVLVAEHDLSGPLYDLVTAVLAIGEAPH
Number of Associated Samples	110
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.69 %
% of genes near scaffold ends (potentially truncated)	90.70 %
% of genes from short scaffolds (< 2000 bps)	86.82 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (65.891 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.907 % of family members)
Environment Ontology (ENVO)	Unclassified (31.008 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.860 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.05% β-sheet: 15.79% Coil/Unstructured: 63.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF03625	DUF302	4.65
PF08044	DUF1707	3.88
PF00534	Glycos_transf_1	2.33
PF13466	STAS_2	2.33
PF12900	Pyridox_ox_2	2.33
PF01804	Penicil_amidase	2.33
PF13826	DUF4188	1.55
PF05199	GMC_oxred_C	1.55
PF08031	BBE	1.55
PF13460	NAD_binding_10	1.55
PF13560	HTH_31	1.55
PF01625	PMSR	1.55
PF13808	DDE_Tnp_1_assoc	0.78
PF00296	Bac_luciferase	0.78
PF05114	DUF692	0.78
PF14329	DUF4386	0.78
PF06723	MreB_Mbl	0.78
PF13649	Methyltransf_25	0.78
PF11716	MDMPI_N	0.78
PF14026	DUF4242	0.78
PF07690	MFS_1	0.78
PF03109	ABC1	0.78
PF13193	AMP-binding_C	0.78
PF16864	Dimerisation2	0.78
PF05988	DUF899	0.78
PF01740	STAS	0.78
PF00266	Aminotran_5	0.78
PF13302	Acetyltransf_3	0.78
PF04542	Sigma70_r2	0.78
PF04075	F420H2_quin_red	0.78
PF13336	AcetylCoA_hyd_C	0.78
PF13474	SnoaL_3	0.78
PF13359	DDE_Tnp_4	0.78
PF00196	GerE	0.78
PF00582	Usp	0.78
PF00106	adh_short	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	4.65
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.33
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	1.55
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.55
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.55
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.78
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	0.78
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.78
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.78
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.78
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.78
COG3220	Uncharacterized conserved protein, UPF0276 family	Function unknown [S]	0.78
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.78
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.89 %
Unclassified	root	N/A	34.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.89 %
Unclassified	root	N/A	34.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.89 %
Unclassified	root	N/A	34.11 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.26 %
Unclassified	root	N/A	34.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.39 %
Unclassified	root	N/A	34.11 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	44.96 %
Unclassified	root	N/A	34.11 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.11 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	24.03 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	5.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.10 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.55 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.55 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.03 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.10 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.55 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.55 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.78 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.03 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.10 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	1.55 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.78 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.78 %
unclassified Streptosporangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae	0.78 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.03 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	3.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.10 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1.55 %
Microbacterium azadirachtae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium azadirachtae	0.78 %
Streptosporangiaceae bacterium NEAU-GS5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5	0.78 %
Streptomyces avermitilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces avermitilis	0.78 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.78 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.03 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.10 %
Streptomyces sp. TRM70350	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TRM70350	2.33 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1.55 %
Streptomyces sp. RB17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. RB17	0.78 %
Streptomyces sp. Tu6071	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Tu6071	0.78 %
Microbacterium azadirachtae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium azadirachtae	0.78 %
Streptosporangiaceae bacterium NEAU-GS5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5	0.78 %
Streptomyces avermitilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces avermitilis	0.78 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.78 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459012\|GOYVCMS01D8ADA	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300000955\|JGI1027J12803_103254239	Not Available	614	Open in IMG/M
3300003659\|JGI25404J52841_10130737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300004479\|Ga0062595_102329988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300005185\|Ga0066811_1023932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300005439\|Ga0070711_100165270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1681	Open in IMG/M
3300005440\|Ga0070705_101813147	Not Available	518	Open in IMG/M
3300005466\|Ga0070685_10377291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	976	Open in IMG/M
3300005468\|Ga0070707_100760219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	932	Open in IMG/M
3300005764\|Ga0066903_102721349	Not Available	959	Open in IMG/M
3300006175\|Ga0070712_101574755	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300006576\|Ga0074047_11727631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300006755\|Ga0079222_10478140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	903	Open in IMG/M
3300006852\|Ga0075433_11629160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300006914\|Ga0075436_100415104	Not Available	977	Open in IMG/M
3300006954\|Ga0079219_10668525	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300009036\|Ga0105244_10491600	Not Available	565	Open in IMG/M
3300009093\|Ga0105240_11589774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300009143\|Ga0099792_10088693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1600	Open in IMG/M
3300009551\|Ga0105238_13024049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505	Open in IMG/M
3300009792\|Ga0126374_10340220	Not Available	1024	Open in IMG/M
3300010043\|Ga0126380_11080197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300010154\|Ga0127503_10605324	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300010159\|Ga0099796_10131418	Not Available	971	Open in IMG/M
3300010337\|Ga0134062_10225249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	863	Open in IMG/M
3300010360\|Ga0126372_13182390	Not Available	510	Open in IMG/M
3300010361\|Ga0126378_11194805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	859	Open in IMG/M
3300010361\|Ga0126378_11896866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300010361\|Ga0126378_13214730	Not Available	520	Open in IMG/M
3300010376\|Ga0126381_101046213	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300010379\|Ga0136449_100251430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Tu6071	3283	Open in IMG/M
3300010379\|Ga0136449_101986237	Not Available	860	Open in IMG/M
3300010379\|Ga0136449_102497198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	741	Open in IMG/M
3300010379\|Ga0136449_102828718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300011107\|Ga0151490_1440162	Not Available	513	Open in IMG/M
3300012096\|Ga0137389_10544417	Not Available	997	Open in IMG/M
3300012189\|Ga0137388_10678821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300012206\|Ga0137380_10508127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1061	Open in IMG/M
3300012208\|Ga0137376_10814674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces avermitilis	803	Open in IMG/M
3300012285\|Ga0137370_10446553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300012356\|Ga0137371_10525861	Not Available	912	Open in IMG/M
3300012361\|Ga0137360_10526811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1008	Open in IMG/M
3300012515\|Ga0157338_1088461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300012924\|Ga0137413_10676767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	780	Open in IMG/M
3300012948\|Ga0126375_10094515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1752	Open in IMG/M
3300013306\|Ga0163162_10803530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1058	Open in IMG/M
3300014745\|Ga0157377_10817810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300016319\|Ga0182033_10505694	Not Available	1039	Open in IMG/M
3300016341\|Ga0182035_11437128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300017926\|Ga0187807_1158860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724	Open in IMG/M
3300018001\|Ga0187815_10472732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300018006\|Ga0187804_10201906	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300018058\|Ga0187766_11332322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300020070\|Ga0206356_10531390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	818	Open in IMG/M
3300020150\|Ga0187768_1026718	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300020579\|Ga0210407_10147818	Not Available	1810	Open in IMG/M
3300020579\|Ga0210407_11089150	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300020580\|Ga0210403_10928324	Not Available	685	Open in IMG/M
3300020582\|Ga0210395_10768700	Not Available	719	Open in IMG/M
3300021404\|Ga0210389_10302492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium azadirachtae	1254	Open in IMG/M
3300025910\|Ga0207684_11140122	Not Available	648	Open in IMG/M
3300025916\|Ga0207663_10041167	Not Available	2813	Open in IMG/M
3300025922\|Ga0207646_10112837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	2440	Open in IMG/M
3300025924\|Ga0207694_10981472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300025928\|Ga0207700_11140777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	696	Open in IMG/M
3300025929\|Ga0207664_11876302	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300025933\|Ga0207706_10888836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300025945\|Ga0207679_10759986	Not Available	882	Open in IMG/M
3300026023\|Ga0207677_10530927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1022	Open in IMG/M
3300026551\|Ga0209648_10547359	Not Available	648	Open in IMG/M
3300027646\|Ga0209466_1116145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300027654\|Ga0209799_1087502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300027696\|Ga0208696_1064028	Not Available	1263	Open in IMG/M
3300027765\|Ga0209073_10306375	Not Available	631	Open in IMG/M
3300027812\|Ga0209656_10498722	Not Available	532	Open in IMG/M
3300028711\|Ga0307293_10232646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300028787\|Ga0307323_10043105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1584	Open in IMG/M
3300028799\|Ga0307284_10311102	Not Available	634	Open in IMG/M
3300028799\|Ga0307284_10404512	Not Available	556	Open in IMG/M
3300028906\|Ga0308309_11448927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	588	Open in IMG/M
3300031543\|Ga0318516_10613028	Not Available	621	Open in IMG/M
3300031572\|Ga0318515_10614261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TRM70350	577	Open in IMG/M
3300031668\|Ga0318542_10325716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	788	Open in IMG/M
3300031708\|Ga0310686_109373315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2750	Open in IMG/M
3300031719\|Ga0306917_10279796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1285	Open in IMG/M
3300031720\|Ga0307469_10085556	Not Available	2154	Open in IMG/M
3300031736\|Ga0318501_10790499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TRM70350	525	Open in IMG/M
3300031765\|Ga0318554_10336116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TRM70350	859	Open in IMG/M
3300031768\|Ga0318509_10624420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300031777\|Ga0318543_10029087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2135	Open in IMG/M
3300031777\|Ga0318543_10165283	Not Available	976	Open in IMG/M
3300031779\|Ga0318566_10212276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	961	Open in IMG/M
3300031781\|Ga0318547_10998028	Not Available	523	Open in IMG/M
3300031821\|Ga0318567_10873612	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031859\|Ga0318527_10324923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	655	Open in IMG/M
3300031859\|Ga0318527_10395859	Not Available	589	Open in IMG/M
3300031879\|Ga0306919_10534160	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300031897\|Ga0318520_10698639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300031939\|Ga0308174_11391192	All Organisms → cellular organisms → Bacteria → Terrabacteria group	601	Open in IMG/M
3300031941\|Ga0310912_11314956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300031942\|Ga0310916_10105470	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300031947\|Ga0310909_10097535	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
3300031954\|Ga0306926_10384286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1734	Open in IMG/M
3300031954\|Ga0306926_11555519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	761	Open in IMG/M
3300031981\|Ga0318531_10023459	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300032010\|Ga0318569_10026406	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
3300032010\|Ga0318569_10202625	Not Available	919	Open in IMG/M
3300032010\|Ga0318569_10294575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	755	Open in IMG/M
3300032035\|Ga0310911_10395980	Not Available	799	Open in IMG/M
3300032039\|Ga0318559_10487425	Not Available	575	Open in IMG/M
3300032060\|Ga0318505_10056846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1691	Open in IMG/M
3300032068\|Ga0318553_10019010	Not Available	3168	Open in IMG/M
3300032160\|Ga0311301_10503512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1794	Open in IMG/M
3300032160\|Ga0311301_11336898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300032160\|Ga0311301_13017757	Not Available	505	Open in IMG/M
3300032205\|Ga0307472_100733733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5	893	Open in IMG/M
3300032205\|Ga0307472_100777765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	871	Open in IMG/M
3300032261\|Ga0306920_100429341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1964	Open in IMG/M
3300032261\|Ga0306920_100919460	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300032261\|Ga0306920_104423068	Not Available	503	Open in IMG/M
3300032829\|Ga0335070_10211358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. RB17	1925	Open in IMG/M
3300033134\|Ga0335073_11740645	Not Available	586	Open in IMG/M
3300033290\|Ga0318519_10130630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1385	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.92%
Host-Associated	Host-Associated	10.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.05%
Plants	Host-Associated → Plants	10.08%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.10%
Freshwater	Environmental → Aquatic → Freshwater	3.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.09%
Loam	Environmental → Terrestrial → Soil → Loam	10.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.10%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.10%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.10%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.55%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.10%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.78%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.20%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.55%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.55%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.78%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N56_09779130	2170459012	Grass Soil	PYRPVPGGPVYHLRVDDQVVLVSEHDLAGPLYDLVTAVLAIGEAPH
JGI1027J12803_1032542391	3300000955	Soil	GAAGTWEELIVRALATAPLYRPVPGDPVYYLCVDDQVVLVAEHDLSGALYDLVTAVLAIGEAPY*
JGI25404J52841_101307372	3300003659	Tabebuia Heterophylla Rhizosphere	PAPGGPVYHLRVDGGAVLVAEHDLSGALSDLVTAVLAIGEAM*
Ga0062595_1023299881	3300004479	Soil	VPGGPVYHLRVDDQVVLVAEHDLSGPLYDLVTAVLAIGEAPR*
Ga0066811_10239322	3300005185	Soil	AVRPPYRPVPGSPVYHLRVDEGAVLVAEHDLFGPLSDLVTAVLAIGEAV*
Ga0070711_1001652704	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PVPGGTVYHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH*
Ga0070705_1018131471	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GTVCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH*
Ga0070685_103772911	3300005466	Switchgrass Rhizosphere	ALLARALAALPPYRAVPEGTVCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH*
Ga0070707_1007602191	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VPWPSLPPYRAVPGGAVCHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGET
Ga0066903_1027213492	3300005764	Tropical Forest Soil	GGAGPWEELIARALAAPPPYRAVPGGPVYHLRVGEQSVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0070712_1015747551	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SLPSYRAVPGGAVYHLRVDDQVVLVAEQDLSGPLYDLVTAVLVIGEPPH*
Ga0074047_117276313	3300006576	Soil	RALAVRPPYRPVPGSPVYHLRVDEGAVLVAEHDLFGPLSDLVTAVLAIGEAV*
Ga0079222_104781402	3300006755	Agricultural Soil	EELLARALAALPPYRAVPGGTVYHLRVDDQVVLVAGQDLSGPLYDLVTAVLAIGEPPH*
Ga0075433_116291601	3300006852	Populus Rhizosphere	TAAAGDVGPWEDLAARALAAPSPYHPVPGGPVYHLRVDDRVVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0075436_1004151043	3300006914	Populus Rhizosphere	VYHLRVDDQVVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0079219_106685251	3300006954	Agricultural Soil	GDVVGPWEELTARALAALPPYRPVPGGPVYHLRVDDQVALVAEPDLSGPLYDLVTAVLAIGEAPD*
Ga0105244_104916001	3300009036	Miscanthus Rhizosphere	VPWPSLPPYRAVPGGAVCHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGEPPH*
Ga0105240_115897742	3300009093	Corn Rhizosphere	SPYHPVPGGPVYHLRVDDRVVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0099792_100886933	3300009143	Vadose Zone Soil	GTVCHLRVGDQVALVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0105238_130240492	3300009551	Corn Rhizosphere	ALAALPPYRPVPGGALCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH*
Ga0126374_103402201	3300009792	Tropical Forest Soil	AAPGGSGPWEELIARALAAPPPYRAVPGGPVYHLRVGEQSVLVAEHDLSGPLYDLVTAVLAIGEEPH*
Ga0126380_110801972	3300010043	Tropical Forest Soil	ELWEANIARALATEPPPYRPVAGSPVCHLRLNDQVVLVAEHDLGGPLRDLVTAVLAVGEPV*
Ga0127503_106053241	3300010154	Soil	DTGPWDELLVRALASLGPYRAVPGEAVCHLRVDDQVVLVAEHDLSGPLYDLVTAVRAIGETPH*
Ga0099796_101314182	3300010159	Vadose Zone Soil	VPWPPCRAVPGGTVCHLRVGDQVALVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0134062_102252493	3300010337	Grasslands Soil	AFYPPYRPVPGSPVYHLRVDDGAFMVSEHDLFGPLSDLVTAVLAVGEAR*
Ga0126372_131823902	3300010360	Tropical Forest Soil	PGDPVYHLRVDEQVVLVAEDDLSGALSDLVTAVLAIGGAVR*
Ga0126378_111948052	3300010361	Tropical Forest Soil	LAAPPPYRAVPGGPVYHLRVGEQSVLVAEHDLSGPLYDLVTAVLAIGEEPH*
Ga0126378_118968663	3300010361	Tropical Forest Soil	GPVYHLRVGEQSVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0126378_132147302	3300010361	Tropical Forest Soil	AHRPVRGGPVYHLRVDDRVVVIAENDLSGPLSDLVTAVLAIGEAPR*
Ga0126381_1010462131	3300010376	Tropical Forest Soil	YRAVPGGPVYHLRVGEQSVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0136449_1002514303	3300010379	Peatlands Soil	ELIARALAVRPPYRPVPGSPVYHVRVDDRAVLVAEHDLSGPLSDLITAVLAIGEPVD*
Ga0136449_1019862371	3300010379	Peatlands Soil	GSPVYHVRVDDRAVLVAEHDLSGPLSDLITAVLAIGEAAD*
Ga0136449_1024971981	3300010379	Peatlands Soil	YRAVPGGAVYHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH*
Ga0136449_1028287181	3300010379	Peatlands Soil	AVPGGAVYHLRVDDQVVLVAEHDMSGPLYDLVTAVLAIGEPPH*
Ga0151490_14401621	3300011107	Soil	DTGPWEELLARALAALPPYRAVPGGAVCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH*
Ga0137389_105444172	3300012096	Vadose Zone Soil	PFRLVRGGLVYRLRLDDQVVLVAGHDLSGPLYDLVTAVLAIGQAPR*
Ga0137388_106788211	3300012189	Vadose Zone Soil	RALAAPPPYRPVPGGPVYHLRVDERVVLVAEHDLSGPLYDLVTAVLAIGQAPR*
Ga0137364_107815602	3300012198	Vadose Zone Soil	CHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGETPH*
Ga0137380_105081272	3300012206	Vadose Zone Soil	RALAAPPPYRPVPGGPVYHLRVGERVVLVAGHDLPGPLYDLVAAVLAIGEAPS*
Ga0137376_108146741	3300012208	Vadose Zone Soil	VPGGAVYHLRADDQVVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0137370_104465531	3300012285	Vadose Zone Soil	WEELAARALAAPSPYHPVPGGPVYHLRVDDQVVLVAEDDLSGPLYDLVTVVLAIGEAPH*
Ga0137371_105258613	3300012356	Vadose Zone Soil	PGGPVYHLRVGERVVLVAGHDLPGPLYDLVAAVLAIGEAPS*
Ga0137360_105268111	3300012361	Vadose Zone Soil	ARALAAPPPYRAVPAGAVYHLRADDQVVLVAEHDLSGPLYDLVTAVLAIGEAPR*
Ga0157338_10884611	3300012515	Arabidopsis Rhizosphere	PYCPVPGGPVYHLRVDDQVVLVAEHELSGPLYDLVTAVLAIGEAPH*
Ga0137413_106767672	3300012924	Vadose Zone Soil	WEELTARALAAPPPYHPVPGEPVYHLRVDDQVVLVAEHELSGPLYDLVTAVLAIGEAPH*
Ga0126375_100945151	3300012948	Tropical Forest Soil	PEGPLYHVQVNEWAVLVADDDLSGPLSDLVTAVLAMGETRL*
Ga0163162_108035301	3300013306	Switchgrass Rhizosphere	RALAAPSPYHPVPGGPVYHLRVDDRVVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0157377_108178101	3300014745	Miscanthus Rhizosphere	DLAARALAAPSPYHPVPGGPVYHLRVDDRVVLVAEHDLSGPLYDLVTAVLAIGEAPH*
Ga0182033_105056942	3300016319	Soil	PYRPVPGDPVYHLRVAEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0182035_114371282	3300016341	Soil	GRWEELIARALAAPPRYRPVPGGLVYHLRVDERVVVVAAHDLSGPLYELVTAVLAIGEAP
Ga0187807_11588601	3300017926	Freshwater Sediment	PPPYRALPGGAVYHLRTDDQVVLVAEHDLSGPLYDLVTAVLAIGEAPH
Ga0187815_104727321	3300018001	Freshwater Sediment	PPPYRAVPGGAVYHLRADDQVVLVAEHDLSGPLYDLVTAVLAIGEAPH
Ga0187804_102019061	3300018006	Freshwater Sediment	VPGGAVYHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH
Ga0187766_113323222	3300018058	Tropical Peatland	VPSPYRPDPGSPIYHVQVDDRVVLVAEHDLSGALSDLVTAVLAMGEPAD
Ga0206356_105313902	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	AASSDTGPWEELLARALAALPPYRPVPGGALCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH
Ga0187768_10267181	3300020150	Tropical Peatland	DLIARALASRPLYRPVPGDPVYHLRVDEQVVVVAEHDLSGSLYDLVTAVLALGEASH
Ga0210407_101478183	3300020579	Soil	ATSGDTGPWDELLARALASLPPYRAVPGEAVCHLRVDDQVALVAGHDLSGPLYDLVTAVLAIGETPY
Ga0210407_110891502	3300020579	Soil	LLARALASLPSYRAVPGGAVYHLRVDDQVVLVAEQDLSGPLYDLVTAVLVIGEPPH
Ga0210403_109283241	3300020580	Soil	ASSDVGPWEELIARALAAPPPYRPIPGGPVYHLRAGERVVLVAGHDLSGPLYELVTAVLALGETPS
Ga0210395_107687002	3300020582	Soil	IYHLRVDDQVVLVAEHELSGPLYDLVTAVLAIGEAPH
Ga0210389_103024921	3300021404	Soil	YRPIPGGPVYHLRAGERVVLVAGHDLSGPLYELVTAVLALGETPS
Ga0207684_111401222	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PWEELLARALAALPPYRAVPGGTVCHLRVGDQVVLVAGQDLSGPLYDLVTAVLAIGEPPH
Ga0207663_100411672	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TSGDTGPWDELLARALASLGPYRAVPGEAVYHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGETPH
Ga0207646_101128372	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VPWPSLPPYRAVPGGAVCHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGETPH
Ga0207694_109814721	3300025924	Corn Rhizosphere	YRAVPGEAVYHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGETPH
Ga0207700_111407771	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	PGGPVYHLRVDDRVVLVAEHDLSGPLYDLVTAVLAIGEAPH
Ga0207664_118763021	3300025929	Agricultural Soil	AASSDTGPWEELLARALAALPPYRAVPGGAVCHLRVDDEVVLVAEPDLSGPLYDLVTAVLAIGEPPH
Ga0207706_108888363	3300025933	Corn Rhizosphere	VYHLRVDEGAVLVAEHDLSGPLSDLVTAVLAIGEAM
Ga0207679_107599861	3300025945	Corn Rhizosphere	PYRPVPGGTVCHLRVDDRVVLVAEHDLSGPLYDLVTAVLAIGEAPH
Ga0207677_105309273	3300026023	Miscanthus Rhizosphere	ALAALPPYRAVPEGTVCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH
Ga0209648_105473593	3300026551	Grasslands Soil	LAVRPPYRPYPGSPVYHVHVDDHVLLVAEHDLTGPLRDLVRAVIAWARRRSGSR
Ga0209466_11161451	3300027646	Tropical Forest Soil	TAGRSDAGRWEELIARALAVRPPYRPAPGGPVYHLRVDNGAVLVAEHDLSGALSDLVTAVLAIGEAM
Ga0209799_10875021	3300027654	Tropical Forest Soil	PPYRPAPGGPVYHLRVDNGAVLVAEHDLSGALSDLVTAVLAIGEAM
Ga0208696_10640281	3300027696	Peatlands Soil	GSPVYHVRVDDRAVLVAEHDLSGPLSDLITAVLAIGEPVD
Ga0209073_103063751	3300027765	Agricultural Soil	TGPWEALLARALAALPPYRAVPGGTVCHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH
Ga0209656_104987222	3300027812	Bog Forest Soil	PGGSVYHLRVDDQVALVAEHDLSGPLNDLVTAVLAIGEASH
Ga0307293_102326461	3300028711	Soil	ARALAVMPPYRPAPGLPVYHLRVDEGAVLVAEHDLSGPLSDLVTAVLAIGEAM
Ga0307323_100431051	3300028787	Soil	LAVLPPYRPAPGGPVYHLRVDEGAVLVAEHDLSGPLSDLVTAVLAIGEAM
Ga0307284_103111021	3300028799	Soil	LWEELIARALAARPPYRPVPGSPVYHLRVDDRAVLVAEHDLSGSLSDLVTAVLAIGEAAA
Ga0307284_104045121	3300028799	Soil	PGGTVCHLRVDDRVVLVAEQDLSGPLYDLVTAVLAIGEPPH
Ga0308309_114489271	3300028906	Soil	GPVYHLRAGERVVLVAGHDLSGPLYELVTAVLALGETPF
Ga0318516_106130281	3300031543	Soil	VLPPYRAVPGEAVYHLRVDDQVAMVAEHDLSGPLYDLVTAVLAIGETPH
Ga0318571_101080603	3300031549	Soil	IYHISADDRVALVAEHDLYGPLLDLVTAVLAVGSEP
Ga0318515_106142612	3300031572	Soil	PGPWEELIARALAAPPPYRAVPEGTVYHLRVDDRVVLVAEDDLSGPLYDLVTAVLAIGETPQ
Ga0318542_103257162	3300031668	Soil	EGAVYHLRVDEQVMLVAEHDLSGPLYDLVTAVLALGEALH
Ga0310686_1093733153	3300031708	Soil	VPWLPRPPYRAVPGGAVYHLRADDQVVLVAEHDLSGPLYDLVTAVLAIGEAPP
Ga0306917_102797962	3300031719	Soil	VYHLRVDEQVMLVAEHDLSGPLYDLVTAVLALGEALH
Ga0307469_100855562	3300031720	Hardwood Forest Soil	PWDELLARALASLGPYRAVPGEAVYHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGETPH
Ga0318501_107904991	3300031736	Soil	PEGTVYHLRVDDRVVLVAEHDLSGPLYDLITAVLAIGETPQ
Ga0318554_103361162	3300031765	Soil	AAGDPGPWEELVARALAAPPAYHAVPEGTVYHLRVDDRVVLVAEHDLSGPLYDLITAVLAIGETPQ
Ga0318509_106244201	3300031768	Soil	PYCPVPGGTVYHLRVDDQVVLVAGHDLSGPLYDLVTAVLAIGEAPD
Ga0318543_100290873	3300031777	Soil	WEELIARALAAPPRYRPVPGGLVYHLRVDERVVVVAEHDLSGPLYELVTAVLAIGEAPS
Ga0318543_101652832	3300031777	Soil	VYHLRVDEQVVLVAEHDLSGPLSDLVTVVLAIGEAVQ
Ga0318566_102122761	3300031779	Soil	AGPWEELLARALAALPPYRAVPGGAVYHLRVDDQVVLVAEHDLSGPLYDLVTAVLAIGDAPQRG
Ga0318547_109980281	3300031781	Soil	PVPGGAVYHLRVDKQVMLVAEHDLSGPLYDLVTAVLALGEALH
Ga0318567_108736121	3300031821	Soil	ALPPYRAVPGGAVYHLRVDDHVVLVAEHDLSGPLYDLVTAVLAIGEAPI
Ga0318511_100657493	3300031845	Soil	WEDLIARALASPPPYRPVPGDPVYHLRVAEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0318527_101819222	3300031859	Soil	LRLSAAVCPWEDLIARALASPPPYRPVPGDPVYHLRVDEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0318527_103249232	3300031859	Soil	PVPGDPVYHLRVDEQVVLVAEDDLSGALSDLVTAVLAVGEAVR
Ga0318527_103958592	3300031859	Soil	WEDLVARALAAPPPYRPIPEGAVYHLRVDEQVMLVAEHDLSGPLYDLVTAVLALGEALH
Ga0306919_105341602	3300031879	Soil	PYWPVPGDPVYHLRVDEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0318522_103025702	3300031894	Soil	VGPWEDLIARALASPPPYRPVPGDPVYHLRVAEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0318520_106986391	3300031897	Soil	TAVSSEAGRWEELIARALAAPPRYRPVPGGLVYHLRVDERVVVVAEHDLSGPLYELVTAVLAIGEAPS
Ga0318520_110047312	3300031897	Soil	YHISADDRVALVAEHDLYGPLLDLVTAVLAVGSEP
Ga0308174_113911922	3300031939	Soil	VPGGAVYHLRVDDQVVLVAERDLSGPLYDLVTAVLAIGEAPP
Ga0310912_113149561	3300031941	Soil	SSDAGPWEELLALALAALPPYRAVPGGAVYHLRVDDHVVLVAEHDLSGPLYDLVTAVLAIGEAPI
Ga0310916_101054701	3300031942	Soil	RPVAGDQVYHLRVDEQVVLVAEQDLSGPLSDLVTVVLAIGEAVQ
Ga0310909_100975353	3300031947	Soil	AAPPPYRPVPGDQVYHLRVDEQVVLVAEHDLSGPLSDLVTVVLAIGEAVQ
Ga0306926_103842862	3300031954	Soil	AAPPPYRPVPGDQVYHLRVDEPVVLVAEHDLSGPLSDLVTVVLAIGEAVQ
Ga0306926_115555192	3300031954	Soil	TARALAAPPPYRPVPGDPVYHLRVDEQVVLVAEYDLSGSLSDLVTAVLAIGEVVR
Ga0318531_100234591	3300031981	Soil	RPVPGDQVYHLRVDEQVVLVAEHDLSGPLSDLVTVVLAIGEEVQ
Ga0318569_100264061	3300032010	Soil	LAARALAAPPPYRPVAGDQVYHLRVDEQVVLVAEQDLSGPLSDLVTVVLAIGEAVQ
Ga0318569_102026252	3300032010	Soil	LIPEELAARALAAPPPYRPVPGDQVYHLRVDEQVVLVAEHDLSGPLSDLVTVVLAIGEAV
Ga0318569_102945752	3300032010	Soil	PVPGDPVYHLRVDEQVVLVAEYDLSGSLSDLVTAVLAIGEVVR
Ga0310911_103959801	3300032035	Soil	ALASPPPYQPVPGDPVYHLRVNEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0318559_104874251	3300032039	Soil	VDTTASSDAGPWEDLIARALAAPPPYRPIPEGAVYHLRIDEQVVLVAEHDLSGSLYDLVTAVLALGDALH
Ga0318505_100568461	3300032060	Soil	VDTAVSSEAGRWEELIARALAAPPRYRPVPGGLVYHLRVDERVVVVAEHDLSGPLYELVTAVLAIGEAPS
Ga0318553_100190104	3300032068	Soil	VYHLRVDERVVVVAEHDLSGPLYELVTAVLAIGEAPS
Ga0311301_105035123	3300032160	Peatlands Soil	LLARALAGPPPYRAVPGGTVYHLRADDQVVLVAEHDLSGPLYDLVTAVLAIGEAPH
Ga0311301_113368982	3300032160	Peatlands Soil	YRAVPGGAVYHLRVDDQVVLVAEQDLSGPLYDLVTAVLAIGEPPH
Ga0311301_130177571	3300032160	Peatlands Soil	TAAHSHAGPWEELIARALAVRPPYRPVPGSPVYHVRVDDRAVLVAEHDLSGPLSDVITAVLAIGEPAD
Ga0307472_1007337331	3300032205	Hardwood Forest Soil	TAVSGDVGPWEELAARALAAPTPYHLVPGGPVYHLRVDDQVVLVAEHDLSGPLYDLVTAVLAIGEAPR
Ga0307472_1007777653	3300032205	Hardwood Forest Soil	AGQWEDLIARALAVMPPYRPAPGGPVYHLRVDEGAVLVAEHDLSGPLSDLVTAVLAIGEA
Ga0306920_1004293412	3300032261	Soil	DQVYHLRVDEPVVLVAEHDLSGPLSDLVTVVLAIGEAVQ
Ga0306920_1009194603	3300032261	Soil	PPPYWPVPGDPVYHLRVDEQVVLVAEHDLSGSLYDLVTAVLALGEVLH
Ga0306920_1044230681	3300032261	Soil	YRAVPGEAVYHLRVDDQVAMVAEHDLSGPLYDLVTAVLAIGETPH
Ga0335070_102113583	3300032829	Soil	VRALASLPPYRAVPGRAVCHLRVDDQVALVAEDDLPGPLYDLVTAVLALGQAPP
Ga0335073_117406451	3300033134	Soil	ASVCHLRVDDQVALVAEHDLSGPLYDLVTAVLAIGEAPH
Ga0318519_101306301	3300033290	Soil	PVPGDQVYHLRVDEQVVLVAEHDLSGPLSDLVTVVLAIGEAVQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences