Metagenome / Metatranscriptome Family F063442

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063442
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	75 residues
Representative Sequence	MRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG
Number of Associated Samples	99
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.85 %
% of genes near scaffold ends (potentially truncated)	34.11 %
% of genes from short scaffolds (< 2000 bps)	86.05 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.83

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.845 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (12.403 % of family members)
Environment Ontology (ENVO)	Unclassified (28.682 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.938 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.36% β-sheet: 27.18% Coil/Unstructured: 51.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.83
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.83
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SCOP family	SCOP domain	Representative PDB	TM-score
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d4fyla1	4fyl	0.67
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d4fyla1	4fyl	0.67
d.204.1.1: Ribosome binding protein Y (YfiA homologue)	d3v2cy_	3v2c	0.65
d.204.1.1: Ribosome binding protein Y (YfiA homologue)	d3v2cy_	3v2c	0.65
e.3.1.1: beta-lactamase/transpeptidase-like	d1vqqa3	1vqq	0.64
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d3tqma_	3tqm	0.64
e.3.1.1: beta-lactamase/transpeptidase-like	d1vqqa3	1vqq	0.64
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d3tqma_	3tqm	0.64
e.3.1.0: beta-lactamase/transpeptidase-like	d6i1ha1	6i1h	0.63
e.3.1.0: beta-lactamase/transpeptidase-like	d6i1ha1	6i1h	0.63

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00248	Aldo_ket_red	5.43
PF00275	EPSP_synthase	4.65
PF01522	Polysacc_deac_1	3.88
PF00296	Bac_luciferase	3.10
PF00582	Usp	2.33
PF04542	Sigma70_r2	2.33
PF12895	ANAPC3	2.33
PF00150	Cellulase	2.33
PF02639	DUF188	2.33
PF06127	Mpo1-like	1.55
PF13291	ACT_4	1.55
PF04993	TfoX_N	1.55
PF01177	Asp_Glu_race	1.55
PF07152	YaeQ	1.55
PF02515	CoA_transf_3	0.78
PF04545	Sigma70_r4	0.78
PF02126	PTE	0.78
PF00590	TP_methylase	0.78
PF02518	HATPase_c	0.78
PF13683	rve_3	0.78
PF13358	DDE_3	0.78
PF14534	DUF4440	0.78
PF05013	FGase	0.78
PF03446	NAD_binding_2	0.78
PF02668	TauD	0.78
PF08309	LVIVD	0.78
PF13594	Obsolete Pfam Family	0.78
PF13302	Acetyltransf_3	0.78
PF02943	FeThRed_B	0.78
PF01243	Putative_PNPOx	0.78
PF01042	Ribonuc_L-PSP	0.78
PF08281	Sigma70_r4_2	0.78
PF13432	TPR_16	0.78
PF09334	tRNA-synt_1g	0.78
PF03401	TctC	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	3.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.10
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	2.33
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.33
COG1671	Uncharacterized conserved protein YaiI, UPF0178 family	Function unknown [S]	2.33
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.33
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	2.33
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.33
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.33
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	1.55
COG4539	2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)	Lipid transport and metabolism [I]	1.55
COG4681	Uncharacterized conserved protein YaeQ, suppresses RfaH defect	Function unknown [S]	1.55
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.78
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.78
COG4802	Ferredoxin-thioredoxin reductase, catalytic subunit	Energy production and conversion [C]	0.78
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.78
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.78
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.78
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.78
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.78
COG1735	Predicted metal-dependent hydrolase, phosphotriesterase family	General function prediction only [R]	0.78
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.78
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.84 %
Unclassified	root	N/A	20.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.84 %
Unclassified	root	N/A	20.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.84 %
Unclassified	root	N/A	20.16 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	29.46 %
Unclassified	root	N/A	20.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	29.46 %
Unclassified	root	N/A	20.16 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	29.46 %
Unclassified	root	N/A	20.16 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	26.36 %
Unclassified	root	N/A	20.16 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	24.03 %
Unclassified	root	N/A	20.16 %
Candidatus Rokubacteria bacterium CSP1-6	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium CSP1-6	2.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725000\|GPWRP_F5MPXY302FTYQG	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300003994\|Ga0055435_10079800	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300004009\|Ga0055437_10082342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	921	Open in IMG/M
3300004157\|Ga0062590_101673593	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300004479\|Ga0062595_100076343	All Organisms → cellular organisms → Bacteria → Proteobacteria	1672	Open in IMG/M
3300004479\|Ga0062595_102696008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300005184\|Ga0066671_10433735	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300005295\|Ga0065707_10497338	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	760	Open in IMG/M
3300005330\|Ga0070690_100124668	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300005332\|Ga0066388_100416287	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300005332\|Ga0066388_101837805	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300005438\|Ga0070701_10669396	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300005438\|Ga0070701_10701680	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300005440\|Ga0070705_100055538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2328	Open in IMG/M
3300005440\|Ga0070705_100161466	Not Available	1498	Open in IMG/M
3300005444\|Ga0070694_100074360	All Organisms → cellular organisms → Bacteria	2348	Open in IMG/M
3300005444\|Ga0070694_101154961	Not Available	647	Open in IMG/M
3300005445\|Ga0070708_101481598	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300005445\|Ga0070708_102211434	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300005467\|Ga0070706_100259023	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300005468\|Ga0070707_101815373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300005471\|Ga0070698_101259260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300005518\|Ga0070699_101545928	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005526\|Ga0073909_10073233	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300005526\|Ga0073909_10644675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	527	Open in IMG/M
3300005536\|Ga0070697_100851811	Not Available	807	Open in IMG/M
3300005545\|Ga0070695_100474430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	963	Open in IMG/M
3300005577\|Ga0068857_101248278	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005617\|Ga0068859_100162209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2314	Open in IMG/M
3300005617\|Ga0068859_101452953	Not Available	756	Open in IMG/M
3300005618\|Ga0068864_102127035	All Organisms → cellular organisms → Bacteria → Terrabacteria group	568	Open in IMG/M
3300005764\|Ga0066903_100055905	All Organisms → cellular organisms → Bacteria	4871	Open in IMG/M
3300005764\|Ga0066903_100439169	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300005764\|Ga0066903_101859605	Not Available	1152	Open in IMG/M
3300005764\|Ga0066903_102879445	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300005764\|Ga0066903_103402380	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300005840\|Ga0068870_11348656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300006845\|Ga0075421_100193721	All Organisms → cellular organisms → Bacteria	2520	Open in IMG/M
3300006845\|Ga0075421_101616527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	704	Open in IMG/M
3300006847\|Ga0075431_100653487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300006847\|Ga0075431_101971567	Not Available	539	Open in IMG/M
3300006852\|Ga0075433_10600445	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300006852\|Ga0075433_11150705	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006853\|Ga0075420_100171684	All Organisms → cellular organisms → Bacteria	1898	Open in IMG/M
3300006880\|Ga0075429_101017828	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300006881\|Ga0068865_101609651	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300006954\|Ga0079219_10639124	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300009038\|Ga0099829_11404544	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300009094\|Ga0111539_11895244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300009098\|Ga0105245_11871598	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300009137\|Ga0066709_100572928	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1603	Open in IMG/M
3300009147\|Ga0114129_10913550	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300009157\|Ga0105092_10119581	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300009162\|Ga0075423_10353531	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300009177\|Ga0105248_13218658	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300009792\|Ga0126374_10364032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	997	Open in IMG/M
3300009792\|Ga0126374_10917451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	680	Open in IMG/M
3300010043\|Ga0126380_11448912	Not Available	606	Open in IMG/M
3300010154\|Ga0127503_10613850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	544	Open in IMG/M
3300010166\|Ga0126306_11619838	Not Available	539	Open in IMG/M
3300010359\|Ga0126376_10892839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	878	Open in IMG/M
3300010361\|Ga0126378_11978553	Not Available	664	Open in IMG/M
3300010391\|Ga0136847_12568978	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300010391\|Ga0136847_12929784	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300010397\|Ga0134124_11958912	Not Available	622	Open in IMG/M
3300010398\|Ga0126383_10925005	Not Available	959	Open in IMG/M
3300010400\|Ga0134122_12518340	Not Available	564	Open in IMG/M
3300010401\|Ga0134121_13169219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300010403\|Ga0134123_13103042	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300011442\|Ga0137437_1127542	Not Available	877	Open in IMG/M
3300012096\|Ga0137389_11201852	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300012189\|Ga0137388_10949521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	794	Open in IMG/M
3300012204\|Ga0137374_10003363	All Organisms → cellular organisms → Bacteria	18925	Open in IMG/M
3300012355\|Ga0137369_10282925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1238	Open in IMG/M
3300013306\|Ga0163162_10093205	All Organisms → cellular organisms → Bacteria	3096	Open in IMG/M
3300013308\|Ga0157375_13788869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300014326\|Ga0157380_12598560	Not Available	572	Open in IMG/M
3300014745\|Ga0157377_11502413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300014885\|Ga0180063_1308080	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium CSP1-6	502	Open in IMG/M
3300015259\|Ga0180085_1013248	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300015371\|Ga0132258_10118865	All Organisms → cellular organisms → Bacteria	6275	Open in IMG/M
3300015371\|Ga0132258_10272530	All Organisms → cellular organisms → Bacteria → Proteobacteria	4149	Open in IMG/M
3300015373\|Ga0132257_102304930	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300015374\|Ga0132255_103412831	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	676	Open in IMG/M
3300018058\|Ga0187766_10084231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1910	Open in IMG/M
3300018063\|Ga0184637_10015586	All Organisms → cellular organisms → Bacteria	4564	Open in IMG/M
3300018076\|Ga0184609_10521413	Not Available	539	Open in IMG/M
3300019254\|Ga0184641_1447908	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300019458\|Ga0187892_10012498	All Organisms → cellular organisms → Bacteria	10070	Open in IMG/M
3300020063\|Ga0180118_1347770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium CSP1-6	826	Open in IMG/M
3300021081\|Ga0210379_10165205	Not Available	946	Open in IMG/M
3300021090\|Ga0210377_10040224	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium CSP1-6	3285	Open in IMG/M
3300021560\|Ga0126371_10736661	Not Available	1133	Open in IMG/M
3300025904\|Ga0207647_10659325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300025910\|Ga0207684_10178496	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300025910\|Ga0207684_10379015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1217	Open in IMG/M
3300025917\|Ga0207660_10782340	Not Available	779	Open in IMG/M
3300025926\|Ga0207659_11660750	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300025936\|Ga0207670_11095192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	672	Open in IMG/M
3300025941\|Ga0207711_10147388	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300025941\|Ga0207711_11895923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300025942\|Ga0207689_10079892	All Organisms → cellular organisms → Bacteria → Proteobacteria	2688	Open in IMG/M
3300025961\|Ga0207712_10102029	All Organisms → cellular organisms → Bacteria	2135	Open in IMG/M
3300026035\|Ga0207703_10558755	Not Available	1080	Open in IMG/M
3300026035\|Ga0207703_10656453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300026088\|Ga0207641_12107162	Not Available	565	Open in IMG/M
3300027717\|Ga0209998_10015815	All Organisms → cellular organisms → Bacteria → Proteobacteria	1584	Open in IMG/M
3300027821\|Ga0209811_10054362	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300027821\|Ga0209811_10387646	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300027909\|Ga0209382_10289246	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300027909\|Ga0209382_10422777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1481	Open in IMG/M
3300027909\|Ga0209382_11146920	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	799	Open in IMG/M
3300027909\|Ga0209382_11292698	Not Available	740	Open in IMG/M
3300028381\|Ga0268264_11125545	Not Available	794	Open in IMG/M
3300031720\|Ga0307469_12268089	Not Available	529	Open in IMG/M
3300031820\|Ga0307473_10257009	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1075	Open in IMG/M
3300031820\|Ga0307473_10861289	Not Available	651	Open in IMG/M
3300031820\|Ga0307473_11177939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	568	Open in IMG/M
3300032180\|Ga0307471_100094976	All Organisms → cellular organisms → Bacteria	2683	Open in IMG/M
3300032180\|Ga0307471_101684428	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	788	Open in IMG/M
3300032180\|Ga0307471_101704894	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M
3300032180\|Ga0307471_103925883	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300032205\|Ga0307472_101679685	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300032770\|Ga0335085_11770149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300032782\|Ga0335082_10367722	Not Available	1304	Open in IMG/M
3300033004\|Ga0335084_10617712	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300033158\|Ga0335077_10410191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1453	Open in IMG/M
3300033233\|Ga0334722_10225463	Not Available	1382	Open in IMG/M
3300033433\|Ga0326726_10287790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.44%
Host-Associated	Host-Associated	32.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.04%
Plants	Host-Associated → Plants	32.56%
Aquatic	Environmental → Aquatic	12.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.95%
Freshwater	Environmental → Aquatic → Freshwater	6.98%
Sediment	Environmental → Aquatic → Sediment	3.88%
Marine	Environmental → Aquatic → Marine	1.55%
Peat	Environmental → Terrestrial → Peat	0.78%
Cave	Environmental → Terrestrial → Cave	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.46%
Loam	Environmental → Terrestrial → Soil → Loam	20.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.10%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Lake	Environmental → Aquatic → Freshwater → Lake	2.33%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.55%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.10%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.33%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.40%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.43%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.10%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.10%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.10%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.33%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.55%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.55%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.55%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.55%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.78%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.78%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725000	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWRP_01335460	2067725000	Soil	YSASPMRPLETEHQGWKVRVIAHPVGRGWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQTAGRAAALRWLDREANRG
Ga0055435_100798001	3300003994	Natural And Restored Wetlands	MRPLELEHQGWKIRVIASPAGRAWSALVEVRAPGSEDAAAPQVVPFSATLSSEKLAQSAGRDAAVRWIDREAKKG*
Ga0055437_100823422	3300004009	Natural And Restored Wetlands	VRYSTGEMRPLETEHQGFKIRIIARPVGQGWSALVEVWPDGSTDAADVRMVPFSATLSSEKQAQSAGRDAAVRWLDRETKKP*
Ga0062590_1016735932	3300004157	Soil	MRPLETEHQGWKVRVIAHPVGRGWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQTAGRAAALRWL
Ga0062595_1000763431	3300004479	Soil	MRPLQMTHQGWEIRVSAHRVGRAWSALVEASPPGQPWTDAQVVPFNATLPSEKLAQLAGRAAAIRWVDREAKRA*
Ga0062595_1026960082	3300004479	Soil	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQTAGRAAAVRWLDRE
Ga0066671_104337352	3300005184	Soil	MRPLEVEHHGYRIRVNAHPVGRSWSALVEVWPPGAAPDGEAQVIPFHGRLTSEKLAQAAGRAAAILWLDRQAKRR*
Ga0065707_104973382	3300005295	Switchgrass Rhizosphere	MRPLEIEHQGWKIRVIAHPVGRAWSALVEVWAPGSGAAAEARVVPFNATHASEKLAQAAGRTAALRWVDQEKKRAPG*
Ga0070690_1001246682	3300005330	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQTAGRAAAVRWLDREAKRG*
Ga0066388_1004162872	3300005332	Tropical Forest Soil	VIAHPVGRAWSALVEVWPPASEDGAEAQVVPFNTTAASEKLAQTAGRQVAIRWLEREAKQA*
Ga0066388_1018378052	3300005332	Tropical Forest Soil	MRPLETEYQGWKVRVRAYPVGRAWSALVEVWPPGAEDTAEARVVPFNATRASEKLAQASGRDAAIHWLDREGKRD*
Ga0070701_106693962	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0070701_107016802	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0070705_1000555382	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VIAHPVGRAWSALVEIRPPGAADDAEPQIVPFNTTLPSEKLAQAAGRDAAIRWLDREAKKG*
Ga0070705_1001614662	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	QGWKVRVIAHPVGGAWSALVEVWPPESADTAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0070694_1000743604	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWRVRVIAHPAGRAWAALVEVWPPGSAETDEARVVPFSTTLSSEKLAQAAGRAAAVRWLDREVQRT*
Ga0070694_1011549612	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SPMRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0070708_1014815982	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIARPVGRAWSALVEVWPPGAADAAEARVVPFNATLPSEKLAQAAGRAAAVRWLDREAKRGESVR*
Ga0070708_1022114342	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	QLRYSASPMRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPESADTAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0070706_1002590233	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGRAWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQAAGRVAALRWLDREAKRG*
Ga0070707_1018153731	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VRQLRHSASPMRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPESADTAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0070698_1012592601	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLEAEHRGWKIRVIAHPVGGTWTALVEVRAPGSADGAEAQLVPFSATLPSEKDAQAAGRLAAVRWLDREATSG*
Ga0070699_1015459281	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHKGWRIRVIAQPVGRGWTALVEAWEPGAADGAEPRLVPFSQQLPTEKAAQAAGRG
Ga0073909_100732331	3300005526	Surface Soil	MRPLQTEHQGWQVRVIAYPVGRAWSALIEVWPQGSADTAERRVVPFNSSLSSEKLAQAAGRAAAIQWLDREAKSS*
Ga0073909_106446752	3300005526	Surface Soil	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPEPADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWVDREAKRG*
Ga0070697_1008518112	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGRGWSALVEVWPPGSADTVEVRVVPFSATLSSEKLAQTAGRAAAVRWLDRE
Ga0070695_1004744302	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VIAHPAGRAWAALVEVWPPGSAETDEARVVPFSTTLSSEKLAQAAGRAAAVRWLDREVQRT*
Ga0068857_1012482782	3300005577	Corn Rhizosphere	MRPLETEHKGWRIRVIAHPVGRAWSALVEVWEPGAPEGAEPRLVPFSQQMPSEKEAQVAGRKAALRWLDRGGAGAPS*
Ga0068859_1001622092	3300005617	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSADTVEARVVPFSATLSSEKLAQTAGRAAAVRWVDREAKRGQSDDKG*
Ga0068859_1014529532	3300005617	Switchgrass Rhizosphere	SQLRYSASPMRPLETEHQGWKVRVIAHPVGRGWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQTAGRAAALRWLDREANRG*
Ga0068864_1021270352	3300005618	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQTAGRAA
Ga0066903_1000559053	3300005764	Tropical Forest Soil	MRPLEAEHRGWRIRVIAHPVGRAWSALVEVWPPASEDGAEAQVVPFNTTAASEKLAQTAGRQVAIRWLEREAKQA*
Ga0066903_1004391694	3300005764	Tropical Forest Soil	MRPLETEHQGFKVRVIARPVGRGWSALVEVWPEASTDDADVRVVPFNATLGSEKLAQSAGRDAALRWLDRDRKRG*
Ga0066903_1018596052	3300005764	Tropical Forest Soil	MRPLATEHRGYRVRVIARPVGRGWSALVEVWSPGSADDAEPQMVPFSANLSSEKLAQNAGRDAAVRWIDRALESQRPAS*
Ga0066903_1028794452	3300005764	Tropical Forest Soil	MRASTWGAQLRYSASSMRPLATEHRGYKIRVIARPVGRGWSALVEVSPPGSPDDAEPQMVPFNATLSSEKLAQGAGRDAAVRWIDRALESAQPKS*
Ga0066903_1034023802	3300005764	Tropical Forest Soil	MRPLELEHQGWKVRVRAYPVGRAWSALVEVWPPGAEDTAEARVVPFNATRASEKLAQASGRDAAIHWLDREGKRD*
Ga0068870_113486562	3300005840	Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPGSPETDEARVVPFSATLSSEKLAQTAGRAAAVRWLDREAKRG*
Ga0075421_1001937212	3300006845	Populus Rhizosphere	MRPLETEHNGWKIRVIAHPVGRTWAALVEVWAPGSADGAEAQVVPFNATLPSEKEAQTAGRSAAVRWLDREATRS*
Ga0075421_1016165272	3300006845	Populus Rhizosphere	MRPLEIEHQGWKIRVIAHPVGRAWSALVEVWAPGSGAAADARVVPFNATHASEKLAQAAGRTAALRWVDQE
Ga0075431_1006534873	3300006847	Populus Rhizosphere	MRPLEIEHKGWRIRVIAQPVGRGWTALVEAWEPGAAEGTEPRLVPFSQQLPTEKAAQAAGRTVALRWVDRAGDKPAN*
Ga0075431_1019715672	3300006847	Populus Rhizosphere	MRPLATEHQGWRIRVIAHPVGRAWSALVEIRPPGAADDAEPQIVPFNTTLPSEKLAQAAGRDAAIRWLDREAKKG*
Ga0075433_106004451	3300006852	Populus Rhizosphere	MRPLEIEHKGWRIRVIAQPVGRGWTALVEAWEPGAAEGTEPRLVPFSQQLPTEKAAQAAGRTAALRWLDRAGEKPAN*
Ga0075433_111507052	3300006852	Populus Rhizosphere	MRPLEAEHRGWKIRVIAHPVGGTWTALVEVRAPGSADGAEAQLVPFSATLPSEKEAQAAGRLAAVRWLDREATSG*
Ga0075420_1001716842	3300006853	Populus Rhizosphere	MRPLETEHKGWRIRVIAQPVGRGWTALVEAWEPGAAEGAEPRLVPFSQQLPTEKAAQAAGRTVALRWVDRAGDKPAN*
Ga0075429_1010178282	3300006880	Populus Rhizosphere	MRPLEAEHRGWKIRVIAHPVGRTWTALVEVWPPESGDGAEARVVPFNTTLPSEKEAQAAGRSAAVRWLDREATRS
Ga0068865_1016096512	3300006881	Miscanthus Rhizosphere	RPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0079219_106391242	3300006954	Agricultural Soil	RYSALPMRPLQMTHQGWEIRVSAHRVGRAWSALVEASPPGQPWTDAQVVPFNATLPSEKLAQLAGRAAAIRWVDREAKRA*
Ga0099829_114045441	3300009038	Vadose Zone Soil	MRPLETEHQGWKVRVIARPVGRAWSALVEVWAPGSADSAEARVVPFNATRSSEKLAQAAGRTAAIRWLDREAKRGSQ
Ga0111539_118952441	3300009094	Populus Rhizosphere	SAAMRPLETEHKGWRIRVIAHPVGRAWSALVEVWEPGAPEGAEPRLVPFSQQMPSEKEAQVAGRKAALRWLDRGGAGAPS*
Ga0105245_118715981	3300009098	Miscanthus Rhizosphere	MRPLETEHQGLKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRA
Ga0066709_1005729282	3300009137	Grasslands Soil	MRPLETEHQGWKIRVRAHPVGRAWSALVEVWATGSADAAEAQTVPFNATLSSEKLAQAAGRDAAIRWLDREAKRGPAGPPP*
Ga0114129_109135502	3300009147	Populus Rhizosphere	MRPLEAEHQGWKIRVIARPVGRGWSALVEVWAAGSADDAEPQVVPFSGTLSTEKLAQAAGRDAAVRWLDRQAKQGESS*
Ga0105092_101195813	3300009157	Freshwater Sediment	MISAPLRYSASPMRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLASEKLAQAAGRAAAVRWLDREAKRS*
Ga0075423_103535313	3300009162	Populus Rhizosphere	MRPLETEHKGWRIRVIAHPVGRGWTALVEAWEPGAAEGAEPRLVPFNQQLPTEKAAQATGRTAALRWVDRLAAPPPGPEAKP*
Ga0105248_132186582	3300009177	Switchgrass Rhizosphere	MRPLETEHEGWKVRVIAHPVGRGWSALVEVWPPGSADNAEARVVPFSATLSSEKLAQTAGRAAAVRWLDRESKRA*
Ga0126374_103640321	3300009792	Tropical Forest Soil	MRPLEAEHRGWRIRVIAHPVGRAWSALVEVWPPASEDGAEAQVVPFNTTAASEKLAQTAGRQVAIRWLEREAKQA
Ga0126374_109174512	3300009792	Tropical Forest Soil	MRPLETEYQGWKVRVRAYPVGRAWSALVEVWPPGAEDTAEARVVPFNATRASEKLAQASGRDAAIHWLEREGKRD*
Ga0126380_114489122	3300010043	Tropical Forest Soil	LSMRPLEAEHKGWKIRVIAHPVGRGWSALVEVWPPESGDAAEARVVPFNATRASEKLAQASGRDAAIHWLERESKRD*
Ga0127503_106138501	3300010154	Soil	VRVIAHPVGGAWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQAAGRTAAVRWLDREAKRG*
Ga0126306_116198381	3300010166	Serpentine Soil	MRPLETEHHGWKVRVSAHPVGRAWSALVEVWPPESTGEARVVPFNATLSSEKLAQAAGRAAAVRWLERQAT*
Ga0126376_108928392	3300010359	Tropical Forest Soil	MRPLETEYQGWKVRVRAYPVGRAWSALVEVWPPGSEDTAEARVVPFNATRASEKLAQASGRDAAIHWLDREGKRD*
Ga0126378_119785532	3300010361	Tropical Forest Soil	MRPLETEHQGFKVRVIARPVGRGWSALVEVWPEASTDDADVRVVPFNATLGSEKLAQSAGRDAALRWLDREGKRG*
Ga0136847_125689782	3300010391	Freshwater Sediment	MRPLEIVHEGWKIRVIAHPVGRAWSALVEVWAPGSADAAEARIVPFNATLSSEKLAQVAGRTAAIRWLDREEKGRRG*
Ga0136847_129297842	3300010391	Freshwater Sediment	AHPVGRAWSALIEVWPPGSADTAEARVVPFNAPLSSEKLAQTAGRAAAVRWLDREAKRG*
Ga0134124_119589122	3300010397	Terrestrial Soil	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAHTAGRAAALRCVDREAKRGQSDDKG*
Ga0126383_109250051	3300010398	Tropical Forest Soil	MRPLETEHQGFKVRVIARPVGRGWSALVEVWPEASTDDADVRVVPFNATLGSEKLAQSAGRDAALRWLDREAKRG*
Ga0134122_125183402	3300010400	Terrestrial Soil	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGAAETAAEARVVPFSATLSSEKLAPAAGRAAAVRWLDREAKKG*
Ga0134121_131692192	3300010401	Terrestrial Soil	EHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQTAGRAAAVRWLDREAKRG*
Ga0134123_131030422	3300010403	Terrestrial Soil	MRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSTDTTEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0137437_11275422	3300011442	Soil	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSAALSSEKLAQTAGRAAAVRWLDREAKRG*
Ga0137389_112018521	3300012096	Vadose Zone Soil	PMRPLETEYQGWKVRVIARPVGRAWSALVEVWAPGSADSAEARVVPFNATRSSEKLAQAAGRTAAIRWLDREAKRGSQAADPDGGGPG*
Ga0137388_109495212	3300012189	Vadose Zone Soil	MRPLETEHQGWKVRVIAHPVGRAWSALIEVWPPGSADGAEARVVPFHARLSSEKLAQAAGRAAAVCWLDREAKRA*
Ga0137374_100033638	3300012204	Vadose Zone Soil	MRPLETEHDGWQIRVIARPVGRAWSALVEVWATGSAASAEARIVPFNATLSSEKLAQAAGRDAAIRWLDREAKRG*
Ga0137369_102829252	3300012355	Vadose Zone Soil	MRPLETEHHGWQIRVIARPVGRAWSALVEVWAMGSADAAEARIVPFNATLSSEKLAQAAGRDAAIRWLDREAKRG*
Ga0163162_100932051	3300013306	Switchgrass Rhizosphere	PVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0157375_137888692	3300013308	Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHAVGQGWSALVEVWPRDPAATAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0157380_125985601	3300014326	Switchgrass Rhizosphere	VRVIAHPAGRAWAALVEVWPPGSAETDEARVVPFSTTLSSEKLAQAAGRAAAVRWLDREVQRT*
Ga0157377_115024131	3300014745	Miscanthus Rhizosphere	VIAHPVGQVWSALVEVWPPGSADTDEARVVPFSATLSSEKLAQTAGRAAAVRWL
Ga0180063_13080802	3300014885	Soil	RPLETEHQSWKIRVIAHPVGRGWSALVEVWPTGSADTAETRVVPFNATLSSEKLAQTAGRVAAIRWLDREAKRA*
Ga0180085_10132482	3300015259	Soil	MRPLETEHQSWKIRVIAHPVGRGWSALVEVWPTGSADTAETRVVPFNATLSSEKLAQTAGRVAAIRWLDREAKRA*
Ga0132258_101188655	3300015371	Arabidopsis Rhizosphere	MRPLETEHKGWKIRVIATPVGRNWSALVEAWAPDAADGAEPRLVPFSQALSSEKLAQVAGRAAALRWIDREAAKASS*
Ga0132258_102725305	3300015371	Arabidopsis Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPEPAAAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0132257_1023049302	3300015373	Arabidopsis Rhizosphere	MRPLETEHKGWKIRVIATPVGRNWSALVEAWAPDAADGAEPRLVPFSQALSSEKLAQVAGRAA
Ga0132255_1034128312	3300015374	Arabidopsis Rhizosphere	MRPLETEHQGWKVRVIAHPVGQRWSALVEVWPPEPAAAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG*
Ga0187766_100842313	3300018058	Tropical Peatland	VRYSAPVMRPLETEQAGWKVRVIAHPVGRAWSALVEVWAPGSAEDAEARVVPFNATLPSEKQAQAAGRAAAVRWLEREAKRSAPGGEPPGSTRTAARGE
Ga0184637_100155868	3300018063	Groundwater Sediment	MRPLEAEHQGWRIRVIAHPVGRGVWSALVEVRAPGSADAAEAQIVPFNATLPSEKLAQAAGRTAAIRWLEREAKRG
Ga0184609_105214132	3300018076	Groundwater Sediment	VNSAKPVRVRYSPFPMRPLETEHQGWKIRVIAHPVGRGWSALVEVWSAASADATEARIVPFSATLSSEKLAQAAGRATAIGWLEREAKRAREIR
Ga0184641_14479081	3300019254	Groundwater Sediment	MRPLETEHQGWKVRVIAHPVGRGWSALIEVWPPGSADTVEARVVPFSATLSSEKLAQAAGRAAAVRWLDRGAKRG
Ga0187892_100124984	3300019458	Bio-Ooze	VRPLEIEHQGWKVRVIARPVGPRWSALVEVWAPGSADGAEGRVVPFSATLNSEKEAQAAGRRAAMRFVDREAKRAQEA
Ga0180118_13477702	3300020063	Groundwater Sediment	MRPLETEHQSWKIRVIAHPVGRGWSALVEVWPTGSADTAETRVVPFNATLSSEKLAQTAGRVAAIRWLDREAKRA
Ga0210379_101652052	3300021081	Groundwater Sediment	LRYSASPMRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSADTVEARVVPFSTTLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0210377_100402243	3300021090	Groundwater Sediment	MALDRAGIRVNSAKPVRVRYSPSPMRPLETEHLGWKIRVIAHPVGRGWSALVEVWATALADATEARIVPFSATLSSEKLAQAAGRAAAIRWLDREAKRD
Ga0126371_107366612	3300021560	Tropical Forest Soil	MRPLETEHQGFKVRVIARPVGRGWSALVEVWPEASTDDADVRVVPFNATLGSEKLAQSAGRDAALRWLDRDRKRG
Ga0207647_106593252	3300025904	Corn Rhizosphere	MRPLETEHKGWRIRVIAHPVGRAWSALVEVWEPGAPEGAEPRLVPFSQQMPSEKEAQVAGRKAALRWLDRGGAGAPS
Ga0207684_101784963	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGRAWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQAAGRVAALRWLDREAKRG
Ga0207684_103790152	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHAVGRAWSALIEVWPPGSADAAEARVVPFHARLSSEKLAQAAGRAAAVRWLDREAKRA
Ga0207660_107823401	3300025917	Corn Rhizosphere	QLRYSASPMRPLETEHQRWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0207659_116607501	3300025926	Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRAAA
Ga0207670_110951923	3300025936	Switchgrass Rhizosphere	SASPMRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0207711_101473883	3300025941	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSADTVEARVVPFSATLSSEKLAQTAGRAAAVRWVDREAKRGQSDDKG
Ga0207711_118959232	3300025941	Switchgrass Rhizosphere	MRPLETEHEGWKVRVIAHPVGRGWSALVEVWPPGSADNAEARVVPFSATLSSEKLAQTAGRAAAVRWLDRESKRA
Ga0207689_100798921	3300025942	Miscanthus Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPESADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREA
Ga0207712_101020293	3300025961	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQTAGRAAAVRWLDREAKRG
Ga0207703_105587552	3300026035	Switchgrass Rhizosphere	RPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQTAGRAAAVRWLDREAKRG
Ga0207703_106564532	3300026035	Switchgrass Rhizosphere	MRPLETEHQGWRVRVIAHPAGRAWAALVEVWPPGSAETDEARVVPFSTTLSSEKLAQAAGRAAAVRWLDREVQRT
Ga0207641_121071621	3300026088	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWSPEPADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0209998_100158152	3300027717	Arabidopsis Thaliana Rhizosphere	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPEPADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0209811_100543622	3300027821	Surface Soil	MRPLQTEHQGWQVRVIAYPVGRAWSALIEVWPQGSADTAERRVVPFNSSLSSEKLAQAAGRAAAIQWLDREAKSS
Ga0209811_103876462	3300027821	Surface Soil	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPEPADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWVDREAKRG
Ga0209382_102892462	3300027909	Populus Rhizosphere	MRPLETEHNGWKIRVIAHPVGRTWAALVEVWAPGSADGAEAQVVPFNATLPSEKEAQTAGRSAAVRWLDREATRS
Ga0209382_104227771	3300027909	Populus Rhizosphere	MRPLEIEHKGWRIRVIAQPVGRGWTALVEAWEPGAAEGTEPRLVPFSQQLPTEKAAQAAGRTAALRWLDRAGEKPAN
Ga0209382_111469202	3300027909	Populus Rhizosphere	MRPLEIEHQGWKIRVIAHPVGRAWSALVEVWAPGSGAAADARVVPFNATHASEKLAQAAGRTAALRWVDQEKKRAPG
Ga0209382_112926982	3300027909	Populus Rhizosphere	VIAHPVGRAWSALVEIRPPGAADDAEPQIVPFNTTLPSEKLAQAAGRDAAIRWLDREAKK
Ga0268264_111255453	3300028381	Switchgrass Rhizosphere	MRPLETEHQGWKVRVIAHPVGGAWSALIEVWPPGSAETAAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0307469_122680891	3300031720	Hardwood Forest Soil	MRPLEITHQGWRVRVIAHPVGRGWSALVEVWAPGSPDGADARTVPFNATLASEKLAQTAGRAAAVRWLDREAQRGRAPDLP
Ga0307473_102570092	3300031820	Hardwood Forest Soil	MRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0307473_108612892	3300031820	Hardwood Forest Soil	MRPLETEQHGWKIRVMAYPVGRAWTALVEATAPGAPEGEARVVPFNATLSSEKLAQAAGREAAIVWVERETKRG
Ga0307473_111779392	3300031820	Hardwood Forest Soil	MRPLEIEHHGWKIRVIAHPVGRAWSALVEVWAPGSADAAEARAVPFNATHSSEKLAQAAGRTTALRWVDQERKRGPS
Ga0307471_1000949763	3300032180	Hardwood Forest Soil	MRPLETEHQGWKVRVIAHPVGRAWSALIEVWPPESADGAEARVVPFHARLSSEKLAQAAGRAAAVRWLDREAKRA
Ga0307471_1016844281	3300032180	Hardwood Forest Soil	MRPLETEHLGFKVRVIARPVGRGWSALVEVWPAASVDGAEARVVPFSATLSSEKLAQSAGRDAAVRWLEREGNRG
Ga0307471_1017048942	3300032180	Hardwood Forest Soil	MRPLETEQHGWKIRVMAYPVGRAWTALVEATAPGAPEGEARVVPFNATLSSEKLAQAAGRDAAIHWVERETKRG
Ga0307471_1039258831	3300032180	Hardwood Forest Soil	VIAHPVGGAWSPLVEVWPPGSADAAEARVVPFSATLSSAKLAQAAGRAAGVRWLDREAKRGQRPLGSGGAHGHAG
Ga0307472_1016796851	3300032205	Hardwood Forest Soil	MRPLETVHQGWKVRVIAHPVGGAWSALVEVWPPGSADTAEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG
Ga0335085_117701492	3300032770	Soil	MRPLETEHQGFKVRVIARPVGRGWSALVEVWPEASTDDADVRVVPFSATLASEKLAQNAGRDAALRWVDRESKRG
Ga0335082_103677221	3300032782	Soil	SSLSMRPLEAEHRGWRIRVIAHPVGRAWSALVEVWPPGSEDGAEPRLVPFNATAASEKLAQTAGRQAAIRWLDREAKQA
Ga0335084_106177122	3300033004	Soil	MRPLEAEHRGWKIRVIASSAGRAWSALVEVRAPGSDAAAEPTVVPFSGTHSTEKLAQSAGRDAAMRFIEREAKKS
Ga0335077_104101913	3300033158	Soil	MRPLETEHQGFKVRVIARPVGRGWSALVEVWPEASTDDADVRVVPFSATLASEKLAQNAGRDAALRW
Ga0334722_102254631	3300033233	Sediment	MRPLEIEHQGWKVRVIAHPVGRGWSALVEVWPAPSGEAAEVRVVPFSATLSSEKLAQTAGRAAAVRW
Ga0326726_102877902	3300033433	Peat Soil	MRPLETEHQGWKVRVIAHPVGQGWSALVEVWPPGSADTPEARVVPFSGTLSSEKLAQAAGRAAAVRWLDREAKRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063442

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences