Metagenome / Metatranscriptome Family F063890

Basic Information
Family ID	F063890
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	39 residues
Representative Sequence	VWMYLISLVVLVGAEFNALLFPRAMLGKELTAVNGPKA
Number of Associated Samples	115
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.45 %
% of genes from short scaffolds (< 2000 bps)	88.37 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Bacteria (91.473 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.729 % of family members)
Environment Ontology (ENVO)	Unclassified (28.682 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.465 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.48% β-sheet: 0.00% Coil/Unstructured: 51.52%
Feature Viewer

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Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00224	PK	57.36
PF02887	PK_C	10.08
PF03992	ABM	2.33
PF01694	Rhomboid	1.55
PF00144	Beta-lactamase	0.78
PF02769	AIRS_C	0.78
PF11645	PDDEXK_5	0.78
PF12695	Abhydrolase_5	0.78
PF01797	Y1_Tnp	0.78
PF04389	Peptidase_M28	0.78
PF07238	PilZ	0.78
PF13432	TPR_16	0.78
PF03631	Virul_fac_BrkB	0.78
PF13620	CarboxypepD_reg	0.78
PF00805	Pentapeptide	0.78
PF00072	Response_reg	0.78
PF14522	Cytochrome_C7	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	67.44
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	1.55
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.78
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.78
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.78
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.78
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.47 %
Unclassified	root	N/A	8.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.47 %
Unclassified	root	N/A	8.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.47 %
Unclassified	root	N/A	8.53 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.13 %
Unclassified	root	N/A	8.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.28 %
Unclassified	root	N/A	8.53 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.28 %
Unclassified	root	N/A	8.53 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.28 %
Unclassified	root	N/A	8.53 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.53 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	7.75 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	2.33 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.55 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.78 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.53 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2.33 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.55 %
Terriglobus albidus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus albidus	0.78 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.78 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10639508	Not Available	616	Open in IMG/M
3300002917\|JGI25616J43925_10376483	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300004080\|Ga0062385_10134362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1254	Open in IMG/M
3300004476\|Ga0068966_1374466	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005177\|Ga0066690_10590168	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	742	Open in IMG/M
3300005437\|Ga0070710_10808976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	670	Open in IMG/M
3300005533\|Ga0070734_10064896	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2180	Open in IMG/M
3300005538\|Ga0070731_10642800	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	705	Open in IMG/M
3300005538\|Ga0070731_10834152	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	611	Open in IMG/M
3300005575\|Ga0066702_10951915	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005587\|Ga0066654_10668866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	579	Open in IMG/M
3300005591\|Ga0070761_10547073	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005873\|Ga0075287_1007193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1321	Open in IMG/M
3300005896\|Ga0075282_1061333	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300005921\|Ga0070766_10294713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1040	Open in IMG/M
3300005995\|Ga0066790_10206526	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300006102\|Ga0075015_101013080	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006176\|Ga0070765_100018139	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	5179	Open in IMG/M
3300006794\|Ga0066658_10280427	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300006914\|Ga0075436_100728080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	736	Open in IMG/M
3300007982\|Ga0102924_1288724	All Organisms → cellular organisms → Bacteria → Acidobacteria	657	Open in IMG/M
3300009038\|Ga0099829_10477438	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300009038\|Ga0099829_10615193	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300009524\|Ga0116225_1071874	All Organisms → cellular organisms → Bacteria → Acidobacteria	1629	Open in IMG/M
3300009524\|Ga0116225_1513948	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300009624\|Ga0116105_1074474	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300009759\|Ga0116101_1030341	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300010046\|Ga0126384_10569559	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300010358\|Ga0126370_12435051	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300010361\|Ga0126378_11327421	Not Available	813	Open in IMG/M
3300010379\|Ga0136449_100238661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus albidus	3393	Open in IMG/M
3300012208\|Ga0137376_11810497	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300012918\|Ga0137396_11137458	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300012986\|Ga0164304_10191809	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300014161\|Ga0181529_10021514	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5301	Open in IMG/M
3300016270\|Ga0182036_11629501	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300017940\|Ga0187853_10448507	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300017948\|Ga0187847_10065679	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300017961\|Ga0187778_10556306	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300017972\|Ga0187781_11118946	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300017988\|Ga0181520_10666663	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300018022\|Ga0187864_10344410	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300018023\|Ga0187889_10111485	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300018035\|Ga0187875_10236441	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300018038\|Ga0187855_10092006	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300018042\|Ga0187871_10384120	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300018085\|Ga0187772_11427425	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300018086\|Ga0187769_11451396	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300018088\|Ga0187771_10609297	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300018088\|Ga0187771_11806911	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300018090\|Ga0187770_11280065	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300018468\|Ga0066662_10154432	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300018468\|Ga0066662_12093002	Not Available	593	Open in IMG/M
3300020579\|Ga0210407_11368955	Not Available	526	Open in IMG/M
3300020580\|Ga0210403_10640999	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300020580\|Ga0210403_11231785	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300020580\|Ga0210403_11284188	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300020581\|Ga0210399_11281355	Not Available	578	Open in IMG/M
3300020582\|Ga0210395_10735973	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300020583\|Ga0210401_10324166	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300021180\|Ga0210396_10278268	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300021401\|Ga0210393_10999713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	677	Open in IMG/M
3300021402\|Ga0210385_11527315	Not Available	510	Open in IMG/M
3300021404\|Ga0210389_10178048	All Organisms → cellular organisms → Bacteria	1655	Open in IMG/M
3300021405\|Ga0210387_11120662	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300021407\|Ga0210383_10226035	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300021433\|Ga0210391_10539125	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300021476\|Ga0187846_10279309	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300021478\|Ga0210402_11651274	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300021479\|Ga0210410_11301341	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300021479\|Ga0210410_11411394	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300021560\|Ga0126371_13798383	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300021861\|Ga0213853_10855090	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300024049\|Ga0233359_1028197	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300024288\|Ga0179589_10576956	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300025898\|Ga0207692_10666647	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300025910\|Ga0207684_10086736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2666	Open in IMG/M
3300026551\|Ga0209648_10244710	Not Available	1333	Open in IMG/M
3300027158\|Ga0208725_1032687	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300027545\|Ga0209008_1111123	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300027576\|Ga0209003_1012658	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300027609\|Ga0209221_1019134	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300027635\|Ga0209625_1097037	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300027727\|Ga0209328_10064920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118	Open in IMG/M
3300027795\|Ga0209139_10347054	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300027853\|Ga0209274_10008945	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4521	Open in IMG/M
3300027854\|Ga0209517_10003976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19717	Open in IMG/M
3300027855\|Ga0209693_10357916	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300027869\|Ga0209579_10035618	All Organisms → cellular organisms → Bacteria → Acidobacteria	2698	Open in IMG/M
3300027884\|Ga0209275_10799026	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300027889\|Ga0209380_10888112	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300027895\|Ga0209624_10000970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	24004	Open in IMG/M
3300027898\|Ga0209067_10071603	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
3300027905\|Ga0209415_10328980	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300027905\|Ga0209415_10495877	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300027905\|Ga0209415_10615148	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300027911\|Ga0209698_11280296	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300028800\|Ga0265338_10578591	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300028906\|Ga0308309_10186650	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300029636\|Ga0222749_10413748	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300029882\|Ga0311368_10277495	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300029951\|Ga0311371_10389394	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300030580\|Ga0311355_10571472	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300030707\|Ga0310038_10311114	Not Available	707	Open in IMG/M
3300030760\|Ga0265762_1112842	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300030862\|Ga0265753_1137797	Not Available	521	Open in IMG/M
3300030878\|Ga0265770_1093749	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031090\|Ga0265760_10004828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3862	Open in IMG/M
3300031090\|Ga0265760_10175194	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300031233\|Ga0302307_10034650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2752	Open in IMG/M
3300031344\|Ga0265316_10336025	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300031708\|Ga0310686_102560316	Not Available	503	Open in IMG/M
3300031715\|Ga0307476_10385902	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300031716\|Ga0310813_10945879	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300031718\|Ga0307474_10044299	All Organisms → cellular organisms → Bacteria → Acidobacteria	3282	Open in IMG/M
3300031823\|Ga0307478_10122538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2039	Open in IMG/M
3300031823\|Ga0307478_10475635	All Organisms → cellular organisms → Bacteria → Acidobacteria	1040	Open in IMG/M
3300031879\|Ga0306919_10179907	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300031890\|Ga0306925_10934914	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300031890\|Ga0306925_11113835	Not Available	797	Open in IMG/M
3300032180\|Ga0307471_102306731	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300032783\|Ga0335079_11204945	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300032829\|Ga0335070_10207015	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300032892\|Ga0335081_10827348	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300032895\|Ga0335074_10116116	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	3482	Open in IMG/M
3300032896\|Ga0335075_10493502	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300033134\|Ga0335073_11172043	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300033134\|Ga0335073_11780646	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300033158\|Ga0335077_10347615	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.67%
Host-Associated	Host-Associated	2.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.72%
Aquatic	Environmental → Aquatic	13.95%
Plants	Host-Associated → Plants	2.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.84%
Freshwater	Environmental → Aquatic → Freshwater	10.85%
Peat	Environmental → Terrestrial → Peat	3.10%
Sediment	Environmental → Aquatic → Sediment	2.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.33%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.78%
Cave	Environmental → Terrestrial → Cave	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.16%
Loam	Environmental → Terrestrial → Soil → Loam	14.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.40%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.20%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.33%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.20%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.43%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.10%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.10%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.33%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.55%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.55%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.78%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.78%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005896	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024049	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P30	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027158	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_106395082	3300001593	Forest Soil	SLVILVGAEFNAMLFPRAFLGKELKEMPAPQTATK*
JGI25616J43925_103764833	3300002917	Grasslands Soil	LVWMYMVSLVVLVGAEFNAMLFPRAMLGKELTAINGPRAAD*
Ga0062385_101343621	3300004080	Bog Forest Soil	LLVWMYLISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTASK*
Ga0068966_13744661	3300004476	Peatlands Soil	ALLVWMYLISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTATK*
Ga0066690_105901681	3300005177	Soil	VWMYLISLVVLVGAEFNALLFPRAMLGKELTAIPATNEA*
Ga0070710_108089761	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	WMYLISVVILIGAEFNAMLFPRALASAKSALNGRELSIG*
Ga0070734_100648961	3300005533	Surface Soil	VWMYMISLVILVGAEFNAMLFPRAMLGKELRDMALPRAVRE*
Ga0070731_106428002	3300005538	Surface Soil	LVWMYMISLVVLVGAEFNALLFPRAMLGKELTAINSTKP*
Ga0070731_108341523	3300005538	Surface Soil	WMYMVSLVVLIGAEFNAMLFPRAMLGKELTAISGPRT*
Ga0066702_109519152	3300005575	Soil	WMYLISLVILIGAEFNAMLFPRSTLGSELTAVGTT*
Ga0066654_106688661	3300005587	Soil	LVWMYLISLVILIGAEFNAMLFPRSTLGSELTAVGTAT*
Ga0070761_105470732	3300005591	Soil	MVSLVVLVGAEFNAMLFPRAMLGKELTAVNGPRAAK*
Ga0075287_10071932	3300005873	Rice Paddy Soil	VWMYLISLVILVGAEFNALLFPRAMLGKELTKIAATE*
Ga0075282_10613332	3300005896	Rice Paddy Soil	LLVWMYMISLVILVGAEFNAMLFPRAWLGKELTAAGGPKEIGN*
Ga0070766_102947132	3300005921	Soil	ALLVWMYMISLIILVCAEFNAMIFPRATLGKELRGMAAPRNTAPVAGP*
Ga0066790_102065263	3300005995	Soil	WMYMISLVILVGAEFNAMLFPRAFLGKELRTMPTPQTAAK*
Ga0075015_1010130801	3300006102	Watersheds	VWMYLISLVVLVGAEFNALLFPRAMLGKELTAVNGPKA*
Ga0070765_1000181391	3300006176	Soil	VWMYLISLVVLVGAEFNALLFPRAMLGKELTAINKA*
Ga0066658_102804272	3300006794	Soil	VCMYMISLVILVGAEFNALLFPRAMLGKELTKIPATE*
Ga0075436_1007280801	3300006914	Populus Rhizosphere	LVWMYMISLVVLVGAEMNAMLFPRAMLGKQLADIPARRVSE*
Ga0102924_12887241	3300007982	Iron-Sulfur Acid Spring	MYLISLVILVRAEFNAMLFPRAFLGKELKEMPAPQTATK*
Ga0099829_104774382	3300009038	Vadose Zone Soil	WMYMISLVILVGAEFNAMLFPRAMLGKELTAINGPKAAD*
Ga0099829_106151931	3300009038	Vadose Zone Soil	IALLVWMYMISLVILVGAEFNAMLFPRTRLGRELTETASSKVTGR*
Ga0116225_10718743	3300009524	Peatlands Soil	MYLISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTATK*
Ga0116225_15139482	3300009524	Peatlands Soil	LVWMYMVSLVVLVGAEFNAMLFPRAMLGKELTAISGPKAAD*
Ga0116105_10744742	3300009624	Peatland	LISLVVLVGAEFNALLFPRAMLGKELTAINDSKP*
Ga0116101_10303411	3300009759	Peatland	AWMYLISLVILVGAEFNALLFPRAMLGKELTAVNSAKA*
Ga0126384_105695593	3300010046	Tropical Forest Soil	LVWMYMISLIILVGAEFNAMLFPRAMLGRELVAMSNAPVKNS*
Ga0126370_124350511	3300010358	Tropical Forest Soil	MYLISLVVLVGAEFNALLFPRAMLGKELTAINSSKS*
Ga0126378_113274211	3300010361	Tropical Forest Soil	LVWMYLISLMVLVGAEFNALLFPRAMLGKELTAINSKP*
Ga0136449_1002386611	3300010379	Peatlands Soil	LLVWMYLISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTTTK*
Ga0137376_118104972	3300012208	Vadose Zone Soil	WMYMISLVILIGAEFNAMLFPRSTLGSELTAVGTAI*
Ga0137396_111374582	3300012918	Vadose Zone Soil	SLVILVGAEFNAMLFPRAMLGKELTAISSPKAAD*
Ga0164304_101918091	3300012986	Soil	LISVVILIGAEFNAMLFPRALASDKSALNGRELSIG*
Ga0181529_100215149	3300014161	Bog	AWMYLISLAILVGAELNALLFPRARLGKELIAVNGSKP*
Ga0182036_116295011	3300016270	Soil	MISLVVLVGAELNAMLFPRAWLGKQLAGIPASRPVPAEKI
Ga0187853_104485072	3300017940	Peatland	VWMYMISLVILIGAEFNAMLFPRATLGKELTAINHPRS
Ga0187847_100656791	3300017948	Peatland	LAWMYLISLVVLVGAEFNALLFPRAMLGKELTAVNSAKA
Ga0187778_105563062	3300017961	Tropical Peatland	MYMISLVILVGAEVNALLFPRAMLGKELKQMPAPKSGTYVS
Ga0187781_111189461	3300017972	Tropical Peatland	MYLISLVVLIGAEFNALLFPRAMLGKELTAINSPKP
Ga0181520_106666632	3300017988	Bog	ALLIWMYLISLVVLVGAEFNAMLFPRAFLGKELKAMPARQTASK
Ga0187864_103444101	3300018022	Peatland	IALLVWMYMISLVILIGAEFNAMLFPRATLGKELTAINHPRS
Ga0187889_101114851	3300018023	Peatland	WMYMISLVILIGAEFNAMLFPRATLGKELTAINHPRS
Ga0187875_102364411	3300018035	Peatland	LLAWMYLISLVVLVGAEFNALLFPRAMLGKELTAVNSAKA
Ga0187855_100920062	3300018038	Peatland	AWMYLISLVVLVGAEFNALLFPRAMLGKELTAVNSAKA
Ga0187871_103841202	3300018042	Peatland	GAAMALLSWMYMSSLVVLVGAEFNALLFPRAMLGKELTAVNATKA
Ga0187772_114274251	3300018085	Tropical Peatland	YMVSLVVLVGAEFNAMIFPRAMLGKELIAINGPKAMATPRS
Ga0187769_114513961	3300018086	Tropical Peatland	LLVWMYLISLVVLIGSEFNALLFPRAMLGKELKAVNNHKAG
Ga0187771_106092972	3300018088	Tropical Peatland	LISLAVLVGAEFNALLFPRAMLGKELKAVNCVKPTAL
Ga0187771_118069112	3300018088	Tropical Peatland	LVWMYLISLVVLVGAEFNALLFPRAMLGKELTAIHAPKALVD
Ga0187770_112800652	3300018090	Tropical Peatland	VWMYMISLVILVGAEFNAMLFPRATLGKELREMAAPKALGR
Ga0066662_101544321	3300018468	Grasslands Soil	WMYMISLVILVGAEFNALLFPRAMLGKELTKIPASE
Ga0066662_120930021	3300018468	Grasslands Soil	GGVALAVWMYMVCLVILVGAEFSAMLFPRAMLGKELTAINGPKAAD
Ga0210407_113689551	3300020579	Soil	GVAVALLVWMYMVSLVILVAAEYNAMLFPRRMLGKELNGMAKPNAEAR
Ga0210403_106409992	3300020580	Soil	LLVWMYMISLVILVGAEFNAMLFPRLLLGKELKEMPAPKAVTR
Ga0210403_112317851	3300020580	Soil	MYLISLVVLVGAEFNALLFPRAMLGKELTAVNDPKP
Ga0210403_112841881	3300020580	Soil	LVILIGAEFNAMLFPRAFLGKELKQAPTPKPAIVAD
Ga0210399_112813551	3300020581	Soil	VWMYLISLVILIGAEFNAMLFQRALVGKELKAMPAPQTATK
Ga0210395_107359733	3300020582	Soil	LLVWMYLISLVVLVGAEFNALLFPRAMLGKELTALNGPKAAN
Ga0210401_103241661	3300020583	Soil	MYLISLVVLIGAEFNALLFPRAMLGKELTALNGPKM
Ga0210396_102782681	3300021180	Soil	YMSSLVILVGAEFNALLFPRAMLGKELTAINTAKPENT
Ga0210393_109997131	3300021401	Soil	AIALLVWMYMVSLVVLVGAEFNAMLFPRTMLGKELTAVSGPRAAN
Ga0210385_115273151	3300021402	Soil	MSLISLVVLVGAEFNALLFPRAMLGKELTQVSARKA
Ga0210389_101780482	3300021404	Soil	MYLISLVVLVGAEFNALLFPRAMLGKELTAINSSKA
Ga0210387_111206621	3300021405	Soil	IALLVWMYMVALVILVGAEFNAMLFPRAMLGKELTAVSGPRAAD
Ga0210383_102260351	3300021407	Soil	ALLVWMYLISLVILVGAEFNAMLFPRAFLGKELKAMPTPQPATK
Ga0210391_105391251	3300021433	Soil	WMYLISLVVLVGAEFNAMLFPRAFLGKELKAMPAPQTASK
Ga0187846_102793092	3300021476	Biofilm	LVWMYLISLVVLVGAEFNALLFPRAMLGKELTAINTSKS
Ga0210402_116512742	3300021478	Soil	VWMYLISLVVLVGAEFNALLFPRAMLGKELTAINSSKA
Ga0210410_113013411	3300021479	Soil	YMVSLVILVGAEFNAMLFPRAMLGKELTAIQGQRAN
Ga0210410_114113941	3300021479	Soil	MYLISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTATK
Ga0126371_137983832	3300021560	Tropical Forest Soil	WMYMVSLVVLVGAEFNAMLFPRAMLGKELQAIGEAAIRRA
Ga0213853_108550901	3300021861	Watersheds	LVWMYLISLVVLVGAEFNAMLFPRAMLGKELTQVTSREP
Ga0233359_10281971	3300024049	Soil	LVVLVGAEFNAMLFPRAMLGKELIAISSVGKEGKAL
Ga0179589_105769561	3300024288	Vadose Zone Soil	YFISLVVLVGAEFNELLFPRAMLGKELTAIPAKIIT
Ga0207692_106666472	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	WMYLISVVILIGAEFNAMLFPRALASAKSALNGRELSIG
Ga0207684_100867361	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	YLISLVVLVGAEFNALLFPRTMLGKELTAINGPKAAS
Ga0209648_102447102	3300026551	Grasslands Soil	LLVWMYMVSLVVLVGAEFNAMLFPRAMLGKELTAVSQR
Ga0208725_10326872	3300027158	Forest Soil	WMYMVSLVVLVGAEFNAMLFPRTMLGKELTAVSGPRAAN
Ga0209008_11111231	3300027545	Forest Soil	VWMYLISLVVLVGAEFNALLFPRAMLGKELTAINKA
Ga0209003_10126581	3300027576	Forest Soil	LLVWMYMVSLIVLIGAEFNAMLFPRAFLGKELSDLGTNANVLAG
Ga0209221_10191341	3300027609	Forest Soil	GWMYMVALVVLVGAEFNAMLFPRAMLGKELTAINGPRAAE
Ga0209625_10970371	3300027635	Forest Soil	WMYMVSLVVLVGAEFNAMLFPRAMLGKELIAISSTGKEGRVL
Ga0209328_100649201	3300027727	Forest Soil	YLISLVVLVGAEFNALLFPRAMLGKELTAINSVKPL
Ga0209139_103470541	3300027795	Bog Forest Soil	YMISLVVLVGAEFNALLFPRAMLGKELTAISGPKL
Ga0209274_100089456	3300027853	Soil	LVWMYMVSLVVLVGAEFNAMLFPRAMLGKELTAVSGPRVTK
Ga0209517_100039761	3300027854	Peatlands Soil	WMYLISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTATK
Ga0209693_103579162	3300027855	Soil	ISLVILVGAEFNAMLFPRAFLGKELKAMPAPQTTSK
Ga0209579_100356184	3300027869	Surface Soil	LVWMYLISLVVLVGAEFNALLFPRAMLGKELTAISSPKL
Ga0209275_107990262	3300027884	Soil	LLVWMYMISLVVLVGAEFNALLFPRAMLGKELTAINSVKA
Ga0209380_108881121	3300027889	Soil	VWMYMVALVILVGAEFNAMLFPRAMLGKELTAVSGPRAAD
Ga0209624_1000097023	3300027895	Forest Soil	VWMYMISLVVLVGAEFNALLFPRAMLGKELTAIHGPKVAHP
Ga0209067_100716031	3300027898	Watersheds	MYFISLVILVGAEFNAMLFPRAMLGKELTAISGPKAAE
Ga0209415_103289802	3300027905	Peatlands Soil	MYLISLVVLVGAEFNALLFPRAMLGKELTAVNDPRP
Ga0209415_104958773	3300027905	Peatlands Soil	WMYLISLVVLVGAEFNALLFPRAMLGKELKELTAINASKTTE
Ga0209415_106151481	3300027905	Peatlands Soil	MYLISLVVLVGAEFNALLFPRAMLGKELTAINDPSGRAAL
Ga0209698_112802962	3300027911	Watersheds	ALVILIGAEFNAMLFPRAFLGKELKEAPSPKPAIVAD
Ga0265338_105785911	3300028800	Rhizosphere	MYLISLVVLVGAEFNALLFPRAMLGKELTAVNGPKL
Ga0308309_101866501	3300028906	Soil	MYLVSLVVLVGAEFNALLFPRAMLGKELVAINTRKA
Ga0222749_104137482	3300029636	Soil	LVWMYMVSLVILVGAEFNAMLFPRAMLGKELIAINSPKV
Ga0311368_102774951	3300029882	Palsa	LVILVGAEFNAMLFPRAMLGKELTAINGPRSRFKGGLG
Ga0311371_103893942	3300029951	Palsa	WMYMISLVVLVGAEFNALLFPRAMLGKELTAINGPKL
Ga0311355_105714721	3300030580	Palsa	LVWMYLISLTVLVGAELNALLFPRAMLGKELTAINCNKAGR
Ga0310038_103111142	3300030707	Peatlands Soil	ISLVVLVGAEFNALLFPRAMLGKELKELTAINASKTTE
Ga0265762_11128422	3300030760	Soil	LIWMYLISLVVLVGAEFNAMLFPRAFLGKELKAMPAPQTTTK
Ga0265753_11377971	3300030862	Soil	ALLVWMYLISLVVLVGAEFSALLFPRAMLGKELTAVSGSGIRPPSA
Ga0265770_10937491	3300030878	Soil	LLVWMYMVSLVILVGAEFNAMLFPRAMLGKELTAVNGPRAAN
Ga0265760_100048281	3300031090	Soil	MYLISLVVLVGAEFNAMLFPRAMLGKELTAVNGPKAAD
Ga0265760_101751941	3300031090	Soil	LISLVILIGAEFNAMLFPRAFLGKELKEMPAPQTATK
Ga0302307_100346501	3300031233	Palsa	LIALVVLVGAEFNAMLFPRAMLGKELNAVNGPKAAD
Ga0265316_103360251	3300031344	Rhizosphere	VWMYLISLMVLVGAEFNALLFPRAMLGKELTAINNIKP
Ga0310686_1025603161	3300031708	Soil	LVILVGAEFNAMLFPRAMLGKELTAINHVKVEARQAN
Ga0307476_103859021	3300031715	Hardwood Forest Soil	WMYLISLVVLVGAEFNALLFPRSMLGKELTAINSLKQ
Ga0310813_109458792	3300031716	Soil	MYMISLIILVGAEFNAMLFPRSQLGRELVAVGEPKTITSD
Ga0307474_100442991	3300031718	Hardwood Forest Soil	VWMYLISLVVLVGAEFNALLFPRSMLGKELTAINSLKQ
Ga0307478_101225383	3300031823	Hardwood Forest Soil	FISLVVLVGAEFNAMIFPRTMLGKELTAISGSKVVE
Ga0307478_104756352	3300031823	Hardwood Forest Soil	YIISLVILIGAEFNAMLFPRAFLGKELKEMPAPQIAAK
Ga0306919_101799071	3300031879	Soil	YIVSLVILIGAEFNAMLFPRAFLGKELKEAPTPKPAIVAD
Ga0306925_109349141	3300031890	Soil	LVILIGAEFNAMLFPRAFLGKELKEAPTPKPAIVAD
Ga0306925_111138351	3300031890	Soil	WMYLISLVVLVGAEFNALLFPRAMLGKELTAINSKP
Ga0307471_1023067311	3300032180	Hardwood Forest Soil	YMISLVILVGAEFNAMLFPRATLGRELKERASPRAEAQ
Ga0335079_112049451	3300032783	Soil	ILVCAEFNAMLFPRATLGKELKQRPAPKISPLARS
Ga0335070_102070153	3300032829	Soil	LLVWMYMISLIVLVGAEFNAMLYPRSQLGRELVAVREPKTAVNG
Ga0335081_108273482	3300032892	Soil	LLVWMYLISLVVLVGAEFNALLFPRAMLGKELTAINSTRNGSA
Ga0335074_101161167	3300032895	Soil	VWMYMISLVVLVGAEFNAMIFPRAMLGKELIAASAPRALTR
Ga0335075_104935021	3300032896	Soil	LVWMYMISLVVLVGAEFNALLFPRAFLGKELTAISANHS
Ga0335073_111720433	3300033134	Soil	LISLMVLVGAEFNALLFPRAMLGKELTAVNSAKVQN
Ga0335073_117806461	3300033134	Soil	LLVWMYMISLVVLVGAEFNALLFPRAFLGKELTAISANHS
Ga0335077_103476151	3300033158	Soil	MVSLIVLVGAEFNAMLFPRAFLGKELSDVGSSANVLAG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063890

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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