Metagenome Family F063058

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063058
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	44 residues
Representative Sequence	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTQVTPVLDGTR
Number of Associated Samples	99
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.77 %
% of genes near scaffold ends (potentially truncated)	35.38 %
% of genes from short scaffolds (< 2000 bps)	82.31 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.923 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (36.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.89% β-sheet: 0.00% Coil/Unstructured: 61.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF02824	TGS	30.00
PF04972	BON	27.69
PF07973	tRNA_SAD	14.62
PF00133	tRNA-synt_1	6.15
PF13620	CarboxypepD_reg	0.77
PF13443	HTH_26	0.77
PF00587	tRNA-synt_2b	0.77
PF10458	Val_tRNA-synt_C	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.92 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.92 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.92 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	53.85 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	53.85 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.08 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	17.69 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.08 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	17.69 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.08 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	17.69 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.08 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	10.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.08 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	10.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0706148	Not Available	612	Open in IMG/M
3300000890\|JGI11643J12802_12271022	Not Available	595	Open in IMG/M
3300000953\|JGI11615J12901_11144439	Not Available	618	Open in IMG/M
3300002899\|JGIcombinedJ43975_10102907	Not Available	524	Open in IMG/M
3300003319\|soilL2_10057802	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2310	Open in IMG/M
3300003324\|soilH2_10061949	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1386	Open in IMG/M
3300004114\|Ga0062593_100118398	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1922	Open in IMG/M
3300004114\|Ga0062593_100487260	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1138	Open in IMG/M
3300004114\|Ga0062593_100576076	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1066	Open in IMG/M
3300004114\|Ga0062593_100785885	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	944	Open in IMG/M
3300004114\|Ga0062593_100800339	Not Available	937	Open in IMG/M
3300004114\|Ga0062593_101023519	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	849	Open in IMG/M
3300004463\|Ga0063356_102805495	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	750	Open in IMG/M
3300004479\|Ga0062595_101268772	Not Available	660	Open in IMG/M
3300004480\|Ga0062592_102349802	Not Available	534	Open in IMG/M
3300004643\|Ga0062591_100368222	Not Available	1171	Open in IMG/M
3300005327\|Ga0070658_10092264	All Organisms → cellular organisms → Bacteria	2497	Open in IMG/M
3300005327\|Ga0070658_10627564	Not Available	932	Open in IMG/M
3300005329\|Ga0070683_101475717	Not Available	654	Open in IMG/M
3300005334\|Ga0068869_100798212	Not Available	811	Open in IMG/M
3300005339\|Ga0070660_101347291	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	606	Open in IMG/M
3300005340\|Ga0070689_100527282	Not Available	1015	Open in IMG/M
3300005345\|Ga0070692_10114016	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1499	Open in IMG/M
3300005355\|Ga0070671_100126029	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2156	Open in IMG/M
3300005355\|Ga0070671_100824126	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	809	Open in IMG/M
3300005364\|Ga0070673_100084726	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2578	Open in IMG/M
3300005406\|Ga0070703_10427549	Not Available	582	Open in IMG/M
3300005456\|Ga0070678_101867278	Not Available	567	Open in IMG/M
3300005471\|Ga0070698_100629209	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1014	Open in IMG/M
3300005526\|Ga0073909_10059708	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1410	Open in IMG/M
3300005548\|Ga0070665_100041836	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4606	Open in IMG/M
3300005548\|Ga0070665_102507803	Not Available	517	Open in IMG/M
3300005577\|Ga0068857_100569479	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1068	Open in IMG/M
3300005616\|Ga0068852_102719066	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	514	Open in IMG/M
3300005840\|Ga0068870_10936390	Not Available	614	Open in IMG/M
3300006169\|Ga0082029_1412513	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1822	Open in IMG/M
3300006169\|Ga0082029_1669335	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1793	Open in IMG/M
3300006237\|Ga0097621_100930524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	811	Open in IMG/M
3300006844\|Ga0075428_100040641	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5115	Open in IMG/M
3300006844\|Ga0075428_100100042	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3162	Open in IMG/M
3300006844\|Ga0075428_100339972	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1612	Open in IMG/M
3300006844\|Ga0075428_101158265	Not Available	816	Open in IMG/M
3300006844\|Ga0075428_101264069	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	777	Open in IMG/M
3300006845\|Ga0075421_100020481	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	8313	Open in IMG/M
3300006845\|Ga0075421_100022146	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	8003	Open in IMG/M
3300006845\|Ga0075421_100127144	All Organisms → cellular organisms → Bacteria	3196	Open in IMG/M
3300006845\|Ga0075421_101874346	Not Available	643	Open in IMG/M
3300006846\|Ga0075430_100001308	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	20082	Open in IMG/M
3300006846\|Ga0075430_100676173	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	851	Open in IMG/M
3300006847\|Ga0075431_100498556	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1209	Open in IMG/M
3300006871\|Ga0075434_101141290	Not Available	792	Open in IMG/M
3300006876\|Ga0079217_10153831	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1117	Open in IMG/M
3300006876\|Ga0079217_10281590	Not Available	909	Open in IMG/M
3300006876\|Ga0079217_11051614	Not Available	602	Open in IMG/M
3300006880\|Ga0075429_101985580	Not Available	504	Open in IMG/M
3300006894\|Ga0079215_10036991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1797	Open in IMG/M
3300006954\|Ga0079219_10466654	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	869	Open in IMG/M
3300007004\|Ga0079218_11993124	Not Available	662	Open in IMG/M
3300009100\|Ga0075418_11372827	Not Available	766	Open in IMG/M
3300009156\|Ga0111538_13479638	Not Available	546	Open in IMG/M
3300010042\|Ga0126314_10417957	Not Available	967	Open in IMG/M
3300010044\|Ga0126310_10444217	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	935	Open in IMG/M
3300010045\|Ga0126311_11739158	Not Available	527	Open in IMG/M
3300010166\|Ga0126306_10119410	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1928	Open in IMG/M
3300012519\|Ga0157352_1079373	Not Available	546	Open in IMG/M
3300012911\|Ga0157301_10447232	Not Available	512	Open in IMG/M
3300012971\|Ga0126369_10579776	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1189	Open in IMG/M
3300013104\|Ga0157370_12122257	Not Available	503	Open in IMG/M
3300013105\|Ga0157369_10991775	Not Available	860	Open in IMG/M
3300015262\|Ga0182007_10028509	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1917	Open in IMG/M
3300015371\|Ga0132258_10012638	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	17792	Open in IMG/M
3300015373\|Ga0132257_100413334	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1642	Open in IMG/M
3300015374\|Ga0132255_104689737	Not Available	579	Open in IMG/M
3300017792\|Ga0163161_10847302	Not Available	771	Open in IMG/M
3300018469\|Ga0190270_10472419	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1186	Open in IMG/M
3300018476\|Ga0190274_10082529	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2480	Open in IMG/M
3300019377\|Ga0190264_11450784	Not Available	592	Open in IMG/M
3300019377\|Ga0190264_11460940	Not Available	591	Open in IMG/M
3300021445\|Ga0182009_10786768	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	520	Open in IMG/M
3300025321\|Ga0207656_10143213	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1128	Open in IMG/M
3300025899\|Ga0207642_10093038	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1494	Open in IMG/M
3300025899\|Ga0207642_10976993	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	545	Open in IMG/M
3300025904\|Ga0207647_10033497	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3290	Open in IMG/M
3300025908\|Ga0207643_10012073	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4665	Open in IMG/M
3300025908\|Ga0207643_11130160	Not Available	505	Open in IMG/M
3300025919\|Ga0207657_10030520	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4892	Open in IMG/M
3300025920\|Ga0207649_10203533	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1400	Open in IMG/M
3300025925\|Ga0207650_10641910	Not Available	894	Open in IMG/M
3300025931\|Ga0207644_10887906	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	747	Open in IMG/M
3300025936\|Ga0207670_10511387	Not Available	977	Open in IMG/M
3300025937\|Ga0207669_10983865	Not Available	708	Open in IMG/M
3300025942\|Ga0207689_10847722	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	771	Open in IMG/M
3300025944\|Ga0207661_11313807	Not Available	664	Open in IMG/M
3300025972\|Ga0207668_11356488	Not Available	641	Open in IMG/M
3300026088\|Ga0207641_10028269	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4632	Open in IMG/M
3300026088\|Ga0207641_10941363	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	859	Open in IMG/M
3300026088\|Ga0207641_11116224	Not Available	787	Open in IMG/M
3300026116\|Ga0207674_11346708	Not Available	683	Open in IMG/M
3300026121\|Ga0207683_10148839	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2112	Open in IMG/M
3300027637\|Ga0209818_1102862	Not Available	758	Open in IMG/M
3300027691\|Ga0209485_1012137	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1853	Open in IMG/M
3300027750\|Ga0209461_10094666	Not Available	670	Open in IMG/M
3300027880\|Ga0209481_10258968	Not Available	877	Open in IMG/M
3300027880\|Ga0209481_10298558	Not Available	817	Open in IMG/M
3300027886\|Ga0209486_10496169	Not Available	758	Open in IMG/M
3300027886\|Ga0209486_10585400	Not Available	705	Open in IMG/M
3300027907\|Ga0207428_10298650	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1192	Open in IMG/M
3300027907\|Ga0207428_11177204	Not Available	534	Open in IMG/M
3300027907\|Ga0207428_11278827	Not Available	509	Open in IMG/M
3300027909\|Ga0209382_10008747	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	12740	Open in IMG/M
3300027909\|Ga0209382_10120127	All Organisms → cellular organisms → Bacteria	3065	Open in IMG/M
3300027909\|Ga0209382_10266901	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1939	Open in IMG/M
3300027909\|Ga0209382_10799695	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1004	Open in IMG/M
3300028379\|Ga0268266_10062964	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3202	Open in IMG/M
3300028592\|Ga0247822_11628572	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	548	Open in IMG/M
3300031538\|Ga0310888_10027755	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2459	Open in IMG/M
3300031548\|Ga0307408_102092101	Not Available	546	Open in IMG/M
3300031731\|Ga0307405_10311979	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1198	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1000107	All Organisms → cellular organisms → Bacteria	378180	Open in IMG/M
3300031892\|Ga0310893_10168391	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	864	Open in IMG/M
3300031903\|Ga0307407_10747625	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	740	Open in IMG/M
3300031911\|Ga0307412_10954453	Not Available	755	Open in IMG/M
3300031943\|Ga0310885_10286208	Not Available	847	Open in IMG/M
3300031995\|Ga0307409_100802356	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	949	Open in IMG/M
3300032000\|Ga0310903_10107867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1195	Open in IMG/M
3300032013\|Ga0310906_10074392	Not Available	1775	Open in IMG/M
3300032017\|Ga0310899_10099014	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1173	Open in IMG/M
3300032074\|Ga0308173_11838391	Not Available	571	Open in IMG/M
3300033412\|Ga0310810_10312662	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1679	Open in IMG/M
3300034147\|Ga0364925_0085528	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1107	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	55.38%
Environmental	Environmental	44.62%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	55.38%
Terrestrial	Environmental → Terrestrial	44.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.77%
Roots	Host-Associated → Plants → Roots	0.77%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.54%
Loam	Environmental → Terrestrial → Soil → Loam	5.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.31%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.54%
Sand	Environmental → Terrestrial → Soil → Sand	0.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	16.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.54%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.54%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.54%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	1.54%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.54%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.77%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.77%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.77%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07061482	2228664021	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRFGTQVTPLLDGTR
JGI11643J12802_122710221	3300000890	Soil	PPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
JGI11615J12901_111444392	3300000953	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLILYFRYGAQVTPLLNGTR*
JGIcombinedJ43975_101029071	3300002899	Soil	VSYPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
soilL2_100578022	3300003319	Sugarcane Root And Bulk Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGAQVTPLLNSTR*
soilH2_100619491	3300003324	Sugarcane Root And Bulk Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLILYFRYGAQVTPLLDGTR*
Ga0062593_1001183982	3300004114	Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
Ga0062593_1004872601	3300004114	Soil	MAPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0062593_1005760762	3300004114	Soil	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0062593_1007858852	3300004114	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR*
Ga0062593_1008003392	3300004114	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTQVTPVLDGTR*
Ga0062593_1010235191	3300004114	Soil	MPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLIDGPR*
Ga0063356_1028054951	3300004463	Arabidopsis Thaliana Rhizosphere	MPPQDRVPMGRVIPWVVLVVLLIAGLVLYFKYGTQVTPLLDGTR*
Ga0062595_1012687721	3300004479	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0062592_1023498021	3300004480	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR*
Ga0062591_1003682221	3300004643	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDATR*
Ga0070658_100922641	3300005327	Corn Rhizosphere	LTLYHTMPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0070658_106275642	3300005327	Corn Rhizosphere	PQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
Ga0070683_1014757171	3300005329	Corn Rhizosphere	LTVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0068869_1007982121	3300005334	Miscanthus Rhizosphere	LTVSHTMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR*
Ga0070660_1013472911	3300005339	Corn Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFLYGSQVTSLIDGPR*
Ga0070689_1005272821	3300005340	Switchgrass Rhizosphere	PMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR*
Ga0070692_101140162	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR*
Ga0070671_1001260291	3300005355	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLLAGLVLYFRYGPQVTSLLDGTR*
Ga0070671_1008241262	3300005355	Switchgrass Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPVLNSTR*
Ga0070673_1000847263	3300005364	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDG
Ga0070703_104275492	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LELTVSYPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
Ga0070678_1018672781	3300005456	Miscanthus Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGSQVTSLLDGPR*
Ga0070698_1006292091	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTKVTPLLDGTR*
Ga0073909_100597082	3300005526	Surface Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGGQVTPLLDSTR*
Ga0070665_1000418363	3300005548	Switchgrass Rhizosphere	MPPQDRVPIGRVIPWVVLVLLLIAGVVLYFRYGTQITPLLDGTR*
Ga0070665_1025078032	3300005548	Switchgrass Rhizosphere	LYHTMPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0068857_1005694792	3300005577	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTP
Ga0068852_1027190662	3300005616	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITP
Ga0068870_109363902	3300005840	Miscanthus Rhizosphere	TVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0082029_14125132	3300006169	Termite Nest	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTRVTPILDSTR*
Ga0082029_16693353	3300006169	Termite Nest	MPPQDRVPIGRVIPWVILVVLLIVGLVLYFQYGADVTPLVDGTR*
Ga0097621_1009305241	3300006237	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLQHALSG
Ga0075428_1000406413	3300006844	Populus Rhizosphere	MPPQDRAPIGRVIPWVVLIVLLLAGLVLYFRYGARVTPILDSTR*
Ga0075428_1001000422	3300006844	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPILDSTR*
Ga0075428_1003399722	3300006844	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRFGTQVTPLLDGTR*
Ga0075428_1011582652	3300006844	Populus Rhizosphere	IGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR*
Ga0075428_1012640691	3300006844	Populus Rhizosphere	MPPQDRIPIGRVIPWVVLVVLLIGGLVLYFTYGSRVTPLLDGTR*
Ga0075421_1000204816	3300006845	Populus Rhizosphere	MLPQDRVPIGRVIPWVILVVLLVVGLVLYFQYGADVTPLVDGTR*
Ga0075421_1000221464	3300006845	Populus Rhizosphere	MPPQDRVPIGRVIPWVILVVLLVVGLVLYFRYGADVTPLVDGTR*
Ga0075421_1001271442	3300006845	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLVAGVVLYFRYGTQITPLLDGTR*
Ga0075421_1018743461	3300006845	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYLRYGVQVTPLLDGTR*
Ga0075430_1000013089	3300006846	Populus Rhizosphere	MPPQDRVPIGRVIPWVILVVLLIAGLVLYFSYGSDVTPLLDGTR*
Ga0075430_1006761731	3300006846	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYLRYGVQVTPLLDGT
Ga0075431_1004985561	3300006847	Populus Rhizosphere	MPPQDRIPIGRVIPWVVLVVLLIGGLVLYFTYGSRVTPLLDGT
Ga0075434_1011412902	3300006871	Populus Rhizosphere	VPIGRVIPWVVLVILLVAGLVLYFRYGNQVTPLLDGTR*
Ga0079217_101538312	3300006876	Agricultural Soil	MPPQERVPIGRVIPWVILVVLLIAGLVLYFSYGSDVTPLLDGSR*
Ga0079217_102815902	3300006876	Agricultural Soil	MPPQDRVPIGRVIPWVILVVLLLAGIVLYFRYGTQVTPLLDGTP*
Ga0079217_110516142	3300006876	Agricultural Soil	MPPQDRVPLGRVIPWVVLVVLLITGLVLYFRYGTQVTPLLDGTR*
Ga0075429_1019855802	3300006880	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR*
Ga0079215_100369912	3300006894	Agricultural Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGAQVTPLLDGTR*
Ga0079219_104666541	3300006954	Agricultural Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFLYGGHVTPLLDGT
Ga0079218_119931242	3300007004	Agricultural Soil	IGRVIPWVVLVVLLLAGLVLYLRYGAQVTPLLNGTR*
Ga0075418_113728272	3300009100	Populus Rhizosphere	MPPQDRIPIGRVIPWVVLVVLLIEGLVLYFTYGSRVTPLLDGTR*
Ga0111538_134796382	3300009156	Populus Rhizosphere	RVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0126314_104179571	3300010042	Serpentine Soil	GRVIPWVVVLVLLIAGVVLYLRYGTQMTPLLDGTR*
Ga0126310_104442171	3300010044	Serpentine Soil	MPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLLDGPR*
Ga0126311_117391581	3300010045	Serpentine Soil	HTMPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGPQVTSLLDGPR*
Ga0126306_101194101	3300010166	Serpentine Soil	MPPQDRVPIGRVIPWVVLVALLIAGVVLYFRYGTQITPLLDGTR*
Ga0157352_10793731	3300012519	Unplanted Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGARVTPILDSTR*
Ga0157301_104472321	3300012911	Soil	MPPQDRVPIGRVIPWIVLVVLLLAGVVLYFRYGTQVTPLLDGTC*
Ga0126369_105797762	3300012971	Tropical Forest Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0157370_121222571	3300013104	Corn Rhizosphere	MAPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLDSTR*
Ga0157369_109917752	3300013105	Corn Rhizosphere	MAPQDRVPIGRVIPLVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0182007_100285092	3300015262	Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFLYGRQVTPLLDGTR*
Ga0132258_100126388	3300015371	Arabidopsis Rhizosphere	MSPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGGQVTPLLDSTR*
Ga0132257_1004133341	3300015373	Arabidopsis Rhizosphere	MPPQDRAPIGRVIPWVVLVVLLLAGLVLYFRYGARVTPILDSTR*
Ga0132255_1046897371	3300015374	Arabidopsis Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLVAGLVLYFRYGGQVTPLLDGTR*
Ga0163161_108473022	3300017792	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR
Ga0190270_104724192	3300018469	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR
Ga0190274_100825291	3300018476	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR
Ga0190264_114507841	3300019377	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGAGTTPLLDGTR
Ga0190264_114609401	3300019377	Soil	MSPQDRVPIGRVIPWVVLVVLLIAGLVLYFRFVTQVTPLLDATR
Ga0182009_107867681	3300021445	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLD
Ga0207656_101432132	3300025321	Corn Rhizosphere	MAPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0207642_100930382	3300025899	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207642_109769932	3300025899	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQV
Ga0207647_100334973	3300025904	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR
Ga0207643_100120733	3300025908	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDATR
Ga0207643_111301601	3300025908	Miscanthus Rhizosphere	APQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0207657_100305204	3300025919	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207649_102035332	3300025920	Corn Rhizosphere	QSMPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLIDGPR
Ga0207650_106419102	3300025925	Switchgrass Rhizosphere	TVSHTMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR
Ga0207644_108879062	3300025931	Switchgrass Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGSQVTSLLDGPR
Ga0207670_105113872	3300025936	Switchgrass Rhizosphere	LTVYHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207669_109838652	3300025937	Miscanthus Rhizosphere	QDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207689_108477221	3300025942	Miscanthus Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGSQVTSLLDGP
Ga0207661_113138071	3300025944	Corn Rhizosphere	LTVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0207668_113564882	3300025972	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGTQVTSLLD
Ga0207641_100282693	3300026088	Switchgrass Rhizosphere	SYPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR
Ga0207641_109413632	3300026088	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLD
Ga0207641_111162242	3300026088	Switchgrass Rhizosphere	LLLTLYHTMPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR
Ga0207674_113467082	3300026116	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFLYGRQVTPLLDGTR
Ga0207683_101488393	3300026121	Miscanthus Rhizosphere	MPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLLDGPR
Ga0209818_11028621	3300027637	Agricultural Soil	QDRVPIGRVIPWVILVVLLLAGIVLYFRYGTQVTPLLDGTP
Ga0209485_10121373	3300027691	Agricultural Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGAQVTPLLDGTR
Ga0209461_100946662	3300027750	Agave	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQITPLLDGTR
Ga0209481_102589681	3300027880	Populus Rhizosphere	TMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR
Ga0209481_102985581	3300027880	Populus Rhizosphere	HPMPPQDRAPIGRVIPWVVLIVLLLAGLVLYFRYGARVTPILDSTR
Ga0209486_104961692	3300027886	Agricultural Soil	MPPQDRVPMGRVIPWVVLVVLLIAGLVLYFKYGTQVTPLLDGTR
Ga0209486_105854001	3300027886	Agricultural Soil	MPPQDRVPIGRVIPWVILVVLLLAGIVLYFRYGTQVTPLLDGTP
Ga0207428_102986501	3300027907	Populus Rhizosphere	MPPQDRAPIGRVIPWVVLIVLLLAGLVLYFRYGARVTPILDSTR
Ga0207428_111772042	3300027907	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTP
Ga0207428_112788272	3300027907	Populus Rhizosphere	EGHLELTVSHPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR
Ga0209382_100087479	3300027909	Populus Rhizosphere	MLPQDRVPIGRVIPWVILVVLLVVGLVLYFQYGADVTPLVDGTR
Ga0209382_101201273	3300027909	Populus Rhizosphere	MPPQDRVPIGRVIPWVILVVLLVVGLVLYFRYGADVTPLVDGTR
Ga0209382_102669013	3300027909	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLVAGVVLYFRYGTQITPLLDGTR
Ga0209382_107996952	3300027909	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPILDSTR
Ga0268266_100629642	3300028379	Switchgrass Rhizosphere	MPPQDRVPIGRVIPWVVLVLLLIAGVVLYFRYGTQITPLLDGTR
Ga0247822_116285721	3300028592	Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR
Ga0310888_100277553	3300031538	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGGQVTPLLDSTR
Ga0307408_1020921011	3300031548	Rhizosphere	GRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR
Ga0307405_103119792	3300031731	Rhizosphere	MPPQDRVPIGRVIPWVVVLVLLIAGVVLYLRYGTQITPLLDGTR
(restricted) Ga0255338_1000107168	3300031825	Sandy Soil	VPTGRVIPWVILLVLLVAGLVLYFRYGGGVSPLLDGTR
Ga0310893_101683912	3300031892	Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTE
Ga0307407_107476252	3300031903	Rhizosphere	MPPQDRVPMGRVIPWVVLVLLLIAGLVLYFKYGTQVTPLLDGTR
Ga0307412_109544532	3300031911	Rhizosphere	MPSPDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR
Ga0310885_102862082	3300031943	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYLRYGAQVTPLLDGTR
Ga0307409_1008023562	3300031995	Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTKVTPVLDGTR
Ga0310903_101078671	3300032000	Soil	MPPQDRVPIGRVIPWIVLIVLLLAGLVLYFRYGTEVTPVLNSTR
Ga0310906_100743922	3300032013	Soil	HLELTVSHTMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDATR
Ga0310899_100990142	3300032017	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLD
Ga0308173_118383911	3300032074	Soil	LELTVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0310810_103126622	3300033412	Soil	MPPQDRVPIGRVIPWVVLIVLLIAGLVLYFRYGSHATPLLDGTR
Ga0364925_0085528_541_675	3300034147	Sediment	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLIDGTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters