Metagenome Family F063573

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063573
Family Type	Metagenome
Number of Sequences	129
Average Sequence Length	43 residues
Representative Sequence	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQSDPRP
Number of Associated Samples	101
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.84 %
% of genes near scaffold ends (potentially truncated)	26.36 %
% of genes from short scaffolds (< 2000 bps)	86.05 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.845 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.155 % of family members)
Environment Ontology (ENVO)	Unclassified (46.512 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.116 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.11% β-sheet: 0.00% Coil/Unstructured: 47.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF09527	ATPase_gene1	33.33
PF12802	MarR_2	21.71
PF00654	Voltage_CLC	9.30
PF05559	DUF763	9.30
PF00254	FKBP_C	7.75
PF01047	MarR	3.10
PF05545	FixQ	0.78
PF08309	LVIVD	0.78
PF01645	Glu_synthase	0.78
PF10604	Polyketide_cyc2	0.78
PF13441	Gly-zipper_YMGG	0.78
PF00823	PPE	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	9.30
COG1415	Uncharacterized conserved protein, DUF763 domain	Function unknown [S]	9.30
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.78
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.78
COG4736	Cbb3-type cytochrome oxidase, subunit 3	Energy production and conversion [C]	0.78
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.78
COG5651	PPE-repeat protein	Function unknown [S]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.84 %
Unclassified	root	N/A	20.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.84 %
Unclassified	root	N/A	20.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.84 %
Unclassified	root	N/A	20.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.05 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.05 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.05 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.43 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.55 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.43 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.55 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.05 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5.43 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.55 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.78 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.78 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.78 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.05 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	5.43 %
Pelagibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	0.78 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.78 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.78 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.78 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.05 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	5.43 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.78 %
Sphingomonas crusticola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	0.78 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.78 %
Pelagibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	0.78 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101131383	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300000956\|JGI10216J12902_120619312	Not Available	525	Open in IMG/M
3300004114\|Ga0062593_100431340	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300004780\|Ga0062378_10231081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300005093\|Ga0062594_100622128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	952	Open in IMG/M
3300005183\|Ga0068993_10056064	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300005328\|Ga0070676_10237661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1210	Open in IMG/M
3300005331\|Ga0070670_100144537	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300005333\|Ga0070677_10549314	Not Available	633	Open in IMG/M
3300005343\|Ga0070687_101411913	Not Available	521	Open in IMG/M
3300005344\|Ga0070661_101358684	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005354\|Ga0070675_101044190	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005440\|Ga0070705_101694893	Not Available	534	Open in IMG/M
3300005441\|Ga0070700_101602285	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	556	Open in IMG/M
3300005457\|Ga0070662_100805238	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005457\|Ga0070662_101972749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300005459\|Ga0068867_100033156	All Organisms → cellular organisms → Bacteria	3738	Open in IMG/M
3300005466\|Ga0070685_11254028	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	565	Open in IMG/M
3300005536\|Ga0070697_102144939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300005543\|Ga0070672_101574959	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005549\|Ga0070704_102176131	Not Available	516	Open in IMG/M
3300005616\|Ga0068852_100737119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	997	Open in IMG/M
3300005617\|Ga0068859_100190787	All Organisms → cellular organisms → Bacteria → Proteobacteria	2134	Open in IMG/M
3300005719\|Ga0068861_102670942	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005840\|Ga0068870_10146974	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300005841\|Ga0068863_100172626	All Organisms → cellular organisms → Bacteria → Proteobacteria	2074	Open in IMG/M
3300005841\|Ga0068863_101085130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	805	Open in IMG/M
3300005843\|Ga0068860_102372860	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005844\|Ga0068862_100750067	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300006046\|Ga0066652_100685421	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	974	Open in IMG/M
3300006755\|Ga0079222_11359025	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300006844\|Ga0075428_100958999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300006844\|Ga0075428_101070817	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300006880\|Ga0075429_100764660	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300006894\|Ga0079215_11353741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300007004\|Ga0079218_10000043	All Organisms → cellular organisms → Bacteria	23269	Open in IMG/M
3300007076\|Ga0075435_101926083	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009094\|Ga0111539_10553251	All Organisms → cellular organisms → Bacteria → Proteobacteria	1340	Open in IMG/M
3300009094\|Ga0111539_13377530	Not Available	513	Open in IMG/M
3300009098\|Ga0105245_12330055	Not Available	589	Open in IMG/M
3300009100\|Ga0075418_12616513	Not Available	551	Open in IMG/M
3300009156\|Ga0111538_11596862	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300009176\|Ga0105242_12408152	Not Available	574	Open in IMG/M
3300009610\|Ga0105340_1040124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1822	Open in IMG/M
3300009678\|Ga0105252_10096496	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300010045\|Ga0126311_11564971	Not Available	554	Open in IMG/M
3300010403\|Ga0134123_11397664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	740	Open in IMG/M
3300011415\|Ga0137325_1041663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	961	Open in IMG/M
3300012160\|Ga0137349_1057067	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300012212\|Ga0150985_123211546	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300012469\|Ga0150984_120981381	Not Available	650	Open in IMG/M
3300012893\|Ga0157284_10127177	Not Available	698	Open in IMG/M
3300012895\|Ga0157309_10317277	Not Available	531	Open in IMG/M
3300012899\|Ga0157299_10174952	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012909\|Ga0157290_10319503	Not Available	579	Open in IMG/M
3300013308\|Ga0157375_13162663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	549	Open in IMG/M
3300014326\|Ga0157380_10218974	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300014326\|Ga0157380_11138465	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300014326\|Ga0157380_12412965	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300014326\|Ga0157380_12506775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300014745\|Ga0157377_11679809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300014969\|Ga0157376_10524989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1168	Open in IMG/M
3300015371\|Ga0132258_10060399	All Organisms → cellular organisms → Bacteria	8727	Open in IMG/M
3300015371\|Ga0132258_10339165	All Organisms → cellular organisms → Bacteria	3713	Open in IMG/M
3300017792\|Ga0163161_12005330	Not Available	515	Open in IMG/M
3300017965\|Ga0190266_10006799	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300017965\|Ga0190266_10352564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300018083\|Ga0184628_10000774	All Organisms → cellular organisms → Bacteria	16431	Open in IMG/M
3300018469\|Ga0190270_10454789	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300018469\|Ga0190270_10870002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	916	Open in IMG/M
3300018469\|Ga0190270_11187331	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300018476\|Ga0190274_10059655	All Organisms → cellular organisms → Bacteria → Proteobacteria	2815	Open in IMG/M
3300018476\|Ga0190274_10116051	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300018476\|Ga0190274_10696194	All Organisms → cellular organisms → Bacteria → Proteobacteria	1060	Open in IMG/M
3300018476\|Ga0190274_11350637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300018476\|Ga0190274_11463979	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300018476\|Ga0190274_11899978	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300018481\|Ga0190271_10815722	All Organisms → cellular organisms → Bacteria → Proteobacteria	1057	Open in IMG/M
3300018481\|Ga0190271_13022612	Not Available	564	Open in IMG/M
3300018481\|Ga0190271_13062496	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300019356\|Ga0173481_10210140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300020027\|Ga0193752_1116355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1078	Open in IMG/M
3300020034\|Ga0193753_10004448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	9988	Open in IMG/M
3300022756\|Ga0222622_11075205	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300022915\|Ga0247790_10007966	All Organisms → cellular organisms → Bacteria	2107	Open in IMG/M
3300025315\|Ga0207697_10548149	Not Available	509	Open in IMG/M
3300025321\|Ga0207656_10021747	All Organisms → cellular organisms → Bacteria	2566	Open in IMG/M
3300025893\|Ga0207682_10344890	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300025893\|Ga0207682_10437460	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300025900\|Ga0207710_10186653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	1019	Open in IMG/M
3300025903\|Ga0207680_10902933	Not Available	633	Open in IMG/M
3300025903\|Ga0207680_11099969	Not Available	568	Open in IMG/M
3300025908\|Ga0207643_10577968	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300025918\|Ga0207662_10292844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	1080	Open in IMG/M
3300025920\|Ga0207649_11444919	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300025923\|Ga0207681_11789034	Not Available	513	Open in IMG/M
3300025924\|Ga0207694_11881281	Not Available	502	Open in IMG/M
3300025925\|Ga0207650_10025607	All Organisms → cellular organisms → Bacteria	4204	Open in IMG/M
3300025925\|Ga0207650_10685731	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300025930\|Ga0207701_11686506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300025937\|Ga0207669_11110249	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300025940\|Ga0207691_11128181	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300025941\|Ga0207711_10158046	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300025941\|Ga0207711_11537615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	609	Open in IMG/M
3300025945\|Ga0207679_11345403	Not Available	655	Open in IMG/M
3300026089\|Ga0207648_12197132	Not Available	513	Open in IMG/M
3300026118\|Ga0207675_100970155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	868	Open in IMG/M
3300027533\|Ga0208185_1059119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300027639\|Ga0209387_1177763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300027886\|Ga0209486_10001951	All Organisms → cellular organisms → Bacteria	8846	Open in IMG/M
3300028380\|Ga0268265_10159253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1915	Open in IMG/M
3300028380\|Ga0268265_12336779	Not Available	541	Open in IMG/M
3300028381\|Ga0268264_10933214	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300028589\|Ga0247818_11370208	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300028803\|Ga0307281_10172792	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300028812\|Ga0247825_10222285	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300028812\|Ga0247825_10520700	Not Available	847	Open in IMG/M
3300028812\|Ga0247825_10891182	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300031455\|Ga0307505_10003169	All Organisms → cellular organisms → Bacteria	10506	Open in IMG/M
3300031538\|Ga0310888_10684215	Not Available	628	Open in IMG/M
3300031548\|Ga0307408_102361777	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031847\|Ga0310907_10261210	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300031892\|Ga0310893_10184527	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300031908\|Ga0310900_10405374	All Organisms → cellular organisms → Bacteria → Proteobacteria	1036	Open in IMG/M
3300031908\|Ga0310900_11855142	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031944\|Ga0310884_10284826	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300032144\|Ga0315910_10208342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1469	Open in IMG/M
3300032144\|Ga0315910_10474752	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300032157\|Ga0315912_10442755	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.16%
Host-Associated	Host-Associated	48.84%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	48.84%
Terrestrial	Environmental → Terrestrial	44.19%
Aquatic	Environmental → Aquatic	6.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.28%
Sediment	Environmental → Aquatic → Sediment	5.43%
Freshwater	Environmental → Aquatic → Freshwater	0.78%
Marine	Environmental → Aquatic → Marine	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.05%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.43%
Loam	Environmental → Terrestrial → Soil → Loam	5.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.78%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.20%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.10%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.33%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.55%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.78%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004780	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1011313832	3300000956	Soil	MFETFAALTTISMIVIFIVLYRIELTGRREDAEKAETQRDLRP*
JGI10216J12902_1206193122	3300000956	Soil	MFETIAALSTISMVVIFIVLYQIDRKGRQEDAEKAAGPTDPRT*
Ga0062593_1004313403	3300004114	Soil	MFETFAALSTISMVVIFIVLYRIDRRGREEEAGKTAHTPDSHV*
Ga0062378_102310812	3300004780	Wetland Sediment	MFETFAALSTISMVVIFVVLYRIDRAGRREEAEKSDTALPRS*
Ga0062594_1006221282	3300005093	Soil	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQRDPRP*
Ga0068993_100560643	3300005183	Natural And Restored Wetlands	TIYRKGTRTMFETFAVISTISMIVIFIVLYRIDQAGRREEAGKAEGKGESRP*
Ga0070676_102376613	3300005328	Miscanthus Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSRI*
Ga0070670_1001445372	3300005331	Switchgrass Rhizosphere	MFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRP*
Ga0070677_105493142	3300005333	Miscanthus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGQAEGQSDPRP*
Ga0070687_1014119132	3300005343	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYRIDQAGRREEAAKAEGQRDPRP*
Ga0070661_1013586841	3300005344	Corn Rhizosphere	MFETFAVVSTISMIVIFIVLYRIDQAGRREEAAKAEGQSDPRP*
Ga0070675_1010441901	3300005354	Miscanthus Rhizosphere	MFETLAALSTISMIVIFVVLYQIDRKGRQEEADKSEPTPGSRT*
Ga0070705_1016948932	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQNGPRP*
Ga0070700_1016022852	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MFETFAVLTTISMIVIFVVLYQIDRKGRQEESEKSEPGA*
Ga0070662_1008052382	3300005457	Corn Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQSDPRP*
Ga0070662_1019727492	3300005457	Corn Rhizosphere	ATHMFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSQI*
Ga0068867_1000331564	3300005459	Miscanthus Rhizosphere	TMFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQRDPRP*
Ga0070685_112540281	3300005466	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDS
Ga0070697_1021449391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQNGPRP*
Ga0070672_1015749591	3300005543	Miscanthus Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTA
Ga0070704_1021761311	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MFETFAALSTISCIVIFVVLYRIDQAGRREESGKAEGQRDPRP*
Ga0068852_1007371192	3300005616	Corn Rhizosphere	MFETFAVVSTISMIVIFIVLYRIDQAGRREEAAKAEGQRDPRP*
Ga0068859_1001907874	3300005617	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYRIDQAGRREESAKAEGQSDPRP*
Ga0068861_1026709421	3300005719	Switchgrass Rhizosphere	STISMIVIFIVLYRIDQAGRREEAGKAEGRVDPRP*
Ga0068870_101469743	3300005840	Miscanthus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAAKAEGQGDPRP*
Ga0068863_1001726264	3300005841	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDPRV*
Ga0068863_1010851302	3300005841	Switchgrass Rhizosphere	MFETFAVVSTISMIVIFVVLYRIDQAGRREESAKAEGQSDPRP*
Ga0068860_1023728601	3300005843	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREDATKAEGQRDPRP*
Ga0068862_1007500673	3300005844	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQGDPRP*
Ga0066652_1006854212	3300006046	Soil	MFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGHSDPRL*
Ga0079222_113590252	3300006755	Agricultural Soil	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGHGDPRP*
Ga0075428_1009589993	3300006844	Populus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAERQSDPRP*
Ga0075428_1010708173	3300006844	Populus Rhizosphere	MFETFAVISTISCIVIFVVLYRIDQAGRREEAGKAEGQGDPRR*
Ga0075429_1007646601	3300006880	Populus Rhizosphere	HHEGLTPMFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAERQSDPRP*
Ga0079215_113537411	3300006894	Agricultural Soil	PKRPWTDMFETFAALSTISCIVIFVVLYRIELAGRREDAARAEGHSDPRP*
Ga0079218_100000432	3300007004	Agricultural Soil	MFETFAALSTISCIVIFVVLYRIELAGRREDAARAEGHSDPRP*
Ga0075435_1019260831	3300007076	Populus Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRASRREEAEKPERTPERRA*
Ga0111539_105532511	3300009094	Populus Rhizosphere	MFETLAALCTISMIVIFVVLYQVDRKGRQEEAEKSEPTAGRRT*
Ga0111539_133775302	3300009094	Populus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGQAE
Ga0105245_123300552	3300009098	Miscanthus Rhizosphere	MFETFAVVSTISMIVIFIVLYRIDQAGRREEAGKAEGQNGPRP*
Ga0075418_126165132	3300009100	Populus Rhizosphere	LQLQLYRVHHEGLTPMFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAERQSDPRP*
Ga0111538_115968621	3300009156	Populus Rhizosphere	LSTISMIVIFIVLYRIDQAGRREEAGQAEGQSDPRP*
Ga0105242_124081522	3300009176	Miscanthus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGRVDPRP*
Ga0105340_10401243	3300009610	Soil	MFETFAALSTISMIVIFVVLYRIELAGRREEAEKVQGHGDPRP*
Ga0105252_100964962	3300009678	Soil	MFETFAALSTVSMIVIFIVLYQIDRKGRQEDAEKTARTPDSRV*
Ga0126311_115649712	3300010045	Serpentine Soil	QTRALDTMFETFAALSTISMIVIFVVLYRIDQAGRREEAAKAEGHSDPRP*
Ga0134123_113976642	3300010403	Terrestrial Soil	MFETFAVISTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRP*
Ga0137325_10416632	3300011415	Soil	MFETFAALSTISCIVIFVVLYRIELAGRREDAAKAEGHHDPRP*
Ga0137349_10570672	3300012160	Soil	MFETFAALSTISMIVIFVVLYRIELAGRREDAEKAQGHGDPRP*
Ga0150985_1232115463	3300012212	Avena Fatua Rhizosphere	MFETFAVVSTISMIVIFVVLYRIDQAGRREEAAKAEGHRDPRP*
Ga0150984_1209813813	3300012469	Avena Fatua Rhizosphere	MFETFAVVSTISMIVIFIVLYRIDQAGRREEAGKAEGHSDPRP*
Ga0157284_101271771	3300012893	Soil	YSCNCNYIAKGTPRHMFETFAALSTISMVVIFIVLYRIDRRGREEEAGKTAHTPDSHV*
Ga0157309_103172772	3300012895	Soil	MFETFAALSTVSMVVIFIVLYRIDRRGREEEAGKTAHTPDSHV*
Ga0157299_101749521	3300012899	Soil	MFETFAVISTISMIVIFIVLYRIDQAGRREEAGKAKGQSDPRP*
Ga0157290_103195032	3300012909	Soil	MFETFAVISTISCIVIFVVLYRIDQAGRREEAGKAEGQGDPRP*
Ga0157375_131626632	3300013308	Miscanthus Rhizosphere	AALSTISMIVIFIVLYRIDQAGRREEAGKAEGQSDPRP*
Ga0157380_102189742	3300014326	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSQI*
Ga0157380_111384651	3300014326	Switchgrass Rhizosphere	PPMFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRP*
Ga0157380_124129652	3300014326	Switchgrass Rhizosphere	MFETFAVISTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRG*
Ga0157380_125067752	3300014326	Switchgrass Rhizosphere	FETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQIDPRP*
Ga0157377_116798091	3300014745	Miscanthus Rhizosphere	ALSTISMIVIFIVLYRIDQAGRREEAGQAEGQSDPRP*
Ga0157376_105249893	3300014969	Miscanthus Rhizosphere	MFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQGDPRP*
Ga0132258_100603998	3300015371	Arabidopsis Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRAGRREEAEKAERAPDSRV*
Ga0132258_103391654	3300015371	Arabidopsis Rhizosphere	MFETFAALSTISMIIIFIVLYRIDQAGRREEAGKAEGQRDPRP*
Ga0163161_120053302	3300017792	Switchgrass Rhizosphere	MFETLAVISTISMIVIFVVLYRIDQAGRREEADKAGRTPDPRV
Ga0190266_100067992	3300017965	Soil	MFETFAALSTISMIVIFVVLYRIELAGRREDAEKAQGHGDPRP
Ga0190266_103525641	3300017965	Soil	MFETLAALTTISMIVIFVVLFQIDRAGRLEEAGKAEPREPR
Ga0184628_100007743	3300018083	Groundwater Sediment	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSRV
Ga0190270_104547892	3300018469	Soil	MFETFAALSTISMIVIFVVLYRIELAGRREEAEKAQGQDDPRP
Ga0190270_108700021	3300018469	Soil	MFETFAALSTVSMIVIFIVLYQIDRKGRQEDAETTAGTPDSRV
Ga0190270_111873312	3300018469	Soil	MFETLAALTTISMIVIFVVLFQIDRAGRREEAGKAAPREPR
Ga0190274_100596554	3300018476	Soil	MFETFAALSTISMVVIFVVLYRIELAGRREDAEKAQGHGDPRP
Ga0190274_101160514	3300018476	Soil	MFETIAALSTISMVVIFIVLYQIDRKGRQEDAEKAAGPTDPRT
Ga0190274_106961942	3300018476	Soil	MFETFAALSTVSMVVIFIVLYRIDRRGREEEAGKTAHTPDSHV
Ga0190274_113506372	3300018476	Soil	MFETLAALGTISMIVIFVVLYQIDRKGRQEEAEKSEPTAGRRT
Ga0190274_114639792	3300018476	Soil	MFETLAALTTISMIVIFVVLYQVDRKGRQEEVEKSEPAAGRRT
Ga0190274_118999783	3300018476	Soil	MFETLAALCTISMVVIFVVLYQVDRKGRQEEAEKSDHTPGRST
Ga0190271_108157221	3300018481	Soil	MFETFAALSTISMVVIFIVLYQVDRKGRQEEAKKSEPTAGRRT
Ga0190271_130226121	3300018481	Soil	MFETFAALSTISCIVIFVVLYRIELAGRREDAAKADGHGDPRP
Ga0190271_130624962	3300018481	Soil	MFETFAALSTVSMIVIFIVLYQIDRKGRQEDAEKTARTPDSRV
Ga0173481_102101403	3300019356	Soil	MFETFAALSTISMVVIFIVLYRIDRRGREEEAGKTAHTPDSHV
Ga0193752_11163552	3300020027	Soil	MFETLAALTTLSMVVIFVVLYQIDRKGRREEAEKGERTAAPRS
Ga0193753_100044482	3300020034	Soil	MFETLAALCTISMIVIFVVLYRIDRAGRREEAEKSETALPRS
Ga0222622_110752052	3300022756	Groundwater Sediment	MFETFAVLSTISCVVIFVVLYRIDQAGRREEAGKAEGPSDPRP
Ga0247790_100079664	3300022915	Soil	MFETFAALSTISMVVIFIVLYRIDRRGREEEAGKAAHTPDSHV
Ga0207697_105481492	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQRDPRP
Ga0207656_100217473	3300025321	Corn Rhizosphere	MFETFAVVSTISMIVIFIVLYRIDQAGRREEAAKAEGQRDPRP
Ga0207682_103448901	3300025893	Miscanthus Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSQI
Ga0207682_104374603	3300025893	Miscanthus Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGQAEGQSDPRP
Ga0207710_101866533	3300025900	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQSDPRP
Ga0207680_109029333	3300025903	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAE
Ga0207680_110999691	3300025903	Switchgrass Rhizosphere	RGRASEPMFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQRDPRP
Ga0207643_105779681	3300025908	Miscanthus Rhizosphere	EPMFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRP
Ga0207662_102928442	3300025918	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYRIDQAGRREEAAKAEGQRDPRP
Ga0207649_114449192	3300025920	Corn Rhizosphere	STISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRP
Ga0207681_117890342	3300025923	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGRVDPRP
Ga0207694_118812812	3300025924	Corn Rhizosphere	MFETFAALSTISMIVIFVVLYRIDQAGRREESAKAEGQSDPRP
Ga0207650_100256072	3300025925	Switchgrass Rhizosphere	MFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRP
Ga0207650_106857311	3300025925	Switchgrass Rhizosphere	FAALSTISMIVIFIVLYRIDQAGRREEAGQAEGQSDPRP
Ga0207701_116865062	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	HMFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSQI
Ga0207669_111102493	3300025937	Miscanthus Rhizosphere	MFETFAALSTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRG
Ga0207691_111281813	3300025940	Miscanthus Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGT
Ga0207711_101580463	3300025941	Switchgrass Rhizosphere	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDPRV
Ga0207711_115376152	3300025941	Switchgrass Rhizosphere	LSTISMIVIFIVLYRIDQAGRREEAGKAEGQSDPRP
Ga0207679_113454033	3300025945	Corn Rhizosphere	MFETFAVVSTISMIVIFIVLYRIDQAGRREEAGKAEGQRDPRP
Ga0207648_121971322	3300026089	Miscanthus Rhizosphere	LSTISMIVIFVVLYRIDQAGRREESGKAEGQRDPRP
Ga0207675_1009701553	3300026118	Switchgrass Rhizosphere	MFETLAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDPRV
Ga0208185_10591193	3300027533	Soil	MFETFAALSTISMIVIFVVLYRIELAGRREEAEKVQGHGDPRP
Ga0209387_11777631	3300027639	Agricultural Soil	PKRPWTDMFETFAALSTISCIVIFVVLYRIELAGRREDAARAEGHSDPRP
Ga0209486_100019518	3300027886	Agricultural Soil	MFETFAALSTISCIVIFVVLYRIELAGRREDAARAEGHSDPRP
Ga0268265_101592533	3300028380	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQGDPRP
Ga0268265_123367792	3300028380	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREEAGKAEGQRDPR
Ga0268264_109332142	3300028381	Switchgrass Rhizosphere	MFETFAALSTISMIVIFIVLYRIDQAGRREDATKAEGQRDPRP
Ga0247818_113702082	3300028589	Soil	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSRI
Ga0307281_101727923	3300028803	Soil	VLSTISCIVIFVVLYRIDQAGRREEAGKAEGPSDPRP
Ga0247825_102222851	3300028812	Soil	LSTISMVVIFIVLYRIDRRGREEEAGKTAHTPDSHV
Ga0247825_105207003	3300028812	Soil	MFETFAALSTVSMIVIFIVLYQIDRKGRQEDAEKTAQTPDSRV
Ga0247825_108911822	3300028812	Soil	MFETFAALSTVSMIVIFIVLYQIDRKGRQEDAEKTVRTPDSRV
Ga0307505_100031696	3300031455	Soil	MFETLAALGTLACIAIFVTLVAVDRAGRREDAEKAARQDLQP
Ga0310888_106842152	3300031538	Soil	MFETFAVISTISMIVIFIVLYRIDQAGRREEAGKAKGQSDPRP
Ga0307408_1023617772	3300031548	Rhizosphere	MFETFAAVSTISMVVIFVVLYRIELSGRREDAEKARAQRESQP
Ga0310907_102612101	3300031847	Soil	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSR
Ga0310893_101845271	3300031892	Soil	MFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAG
Ga0310900_104053743	3300031908	Soil	RKGSATHMFETFAALSTISMIVIFVVLYQIDRKGRQEDAEKTAGTPDSQI
Ga0310900_118551422	3300031908	Soil	MFETFAVISTISMIVIFIVLYRIDQAGRREEAAKAEGQTDTRP
Ga0310884_102848262	3300031944	Soil	MFETFAVISTISCIVIFVVLYRIDQAGRREEAGKAEGQSDPRG
Ga0315910_102083423	3300032144	Soil	MFETFAVISTISCIVIFVVLYRIDQAGRREEAGKAEGQGDPRP
Ga0315910_104747522	3300032144	Soil	MFETFAAISTISCIVIFVVLYRIDQAGRREEAGKAEGQTDPRP
Ga0315912_104427552	3300032157	Soil	MFETFAALSTITMIVIFIVLYRIELAGRREEAQKAEGQGDPRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F063573

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences