Metagenome / Metatranscriptome Family F063866

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063866
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	45 residues
Representative Sequence	MIHLLIAVALGIALAVGGAFAASNALTSVTNGSPTKASLYQYGNR
Number of Associated Samples	94
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.50 %
% of genes near scaffold ends (potentially truncated)	27.13 %
% of genes from short scaffolds (< 2000 bps)	86.82 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.395 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.659 % of family members)
Environment Ontology (ENVO)	Unclassified (40.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.163 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.79% β-sheet: 0.00% Coil/Unstructured: 45.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00535	Glycos_transf_2	63.57
PF13579	Glyco_trans_4_4	2.33
PF13577	SnoaL_4	1.55
PF01593	Amino_oxidase	0.78
PF06863	DUF1254	0.78
PF13439	Glyco_transf_4	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.40 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.40 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.40 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	72.09 %
Unclassified	root	N/A	18.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	72.09 %
Unclassified	root	N/A	18.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	69.77 %
Unclassified	root	N/A	18.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	28.68 %
Unclassified	root	N/A	18.60 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	6.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.65 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.65 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.55 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	0.78 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.65 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.55 %
Thermomonospora curvata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	0.78 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10417729	Not Available	544	Open in IMG/M
3300004633\|Ga0066395_10019609	All Organisms → cellular organisms → Bacteria	2668	Open in IMG/M
3300005172\|Ga0066683_10574517	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005176\|Ga0066679_10272511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1095	Open in IMG/M
3300005180\|Ga0066685_10610641	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005332\|Ga0066388_102477758	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300005332\|Ga0066388_107230327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300005363\|Ga0008090_15883433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300005434\|Ga0070709_10003198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	8792	Open in IMG/M
3300005435\|Ga0070714_100128514	All Organisms → cellular organisms → Bacteria	2262	Open in IMG/M
3300005435\|Ga0070714_101989536	Not Available	567	Open in IMG/M
3300005436\|Ga0070713_100029173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4366	Open in IMG/M
3300005436\|Ga0070713_100952371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	827	Open in IMG/M
3300005436\|Ga0070713_102121874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300005445\|Ga0070708_100026915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4928	Open in IMG/M
3300005533\|Ga0070734_10019145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4579	Open in IMG/M
3300005540\|Ga0066697_10213292	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300005541\|Ga0070733_10337180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	999	Open in IMG/M
3300005598\|Ga0066706_10811142	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005602\|Ga0070762_10438514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	847	Open in IMG/M
3300005764\|Ga0066903_100039430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5543	Open in IMG/M
3300005764\|Ga0066903_100917808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1587	Open in IMG/M
3300005764\|Ga0066903_106551250	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300006028\|Ga0070717_10307357	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300006176\|Ga0070765_101366666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	668	Open in IMG/M
3300006755\|Ga0079222_10268936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1087	Open in IMG/M
3300006755\|Ga0079222_10537306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	870	Open in IMG/M
3300006806\|Ga0079220_10173909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1214	Open in IMG/M
3300006806\|Ga0079220_10659078	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300006871\|Ga0075434_101053229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	827	Open in IMG/M
3300006893\|Ga0073928_10270752	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300009012\|Ga0066710_102874727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	677	Open in IMG/M
3300009090\|Ga0099827_10641243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	917	Open in IMG/M
3300009137\|Ga0066709_100044213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4935	Open in IMG/M
3300010048\|Ga0126373_10790191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1011	Open in IMG/M
3300010321\|Ga0134067_10475209	Not Available	514	Open in IMG/M
3300010358\|Ga0126370_10710907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	884	Open in IMG/M
3300010361\|Ga0126378_10954033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	963	Open in IMG/M
3300010361\|Ga0126378_12251195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
3300010376\|Ga0126381_100727261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1421	Open in IMG/M
3300010376\|Ga0126381_102100948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300010398\|Ga0126383_12217377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	635	Open in IMG/M
3300010398\|Ga0126383_12470186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300010937\|Ga0137776_1714819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2374	Open in IMG/M
3300011270\|Ga0137391_10821837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300012199\|Ga0137383_10438631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	957	Open in IMG/M
3300012210\|Ga0137378_11174848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300012971\|Ga0126369_10961890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	941	Open in IMG/M
3300015241\|Ga0137418_10752902	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300016270\|Ga0182036_10645303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	852	Open in IMG/M
3300016294\|Ga0182041_11379370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300016319\|Ga0182033_11720203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	568	Open in IMG/M
3300016357\|Ga0182032_10104353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2008	Open in IMG/M
3300016371\|Ga0182034_10701135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	861	Open in IMG/M
3300016445\|Ga0182038_10800191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	826	Open in IMG/M
3300016445\|Ga0182038_11615713	Not Available	583	Open in IMG/M
3300018468\|Ga0066662_11474791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300020582\|Ga0210395_10325792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1155	Open in IMG/M
3300020582\|Ga0210395_10852608	Not Available	678	Open in IMG/M
3300021171\|Ga0210405_10065222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2874	Open in IMG/M
3300021401\|Ga0210393_10799161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300021478\|Ga0210402_11996545	Not Available	506	Open in IMG/M
3300021559\|Ga0210409_10168076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2006	Open in IMG/M
3300021560\|Ga0126371_10397428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1519	Open in IMG/M
3300021560\|Ga0126371_10434823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1457	Open in IMG/M
3300021560\|Ga0126371_10555433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1297	Open in IMG/M
3300021560\|Ga0126371_10568945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1282	Open in IMG/M
3300021560\|Ga0126371_11207282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	893	Open in IMG/M
3300021560\|Ga0126371_11365964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	840	Open in IMG/M
3300021560\|Ga0126371_13702492	Not Available	515	Open in IMG/M
3300025922\|Ga0207646_10423738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1201	Open in IMG/M
3300025922\|Ga0207646_11888888	Not Available	509	Open in IMG/M
3300025928\|Ga0207700_10395184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1211	Open in IMG/M
3300025929\|Ga0207664_11887860	Not Available	520	Open in IMG/M
3300027725\|Ga0209178_1301525	Not Available	589	Open in IMG/M
3300027787\|Ga0209074_10135856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	870	Open in IMG/M
3300027787\|Ga0209074_10356886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300027826\|Ga0209060_10007809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6905	Open in IMG/M
3300027867\|Ga0209167_10185662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1103	Open in IMG/M
3300027882\|Ga0209590_10644829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	680	Open in IMG/M
3300027884\|Ga0209275_10397311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300028906\|Ga0308309_11100097	Not Available	687	Open in IMG/M
3300031543\|Ga0318516_10046099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2360	Open in IMG/M
3300031543\|Ga0318516_10052075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2229	Open in IMG/M
3300031543\|Ga0318516_10066879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1986	Open in IMG/M
3300031543\|Ga0318516_10097767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1656	Open in IMG/M
3300031543\|Ga0318516_10161809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1287	Open in IMG/M
3300031543\|Ga0318516_10408377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	782	Open in IMG/M
3300031543\|Ga0318516_10486589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300031543\|Ga0318516_10627806	Not Available	612	Open in IMG/M
3300031544\|Ga0318534_10053326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2267	Open in IMG/M
3300031544\|Ga0318534_10546986	Not Available	660	Open in IMG/M
3300031564\|Ga0318573_10208844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300031564\|Ga0318573_10761112	Not Available	520	Open in IMG/M
3300031681\|Ga0318572_10103200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1611	Open in IMG/M
3300031681\|Ga0318572_10322821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	914	Open in IMG/M
3300031681\|Ga0318572_10630120	Not Available	639	Open in IMG/M
3300031713\|Ga0318496_10332005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	840	Open in IMG/M
3300031719\|Ga0306917_10214795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1462	Open in IMG/M
3300031719\|Ga0306917_11064353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300031720\|Ga0307469_12508880	Not Available	504	Open in IMG/M
3300031723\|Ga0318493_10447938	Not Available	710	Open in IMG/M
3300031724\|Ga0318500_10339556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300031744\|Ga0306918_11205001	Not Available	584	Open in IMG/M
3300031747\|Ga0318502_10166382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1264	Open in IMG/M
3300031748\|Ga0318492_10061929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1774	Open in IMG/M
3300031751\|Ga0318494_10357162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	846	Open in IMG/M
3300031751\|Ga0318494_10841809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300031770\|Ga0318521_10157218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1294	Open in IMG/M
3300031781\|Ga0318547_10097080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1677	Open in IMG/M
3300031782\|Ga0318552_10421051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	681	Open in IMG/M
3300031793\|Ga0318548_10446523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	633	Open in IMG/M
3300031798\|Ga0318523_10332196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300031805\|Ga0318497_10280244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	927	Open in IMG/M
3300031831\|Ga0318564_10418574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300031846\|Ga0318512_10317275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	776	Open in IMG/M
3300031859\|Ga0318527_10306785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	676	Open in IMG/M
3300031860\|Ga0318495_10454587	Not Available	561	Open in IMG/M
3300031894\|Ga0318522_10369791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300031896\|Ga0318551_10663486	Not Available	603	Open in IMG/M
3300031897\|Ga0318520_10837487	Not Available	578	Open in IMG/M
3300031912\|Ga0306921_10883783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1016	Open in IMG/M
3300031954\|Ga0306926_11781872	Not Available	700	Open in IMG/M
3300031959\|Ga0318530_10326751	Not Available	635	Open in IMG/M
3300032060\|Ga0318505_10309031	Not Available	746	Open in IMG/M
3300032063\|Ga0318504_10303912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	755	Open in IMG/M
3300032068\|Ga0318553_10276436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	878	Open in IMG/M
3300032068\|Ga0318553_10390070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	729	Open in IMG/M
3300032805\|Ga0335078_10004675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20270	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.22%
Host-Associated	Host-Associated	0.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.67%
Aquatic	Environmental → Aquatic	1.55%
Plants	Host-Associated → Plants	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.67%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.07%
Loam	Environmental → Terrestrial → Soil → Loam	17.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.20%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.43%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.78%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.78%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.33%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.78%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_104177291	3300003505	Forest Soil	MVHLLIAVAVGIMLAVGAAFATSNALVSVSNGAPSKASLYQYGNR*
Ga0066395_100196092	3300004633	Tropical Forest Soil	MIYLLIAVALGAALAVGGAFAASNTLTSVTNGAPTKASLYQYGNR*
Ga0066683_105745171	3300005172	Soil	MIHLLVAVALGIALAVGGAFAASNTLTSVTNGSPAKASLYQYGNR*
Ga0066679_102725112	3300005176	Soil	MIHLLIAVMLGITLAVGAAFAASGALTSVVNGSPSKASLYQYGNR*
Ga0066685_106106411	3300005180	Soil	MIHLLVAVALGIALAVGGAFAASNTLTSVTNGSPARASLYQYGNR*
Ga0066388_1024777581	3300005332	Tropical Forest Soil	MIHLLIAVALGVALAVGGAFAASSTLTTVTNGAPTKASLYQYGNR*
Ga0066388_1072303271	3300005332	Tropical Forest Soil	MVHLIIAVALGIVLAVGAAVAASGALTGVANGSPTKASLYQYGNR*
Ga0008090_158834331	3300005363	Tropical Rainforest Soil	MIHLIIAVALGIVLAVGGAFAASAALTGVANGTPTNASLYQYGNR*
Ga0070709_100031984	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLLIAVALGVALAVGGAFAASSTLTSVTNGSPAKASLYQYGNR*
Ga0070714_1001285142	3300005435	Agricultural Soil	MVHLLIAVALGIALAVGGAFAASSTLTGVTNGSPAKASLYQYGNR*
Ga0070714_1019895361	3300005435	Agricultural Soil	MIHLLIAVALGIALAAGGAVAATSTLTSVTNGTQTNASLYQYGNR*
Ga0070713_1000291735	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLLIAVALGIALAVGGAFAASSTLTGVTNGSPAKASLYQYGNR*
Ga0070713_1009523712	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLIIAVALGIVLAVGGAFAASGALTGVANGTPTNASLYQYGNR*
Ga0070713_1021218741	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLIIAVALGIVLAVGGAFAASGALTGVANGSPAKASLYQYGNR*
Ga0070708_1000269152	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLLIAVALGIALAVGGAFAASNTLTSVTNGAPAKASLYQYGNR*
Ga0070734_100191453	3300005533	Surface Soil	MIHLLIAVALGIALAAGGAVAATNTLTSVTNGSPTNASLYQYGNR*
Ga0066697_102132923	3300005540	Soil	VMIHLLVAVALGIALAVGGAFAASNTLTSVTNGSPAKASLYQYGNR*
Ga0070733_103371802	3300005541	Surface Soil	MVHLLIAVAVGIMLAVGAAYATSNALVSVSNGAPSKASLYQYGNR*
Ga0066706_108111421	3300005598	Soil	MIHLLIAVMLGIALAVGAAFAASGALTSVVNGSPSKASLYQYGNR*
Ga0070762_104385142	3300005602	Soil	MIHLLIAVVLGIVLAVGAAFAASGALTGVANGSPTKASLYQYGNR*
Ga0066903_1000394303	3300005764	Tropical Forest Soil	MIHLIIAVALGILLAVGGAFAASGALTGVANGTPTNASLYQYGNR*
Ga0066903_1009178082	3300005764	Tropical Forest Soil	MIPLLAAVALGIALAVGGAFAASSTLTGVTNGAPTHASLYQYGNR*
Ga0066903_1065512502	3300005764	Tropical Forest Soil	MIHLLIAVALGVALAVGGAFAASNTLTSVTNGAPTKASLYQYGNR*
Ga0070717_103073572	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIPLLIAVALGVALAVGGAVAASNTLTSVTNGAPAKASLYQYGNR*
Ga0070765_1013666661	3300006176	Soil	MVSLLIAVVVGVALALGAAVATTTALTGVTNGSPSKASLYQYGNR*
Ga0079222_102689362	3300006755	Agricultural Soil	MIHLLIAVALGIALAVGGAFAATNTLTGVTNGAPTKATLYQYGNR*
Ga0079222_105373061	3300006755	Agricultural Soil	RGRSAMIHLLIAVALGVALAVGGAFAASNTLTSVINGAPTHASLYQYGNR*
Ga0079220_101739091	3300006806	Agricultural Soil	MIHLLIAVALGIALAVGGAFAASNTLTGVTNGAPTKATLYQYGNR*
Ga0079220_106590782	3300006806	Agricultural Soil	MIHLLIAVALGVALAVGGAFAASSTLTSVTNGAPAKASLYQYGNR*
Ga0075434_1010532292	3300006871	Populus Rhizosphere	MIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGNR*
Ga0073928_102707522	3300006893	Iron-Sulfur Acid Spring	MVHLLIAVAVGIMLAVGAAYATSNALVGVANGAPSKASLYQYGNR*
Ga0066710_1028747272	3300009012	Grasslands Soil	MIHLLVAVALGIALAVGGAFAASNTLTSVTNGSPAKASLYQYGNR
Ga0099827_106412431	3300009090	Vadose Zone Soil	MIHLLIAVMLGIALAVGAAFAASGALTGVVNGSPSKASLYQYGNR*
Ga0066709_1000442133	3300009137	Grasslands Soil	MIHLLVAVALGIALAVGGAFVASNTLNSMTNGSPAKASLYQYGNR*
Ga0126373_107901912	3300010048	Tropical Forest Soil	MIHLLIAVAVGIALAVGGAVAASNTLSSVANGSPSHASLYQYGNR*
Ga0134067_104752092	3300010321	Grasslands Soil	MIHLLIAVALGIALAVGGAFAASNALTSVTNGSPTKASLYQYGNR*
Ga0126370_107109072	3300010358	Tropical Forest Soil	MIHLLIAVALGVALAVGGAFAASSTLTSVTNGAPTKASLYQYGNR*
Ga0126378_109540332	3300010361	Tropical Forest Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPTHASLYQYGNR*
Ga0126378_122511952	3300010361	Tropical Forest Soil	MIHLLIVVALGIALAVGGAFAATSALTGVTNGAPTHASLYQYGNR*
Ga0126381_1007272613	3300010376	Tropical Forest Soil	AALAVGGAFAASNTLTSVTNGAPTKASLYQYGNR*
Ga0126381_1021009482	3300010376	Tropical Forest Soil	MIHLIIAVALGIVLAVGGAFAVSGTLTGVANGTPTNASLYQYGNR*
Ga0126383_122173772	3300010398	Tropical Forest Soil	MVHLIIAVALGIVIAVGAAFAASGALTDVANGSPTKASVYQYGNR*
Ga0126383_124701862	3300010398	Tropical Forest Soil	LVAVALGVALAVGGAFAASSTLTGVTNGAPTHASLYQYGNR*
Ga0137776_17148192	3300010937	Sediment	MIHLLIAVALGIALAVGGAVAATNTLTSVTNGSPAKASLYQYGNR*
Ga0137391_108218372	3300011270	Vadose Zone Soil	MIHLLIAVALGIVLAVGAAFAASGALTGVANGSPSKASLYQYGNR*
Ga0137383_104386312	3300012199	Vadose Zone Soil	MIYLLIAVVLGITLAIGAAFAASGTLTGVVNGSPSKASLYQYGNR*
Ga0137378_111748482	3300012210	Vadose Zone Soil	MIHLLIAVALGIVLAVGAAFATSGALTGVANGSPSKASLYQYGNR*
Ga0126369_109618902	3300012971	Tropical Forest Soil	MVHMIIAVASGIVLAVGAAVAASGALTGVANGSPTKASLYQYGNR*
Ga0137418_107529023	3300015241	Vadose Zone Soil	MIHLIIAVALGIALAVGAAFATSGALTGVANGSPAKASLYQYGNR*
Ga0182036_106453031	3300016270	Soil	MIPLLVAVALGVALAVGGAFAASNTLTGVTNGAPTHASLYQYGN
Ga0182041_113793702	3300016294	Soil	PYRGRSAMIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGTR
Ga0182033_117202032	3300016319	Soil	MVHLIIAVALGIVLAVGAAFVASGALTGVSDGSPTKA
Ga0182032_101043531	3300016357	Soil	MIHLLIAVAVGVALAVGGAFAASSTLTSVTNGAPTHGSLYQYGNR
Ga0182034_107011352	3300016371	Soil	SPYRGRSAMIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0182038_108001912	3300016445	Soil	AVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0182038_116157132	3300016445	Soil	MIPTLIAVALGVALAVGGAVAATNTLTGVTNGAPTHSSLYQYGNR
Ga0066662_114747911	3300018468	Grasslands Soil	MIHLLIAVMLGIALAVGAAFAASGALTSVVNGSPSKASLYQYGNR
Ga0210395_103257922	3300020582	Soil	MVHLLIAVAVGIMLAVGAAYATSNALVGVANGAPSKASLYQYGNR
Ga0210395_108526081	3300020582	Soil	MIHLLIAVAVGIMLAVGAAYATSNALVGVANGAPSKASLYQYGNR
Ga0210405_100652222	3300021171	Soil	MVHLLIAVAVGIMLAVGAAFATSNALVSVSNGAPSKASLYQYGNR
Ga0210393_107991612	3300021401	Soil	LIAVVLGIVLAVGAAFAASGALTGVANGSPTKASLYQYGNR
Ga0210402_119965452	3300021478	Soil	MIHLLIAVALGIALAVGGAFAASNTLTGVTNGAPTKATLYQYGNR
Ga0210409_101680762	3300021559	Soil	MVSLLIAVVVGVALALGAAVATTSALTGVTNGSPSKASLYQYGNR
Ga0126371_103974282	3300021560	Tropical Forest Soil	MIYLLIAVALGAALAVGGAFAASNTLTSVTNGAPTKASLYQYGNR
Ga0126371_104348232	3300021560	Tropical Forest Soil	MIHLIIAVALGIVLAVGGAFAVSGALTGVANGTPTNASLYQYGNR
Ga0126371_105554333	3300021560	Tropical Forest Soil	MIHLLIAVALGVALAVGGAFAASNTLTSVTNGAPTKASLYQYGNR
Ga0126371_105689452	3300021560	Tropical Forest Soil	MIHLLIAVAVGIALAVGGAVAASNTLTSVTNGAPANASLYQYGNR
Ga0126371_112072821	3300021560	Tropical Forest Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPTHASLYQYGNR
Ga0126371_113659641	3300021560	Tropical Forest Soil	MIHLIIAVALGILLAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0126371_137024921	3300021560	Tropical Forest Soil	MIHLIIAVALGIVLAVGGAFAATNALTGVANGTPTKASLYQYGNR
Ga0207646_104237382	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLLIAVALGIALAVGGAFAASNTLTSVTNGAPAKASLYQYGNR
Ga0207646_118888881	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MIHLIIAVALGIVLAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0207700_103951841	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VALGIVLAVGGAFAASGALTGVANGSPAKASLYQYGNR
Ga0207664_118878602	3300025929	Agricultural Soil	MIHLLIAVALGIALAAGGAVAATSTLTSVTNGTQTNASLYQYGNR
Ga0209178_13015251	3300027725	Agricultural Soil	MIHLLIAVALGVALAVGGAFAASNTLTSVINGAPTHASLYQYGNR
Ga0209074_101358561	3300027787	Agricultural Soil	IHLLIAVALGVALAVGGAFAASNTLTSVINGAPTHASLYQYGNR
Ga0209074_103568862	3300027787	Agricultural Soil	VALGIALAVGGAFAASNTLTGVTNGAPTKATLYQYGNR
Ga0209060_100078092	3300027826	Surface Soil	MIHLLIAVALGIALAAGGAVAATNTLTSVTNGSPTNASLYQYGNR
Ga0209167_101856622	3300027867	Surface Soil	MVHLLIAVAVGIMLAVGAAYATSNALVSVSNGAPSKASLYQYGNR
Ga0209590_106448291	3300027882	Vadose Zone Soil	MIHLLIAVMLGIALAVGAAFAASGALTGVVNGSPSKASLYQYGNR
Ga0209275_103973111	3300027884	Soil	MIHLLIAVVLGIVLAVGAAVAASGALTGVANGSPTKASLYQYGNR
Ga0308309_111000972	3300028906	Soil	MVSLLIAVVVGVALALGAAVATTTALTGVTNGSPSKASLYQYGNR
Ga0318516_100460993	3300031543	Soil	MVHLLIAVALGVVLAVGAAVAASGALTGVADGAPSSGSLYQYGHR
Ga0318516_100520753	3300031543	Soil	MIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0318516_100668792	3300031543	Soil	MVHLIIAVALGILLAIGGAFAATNALTGVANGSPTKASLYQYGNR
Ga0318516_100977672	3300031543	Soil	MIHLLIAVALGVALAVGGAFAASNTLTSVVNGAPTKASLYQYGNR
Ga0318516_101618092	3300031543	Soil	MIHLLIAVAVGIALAVGGAVAASNTLSSVANGSPSHASLYQYGNR
Ga0318516_104083772	3300031543	Soil	MVHLIIAVALGIVLAVGAAFVASGALTGVSDGSPTKASLYQYGNR
Ga0318516_104865891	3300031543	Soil	MIPLLIAVALGVALAVGGAFAASNTLTGVTNGAPTHASLYQYGNR
Ga0318516_106278062	3300031543	Soil	MIHLIIAVALGIVLAVGGAFAASSALTGVANGTPTNASLYQYGNR
Ga0318534_100533262	3300031544	Soil	MIHLLIAVALGVALAVGGAFAASNTLTSVINGAPTKASLYQYGNR
Ga0318534_105469862	3300031544	Soil	MIPLLIAVALGVALAVGGAVAATNTLTSVTNGAPTHASLYQY
Ga0318573_102088441	3300031564	Soil	MIHLIIAVALGILLAVGGAFAATNALTGVANGSPTKASLYQYGNR
Ga0318573_107611122	3300031564	Soil	MIPLLVAVALGVALAVGGAFAASSTLTYVTNGAPTHSSLYQYGNR
Ga0318572_101032002	3300031681	Soil	MIHLIIAVVLGIVLAVGGAFAASSALTGVANGTPTNASLYQYGNR
Ga0318572_103228212	3300031681	Soil	LLAREERLMIHLLIAVAVGIALAVGGAVAASNTLSSVANGSPSHASLYQYGNR
Ga0318572_106301202	3300031681	Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPTQASLY
Ga0318496_103320052	3300031713	Soil	YRGRSVMVHLLIAVALGVVLAVGAAVAARGVLTGVADGTPSKASLYQYGNR
Ga0306917_102147951	3300031719	Soil	MIPLLVAVALGVALAVGGAVAATNTLTSVTNGAPTHASLYQYGNR
Ga0306917_110643532	3300031719	Soil	ALGIVLAVGGAFAASSALTGVANGTPTNASLYQYGNR
Ga0307469_125088801	3300031720	Hardwood Forest Soil	MIHLLIAVALGIALAVGGAFAASSTLTSVTNGSPAKASLYQYGNR
Ga0318493_104479382	3300031723	Soil	MVHLLIAVALGVVLAVGAAVAARGVLTGVADGTPSKASLYQYGNR
Ga0318500_103395562	3300031724	Soil	MIHLIIAVALGIVIAVGGAFAASSALTGVANGTPTNASLYQYGNR
Ga0306918_112050011	3300031744	Soil	MIHLLIAVALGVALAVGGAFAASNTLTSVINGAPTKASL
Ga0318502_101663822	3300031747	Soil	MIHLLIAVAVGIALAVGGAVAASNTLSSVANGSSSHASLYQYGNR
Ga0318492_100619292	3300031748	Soil	MVHLLIAVALGVVLAVGAAVAASGALTGVADGAPSSG
Ga0318494_103571622	3300031751	Soil	MIPLLVAVALGVALAVGGAFAASNTLTGVTNGAPTHASLYQYGNR
Ga0318494_108418092	3300031751	Soil	SSHWPVLLAREERLMIHLLIAVAVGIALAVGGAVAASNTLSSVANGSPSHASLYQYGNR
Ga0318521_101572182	3300031770	Soil	MVHLIIAVALGIVLAVGAAFVASGALTGGSDGSPTKASLYQYGNR
Ga0318547_100970801	3300031781	Soil	RSAMIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0318552_104210511	3300031782	Soil	MIHLIIAVALGIVLAVGGAFAVSGALTGVANGTPTNASLYQYGN
Ga0318548_104465232	3300031793	Soil	MVHLIIAVALGIVLAVGAAFVASGALTGVSDGSPTKASLYQ
Ga0318523_103321961	3300031798	Soil	RPCVPYRGRSAMIHLIIAVALGIVLAVGGAFAASSALTGVANGTPTNASLYQYGNR
Ga0318497_102802442	3300031805	Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGPPTHASLYQYGNR
Ga0318564_104185741	3300031831	Soil	MSPYRGRSAMIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGNR
Ga0318512_103172751	3300031846	Soil	MIHLIIAVALGILLAVGGAFAATNALTGVANGSPTKASL
Ga0318527_103067851	3300031859	Soil	MIHLLIAVAVGIALAVGGAVAASNTLSSVANGSPSHASLYQ
Ga0318495_104545872	3300031860	Soil	MIHLLIAVAVGIALAVGGAVAASNTLSSVANGSPSHASLYQYGN
Ga0318522_103697912	3300031894	Soil	GVPYRGRSAMIHLIIAVALGILLAVGGAFAATNALTGVANGSPTKASLYQYGNR
Ga0318551_106634861	3300031896	Soil	MIPLLIAVALGVALAVGGAVAATNTLTSVTNGAPTHASLYQYGNR
Ga0318520_108374871	3300031897	Soil	MVHLLIAVALGVVLAVGAAVAARGVLTGVADGTPSKASLYQ
Ga0306921_108837831	3300031912	Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPIHSSLYQYGNR
Ga0306926_117818722	3300031954	Soil	MIHLLIAVAVGVALAVGGAFAASSTLTGVTNGAPTHSSLYQYGNR
Ga0318530_103267512	3300031959	Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPTHSSLYQYGNR
Ga0318505_103090312	3300032060	Soil	MIHLIIAVALGILLAIGGAFAATNALTGVANGSPTKASLYQYGNR
Ga0318504_103039122	3300032063	Soil	MIHLIIAVALGIALAVGGAFAASGALTGVANGTPTNASLYQYGN
Ga0318553_102764361	3300032068	Soil	PYRGRSAMIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPIHSSLYQYGNR
Ga0318553_103900702	3300032068	Soil	MIPLLVAVALGVALAVGGAFAASSTLTGVTNGAPTHSSL
Ga0335078_100046754	3300032805	Soil	MIPLIAAIAVGIALAVGGTLAVSGALSGAANGSPSNASLYQYGNR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063866

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences