Metagenome / Metatranscriptome Family F063870

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063870
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	66 residues
Representative Sequence	MIDLQLLGGILVALAALVGIAIALSVVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDARVLVLR
Number of Associated Samples	88
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.84 %
% of genes near scaffold ends (potentially truncated)	26.36 %
% of genes from short scaffolds (< 2000 bps)	82.95 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.264 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.031 % of family members)
Environment Ontology (ENVO)	Unclassified (26.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.612 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.17% β-sheet: 0.00% Coil/Unstructured: 63.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00266	Aminotran_5	31.78
PF03054	tRNA_Me_trans	25.58
PF00766	ETF_alpha	4.65
PF12833	HTH_18	3.10
PF13191	AAA_16	2.33
PF03721	UDPG_MGDP_dh_N	2.33
PF12900	Pyridox_ox_2	2.33
PF01808	AICARFT_IMPCHas	0.78
PF13426	PAS_9	0.78
PF08327	AHSA1	0.78
PF07702	UTRA	0.78
PF01012	ETF	0.78
PF04020	Phage_holin_4_2	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	25.58
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	5.43
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.33
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.33
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.33
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	2.33
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.33
COG0138	AICAR transformylase/IMP cyclohydrolase PurH	Nucleotide transport and metabolism [F]	0.78
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.78
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
All Organisms	root	All Organisms	45.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
cellular organisms	root	All Organisms → cellular organisms	45.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.65 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	4.65 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.10 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	2.33 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.10 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.10 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.55 %
Carbonactinosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae	1.55 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.10 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.33 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.55 %
Carbonactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.55 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.10 %
Carbonactinospora thermoautotrophica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	1.55 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.55 %
Streptomyces ipomoeae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces ipomoeae	0.78 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.26 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.10 %
Frankia sp. AiPa1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPa1	1.55 %
Carbonactinospora thermoautotrophica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.55 %
Streptomyces ipomoeae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces ipomoeae	0.78 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10100797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1418	Open in IMG/M
3300003505\|JGIcombinedJ51221_10164309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces ipomoeae	898	Open in IMG/M
3300004082\|Ga0062384_100807588	Not Available	656	Open in IMG/M
3300004152\|Ga0062386_100085946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2405	Open in IMG/M
3300005332\|Ga0066388_105027033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	672	Open in IMG/M
3300005332\|Ga0066388_105116570	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300005591\|Ga0070761_10016511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	4102	Open in IMG/M
3300005610\|Ga0070763_10225754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1007	Open in IMG/M
3300005610\|Ga0070763_10336905	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005764\|Ga0066903_108439653	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300006176\|Ga0070765_100718124	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300009520\|Ga0116214_1116050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	988	Open in IMG/M
3300009521\|Ga0116222_1404916	Not Available	593	Open in IMG/M
3300009522\|Ga0116218_1444790	Not Available	578	Open in IMG/M
3300009525\|Ga0116220_10236941	Not Available	795	Open in IMG/M
3300009700\|Ga0116217_10163232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1481	Open in IMG/M
3300010048\|Ga0126373_11546328	Not Available	728	Open in IMG/M
3300010048\|Ga0126373_12159464	Not Available	618	Open in IMG/M
3300010361\|Ga0126378_10603728	Not Available	1212	Open in IMG/M
3300010376\|Ga0126381_100941906	Not Available	1244	Open in IMG/M
3300010379\|Ga0136449_102390288	Not Available	762	Open in IMG/M
3300011080\|Ga0138568_1100506	Not Available	664	Open in IMG/M
3300011087\|Ga0138570_1016195	Not Available	681	Open in IMG/M
3300011120\|Ga0150983_16296497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPa1	640	Open in IMG/M
3300012176\|Ga0153952_1151865	Not Available	512	Open in IMG/M
3300016294\|Ga0182041_10324119	Not Available	1286	Open in IMG/M
3300016341\|Ga0182035_11702053	Not Available	570	Open in IMG/M
3300016357\|Ga0182032_10031866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3229	Open in IMG/M
3300016387\|Ga0182040_11822897	Not Available	521	Open in IMG/M
3300017821\|Ga0187812_1018608	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300017821\|Ga0187812_1056322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1318	Open in IMG/M
3300017821\|Ga0187812_1139174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	784	Open in IMG/M
3300017821\|Ga0187812_1140044	Not Available	781	Open in IMG/M
3300017821\|Ga0187812_1269163	Not Available	542	Open in IMG/M
3300017822\|Ga0187802_10150036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	890	Open in IMG/M
3300017823\|Ga0187818_10123599	Not Available	1122	Open in IMG/M
3300017924\|Ga0187820_1087365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	883	Open in IMG/M
3300017924\|Ga0187820_1090618	Not Available	870	Open in IMG/M
3300017924\|Ga0187820_1275955	Not Available	547	Open in IMG/M
3300017924\|Ga0187820_1296124	Not Available	531	Open in IMG/M
3300017926\|Ga0187807_1095662	Not Available	932	Open in IMG/M
3300017926\|Ga0187807_1122766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	823	Open in IMG/M
3300017926\|Ga0187807_1147572	Not Available	751	Open in IMG/M
3300017927\|Ga0187824_10110408	Not Available	890	Open in IMG/M
3300017928\|Ga0187806_1027777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1665	Open in IMG/M
3300017928\|Ga0187806_1142198	Not Available	788	Open in IMG/M
3300017932\|Ga0187814_10001442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9151	Open in IMG/M
3300017932\|Ga0187814_10084941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1163	Open in IMG/M
3300017932\|Ga0187814_10218738	Not Available	718	Open in IMG/M
3300017933\|Ga0187801_10228963	Not Available	742	Open in IMG/M
3300017937\|Ga0187809_10210972	Not Available	692	Open in IMG/M
3300017942\|Ga0187808_10030740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2218	Open in IMG/M
3300017942\|Ga0187808_10068013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1525	Open in IMG/M
3300017942\|Ga0187808_10301510	Not Available	722	Open in IMG/M
3300017942\|Ga0187808_10312656	Not Available	709	Open in IMG/M
3300017955\|Ga0187817_10730148	Not Available	632	Open in IMG/M
3300017959\|Ga0187779_10070033	Not Available	2071	Open in IMG/M
3300017959\|Ga0187779_10699295	Not Available	685	Open in IMG/M
3300017959\|Ga0187779_10958589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300017961\|Ga0187778_10443047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	856	Open in IMG/M
3300017961\|Ga0187778_10501854	Not Available	805	Open in IMG/M
3300017970\|Ga0187783_10462556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	920	Open in IMG/M
3300017972\|Ga0187781_10003045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	12652	Open in IMG/M
3300017973\|Ga0187780_11338647	Not Available	527	Open in IMG/M
3300017973\|Ga0187780_11399759	Not Available	515	Open in IMG/M
3300017974\|Ga0187777_10378276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPa1	977	Open in IMG/M
3300017974\|Ga0187777_11319357	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300017975\|Ga0187782_10639244	All Organisms → cellular organisms → Bacteria → Terrabacteria group	819	Open in IMG/M
3300018007\|Ga0187805_10115326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1217	Open in IMG/M
3300018086\|Ga0187769_10380731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1060	Open in IMG/M
3300018086\|Ga0187769_10404616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1026	Open in IMG/M
3300018090\|Ga0187770_10784366	Not Available	762	Open in IMG/M
3300020581\|Ga0210399_11126660	Not Available	627	Open in IMG/M
3300021171\|Ga0210405_10188683	Not Available	1634	Open in IMG/M
3300021171\|Ga0210405_11205993	Not Available	560	Open in IMG/M
3300021402\|Ga0210385_10040022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3086	Open in IMG/M
3300021407\|Ga0210383_11177902	Not Available	645	Open in IMG/M
3300021444\|Ga0213878_10378185	Not Available	615	Open in IMG/M
3300021560\|Ga0126371_10380678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1550	Open in IMG/M
3300026998\|Ga0208369_1032670	Not Available	517	Open in IMG/M
3300027096\|Ga0208099_1017444	All Organisms → cellular organisms → Bacteria → Terrabacteria group	993	Open in IMG/M
3300027497\|Ga0208199_1010059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	2230	Open in IMG/M
3300027824\|Ga0209040_10052706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2444	Open in IMG/M
3300027829\|Ga0209773_10267899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300027853\|Ga0209274_10009438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4397	Open in IMG/M
3300028906\|Ga0308309_11263159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	635	Open in IMG/M
3300028906\|Ga0308309_11312344	Not Available	622	Open in IMG/M
3300031543\|Ga0318516_10056320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2151	Open in IMG/M
3300031543\|Ga0318516_10368871	Not Available	828	Open in IMG/M
3300031543\|Ga0318516_10532714	Not Available	673	Open in IMG/M
3300031544\|Ga0318534_10460300	Not Available	728	Open in IMG/M
3300031544\|Ga0318534_10582853	Not Available	636	Open in IMG/M
3300031564\|Ga0318573_10293966	Not Available	869	Open in IMG/M
3300031564\|Ga0318573_10808348	Not Available	504	Open in IMG/M
3300031640\|Ga0318555_10606906	Not Available	592	Open in IMG/M
3300031640\|Ga0318555_10745624	Not Available	529	Open in IMG/M
3300031708\|Ga0310686_108083057	Not Available	904	Open in IMG/M
3300031708\|Ga0310686_108767730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2500	Open in IMG/M
3300031713\|Ga0318496_10144313	Not Available	1297	Open in IMG/M
3300031713\|Ga0318496_10801981	Not Available	519	Open in IMG/M
3300031715\|Ga0307476_10235436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1335	Open in IMG/M
3300031723\|Ga0318493_10801638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300031769\|Ga0318526_10332850	Not Available	621	Open in IMG/M
3300031798\|Ga0318523_10319432	Not Available	774	Open in IMG/M
3300031798\|Ga0318523_10580271	Not Available	552	Open in IMG/M
3300031805\|Ga0318497_10265523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	953	Open in IMG/M
3300031821\|Ga0318567_10639897	Not Available	604	Open in IMG/M
3300031832\|Ga0318499_10003584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4438	Open in IMG/M
3300031890\|Ga0306925_10181512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2267	Open in IMG/M
3300031890\|Ga0306925_11616698	Not Available	629	Open in IMG/M
3300031890\|Ga0306925_12182986	Not Available	516	Open in IMG/M
3300031893\|Ga0318536_10027438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2641	Open in IMG/M
3300031942\|Ga0310916_10825590	Not Available	780	Open in IMG/M
3300031981\|Ga0318531_10277167	Not Available	758	Open in IMG/M
3300032025\|Ga0318507_10490090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300032067\|Ga0318524_10758651	Not Available	513	Open in IMG/M
3300032090\|Ga0318518_10245882	Not Available	918	Open in IMG/M
3300032160\|Ga0311301_12819139	Not Available	530	Open in IMG/M
3300032261\|Ga0306920_103028865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300032892\|Ga0335081_10109404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4079	Open in IMG/M
3300032892\|Ga0335081_10905947	Not Available	1039	Open in IMG/M
3300032895\|Ga0335074_10041599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6385	Open in IMG/M
3300032895\|Ga0335074_10216328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	2308	Open in IMG/M
3300032895\|Ga0335074_10253598	Not Available	2067	Open in IMG/M
3300032895\|Ga0335074_10303813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1820	Open in IMG/M
3300032896\|Ga0335075_10110295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3566	Open in IMG/M
3300032896\|Ga0335075_10297416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1808	Open in IMG/M
3300033289\|Ga0310914_10718836	Not Available	895	Open in IMG/M
3300033290\|Ga0318519_10675602	Not Available	630	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.22%
Host-Associated	Host-Associated	0.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.42%
Aquatic	Environmental → Aquatic	24.81%
Fungi	Host-Associated → Fungi	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.42%
Freshwater	Environmental → Aquatic → Freshwater	24.81%
Mycelium	Host-Associated → Fungi → Mycelium	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.83%
Loam	Environmental → Terrestrial → Soil → Loam	10.85%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.01%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	21.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	17.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.10%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.03%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	21.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	11.63%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.43%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.55%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011087	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012176	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101007973	3300001356	Peatlands Soil	MIDTQLIDGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH*
JGIcombinedJ51221_101643092	3300003505	Forest Soil	MISMQLLGGVLLAVAALVGIAIALSVVILASASASKPGQAPHGGIRRNVPDLPQQPQPDTDRARELVLV*
Ga0062384_1008075882	3300004082	Bog Forest Soil	MIDAQLIEGVLVALAALVGVAIVLSVGMLAAGSVSRSGPAPQGGTRRGVPQQPQSDSDDDRVLVLH*
Ga0062386_1000859462	3300004152	Bog Forest Soil	MINMQLLDGVLVALAALVGLAIALSLVLMAAGSARKPGPEPPGGVRRDLPQQPQSDTDDDRVLVLR*
Ga0066388_1050270332	3300005332	Tropical Forest Soil	MIDMQILGGVLVALAALVGLAVALSAAVLAAGSVSKPGPAPRGGIRPDQPQYPQSDTGDARVLVLR*
Ga0066388_1051165701	3300005332	Tropical Forest Soil	ALAALVGLAIALGVALQAASSVRKPGPAPYGGIRPDQPQHPQSGSDDARVLVLR*
Ga0070761_100165115	3300005591	Soil	GVLVALAALVGVAIVLSAGMLAAGSVSRSGPAPQGGTRRGVPQQPQSDSDDDRVLVLH*
Ga0070763_102257542	3300005610	Soil	MIDAQLIVGVLVALAALVGVAIVLSAGMLAAGSVSRSGPAPQGGTRRAVPQQPQSDSDDDRVLVLH*
Ga0070763_103369052	3300005610	Soil	MINMQLLDGVLVALAALVGLAIALSLVLMAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR*
Ga0066903_1084396532	3300005764	Tropical Forest Soil	MIDMQILGGILVALAALVGLAVALSAAVLAASSVSKPGPAPRGGIRPDQPQYPQSDTGDARVLVLR*
Ga0070765_1007181242	3300006176	Soil	MINTQLLDGVLVAVAALVGLAIALSLVMLAARSVSKPGPAPPGGIRPDLPQQPQSDTDGARVLVLR*
Ga0116214_11160502	3300009520	Peatlands Soil	MIDTQLIEGALVALAVLVGAAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH*
Ga0116222_14049162	3300009521	Peatlands Soil	CILGSVNGVNTIIDRGSLMIDTQLIDGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH*
Ga0116218_14447901	3300009522	Peatlands Soil	MINMQLLDGVLVASAALVGLAIALSLVLLAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR*
Ga0116220_102369412	3300009525	Peatlands Soil	MIDTQLIDGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQS
Ga0116217_101632322	3300009700	Peatlands Soil	MIDTQLIDGVLVALAALFGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH*
Ga0126373_115463281	3300010048	Tropical Forest Soil	MIDMQILGGALVALAALIGLAIALSAVVMAAGSVGKPGPAPQGGIRRDQPEHPLSDTDDDRVLVLH*
Ga0126373_121594642	3300010048	Tropical Forest Soil	MIGDIMIDMQILDGALVALGALVGIAIVLAVVMLAARSVSKPGPAPQGGTRPDLPEPQHPQSDTDDARVFVLMA*
Ga0126378_106037281	3300010361	Tropical Forest Soil	MIDMQILDGALVALGALVGIAVVLTVVMLAARSVSKPGPAPQGGTRPDLPEPQHPQSDTDDARVFVLMA*
Ga0126381_1009419062	3300010376	Tropical Forest Soil	MSGMQILGGVFVALAALVGLAIALGVALQAASSVRKPGPAPYGGIRPDQPQHPQSGSDDARVLVLR*
Ga0136449_1023902881	3300010379	Peatlands Soil	MINMQLLDGVLVALAALVGLAIALSLVLLAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR*
Ga0138568_11005061	3300011080	Peatlands Soil	LIPCILGSVNGVNTIIDRGSLMIDTQLIEGALVALAVLVGAAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH*
Ga0138570_10161951	3300011087	Peatlands Soil	TIIDRGSLMIDTQLIDGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH*
Ga0150983_162964971	3300011120	Forest Soil	MIDMQLIEGALVALAALVGIAIVISVVMLASGSAGRHGPAPHGGTRRDLPQQPQSDSDDDRVLVLH*
Ga0153952_11518651	3300012176	Attine Ant Fungus Gardens	MIDMQLIEGALVALAALAGVAIVIAVVMLASGSAGRHGPAPQGGTRRDLPQQPQSDSDDDRVLVL
Ga0182041_103241191	3300016294	Soil	MSGMQILGGVFVALAALVGLAIALSAVVMAAGSVGKPGPAPQGGIRRDQPEHPLSDTDDDRVLVLH
Ga0182035_117020531	3300016341	Soil	MINMQLFDGVLVALAAVVGLAIALSLVMLVASSVRKHGPDPHGGIRRDLPQQPQSDTDDDRVLVLH
Ga0182032_100318663	3300016357	Soil	MIDMQILGGALVALAAVTGLAIALSLVMLALSSVSKPGPAPQGGIRPEQPQYPQSDTDDTRVLVLH
Ga0182040_118228971	3300016387	Soil	QLSKRGKHDHDRGSQMIDLQLLGGILVALAALVGIAIALSLVMLAAGSVTKPGPAPHGGIRRDLPEPQHPQSDTDDARVLVLH
Ga0187812_10186082	3300017821	Freshwater Sediment	MIDTQLIDGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH
Ga0187812_10563222	3300017821	Freshwater Sediment	MIDMQLIGGILVALAALAGIAIALSVAMLMAGSVTKPGPAPHGGIRRDLPQPQHPQPDTDDARVLVLR
Ga0187812_11391741	3300017821	Freshwater Sediment	MIDMQLLGGILVAVAALVGLAIALSVAMLAAGKVSKPGPAPQGGIRRDLPQHPQSGSDDTRVLVLR
Ga0187812_11400441	3300017821	Freshwater Sediment	MIDLQLLGGILVALAALVGIAIALSVVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDARVLVLR
Ga0187812_12691632	3300017821	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDHDRVLVPR
Ga0187802_101500362	3300017822	Freshwater Sediment	MIDMQLLGGILVAVAALVGLAIALSVAMLAAGKVSKPGRAPQGGIRRDLPQHPQSGSDDTRVLVLR
Ga0187818_101235991	3300017823	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH
Ga0187820_10873652	3300017924	Freshwater Sediment	MHILNGVLVALAAMVGLAIALSVVMLAVSSVSKPGPAPHGGIRPEQPQYPQSDSDDARVLVLS
Ga0187820_10906181	3300017924	Freshwater Sediment	MINMQLLDGVLVALAALVGLAIALSLVLLAAASARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLL
Ga0187820_12759551	3300017924	Freshwater Sediment	MINMQLLDGVLVALAAMVGLGIALSLVLLAAGSARKPGPEPHGGIRRDLPQQPQSDTDDDRVLVLR
Ga0187820_12961242	3300017924	Freshwater Sediment	LGGILVAVAALVGLAIALSVAMLAAGKVSKPGPAPQGGIRRDLPQHPQSGSDDTRVLVLR
Ga0187807_10956621	3300017926	Freshwater Sediment	MIDTQLIEGALVALAALVGVAIVLSVVMLAAASVGRPGPAPHGGIRRDLPQHPQSDSDDDRVLVLR
Ga0187807_11227662	3300017926	Freshwater Sediment	MIDTQLIEGVLVALAALVGGAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDHDRVLVPR
Ga0187807_11475721	3300017926	Freshwater Sediment	MQLLDGVLVALAALVGLAVALSLVLMAAGSARKPGPEPPGGIRRDPPQQPQSDTDDDRVLVLR
Ga0187824_101104081	3300017927	Freshwater Sediment	MIDMQILGGALVALAAVTGLAIALSLVMLALSSVSKPGPAPHGGIRPEQPQYPQSDTDDSRVLVLH
Ga0187806_10277772	3300017928	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDHDRVLVPR
Ga0187806_11421981	3300017928	Freshwater Sediment	MINMQLLDGVLVALAALVGLAIALSLVLMAAGSARRPGPEPPGGIRRDLPQQPQSDTDDDRVLVLQ
Ga0187814_1000144212	3300017932	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSVAMLAASVSRPGPAPHGGTRRDLPQQPQSDTDHDRVLVPR
Ga0187814_100849411	3300017932	Freshwater Sediment	MIDTQLIEGALVALAALVGVAIVLSVVMLAAASVGRPGPAPHGGIRRDLPQQPQSDSDDDRVLVLR
Ga0187814_102187381	3300017932	Freshwater Sediment	MINMQLFDGVLVALAVLVGAAIALSVVMLAVRSVSKPGPAPQGGIRPDLPQQPQSDTDDDRVLVLR
Ga0187801_102289631	3300017933	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSD
Ga0187809_102109722	3300017937	Freshwater Sediment	MTGMQFLDGVLVAVAALVGIAIALAVVMLAAGSVSKPGPAPQGGIRPELPQQPQPDTDDARVLVLH
Ga0187808_100307402	3300017942	Freshwater Sediment	MTGMQFLDGVLVAVAALVGIAIALAVVMLAAGSVSKPGPAPQGGIRPELPQQPQPDTDDARVLMLH
Ga0187808_100680132	3300017942	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH
Ga0187808_103015101	3300017942	Freshwater Sediment	LVALAALVGVAIVLSVVMLAAASVGRPGPAPHGGIRRDLPQHPQSDSDDDRVLVLR
Ga0187808_103126562	3300017942	Freshwater Sediment	MINMQLLDGVLVALAALVGLAIALSLVLLAVGSARKPGPEPPGGIRRNLPQQPQSDTDDDRVLVLH
Ga0187817_107301481	3300017955	Freshwater Sediment	MINMQLLDGVLVALAALAGLAIALSVVMLAAGSVSKAGPAPQGGIRPGLPQQPQSDSDDTRVLVLR
Ga0187779_100700332	3300017959	Tropical Peatland	MINMQLLDGVFVALAVLIGGAVALALVMLAARTAAKPGGPPHGGIRRDLPQQPQSEPDDARTLVGVR
Ga0187779_106992952	3300017959	Tropical Peatland	MIDMQLLGGILVALAALVGVAITLAIVILAAGSVSKPGAAPHGGIRPDRPQQPQSDTDDARVLMLR
Ga0187779_109585891	3300017959	Tropical Peatland	MTDMQILGGVLMALAALAGLAIVLAVALQAASSVRKPGPAPRGGIRPDQPQYPQSGTDDARVLVLR
Ga0187778_104430472	3300017961	Tropical Peatland	MIDTQLIEGVLVALAALVGAAVVLSAVMLAAASVSRPGPAPHGGTRRDLPQQPQSEPDDARTLVGVR
Ga0187778_105018542	3300017961	Tropical Peatland	MINVQLFDGVLVALAVLVGAAIALSVVMLAVRSVSKPGPAPQGGIRPVPPRQPQSDTDDDRVLVLH
Ga0187783_104625562	3300017970	Tropical Peatland	MINMQLIDGVLVALAVLVGAAIALSVVMLAVSSVGKPGPAPQGGIRPELPQEPQSDTDHDRVLVLL
Ga0187781_100030459	3300017972	Tropical Peatland	MINMQLLDGVLVAVAVLMGVAIALSVALLLAAGSVSKPGPAPQGGIRPYVPQRPQSDTDDDRVLVLH
Ga0187780_113386471	3300017973	Tropical Peatland	VINMQLLDGVLVALAVLVGAALALSVVMLAMRSVSKPGPAPQGGIRPDLPQQPQSDTDDDRVLV
Ga0187780_113997592	3300017973	Tropical Peatland	GSQMIDLQLLGGILVALAALVGIAIALSVVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDARVLVLR
Ga0187777_103782761	3300017974	Tropical Peatland	MIDMQLLGGILVALAALVGVAITLAIVILAAGSVSKPGPAPHGGIRPDRPQQPQSDTDDARVLMLR
Ga0187777_113193572	3300017974	Tropical Peatland	NGVNSIDDGDLQMISMQLFEGVLVALAVLVGAAVALSVVMLAVRSVSKPGPAPHGGIRPDLPQQPQSDTDDARVLVLR
Ga0187782_106392441	3300017975	Tropical Peatland	MIHMQLVEGVLLAVAGLVGAATVLSLVMLAASSVTRRGQAPHGGIRRDLPRHPQPEPDTDDARVLVLR
Ga0187805_101153262	3300018007	Freshwater Sediment	MIDTQLIEGVLVALAALVGAAIVLSVVMLAASVSRPGPAPHGGTRPDLPQQPQSDTDHDRVLVLR
Ga0187769_103807312	3300018086	Tropical Peatland	MIDTQLIEGALVALAALVGMAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDHDRVLVLH
Ga0187769_104046161	3300018086	Tropical Peatland	MINMQLLDGVLVALAVLFGAAIALSVVMLAVRSVSKPGPAPQGGIRPDLPQQPQSDTDDARVLVLR
Ga0187770_107843661	3300018090	Tropical Peatland	MINMQLLDGVFVALAVLIGGAVALALVMLAARTAAKPGGPPQGGIRRDLPQQPQSDTDDDRVLVLR
Ga0210399_111266601	3300020581	Soil	MINMQLLDGVLVAMAALVGLAIALSLVLMAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR
Ga0210405_101886831	3300021171	Soil	MINMQLLDGVLVASAALVGLAIALSLVLMAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR
Ga0210405_112059931	3300021171	Soil	MINMQLLDGVLVALAALVGLAIALSFVLMAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR
Ga0210385_100400223	3300021402	Soil	MIDMQLIEGALVALAALVGIAIVISVVMLASGSVGRHGPAPHGGTRRDLPQQPQSDSDDDRVLVLH
Ga0210383_111779021	3300021407	Soil	MINMQLLDGVLVGLAALVGLAIALSLVLMAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR
Ga0213878_103781851	3300021444	Bulk Soil	VNGVNISKDGGLQMIDMHILDGALVALAALVGLAIALCTVMLATASVGRSGPAPRGGSRPDLPLHPQPDTDDARVLVGVR
Ga0126371_103806782	3300021560	Tropical Forest Soil	MSGMQILGGVFVALAALVGLAIALGVALQAASSVRKPGPAPYGGIRPDQPQHPQSGSDDARVLVLR
Ga0208369_10326701	3300026998	Forest Soil	GGVLLAVAALVGIAIALSVVILASASASKPGQAPHGGIRRNVPDLPQQPQPDTDRARELVLV
Ga0208099_10174442	3300027096	Forest Soil	MIDMQLIEGALVALAALVGIAIVISVVMLAAGSVGRHGPAPHGGTRRDLPQQPQSDSDDDRVLVLH
Ga0208199_10100593	3300027497	Peatlands Soil	MIDTQLIEGALVALAVLVGAAIVLSLVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDDDRVLVLH
Ga0209040_100527062	3300027824	Bog Forest Soil	MINMQLLDGVLVALAALVGLAIALSLVLMAAGSARKPGPEPPGGVRRDLPQQPQSDTDDDRVLVLR
Ga0209773_102678992	3300027829	Bog Forest Soil	MIDAQLIEGVLVALAALVGVAIVLSVGMLAAGSVSRSGPAPQGGTRRGVPQQPQSDSDDDRVLVLH
Ga0209274_100094382	3300027853	Soil	MIDAQLIEGVLVALAALVGVAIVLSAGMLAAGSVSRSGPAPQGGTRRGVPQQPQSDSDDDRVLVLH
Ga0308309_112631591	3300028906	Soil	MISMQLLGGVLLAVAALVGIAIALSVVILASASASKPGQAPHGGIRRNVPDLPQQPQPDTDRARELVLV
Ga0308309_113123442	3300028906	Soil	MINTQLLYGVLVAVAALVGLAIALSLVMLAARSVSKPGPAPPGGIRPDLPQQPQSDTDGARVLVLR
Ga0318516_100563203	3300031543	Soil	MIDMQILGGALVALAAVTGLAIALSLVMLALGSVSKPGPAPHGGIRPDQPQYPQSDTDDTRVLVLH
Ga0318516_103688712	3300031543	Soil	MINMQLFDGVLVALAAVVGLAIALSLVMLVASSVRKPGPEPHGGIRRDLPQHPQSDTDDDRVLVLR
Ga0318516_105327142	3300031543	Soil	MIDMQILGGVFVALAALVGLAIALSVALQAASSVSKHGPAPRGGVRPDQPQYPQSGTDDARVLVLR
Ga0318534_104603002	3300031544	Soil	MIDMQLLGGILVALAALVGVAIALSLVMLAAGSVTKPGPAPHGGIRRDLPEPQHPQSDTDDARVLVLH
Ga0318534_105828531	3300031544	Soil	MIDLQLLGGILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDTRVLVLR
Ga0318573_102939663	3300031564	Soil	MSDMQILGGIFVALAALVGLAIALSVALQAASSVRKPGPAPYGGIRPDQPQHPQSGSDDARVLVLR
Ga0318573_108083481	3300031564	Soil	MIDMQILGGALVALAALVGLAIALSAVVMAAGSVGKPGPAPQGGIRRDQPEHPLSDTDDDRVLVLH
Ga0318555_106069061	3300031640	Soil	IDMQLLDGILMALAALVGVAIALSLVMLAAGSVTKPGPAPHGGIRRDLPEPQHPQSDTDDARVLVLH
Ga0318555_107456241	3300031640	Soil	MSDMQILGGIFVALAALVGLAIALSVALQAASSVRRPGPAPKGGIRPDQPQYPQSGTDDARVLVLR
Ga0310686_1080830572	3300031708	Soil	MISMQFVDGVLVALAALVAVAIAFSVVILASGSASKPGQAPHGGIRRNVPDLPEDPQPDNDDARELVLR
Ga0310686_1087677303	3300031708	Soil	MINMQLLDGVLVALAALVGLAIALSLVLMAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLH
Ga0318496_101443132	3300031713	Soil	GNQMIDMQILGGVFVALAALVGLAIALSVALQAASSVSKHGPAPRGGVRPDQPQYPQSGTDDARVLVLR
Ga0318496_108019811	3300031713	Soil	MINMQLLDGVLVALAAVVGLAIALSLVMLVASSVRKHGPDPHGGIRRDLPQQPQSDTDDDRVLVLH
Ga0307476_102354361	3300031715	Hardwood Forest Soil	MISMQFLDDVLVALAALVAVAIAFSVVILASGSASKPGQAPHGGIRRDVPDLPEDPQPYTDDARELVLR
Ga0318493_108016382	3300031723	Soil	MIDMQILGGVFVALAALVGLAIALSVALQAASSVSKHGPAPRGGVRPDQPQYPQSG
Ga0318526_103328501	3300031769	Soil	DLQLLGGILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDTRVLVLR
Ga0318523_103194321	3300031798	Soil	NTINYRGPQMIDMHILGGALVALAAVTGLAIALSLVMLALSSVSKPGPAPQGGIRPEQPQYPQSDTDDTRVLVLH
Ga0318523_105802711	3300031798	Soil	DRGSQMIDLQLLGGILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDTRVLVLR
Ga0318497_102655231	3300031805	Soil	MIDMQILGGVFVALAALVGLAIALSVALQAASSVSKHGPAPRGGVRPDQPQYPQSGTDDA
Ga0318567_106398971	3300031821	Soil	MIDMQLLGGILVALAALVGVAIALSLVMLAAGSVTKPGPAPHGGIRRDLPEPQHPQSDTDDAR
Ga0318499_100035845	3300031832	Soil	LVALAAVTGLAIALSLVMLALGSVSKPGPAPHGGIRPDQPQYPQSDTDDTRVLVLH
Ga0306925_101815122	3300031890	Soil	MIDMHILGGALVALAAVTGLAIALSLVMLALGSVSKPGPAPHGGIRPDQPQYPQSDTDDTRVLVLH
Ga0306925_116166981	3300031890	Soil	ILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDTRVLVLR
Ga0306925_121829862	3300031890	Soil	SVNGVNTIDDRGHQMIDMQILGGALVALAALVGLAIALSAVVMAAGSVGKPGPAPQGGIRRDQPEHPLSDTDDDRVLVLH
Ga0318536_100274381	3300031893	Soil	GVNTINYRGPQMIDMHILGGALVALAAVTGLAIALSLVMLALGSVSKPGPAPHGGIRPDQPQYPQSDTDDTRVLVLH
Ga0310916_108255901	3300031942	Soil	MIDMQILGGVFVALAALVGLAIALGVALQAASSVRKPGPAPYGGIRPDQPQHPQSGSDDARVLVLR
Ga0318531_102771672	3300031981	Soil	HDRGSQMIDLQLLGGILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDTRVLVLR
Ga0318507_104900901	3300032025	Soil	MSDMQILGGIFVALAALVGLAIALSVALQAASSVRRPGPAPKGGIRPDQPQYPQSGTDD
Ga0318524_107586511	3300032067	Soil	MIDLHLLGGILVALVALVGIATALSLVMLAAGSVSKPGPAPHGGIQPDLPQQPQSDSDDARVLVLH
Ga0318518_102458821	3300032090	Soil	SQMIDLHLLGGILVALAALVGIATALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDTRVLVLR
Ga0311301_128191391	3300032160	Peatlands Soil	MINMQLLDGVLVALAALVGLAIALSLVLLAAGSARKPGPEPPGGIRRDLPQQPQSDTDDDRVLVLR
Ga0306920_1030288652	3300032261	Soil	MIDMHILGGALVALAAVTGLAIALSLVMLALSSVSKPGPAPQGGIRPEQPQYPQSDTDDTRVLVLH
Ga0335081_101094044	3300032892	Soil	MISMQLVDGVLVALAVLVGLAIALSVVMMAVGSVGRPGPAPQGGIRPDLPQEPQSDTDHDRVLVLR
Ga0335081_109059472	3300032892	Soil	MIDTQLIEGALVALAALVGVAIVLSVVMLAASVSRPGPAPHGGTRRDLPQQPQSDTDHDRVLVLR
Ga0335074_100415994	3300032895	Soil	MNMQLLDGVLVALAALVGGAILLSLVVLAVGSVSKPGPAPQGGIRPDLPQEPQSDTDHDRELVLL
Ga0335074_102163281	3300032895	Soil	MIDAQLIEGVLVAVGALAGVAVVLAVVMLIAGSVGRHGPAPHGGTRRDLPQQPQSDSDDDRVLVLH
Ga0335074_102535982	3300032895	Soil	MIDVQLIDGVLVALAILVGVAIVLSIAMLAAASVSRPGSAPHGGTRRDLPRQPHSDSDEGRILVLR
Ga0335074_103038132	3300032895	Soil	MIDAQLIEGVLVALAALAGVAIVLAVVMLAAGSVDRHGPAPHGGTRRDLPQHPQSDSDDDRVLVLH
Ga0335075_101102953	3300032896	Soil	MIDGQLIVGVLVALATLVGVATVLSIAMLAAASLSRPGQAPHGGTRPDLPRHPQPDGDEDRVLVLR
Ga0335075_102974162	3300032896	Soil	MIDAQLIGGVLVALAALGGVAIVLAAVMMAAASKTRPGPAPHGGIRRDLPQHPQSDTDDDRVLVLR
Ga0310914_107188362	3300033289	Soil	MIDLQLLGGILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDARVL
Ga0318519_106756022	3300033290	Soil	MIDLQLLGGILVALAALVGIAIALSLVMLAAGSVSKPGPAPHGGIRPELPQHPQSDTDDARVLVLH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063870

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences