Metagenome / Metatranscriptome Family F063347

Basic Information
Family ID	F063347
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	49 residues
Representative Sequence	MAQTTFSGPVTSNAGFNSDDTLTAADYTSGSYNLTDFTVRPAATWTGTVA
Number of Associated Samples	65
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.16 %
% of genes near scaffold ends (potentially truncated)	91.47 %
% of genes from short scaffolds (< 2000 bps)	77.52 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (78.295 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (59.690 % of family members)
Environment Ontology (ENVO)	Unclassified (67.442 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (70.543 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25917J50250_10552212 2JGI25914J50564_100164135 3JGI25925J51416_100191856 4JGI25925J51416_100534761 5Ga0066179_102451462 6Ga0007759_115307221 7Ga0049083_101101001 8Ga0049083_101530881 9Ga0049083_103016151 10Ga0049081_103351512 11Ga0049084_101135752 12Ga0105736_11527722 13Ga0108970_107013111 14Ga0114363_10837742 15Ga0114364_10094831 16Ga0102860_11446421 17Ga0177922_104827011 18Ga0181338_100014115 19Ga0181338_10059564 20Ga0181338_10323532 21Ga0181338_10599681 22Ga0181350_10023109 23Ga0181347_10040151 24Ga0181347_10213034 25Ga0181347_10566251 26Ga0181347_10613382 27Ga0181347_11214961 28Ga0181362_10316711 29Ga0181362_11247331 30Ga0181365_10305851 31Ga0181365_10744471 32Ga0181365_11164471 33Ga0181365_11316901 34Ga0181356_10176381 35Ga0181356_10499813 36Ga0181356_10917183 37Ga0181356_12188192 38Ga0181356_12437512 39Ga0181358_11238521 40Ga0181358_11546493 41Ga0181357_12139191 42Ga0181357_12555351 43Ga0181357_13324711 44Ga0181349_11836622 45Ga0181349_12522761 46Ga0181349_12622691 47Ga0181349_12792191 48Ga0181346_10225145 49Ga0181346_13084542 50Ga0181348_10011131 51Ga0181348_100187910 52Ga0181348_11079573 53Ga0181348_12006781 54Ga0181355_10656671 55Ga0181355_11415792 56Ga0181359_10549342 57Ga0181359_10907251 58Ga0181359_11191281 59Ga0181359_11314372 60Ga0181359_11805661 61Ga0181359_12342481 62Ga0222712_103214381 63Ga0181354_10016091 64Ga0181354_10160981 65Ga0181354_10233801 66Ga0181354_10399931 67Ga0181354_11217891 68Ga0181354_11833892 69Ga0181354_11992291 70Ga0181354_12158951 71Ga0181354_12376612 72Ga0181354_12412832 73Ga0181351_10257655 74Ga0181351_10426014 75Ga0181351_10788101 76Ga0181351_11850622 77Ga0181351_12657102 78Ga0181351_12718482 79Ga0255204_10366121 80Ga0208800_10608201 81Ga0255137_10060827 82Ga0208022_11135791 83Ga0209552_10212191 84Ga0208951_11052011 85Ga0208951_11813771 86Ga0208942_11786861 87Ga0209356_10261074 88Ga0208960_10160221 89Ga0209357_11125321 90Ga0209553_10538291 91Ga0209553_10645871 92Ga0209553_11950981 93Ga0209553_12536742 94Ga0209442_11417072 95Ga0209355_12903781 96Ga0209354_103567541 97Ga0209354_104337321 98Ga0307378_109296661 99Ga0307377_101790233 100Ga0307377_105497641 101Ga0315291_104124573 102Ga0315291_114393672 103Ga0315293_100291481 104Ga0315293_102596601 105Ga0315293_108762131 106Ga0315907_106293711 107Ga0315288_115527542 108Ga0315288_117020371 109Ga0315290_116853472 110Ga0315285_102115183 111Ga0315285_103408012 112Ga0315285_104036323 113Ga0315294_103240913 114Ga0315294_105826181 115Ga0315294_114799672 116Ga0315284_125119851 117Ga0315905_114844432 118Ga0315902_103367003 119Ga0315277_111279212 120Ga0315292_110423311 121Ga0315281_111412262 122Ga0315276_102212424 123Ga0315276_121884652 124Ga0315270_101337133 125Ga0315286_114883112 126Ga0315275_103442931 127Ga0315273_104177773 128Ga0334722_100544061 129Ga0334722_108753992
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25917J50250_10552212 2Ga0066179_102451462 3Ga0007759_115307221 4Ga0049083_101101001 5Ga0049083_101530881 6Ga0049084_101135752 7Ga0181338_10059564 8Ga0181338_10599681 9Ga0181347_11214961 10Ga0181354_10233801 11Ga0315290_116853472 12Ga0315294_114799672 13Ga0315284_125119851 14Ga0315276_102212424 15Ga0334722_100544061
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0177922_104827011 2Ga0007759_115307221 3Ga0181338_100014115 4Ga0181338_10599681 5Ga0181350_10023109 6Ga0181365_10305851 7Ga0181348_10011131 8Ga0181359_10549342 9Ga0181354_10233801 10Ga0181354_12376612 11Ga0181354_12412832 12Ga0181351_10257655 13Ga0208800_10608201 14Ga0209553_12536742 15Ga0307378_109296661 16Ga0307377_101790233 17Ga0315293_100291481 18Ga0315276_102212424 19Ga0315270_101337133 20Ga0315273_104177773
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.97% β-sheet: 12.82% Coil/Unstructured: 78.21%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF10124	Mu-like_gpT	21.71
PF13640	2OG-FeII_Oxy_3	2.33
PF00166	Cpn10	2.33
PF11351	GTA_holin_3TM	1.55
PF03237	Terminase_6N	0.78
PF00583	Acetyltransf_1	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	2.33

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	21.71 %
Unclassified	root	N/A	78.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	11.63 %
Unclassified	root	N/A	78.29 %
Viruses	superkingdom	All Organisms → Viruses	10.08 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.85 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	6.20 %
Unclassified	root	N/A	78.29 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.78 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.78 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	6.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.33 %
Unclassified	root	N/A	78.29 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.33 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Unclassified	root	N/A	78.29 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.78 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.78 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	6.20 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6.20 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.78 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2.33 %
Unclassified	root	N/A	78.29 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	4.65 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Kyanoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	0.78 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.78 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	2.33 %
Unclassified	root	N/A	78.29 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	1.55 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.78 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Kyanoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	0.78 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.78 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	2.33 %
Unclassified	root	N/A	78.29 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4.65 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003395\|JGI25917J50250_1055221	Not Available	843	Open in IMG/M
3300003429\|JGI25914J50564_10016413	All Organisms → cellular organisms → Bacteria	2279	Open in IMG/M
3300003497\|JGI25925J51416_10019185	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300003497\|JGI25925J51416_10053476	Not Available	1061	Open in IMG/M
3300004126\|Ga0066179_10245146	Not Available	511	Open in IMG/M
3300004836\|Ga0007759_11530722	Not Available	1109	Open in IMG/M
3300005580\|Ga0049083_10110100	Not Available	952	Open in IMG/M
3300005580\|Ga0049083_10153088	Not Available	791	Open in IMG/M
3300005580\|Ga0049083_10301615	Not Available	536	Open in IMG/M
3300005581\|Ga0049081_10335151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	515	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.22%
Host-Associated	Host-Associated	0.78%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.90%
Plants	Host-Associated → Plants	0.78%
Terrestrial	Environmental → Terrestrial	2.33%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	93.02%
Leaf	Host-Associated → Plants → Leaf	0.78%
Marine	Environmental → Aquatic → Marine	3.88%
Soil	Environmental → Terrestrial → Soil	2.33%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	2.33%
Coastal	Environmental → Aquatic → Marine → Coastal	0.78%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.33%
Lake	Environmental → Aquatic → Freshwater → Lake	22.48%
Lentic	Environmental → Aquatic → Freshwater → Lentic	66.67%
River	Environmental → Aquatic → Freshwater → River	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.33%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	20.16%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	66.67%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.33%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.33%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.78%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.78%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.78%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.33%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.55%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.78%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	59.69%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	6.98%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.55%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	20.16%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.33%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003395	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN	Environmental	Open in IMG/M
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300004836	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental	Open in IMG/M
3300007861	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25917J50250_10552212	3300003395	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSG
JGI25914J50564_100164135	3300003429	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTV
JGI25925J51416_100191856	3300003497	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATY
JGI25925J51416_100534761	3300003497	Freshwater Lake	MAQTTFSGPVTSNAGFNSXDTLTSADLSSGGFNLTDFTVRPAATYSG
Ga0066179_102451462	3300004126	Freshwater Lake	LEKLGEYIMAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTD
Ga0007759_115307221	3300004836	Freshwater Lake	MARTTFSGPVTSQAGFNSDDTLNATDLASGAFNLTDFTVRPAVSYTGTVAALVGAVNQRTAGVS
Ga0049083_101101001	3300005580	Freshwater Lentic	MGTTTFSGPVVSNAGFTSDDTLNATDLATGAYNLTDFTVRPAANWSG
Ga0049083_101530881	3300005580	Freshwater Lentic	MAQTTFSGPVTSKAGFNSDDTLTAADYTSGSFNLTDFT
Ga0049083_103016151	3300005580	Freshwater Lentic	MAQTTFSGPVTSKAGFNSDDTLTTADYTSGSYNLTDFT
Ga0049081_103351512	3300005581	Freshwater Lentic	MAQTTFSGPVTSKAGFNSDDTLTAADYTSGSFNLTDFTVRPAATWTGTVA
Ga0049084_101135752	3300005585	Freshwater Lentic	MAQTTFSGPVTSNAGFNSDDTLTATDLTSGGYNLTDFTVRPAATWTGTVAALVGAA
Ga0105736_11527722	3300007861	Estuary Water	MAQTTFSGPVTSNAGFNSDDTLTAADYTAGSYNLTDFTVRPAATWTGTV
Ga0108970_107013111	3300008055	Estuary	MAQTTFAGPVTSNAGFNSDDTLTAADYTSGSYNLTDFT
Ga0114363_10837742	3300008266	Freshwater, Plankton	MAQTTFAGPVTSNAGFNSDDTLTSADYTSGSFNLTDF
Ga0114364_10094831	3300008267	Freshwater, Plankton	LEKLGEYIMAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYAG
Ga0102860_11446421	3300009056	Estuarine	MAQTTFAGPVTSNAGFNSDDTLTAADYTSGSYNLTDFTVRPA
Ga0177922_104827011	3300013372	Freshwater	MAQTTFSGPVTSNAGFNSDDTLTAADYTSGSYNLTDFTVRPAATWTGTVA
Ga0181338_100014115	3300015050	Freshwater Lake	MGTTTFSGPVVSNAGFTSDDTLTASDLSTGAYNLTDFTVRPAANWSGTVAALVGAAN
Ga0181338_10059564	3300015050	Freshwater Lake	MGTTTFSGPVISDSGFSSDDTLTASDLSTGSFNLTDFTVRPAANWSGTVAALVGASNSR
Ga0181338_10323532	3300015050	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTVADYTSNSSYNLTDFTVRPAATWTG
Ga0181338_10599681	3300015050	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVNYVAGSYNLTDFTVRPASTWTGTGAALVGAANSRTAG
Ga0181350_10023109	3300017716	Freshwater Lake	MATTTFSGPVVSNAGFSSDDTLNSADLSTGSYNLTDFTVRPASTWTGTVAALVGAVN
Ga0181347_10040151	3300017722	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAATWTGTVAALV
Ga0181347_10213034	3300017722	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTATDLTTGSYNLTDFTVRPAAT
Ga0181347_10566251	3300017722	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVAGSYNLTDFTVRPAATWTGTV
Ga0181347_10613382	3300017722	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTAADYTSGSYNLTDFTVRPAATW
Ga0181347_11214961	3300017722	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVSGSYNLTDFTVRPA
Ga0181362_10316711	3300017723	Freshwater Lake	MGTTTFSGPVVSNAGFSSDDTLTAADLSSGSYNLTDFT
Ga0181362_11247331	3300017723	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTVAAVVGAV
Ga0181365_10305851	3300017736	Freshwater Lake	MAQTTFSGPVTSQNGCNSDDTLTAADYVAGSYNLTDFTVRPAATWTGTVAALVGAANS
Ga0181365_10744471	3300017736	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVAGSYNLTD
Ga0181365_11164471	3300017736	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVAGSYNLTDFTVRPAATWANT
Ga0181365_11316901	3300017736	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSTGSFNLTDF
Ga0181356_10176381	3300017761	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAATWTGTVAALVGAANSRTAGV
Ga0181356_10499813	3300017761	Freshwater Lake	MATTTFSGPVVSNAGFSSDDTLNSADLSTGSYNLTDFTVRPASTWTGTVA
Ga0181356_10917183	3300017761	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVAGSYNLTDFTVRPASTWTGTV
Ga0181356_12188192	3300017761	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTATDLSTGSYNLTDFTVRPAATWTGTVAALVGAANSR
Ga0181356_12437512	3300017761	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTVAAVVGAVN
Ga0181358_11238521	3300017774	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVSGSYNLTDFTV
Ga0181358_11546493	3300017774	Freshwater Lake	MGTTTFSGPVVSDSGFSSDDTLSASDLSTGSFNLTDFTVRPAANWAGTVAALVGAS
Ga0181357_12139191	3300017777	Freshwater Lake	MAQTTFAGPVTSNAGFNSDDTLTATDLTTGSYNLTDFT
Ga0181357_12555351	3300017777	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVSGSYNLTDFTVR
Ga0181357_13324711	3300017777	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLNATDLSTGSYNLTDFTVRPAATWAGTVAALVGAAN
Ga0181349_11836622	3300017778	Freshwater Lake	MAQTTFSGPVTSQAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTV
Ga0181349_12522761	3300017778	Freshwater Lake	MGQTTFSGPVTSNAGFNSDDTLTSADYTSGSYNLTD
Ga0181349_12622691	3300017778	Freshwater Lake	MAQTTFSGPVTSKAGFNSDDTLTTADYTSGSYNLTDFTVRPAAT
Ga0181349_12792191	3300017778	Freshwater Lake	MGTTTFSGPVVSNAGFTSDDTLNATDLATGAYNLTDFTVRPAANWSGTVAALVGASNSRTAGV
Ga0181346_10225145	3300017780	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAATWTGTVAAL
Ga0181346_13084542	3300017780	Freshwater Lake	MGTTTFSGPVVSNAGFTSDDTLNATDLATGAYNLTDFTVRPAANWSGTVAALVGAANSRT
Ga0181348_10011131	3300017784	Freshwater Lake	MGQTTFSGPVTSKAGFNSDDTLNSTDLALGAYNLTDFTVRPAATYTGTVAALVGAVNQR
Ga0181348_100187910	3300017784	Freshwater Lake	MATTTFSGPVVSNAGFSSDDTLNSADLSTGSYNLTDFTVRPASTWTGTVAALVGA
Ga0181348_11079573	3300017784	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVAGSYNLTDFTVR
Ga0181348_12006781	3300017784	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAATGTGTVAALVGAANSRT
Ga0181355_10656671	3300017785	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVAGSYNLTDFTVRPAATWANTVAALVGAANSR
Ga0181355_11415792	3300017785	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSTGSFNLTDFTVRPTSNW
Ga0181359_10549342	3300019784	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSTGSFNLTDFTVRPAATWTGTVLILL
Ga0181359_10907251	3300019784	Freshwater Lake	MGTTTFSGPVVSDSGFSSDDTLSASDLSTGSFNLTDFTVRPAANWAGTVAAL
Ga0181359_11191281	3300019784	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAATWTGTVAALVGA
Ga0181359_11314372	3300019784	Freshwater Lake	MAQTTFSGPVTSNAGFNSDETLTAADYVSGEYNLTDFTVRPAAS
Ga0181359_11805661	3300019784	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVAGSYNLTDFTV
Ga0181359_12342481	3300019784	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTATDLTTGSYNLTDFT
Ga0222712_103214381	3300021963	Estuarine Water	MAQTTFAGPVTSNAGFNSDDTLTASDLSTGSYNLTDFT
Ga0181354_10016091	3300022190	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSTGAFNLTDFTVRPAATYSG
Ga0181354_10160981	3300022190	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTAADYTSGSYNLTDFTVRPAATWTGTVAALVGAANSRTAGV
Ga0181354_10233801	3300022190	Freshwater Lake	MSTTTFSGPVVSGAGFTSDDTINASNLTSGSSFNLTDFTVRPTATYTGTVAALVGSV
Ga0181354_10399931	3300022190	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAATWTG
Ga0181354_11217891	3300022190	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTAADLSTGSYNLTDFTVRPASTWTGTVAALVGA
Ga0181354_11833892	3300022190	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVAGSYNLTDFT
Ga0181354_11992291	3300022190	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTLTAADYVAGSYNLTDFTVRPAATWTGTVAALVGAANSRTAG
Ga0181354_12158951	3300022190	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVAGSYNLT
Ga0181354_12376612	3300022190	Freshwater Lake	MGTTTFSGPVISDSGFSSDDTLNASDLSTGSFNLTDFTVRPAANWGGTVAALV
Ga0181354_12412832	3300022190	Freshwater Lake	MAQTTFSGPVTSQAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTVAA
Ga0181351_10257655	3300022407	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLNATDLSTGSYNLTDFTVRPAATWTGTVAA
Ga0181351_10426014	3300022407	Freshwater Lake	MAQTTFSGPVTSKGGFNSDDTLTSADYTSGSYNLTDFTVRPAAT
Ga0181351_10788101	3300022407	Freshwater Lake	MAQTTFAGPVTSNAGFNSDDTLTAADYVSGSYNLTDFTVRPAATWTGTVAA
Ga0181351_11850622	3300022407	Freshwater Lake	MAQTTFSGPVTSQNGFNSDDTPTTVDYVSGSYNLTDF
Ga0181351_12657102	3300022407	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTAADYVSGSYNLTDFTVRPASTWTGT
Ga0181351_12718482	3300022407	Freshwater Lake	MAQTTFSGPVTSKAGFNSDDTLTTADYTSGSYNLTDFTVRPAATWTGTVSALVGAAN
Ga0255204_10366121	3300027157	Freshwater	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLT
Ga0208800_10608201	3300027193	Estuarine	MAQTTFSGPVTSNVGFNSDDTLTSADYTSGSFNLTDFTVRPAATYAGTVAALVGAVNQRTAGVSG
Ga0255137_10060827	3300027375	Freshwater	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYS
Ga0208022_11135791	3300027418	Estuarine	MAQTTFAGPVTSNAGFNSDDTLTAADYVSGSFNLTD
Ga0209552_10212191	3300027563	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYAGTVAA
Ga0208951_11052011	3300027621	Freshwater Lentic	MAQTTFSGPVTSKAGFNSDDTLTAADYTSGSFNLTDFTVR
Ga0208951_11813771	3300027621	Freshwater Lentic	MAQTTFSGPVTSNNGFNSDDTLTAADYVSGSYNLTDFTVRPAATWTGTVAALVGA
Ga0208942_11786861	3300027627	Freshwater Lentic	MAQTTFSGPVTSNAGFNSDDTLTATDLTTGSYNLTDFTVRPAATWT
Ga0209356_10261074	3300027644	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGT
Ga0208960_10160221	3300027649	Freshwater Lentic	MAQTTFSGPVTSKAGFNSDDTLTAADYTSGSFNLTDFTVRPAATWTGTVAALVGAANHRTAGV
Ga0209357_11125321	3300027656	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTVAAVVG
Ga0209553_10538291	3300027688	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTVAAVVGA
Ga0209553_10645871	3300027688	Freshwater Lake	MSTTTFSGPVVSGAGFTSDDTINASNLTSGSSFNLTDFTVRPTATYTGTVAALV
Ga0209553_11950981	3300027688	Freshwater Lake	MAQTTFSGPVTSQAGFNSDDTLNATDLASGAFNLTDFTVRPAVTYTGTVAA
Ga0209553_12536742	3300027688	Freshwater Lake	MGTTTFSGPVVSNAGFSSDDTLTAADLSSGSYNLTDFTVRPAATW
Ga0209442_11417072	3300027732	Freshwater Lake	MGQTTFSGPVTSNAGFNSDDTLIAADYTSGSYNLTDFTVRPAATWTGTVSALVGAANS
Ga0209355_12903781	3300027744	Freshwater Lake	MAQTTFSGPVTSNAGFNSDETLTAADYVSGEYNLTDFTVRPAASWTGTVAALVGAANSRT
Ga0209354_103567541	3300027808	Freshwater Lake	MAQTTFSGPVTSNAGFNSDDTLTAADYTSGSYNLTDFTVRPAAT
Ga0209354_104337321	3300027808	Freshwater Lake	MAQTTFSGPVTSNNGFNSDDTLTAADYVSGSYNLT
Ga0307378_109296661	3300031566	Soil	MAQTTFSGPVTSNAGFNSDDTLTAADLSSGGFNLTNFTVRPAATYANTVA
Ga0307377_101790233	3300031673	Soil	MASTTFSGPVTSNAGFNSDDTLNSNDLSTGAFNLTNFTVRPAATYTGTVAALVGAVNQRTAG
Ga0307377_105497641	3300031673	Soil	MASTTFSGPVTSNAGFNSDDTLNSNDLSTGAFNLTNFTVRPAATYTGTVAALVG
Ga0315291_104124573	3300031707	Sediment	MAQTTFSGPVTSKAGFNSDDTLTATDLTTGSYNLTD
Ga0315291_114393672	3300031707	Sediment	MGQTTFSGPVTSKAGFNSDDTLDSADLASGSYNLADFTVRPAVTYTG
Ga0315293_100291481	3300031746	Sediment	MGQTTFSGPVTSKAGFNSDDTLDSADLASGSYNLADFTVRPAVTYTGTVAALVGAVNQRTAGVSGA
Ga0315293_102596601	3300031746	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLTDFTVRPAVTYTGTVAALVGAVNQRT
Ga0315293_108762131	3300031746	Sediment	MGQTTFSGPVTSKAGFNSDDTLNATDLASGSYNLADFTVRPAVTYTGTVAALVGAVNQRTAGVSGA
Ga0315907_106293711	3300031758	Freshwater	MAQTTFSGPVTSQNGFNSDDTPTTVDYVAGSYNLTDFTVRPASTWTGTVAALVGAANSRT
Ga0315288_115527542	3300031772	Sediment	MAQTTFSGPVTSKAGFNSDDTLTAADYVSGSYSLTDFTVRP
Ga0315288_117020371	3300031772	Sediment	MGQTTFSGPVTSKAGFNSDDTLDSADLASGSYNLADFTVRPAVTYTGTVAALVGA
Ga0315290_116853472	3300031834	Sediment	MGTTTFSGPVVSDSGFSSDDTLSASDLSTGSFNLTDFT
Ga0315285_102115183	3300031885	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLADFTVRPAVTYTGTVAALVGAVN
Ga0315285_103408012	3300031885	Sediment	MGQTTFSGPVTSKAGFNSDDTLNSTDLSTGSYNLADFTVRPAATY
Ga0315285_104036323	3300031885	Sediment	MGQTTFSGPVTSKAGFNSDDTLDSADLASGSYNLADFTVRPAVTYTGTVAALVGAVNQ
Ga0315294_103240913	3300031952	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLADFTVRPAVTYTGTVAALVGAVNQRTAGVSGA
Ga0315294_105826181	3300031952	Sediment	MGQTTFSGPVTSKAGFNSDDTLDSADLASGSYNLADFTVRPAVT
Ga0315294_114799672	3300031952	Sediment	MSTTTFSGPVVSGAGFTSDDTINASNLTSGSYNLADFTVRP
Ga0315284_125119851	3300032053	Sediment	MGQTTFSGPVTSKAGFNSDDTLNATDLASGSYNLADFTVRPAVT
Ga0315905_114844432	3300032092	Freshwater	MAQTTFSGPVTSQNGFNSDDTLTAADYVAGSYNLTDFTVRPAATWTGTVAALV
Ga0315902_103367003	3300032093	Freshwater	MAQTTFSGPVTSNAGFNSDDTLTSADLSSGGFNLTDFTVRPAATYSGTVAAVVGAVNQRT
Ga0315277_111279212	3300032118	Sediment	MAQTTFAGPVTSNAGFNSDDTLTAADYVSGSYNLTDFTVRPAATWTGTVSALVGAANSRT
Ga0315292_110423311	3300032143	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLTDFTVRPA
Ga0315281_111412262	3300032163	Sediment	MAQTTFSGPVTSKAGFNSDDTLTAADYTSGSYNLTDFTVRPAATWTGTVA
Ga0315276_102212424	3300032177	Sediment	MSTTTFTGPVVSGAGFTSDDTLDSADLASGSYNLADFTVRPAATYTGTVAALVGAVNQRT
Ga0315276_121884652	3300032177	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLADFTVRPAV
Ga0315270_101337133	3300032275	Sediment	MATTTFSGPVVSGAGFNSDDTLNSSDLASGSYNLTDFT
Ga0315286_114883112	3300032342	Sediment	MGTTTFSGPVVSNAGFTSDDTLNATDLATGAYNLTDFTVRPAANWSGTVAALVGA
Ga0315275_103442931	3300032401	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLADFTVRPAVTYTGTV
Ga0315273_104177773	3300032516	Sediment	MAQTTFSGPVTSQAGFNSDDTLNATDLASGSYNLADFTVRPAVTYTGTVAAL
Ga0334722_100544061	3300033233	Sediment	MKENIMSTTTFTGPVVSGAGFNSDDTLDSADLASGSYNLADF
Ga0334722_108753992	3300033233	Sediment	MAQTTFSGPVTSKAGFNSDDTLTAADYTSGSYNLTDFTVRPAATWTGTVSALVGAANSRTAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063347

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences