Metagenome Family F063120

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063120
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	92 residues
Representative Sequence	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL
Number of Associated Samples	67
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	26.15 %
% of genes from short scaffolds (< 2000 bps)	79.23 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.538 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.923 % of family members)
Environment Ontology (ENVO)	Unclassified (33.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.18% β-sheet: 11.76% Coil/Unstructured: 47.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.55: Transcriptional regulator Rrf2	d1xd7a_	1xd7	0.53795
a.4.5.43: RecQ helicase DNA-binding domain-like	d1oywa1	1oyw	0.52719
a.199.1.1: YgfB-like	d1izma_	1izm	0.52547
a.4.1.6: DNA-binding domain of rap1	d1igna1	1ign	0.52238
a.4.6.2: GerE-like (LuxR/UhpA family of transcriptional regulators)	d1fsea_	1fse	0.51893

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00004	AAA	4.62
PF03737	RraA-like	3.08
PF07731	Cu-oxidase_2	3.08
PF13557	Phenol_MetA_deg	3.08
PF01258	zf-dskA_traR	2.31
PF00528	BPD_transp_1	1.54
PF04828	GFA	1.54
PF00296	Bac_luciferase	1.54
PF12146	Hydrolase_4	1.54
PF08309	LVIVD	1.54
PF13519	VWA_2	1.54
PF00719	Pyrophosphatase	1.54
PF01197	Ribosomal_L31	0.77
PF02653	BPD_transp_2	0.77
PF03466	LysR_substrate	0.77
PF07883	Cupin_2	0.77
PF00924	MS_channel	0.77
PF00392	GntR	0.77
PF02036	SCP2	0.77
PF00596	Aldolase_II	0.77
PF09084	NMT1	0.77
PF00080	Sod_Cu	0.77
PF00196	GerE	0.77
PF02585	PIG-L	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0684	RNA degradosome component RraA (regulator of RNase E activity)	Translation, ribosomal structure and biogenesis [J]	3.08
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	3.08
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	2.31
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	1.54
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.54
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.54
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	1.54
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	0.77
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.77
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.77
COG2032	Cu/Zn superoxide dismutase	Inorganic ion transport and metabolism [P]	0.77
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.77
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.77
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.54 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.54 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.54 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.77 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.54 %
Unclassified	root	N/A	28.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	47.69 %
Unclassified	root	N/A	28.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.54 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.77 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	41.54 %
Unclassified	root	N/A	28.46 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.08 %
Alcanivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae	0.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	40.77 %
Unclassified	root	N/A	28.46 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.08 %
Alcanivorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	40.77 %
Unclassified	root	N/A	28.46 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.08 %
unclassified Alcanivorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	40.77 %
Unclassified	root	N/A	28.46 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.08 %
Alcanivorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp.	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1903987	Not Available	606	Open in IMG/M
3300000559\|F14TC_103895377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	516	Open in IMG/M
3300001431\|F14TB_101614011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	549	Open in IMG/M
3300003659\|JGI25404J52841_10016837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1585	Open in IMG/M
3300003659\|JGI25404J52841_10028377	Not Available	1201	Open in IMG/M
3300005093\|Ga0062594_100659161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	933	Open in IMG/M
3300005093\|Ga0062594_101282502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	733	Open in IMG/M
3300005332\|Ga0066388_100507809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1840	Open in IMG/M
3300005332\|Ga0066388_100702251	All Organisms → cellular organisms → Bacteria → Proteobacteria	1618	Open in IMG/M
3300005332\|Ga0066388_100793732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1540	Open in IMG/M
3300005332\|Ga0066388_104509218	Not Available	709	Open in IMG/M
3300005341\|Ga0070691_10030846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2512	Open in IMG/M
3300005341\|Ga0070691_10052014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1958	Open in IMG/M
3300005341\|Ga0070691_10098282	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300005347\|Ga0070668_100318208	All Organisms → cellular organisms → Bacteria → Proteobacteria	1309	Open in IMG/M
3300005406\|Ga0070703_10408945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	592	Open in IMG/M
3300005441\|Ga0070700_100301707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1169	Open in IMG/M
3300005441\|Ga0070700_101409518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	589	Open in IMG/M
3300005536\|Ga0070697_100356966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1263	Open in IMG/M
3300005713\|Ga0066905_100014168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3971	Open in IMG/M
3300005713\|Ga0066905_100029026	All Organisms → cellular organisms → Bacteria → Proteobacteria	3103	Open in IMG/M
3300005713\|Ga0066905_100112563	All Organisms → cellular organisms → Bacteria → Proteobacteria	1878	Open in IMG/M
3300005713\|Ga0066905_100133679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1756	Open in IMG/M
3300005713\|Ga0066905_100176791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1570	Open in IMG/M
3300005713\|Ga0066905_100251447	All Organisms → cellular organisms → Bacteria → Proteobacteria	1359	Open in IMG/M
3300005713\|Ga0066905_100640664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	905	Open in IMG/M
3300005713\|Ga0066905_101050532	Not Available	721	Open in IMG/M
3300005713\|Ga0066905_101222073	Not Available	673	Open in IMG/M
3300005713\|Ga0066905_101419709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	629	Open in IMG/M
3300005764\|Ga0066903_100301333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2536	Open in IMG/M
3300005764\|Ga0066903_100352747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2379	Open in IMG/M
3300005764\|Ga0066903_100432420	All Organisms → cellular organisms → Bacteria → Proteobacteria	2187	Open in IMG/M
3300005937\|Ga0081455_10000052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	123035	Open in IMG/M
3300005937\|Ga0081455_10007647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11350	Open in IMG/M
3300005937\|Ga0081455_10314170	Not Available	1119	Open in IMG/M
3300005937\|Ga0081455_10951220	Not Available	533	Open in IMG/M
3300005983\|Ga0081540_1000039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	137196	Open in IMG/M
3300005983\|Ga0081540_1001108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23889	Open in IMG/M
3300005983\|Ga0081540_1128009	Not Available	1042	Open in IMG/M
3300006163\|Ga0070715_10285874	Not Available	876	Open in IMG/M
3300006196\|Ga0075422_10044452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1592	Open in IMG/M
3300006755\|Ga0079222_10263628	Not Available	1094	Open in IMG/M
3300006755\|Ga0079222_11167467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	685	Open in IMG/M
3300006844\|Ga0075428_100095703	All Organisms → cellular organisms → Bacteria → Proteobacteria	3237	Open in IMG/M
3300006844\|Ga0075428_100231430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1994	Open in IMG/M
3300006844\|Ga0075428_101845228	Not Available	629	Open in IMG/M
3300006847\|Ga0075431_100820070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp.	903	Open in IMG/M
3300006852\|Ga0075433_10014197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6502	Open in IMG/M
3300006854\|Ga0075425_102099491	Not Available	631	Open in IMG/M
3300006871\|Ga0075434_100467012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1283	Open in IMG/M
3300006914\|Ga0075436_100799085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	702	Open in IMG/M
3300006954\|Ga0079219_10028023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2188	Open in IMG/M
3300009094\|Ga0111539_10247810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2074	Open in IMG/M
3300009094\|Ga0111539_10627320	Not Available	1252	Open in IMG/M
3300009094\|Ga0111539_11008379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	968	Open in IMG/M
3300009094\|Ga0111539_12051955	Not Available	663	Open in IMG/M
3300009094\|Ga0111539_13021026	Not Available	543	Open in IMG/M
3300009100\|Ga0075418_10047339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4622	Open in IMG/M
3300009146\|Ga0105091_10590976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	572	Open in IMG/M
3300009147\|Ga0114129_10162662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3047	Open in IMG/M
3300009156\|Ga0111538_10476986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1581	Open in IMG/M
3300009156\|Ga0111538_11202450	Not Available	958	Open in IMG/M
3300009156\|Ga0111538_14017270	Not Available	508	Open in IMG/M
3300009162\|Ga0075423_12052702	Not Available	619	Open in IMG/M
3300010043\|Ga0126380_10814279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	766	Open in IMG/M
3300010047\|Ga0126382_10073843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2102	Open in IMG/M
3300010047\|Ga0126382_12177584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	533	Open in IMG/M
3300010362\|Ga0126377_10147871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2204	Open in IMG/M
3300010362\|Ga0126377_10529315	Not Available	1214	Open in IMG/M
3300010362\|Ga0126377_10669167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1088	Open in IMG/M
3300010371\|Ga0134125_10305820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1765	Open in IMG/M
3300010371\|Ga0134125_12340344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	581	Open in IMG/M
3300010371\|Ga0134125_12355898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	579	Open in IMG/M
3300010396\|Ga0134126_12901771	Not Available	519	Open in IMG/M
3300010400\|Ga0134122_10067524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2773	Open in IMG/M
3300010400\|Ga0134122_10112531	Not Available	2170	Open in IMG/M
3300010400\|Ga0134122_11186614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	763	Open in IMG/M
3300010403\|Ga0134123_11226857	Not Available	782	Open in IMG/M
3300012948\|Ga0126375_10583887	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300012948\|Ga0126375_10609835	Not Available	835	Open in IMG/M
3300012948\|Ga0126375_10841762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	731	Open in IMG/M
3300012948\|Ga0126375_11553466	Not Available	568	Open in IMG/M
3300015371\|Ga0132258_10015531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16301	Open in IMG/M
3300015371\|Ga0132258_10077804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7722	Open in IMG/M
3300015371\|Ga0132258_11997933	Not Available	1459	Open in IMG/M
3300015372\|Ga0132256_100321820	All Organisms → cellular organisms → Bacteria → Proteobacteria	1635	Open in IMG/M
3300015372\|Ga0132256_100831963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1039	Open in IMG/M
3300015374\|Ga0132255_105146863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	554	Open in IMG/M
3300015374\|Ga0132255_105865803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	520	Open in IMG/M
3300017792\|Ga0163161_10960953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	727	Open in IMG/M
3300025905\|Ga0207685_10225025	Not Available	894	Open in IMG/M
3300025934\|Ga0207686_11471113	Not Available	561	Open in IMG/M
3300025938\|Ga0207704_10588517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	909	Open in IMG/M
3300026075\|Ga0207708_10020198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5023	Open in IMG/M
3300026075\|Ga0207708_10100036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2243	Open in IMG/M
3300026118\|Ga0207675_100392346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1367	Open in IMG/M
3300027675\|Ga0209077_1034040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1384	Open in IMG/M
3300027787\|Ga0209074_10380165	Not Available	586	Open in IMG/M
3300027907\|Ga0207428_10030543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4454	Open in IMG/M
3300027907\|Ga0207428_11120752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	549	Open in IMG/M
3300031184\|Ga0307499_10022063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1378	Open in IMG/M
3300031198\|Ga0307500_10161131	Not Available	647	Open in IMG/M
3300031198\|Ga0307500_10237931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	557	Open in IMG/M
3300031547\|Ga0310887_10343913	Not Available	863	Open in IMG/M
3300031562\|Ga0310886_10671215	Not Available	643	Open in IMG/M
3300031720\|Ga0307469_10226697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1483	Open in IMG/M
3300031720\|Ga0307469_11808154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	590	Open in IMG/M
3300031740\|Ga0307468_100006124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4244	Open in IMG/M
3300031740\|Ga0307468_100023632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2779	Open in IMG/M
3300031740\|Ga0307468_100148794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1499	Open in IMG/M
3300031740\|Ga0307468_100667682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	862	Open in IMG/M
3300031820\|Ga0307473_11528799	Not Available	507	Open in IMG/M
3300031858\|Ga0310892_10403361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	891	Open in IMG/M
3300031858\|Ga0310892_10698771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	695	Open in IMG/M
3300031858\|Ga0310892_11289958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	522	Open in IMG/M
3300031908\|Ga0310900_11288818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	610	Open in IMG/M
3300031943\|Ga0310885_10449125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	695	Open in IMG/M
3300032000\|Ga0310903_10811680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	512	Open in IMG/M
3300032013\|Ga0310906_10668540	Not Available	722	Open in IMG/M
3300032174\|Ga0307470_10395886	Not Available	975	Open in IMG/M
3300032174\|Ga0307470_10564015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	844	Open in IMG/M
3300032174\|Ga0307470_10617568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	813	Open in IMG/M
3300032174\|Ga0307470_10771797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	741	Open in IMG/M
3300032180\|Ga0307471_100762321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1134	Open in IMG/M
3300032180\|Ga0307471_101893080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	746	Open in IMG/M
3300032180\|Ga0307471_103250254	Not Available	576	Open in IMG/M
3300032180\|Ga0307471_103537787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	553	Open in IMG/M
3300032205\|Ga0307472_100342132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1224	Open in IMG/M
3300032205\|Ga0307472_100398063	Not Available	1151	Open in IMG/M
3300034818\|Ga0373950_0131523	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.15%
Host-Associated	Host-Associated	33.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.62%
Plants	Host-Associated → Plants	33.85%
Aquatic	Environmental → Aquatic	1.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.08%
Freshwater	Environmental → Aquatic → Freshwater	1.54%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.54%
Loam	Environmental → Terrestrial → Soil → Loam	23.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.08%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.54%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.08%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.54%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.77%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	13.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	6.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.15%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_19039871	3300000033	Soil	MKRERPADDIRRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGIYYLNALTARALSTEQELAELGAVWN
F14TC_1038953771	3300000559	Soil	MKRERAADDMRRWAIRARLLGMSTREIALSLERNHHTIKRYLCNCGGVMNGSYHLNRLAAKALFTEDELRQLGAVWNGRYWVGPGRGISET*
F14TB_1016140111	3300001431	Soil	MKRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFSESELMQLGAVWNGRCWVGPGRIPRGDASDI*
JGI25404J52841_100168371	3300003659	Tabebuia Heterophylla Rhizosphere	MKRQRPADDIRRRAIKARLKGMPSREIARSLERSHDTIKGYLGSCGVTIKGTYYLNALAAEALFNQSELLELGAVWNGRCWVGPGHT
JGI25404J52841_100283771	3300003659	Tabebuia Heterophylla Rhizosphere	MKRERPADDIRRWAIKARLQGMSSGEIARCLDRSQHTIKTYLGSCGGMSDGRYHLNALAARALFSEDELVKLGA
Ga0062594_1006591613	3300005093	Soil	RRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVSPSHEVATELSVARRLQA*
Ga0062594_1012825021	3300005093	Soil	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRFKRA*
Ga0066388_1005078094	3300005332	Tropical Forest Soil	MKRERPADDARRTAIIARLRGTPTLEIARCLDRKHETIKGYLSSCGTTIDGAYHLNSLIAKALFTEQELLEVGAVWDGRSWVGHGRNRSTT*
Ga0066388_1007022511	3300005332	Tropical Forest Soil	MRRMRPADEIRRWAIKARLQGVPSCEIAQQIGRSHNTIKGYLSSCGGVIEGAYHLNALTARALFTEQELVELGAVWDGRCWVGPGRHRSEV*
Ga0066388_1007937321	3300005332	Tropical Forest Soil	MKRERPADDIKRLVIKARLQGMPSHRIAQHLDRSNSTIKNYLTNCGGVREGRYHLNALIARALFTEQELVELGAVWNGRSWVGTAGNNGGL*
Ga0066388_1045092181	3300005332	Tropical Forest Soil	MKRERPADEMRRWAIKARLQGMPSRDIAQQLGRSHETIKGYLGSCGGTIDGTYHLNVLAARALFTEEELIDMGAVWNGRTWVGPGRSQSEA*
Ga0070691_100308463	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MDIWRCEDWMKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVSPSHEVATELSVARRLQA*
Ga0070691_100520143	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADEIRRRAIKARLQGVPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFTEKELMELGAVWNGRCWVGPGRNLSET*
Ga0070691_100982822	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGYARHRSTS*
Ga0070668_1003182081	3300005347	Switchgrass Rhizosphere	AIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGYARHRSTS*
Ga0070703_104089451	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVGPSHEVATELSVARRLQA*
Ga0070700_1003017071	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVSPSHEVATELSVARRLQA*
Ga0070700_1014095181	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRFKRG*
Ga0070697_1003569661	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVGPSHEVA
Ga0066905_1000141682	3300005713	Tropical Forest Soil	MGGPPNSGASMKRDRPADDIRRRAIKARLQGLPTREIARSLDRSHDTIKGYLGSCGATVKSIYYLNALAAEALFTQNELRELGAVWNGRCWVGRGEASPQHPA*
Ga0066905_1000290265	3300005713	Tropical Forest Soil	MKRERPADDIRRWAIKARLQGMPSREIALSLDRSHETIKGYLGSCGGTVDGVYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV*
Ga0066905_1001125631	3300005713	Tropical Forest Soil	MRRERPADEIRRWAIKARLQGVPSCEIAQQLGRSHNTIKGYLSSCGGVIEGAYHLNALIARALFTEQELVELGAVWNGRCWVGPGRHRSEV*
Ga0066905_1001336793	3300005713	Tropical Forest Soil	MAAAGSVAVEGNMKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETVKGYLSSCGTTIAGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGRQARNRSTT*
Ga0066905_1001767912	3300005713	Tropical Forest Soil	MKRERPADEIRRRAIKARLQGVPSREIARRLKRSHDTIKGYLGGCGATIKGTYYLNALAAEALFTEKELMELGAVWNGRCWVGPGRNLPGRNLFET*
Ga0066905_1002514473	3300005713	Tropical Forest Soil	MKRERPADDIRRWAIKARLQGISSREIAQSLDRSHETIKGYLGSCGGTVEGAYHLNALIARALFTEQELVELGAVWNGRCWVGPGRNKRDV*
Ga0066905_1006406642	3300005713	Tropical Forest Soil	MKRDRPADDLRRRAIKARLQGIPSREIARCLARSHDTIKGYLGGCGATIKGTYYLNALAAEALFTQGELLELGAVWDGRCWVGPGRPASKA*
Ga0066905_1010505321	3300005713	Tropical Forest Soil	MKRERPADDARRTAIIARLRGTPTLEIARCLDRKHETIKGYLSSCGTTIDGAYHLNSLIAKALFSEQELLEVGAVWDGRSWVGHGRNRSPT*
Ga0066905_1012220732	3300005713	Tropical Forest Soil	MKRERPADEIRRRAIKARLKGLPSREIARRLERSHDTIKGYLGSCGVTIKGTYYLNALAAEALFSESELLDLGAVWDGRCWVGPGRIPRNASSDF*
Ga0066905_1014197091	3300005713	Tropical Forest Soil	VRPRDPGSAEAWMKRKRPADDNRRRAIKARLQGMPSREIARRLARSHDTIKGYLGGCGATIRGTYYLNALAAEALFTENELMELGAVWDGRCWVGPGHNRRGDVTEI*
Ga0066903_1003013333	3300005764	Tropical Forest Soil	MKRDRPADAIRRRAIKARLQGLPSREIARGLARSHDTIKGYLGSCGATIKGTYYLNALAAEALFTQDELRELGAVWNGRCWVGRGEAFPHDPA*
Ga0066903_1003527471	3300005764	Tropical Forest Soil	MKRERPADDIRRWAIKARLQGMPSREIALNLDRSHETIKGYLGSCGGTVEGVYYLNALTARALFTEQELIELGAVWNGRCWVGPGRSKREV*
Ga0066903_1004324202	3300005764	Tropical Forest Soil	MRRIRPADEIRRWAIKARLQGVPSCEIAQQIGRSHNTIKGYLSSCGGVIEGAYHLNALTARALFTEQELVELGAVWDGRCWVGPGRHRSEV*
Ga0081455_1000005261	3300005937	Tabebuia Heterophylla Rhizosphere	MKRDRPADALRRRAIKARLQGISSREIARCLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFTQGELLELGAVWDGRCWVGPGRPASKA*
Ga0081455_100076473	3300005937	Tabebuia Heterophylla Rhizosphere	MKRERPADDIRRWAIKARLQGMPSREIALSLDRSHETIKGYLGSCGGTIEGTYYLNALTAKALFSEQELLELGAVWNGRCWVGPGCSKREV*
Ga0081455_103141701	3300005937	Tabebuia Heterophylla Rhizosphere	MKRERPADDIRRWAIKARLQGIPSREIAQSLDRSHETIKGYLGSCGGTIEGTYYLNALTAKALFSEQELLALGAVW
Ga0081455_109512201	3300005937	Tabebuia Heterophylla Rhizosphere	MKRERPADDARRTVIIARLRGTPTLEIARSLDRKHETIKGYLSSCGTTIDGAYHLNSLTAKALFTEQELLDVGAVWDGRSWVGLGRNRSIS*
Ga0081540_100003979	3300005983	Tabebuia Heterophylla Rhizosphere	MKRERPADDIRRWAIKARLQGMSSGEIARCLDRSQHTIKTYLGSCGGMSDGRYHLNALAARALFSEDELVKLGAVWNGRNWVGPGRSSSEV*
Ga0081540_100110810	3300005983	Tabebuia Heterophylla Rhizosphere	MKRQRPADDIRRRAIKARLKGMPSREIARSLERSHDTIKGYLGSCGVTIKGTYYLNALAAEALFNQSELLELGAVWNGRCWVGPGHTSPGDASDN*
Ga0081540_11280091	3300005983	Tabebuia Heterophylla Rhizosphere	MRRERPADDARRTAIMARLRGTPTLEIARCLDRKHETIKGYLSSCGTTIGGTYHLNSLIAKALFTEQELLDAGAVWDGRSWVGHARHHS
Ga0070715_102858742	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LRGWQAREGSMKRERPADDARRTAIIARLKGTPTLEIARRLERKHETIKGYLSSCGTTIAGAYHLNSLIAKALFTEKELLDVGATWDGRSWVGRDRSRS*
Ga0075422_100444523	3300006196	Populus Rhizosphere	VGTRTFVLEGRMKRERPADDIRRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGTYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV*
Ga0079222_102636282	3300006755	Agricultural Soil	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFSEQELLDVGAVWDGRSWVGHARKGSTS*
Ga0079222_111674671	3300006755	Agricultural Soil	MRRERPADDIRRWAIKARLQGVSSREIAQNLDRSHETIKGYLGSCGGTIEGTYYLNALTARALFSEQELVELGAVWNGRCWVGPGRNKRES*
Ga0075428_1000957034	3300006844	Populus Rhizosphere	MKRERPADDIRRWAIKARLQGIPSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVDLGAVWNGRCWVGPGRNKREL*
Ga0075428_1002314304	3300006844	Populus Rhizosphere	MKRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFSESELMQLGAVWNGRCWVGPGRIPRGDASDS*
Ga0075428_1018452281	3300006844	Populus Rhizosphere	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDIGAVWDGRSWVGLGRNRSTT*
Ga0075431_1008200703	3300006847	Populus Rhizosphere	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHGRNR*
Ga0075433_100141974	3300006852	Populus Rhizosphere	MKRERPADDIRRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGTYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV*
Ga0075425_1020994911	3300006854	Populus Rhizosphere	MRRERPADDIRRWAIKARLQGVSSREIAQNLDRSHETIKGYLGSCGGTIEGTYYLNALTARALFSEQELVELGAVW
Ga0075434_1004670122	3300006871	Populus Rhizosphere	MKRERPADEIRRRAIKARLQGVPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFTAKELMELGAVWNGRCWVGPGRNLSET*
Ga0075436_1007990852	3300006914	Populus Rhizosphere	RRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGTYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV*
Ga0079219_100280231	3300006954	Agricultural Soil	MKRERPADEIRRWAIKARLQGMPSGEIAKHLDRSNHTNKGYLSNCGGVIEGTYYLNALAARALFSEDELTDLGATWNGRCWVGPGRNPSEL*
Ga0111539_102478103	3300009094	Populus Rhizosphere	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFSEQELLDVGAVWNGRSWVGHARSRSTS*
Ga0111539_106273202	3300009094	Populus Rhizosphere	MKRERPADDARRTAIMARLRGTPTLEIARCLDRKHETIKGYLSSCGTTIDGAYHLNSLIAKALFSEQELLDAGAVWDGRSWVGHARHRPTS*
Ga0111539_110083792	3300009094	Populus Rhizosphere	LRQNRERGRRRNGVFEAKMKRERPADDIRRWAIRARLQGVSSREIAQSLERSHETIKGYLGSCGGTIEGTYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKRES*
Ga0111539_120519552	3300009094	Populus Rhizosphere	MRRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYYLNALAAEALFSEHELTEMGAIWNGRCWVGPGRIARGGAAAI*
Ga0111539_130210261	3300009094	Populus Rhizosphere	MRGSLKRFEGRMKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGTYHLNALTARALFTEQELVELGAVWNGR
Ga0075418_100473393	3300009100	Populus Rhizosphere	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVDLGAVWNGRCWVGPGRNKREL*
Ga0105091_105909761	3300009146	Freshwater Sediment	MKRERPADEIRRLAIKARLRGVPSREIAQSLDRSHETIKGYLSSCGGMVDGAYHLNALAADALFTEQELRELGAVWNGRGWVGPGRHQPEV*
Ga0114129_101626621	3300009147	Populus Rhizosphere	RRSVFEGKMKRERPADDIRRWAIKARLQGIPSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVDLGAVWNGRCWVGPGRNKREL*
Ga0111538_104769863	3300009156	Populus Rhizosphere	MRGSLKRFEGRMKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGTYHLNALTARALFTEQELVELGAVWNGRCWVGPGRFKRA*
Ga0111538_112024501	3300009156	Populus Rhizosphere	MKRERPADDARRTAIMARLRGTPTLEIARCLDRKHETIKGYLSSCGTTIDGAYHLNSLIAKALFTEQELLDAGAVWDGRSWVGHARHRPTS*
Ga0111538_140172701	3300009156	Populus Rhizosphere	MRRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYYLNALAAEALFSEHELTEMGAIWNGRCWVGPGRIPRGGAAAI*
Ga0075423_120527021	3300009162	Populus Rhizosphere	RRTAIMARLRSTPTLELARSLDPTTQTIKGYLSSCGTTIDGAYHLNSLIAKALFTEQELMDAGAVWDGRSWVGHARHRPTS*
Ga0126380_108142791	3300010043	Tropical Forest Soil	MRRERPADEIRRWAIKARLQGVPSGEIAQQLGRSHNTIKGYLSSCGGVIEGAYHLNALIARALFTEQELVELSAVWDGRCW
Ga0126382_100738431	3300010047	Tropical Forest Soil	MRRERPADEIRRWAIKARLQGVPSCEIAQQLGRSHNTIKGYLSSCGGVIEGAYHLNALIARALFSEQELVELGAVWNGRCWVGPGRHRSEV*
Ga0126382_121775842	3300010047	Tropical Forest Soil	PADEIRRWAIKARLQGVPSCEIAQQIGRSHNTIKGYLSSCGGVIEGAYHLNALTARALFTEQELVELGAVWDGRCWVGPGRHRSEV*
Ga0126377_101478711	3300010362	Tropical Forest Soil	MKRQRPADDIRRWVIKARLQGISSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALIARALFTEQELVELGAVWNGRSWVGPGRNKREF*
Ga0126377_105293152	3300010362	Tropical Forest Soil	MKRERPADDARRTAIIARLRGTPTLEIARCLDRKHETVKGYLSSCGTTIAGTYHLNSLIAKALFTEQELLDVGAVWDGRSWVGRHARNRLAP*
Ga0126377_106691673	3300010362	Tropical Forest Soil	MRRERPADEIRRWAIKARLQGVPSCEIAQQLGRSHNTIKGYLSSCGGVIEGAYHLNALIARALFTEQELVELGAVWDGRCWVGPGRDRSEV*
Ga0134125_103058202	3300010371	Terrestrial Soil	MDIWRCEDWMKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVGPSHEVATELSVARRLQA*
Ga0134125_123403441	3300010371	Terrestrial Soil	MKRERPADDLRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYHLNALAAEALFSESELMELGAVWNGRCWVGPGRIPRGDASDSAA*
Ga0134125_123558981	3300010371	Terrestrial Soil	MKRERPADEIRRWAIKARLQGMPSREIAQSLDRSHETIKGYLGCCGGTIEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL*
Ga0134126_129017711	3300010396	Terrestrial Soil	MKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHGRNRSTT*
Ga0134122_100675241	3300010400	Terrestrial Soil	PADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRFKRA*
Ga0134122_101125312	3300010400	Terrestrial Soil	MKRERPADDARRTAIIERLRGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHGRNRSTT*
Ga0134122_111866141	3300010400	Terrestrial Soil	CEDWMKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVGPSHEVATELSVARRLQA*
Ga0134123_112268571	3300010403	Terrestrial Soil	MKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHARHRSAS*
Ga0126375_105838871	3300012948	Tropical Forest Soil	MRRVRPADEIRRWAIKARLQGVPSCEIAQQLGRSHNTIKGYLSSCGGVIEGAYHLNALIARALFTEQELVELGAVWN
Ga0126375_106098351	3300012948	Tropical Forest Soil	MKRDRPADDIRRRAIKARLQGLPTREIARSLDRSHDTIKGYLGSCGATVKSIYYLNALAAEALFTQNELRELGAVWNGRCWVGRGEASPQDPA*
Ga0126375_108417621	3300012948	Tropical Forest Soil	MKRERPADDIRRWAIKARLQGISSREIAQSLDRSHETIKGYLGSCGGTVEGAYHLNALIARALFTEQELVELGAVWNGRCWVGPGRNKRES*
Ga0126375_115534661	3300012948	Tropical Forest Soil	EGNMKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETVKGYLSSCGTTIAGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGRQARNRSTT*
Ga0132258_1001553112	3300015371	Arabidopsis Rhizosphere	MKRERPADDIRRWAIKARLQGISSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL*
Ga0132258_100778045	3300015371	Arabidopsis Rhizosphere	MKRERPADDIRRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGIYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV*
Ga0132258_119979332	3300015371	Arabidopsis Rhizosphere	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHARNRSTS*
Ga0132256_1003218203	3300015372	Arabidopsis Rhizosphere	VSQTMKRQRPADEIRRWAIRARLRGMPIREIAVRVDRSYMTIKGYLRDCGGTVGGVFYLNRLTATALFTEQELLEMGAVWNGRCWVGPGHGWQSDHPS*
Ga0132256_1008319632	3300015372	Arabidopsis Rhizosphere	RRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGIYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV*
Ga0132255_1051468631	3300015374	Arabidopsis Rhizosphere	MKRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYYLNALAAEALFSENELTELGAVWNGRAWVGPGRIRRGGAAELS*
Ga0132255_1058658031	3300015374	Arabidopsis Rhizosphere	VDRKGVFEAKMKRERPADDIRRWAIKARLQGVSSREIAQSLDRSHETIKGYLGSCGGTVEGTYHLNALTARALFSEQELVELGAVWNGRCWVGPGRNKRDS*
Ga0163161_109609532	3300017792	Switchgrass Rhizosphere	MKRERPADEIRRRAIKARLQGVPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFTEKELMELGAVWNGRCWVGPGRNLSET
Ga0207685_102250252	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LRGWQAREGSMKRERPADDARRTAIIARLKGTPTLEIARRLERKHETIKGYLSSCGTTIAGAYHLNSLIAKALFTEKELLDVGATWDGRSWVGRDRSRS
Ga0207686_114711131	3300025934	Miscanthus Rhizosphere	MKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGYARHRSTS
Ga0207704_105885171	3300025938	Miscanthus Rhizosphere	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRFKRA
Ga0207708_100201986	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDIIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVSPSHEVATELSVARRLQA
Ga0207708_101000361	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVDGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRFKRG
Ga0207675_1003923463	3300026118	Switchgrass Rhizosphere	MKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVSPSHEVATELSVARRLQA
Ga0209077_10340401	3300027675	Freshwater Sediment	MKRERPADNFRRRAISARLLGMSPREIALRLDRKENTIKGYLSRCGGVINGSYHLNRLAAQALFTEDELMQLGAVLNGRYWMGPGRDRAGSDW
Ga0209074_103801651	3300027787	Agricultural Soil	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFSEQELLDVGAVWDGRSWVGHARKGSTS
Ga0207428_100305432	3300027907	Populus Rhizosphere	MKRERPADDIRRWAIKARLQGVPSREIAHSLERSHETIKGYLGSCGGTVEGIYYLNALTARALFTEQELVELGAVWNGRCWVGPGRSKREV
Ga0207428_111207521	3300027907	Populus Rhizosphere	MKRERPADDIRRWAIRARLQGVSSREIAQSLERSHETIKGYLGSCGGTIEGTYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKRES
Ga0307499_100220631	3300031184	Soil	MRRKRPADDTRRRAIKARLQGMPSREIARRLERSPDTIKGYLGGCGATIKGIYYLNALVAEALFSETELMELGAVWNGRHWVGPGRNTRGDASEI
Ga0307500_101611311	3300031198	Soil	MKRERPADDARRTAIIERLRGTSTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLEAGAVWDGRSWVGHARNRSTT
Ga0307500_102379312	3300031198	Soil	MRRKRPADDTRRRAIKARLQGMPSREIARRLERSPDTIKGYLGGCGATIKGIYYLNALVAEALFSESELMELGAVWNGRHWVGPGRNTRGDASEI
Ga0310887_103439131	3300031547	Soil	MKRQRPADEIRRWAIRARLRGMPIREIAVRVDRSYMTIKGYLRDCGGTVGGVFYLNRLTATALFTEQELLEMGAVWNGRCWVGPGHGWQSDHPS
Ga0310886_106712151	3300031562	Soil	MKRQRPADEIRRWAIRARLRGMPIREIAVRVDRSYMTIKGYLRDCGGTVGGVFYLNRLTATALFTEQELLEMRAGCNGSCWVGPGGNFSSGLSL
Ga0307469_102266972	3300031720	Hardwood Forest Soil	MKRERPADDIRRWAIKARLQGVSSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL
Ga0307469_118081541	3300031720	Hardwood Forest Soil	MKRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYYLNALAAEALFSESELMQLGAVWNGRCWVGPGRIPRGDAPDI
Ga0307468_1000061246	3300031740	Hardwood Forest Soil	MKRERPADDIRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYYLNALAAEALFSESELMQLGAVWNGRCWVGPGRIPR
Ga0307468_1000236321	3300031740	Hardwood Forest Soil	MKRERPADDARRTAIIERLRGTPTLEIARCLDRNHETIKGYLSSCGTTIAGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHGRNR
Ga0307468_1001487942	3300031740	Hardwood Forest Soil	MKRERPADEMRRWAVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVGPSHEVATELSVARRLQA
Ga0307468_1006676821	3300031740	Hardwood Forest Soil	MKRERPADDLRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYHLNALAAEALFSESELMELGAVWNGRCWVGPGRIPRGDASD
Ga0307473_115287991	3300031820	Hardwood Forest Soil	MKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHARHRSTS
Ga0310892_104033612	3300031858	Soil	MRRKRPADDTRRRAIKARLQGVPSREIARRLERSPDTIKGYLGGCGATIKGIYYLNALAAEALFSESELMELGAVWNGRHWVGPGRNTRGDASEI
Ga0310892_106987712	3300031858	Soil	RERPADDIRRWAIKARLQGVSSREIAQSLDRSHETIKGYLGSCGGTVEGTYHLNALTARALFSEQELVELGAVWNGRCWVGPGRNKRDS
Ga0310892_112899581	3300031858	Soil	MKRERPADDIRRWAIKARLQGISSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL
Ga0310900_112888181	3300031908	Soil	MKRERPADDIRRWAIKARLQGVSSREIAQSLDRSHETIKGYLGSCGGTVEGTYHLNALTARALFSEQELVELGAVWNGRCWVGPGRNKRDS
Ga0310885_104491251	3300031943	Soil	MKRERPADDIRRWVIKARLQGVSSREIAQSLDRSHETIKGYLGSCGGTVEGTYHLNALTARALFSEQELVELGAVWNGRCWVGPGRNKRDS
Ga0310903_108116802	3300032000	Soil	MRRKRPADDTRRRAIKARLQGVPSREIARRLERSPDTIKGYLGGCGATIKGIYYLNALAAEALFSESELMELGAVWNGRHWVGPGRNTRGD
Ga0310906_106685401	3300032013	Soil	GWSSREGTMKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHARNRSTS
Ga0307470_103958861	3300032174	Hardwood Forest Soil	MKRERPADDARRTAIIARLQGTPTLEIARCLDRKHETIKGYLSSCGTTIDGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGYARHRSTS
Ga0307470_105640151	3300032174	Hardwood Forest Soil	MKRERPADEIRRRAIKARLQGVPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFTEKELMELGAVWNGRCWVGPGR
Ga0307470_106175682	3300032174	Hardwood Forest Soil	MKRERPADEIRRWAIKARLQGMPSREIAQSLDRSHETIKGYLGCCGGTIEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL
Ga0307470_107717972	3300032174	Hardwood Forest Soil	KARLQGISSREIALSLDRSHETIKGYLGSCGGTVEGAYHLNALTARALFTEQELVELGAVWNGRCWVGPGRNKREL
Ga0307471_1007623211	3300032180	Hardwood Forest Soil	MKRERPADDLRRRAIKARLQGMPSREIARRLERSHDTIKGYLGSCGATIKGTYHLNALAAEALFSESELMELGAVWNGRCWVGPGRIPRGDASDSAA
Ga0307471_1018930801	3300032180	Hardwood Forest Soil	MKRERPAAEMRRWVVKARLQGMPSREIAQRLGRSHDTIKGYLSGCGGMAEGTYHLNALVAKALFTEQELIELGAVWNGRCWVGPSHEVATELSVARRLQA
Ga0307471_1032502541	3300032180	Hardwood Forest Soil	MKRERPADDARRTAIIERLRGTPTLEIARCLDRNHETIKGYLSSCGTTIVGAYHLNSLIAKALFSEQQLLDVGAVWDGRSWVGHGRNRSTT
Ga0307471_1035377871	3300032180	Hardwood Forest Soil	MKRERPADDIRRWAIKARLQGISSREIALSLDRSHETIKGYLGSCGGTVDGTYHLNALTARALFTEQELVELGAVWNGRCWVGPGRC
Ga0307472_1003421322	3300032205	Hardwood Forest Soil	MKRERPADEIRRRAIKARLQGVPSREIARRLERSHDTIKGYLGGCGATIKGTYYLNALAAEALFTEKELMELGAIWNGRCWVGPGRNLSET
Ga0307472_1003980631	3300032205	Hardwood Forest Soil	MKRERPADDARRTAIIERLRGTPTLEIARCLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHGRNRSTT
Ga0373950_0131523_72_347	3300034818	Rhizosphere Soil	MKRERPADDARRTAIIERLRGTPTLEIARGLDRKHETIKGYLSSCGTTIGGAYHLNSLIAKALFTEQELLDVGAVWDGRSWVGHARNRSTS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F063120

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences