Metagenome / Metatranscriptome Family F063047

Basic Information
Family ID	F063047
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	74 residues
Representative Sequence	MERTDVQRMADSVLRDYGVPLKVSNISAAEAGWTIAFSGYPGSPLKQVSLRCGDRSSVHHVRESLKRSLDVSD
Number of Associated Samples	103
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.42 %
% of genes near scaffold ends (potentially truncated)	26.15 %
% of genes from short scaffolds (< 2000 bps)	91.54 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Most Common Taxonomy
Group	Bacteria (62.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.231 % of family members)
Environment Ontology (ENVO)	Unclassified (41.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.615 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.73% β-sheet: 20.79% Coil/Unstructured: 52.48%
Feature Viewer

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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF01476	LysM	26.15
PF00190	Cupin_1	11.54
PF07969	Amidohydro_3	6.15
PF07883	Cupin_2	3.85
PF01436	NHL	3.85
PF07908	Obsolete Pfam Family	3.08
PF01425	Amidase	3.08
PF17170	DUF5128	3.08
PF01263	Aldose_epim	2.31
PF13594	Obsolete Pfam Family	0.77
PF13432	TPR_16	0.77
PF01740	STAS	0.77
PF08450	SGL	0.77
PF13147	Obsolete Pfam Family	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	3.08
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	2.31
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	2.31
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.77
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.31 %
Unclassified	root	N/A	37.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.31 %
Unclassified	root	N/A	37.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.31 %
Unclassified	root	N/A	37.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.38 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.08 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.08 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.08 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.08 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.08 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.69 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.08 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918007\|ConsensusfromContig895	Not Available	1376	Open in IMG/M
3300000956\|JGI10216J12902_108531168	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300002568\|C688J35102_120128756	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300004114\|Ga0062593_100880867	All Organisms → cellular organisms → Bacteria → Acidobacteria	902	Open in IMG/M
3300004156\|Ga0062589_100382472	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300004463\|Ga0063356_100456166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1671	Open in IMG/M
3300004463\|Ga0063356_106115559	Not Available	516	Open in IMG/M
3300004643\|Ga0062591_100215858	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300004643\|Ga0062591_102186698	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300005093\|Ga0062594_102716051	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300005093\|Ga0062594_103145323	Not Available	517	Open in IMG/M
3300005168\|Ga0066809_10192526	Not Available	548	Open in IMG/M
3300005294\|Ga0065705_10174507	All Organisms → cellular organisms → Bacteria → Proteobacteria	1640	Open in IMG/M
3300005294\|Ga0065705_10400681	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300005328\|Ga0070676_10361019	Not Available	1001	Open in IMG/M
3300005330\|Ga0070690_101546049	Not Available	537	Open in IMG/M
3300005333\|Ga0070677_10258293	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300005335\|Ga0070666_10970152	Not Available	630	Open in IMG/M
3300005341\|Ga0070691_10642148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	631	Open in IMG/M
3300005347\|Ga0070668_100028284	All Organisms → cellular organisms → Bacteria	4256	Open in IMG/M
3300005440\|Ga0070705_100038621	All Organisms → cellular organisms → Bacteria	2703	Open in IMG/M
3300005457\|Ga0070662_100124554	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1979	Open in IMG/M
3300005459\|Ga0068867_100252708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300005459\|Ga0068867_100415156	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300005468\|Ga0070707_100758404	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300005544\|Ga0070686_101019238	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300005555\|Ga0066692_10127198	All Organisms → cellular organisms → Bacteria	1543	Open in IMG/M
3300005618\|Ga0068864_100583872	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300005719\|Ga0068861_100987929	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300005834\|Ga0068851_10494950	Not Available	732	Open in IMG/M
3300005842\|Ga0068858_102461231	Not Available	514	Open in IMG/M
3300005952\|Ga0080026_10165775	Not Available	644	Open in IMG/M
3300006041\|Ga0075023_100122217	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300006050\|Ga0075028_100434646	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300006172\|Ga0075018_10382349	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300006358\|Ga0068871_100481329	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300009029\|Ga0066793_10102650	All Organisms → cellular organisms → Bacteria → Proteobacteria	1657	Open in IMG/M
3300009090\|Ga0099827_10003074	All Organisms → cellular organisms → Bacteria	9428	Open in IMG/M
3300009098\|Ga0105245_11964352	Not Available	638	Open in IMG/M
3300009098\|Ga0105245_12975488	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300009101\|Ga0105247_11361845	Not Available	572	Open in IMG/M
3300009176\|Ga0105242_10878244	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300009177\|Ga0105248_10435434	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300009177\|Ga0105248_10688164	Not Available	1154	Open in IMG/M
3300009177\|Ga0105248_13208791	Not Available	520	Open in IMG/M
3300009661\|Ga0105858_1266998	Not Available	526	Open in IMG/M
3300009789\|Ga0126307_10351084	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300009789\|Ga0126307_11646828	Not Available	521	Open in IMG/M
3300010040\|Ga0126308_10639686	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300010166\|Ga0126306_11385083	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	582	Open in IMG/M
3300010399\|Ga0134127_11257370	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300010399\|Ga0134127_13528421	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300010400\|Ga0134122_10360044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1270	Open in IMG/M
3300010400\|Ga0134122_12836297	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300010400\|Ga0134122_13093739	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300011431\|Ga0137438_1135006	Not Available	756	Open in IMG/M
3300012212\|Ga0150985_102214706	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300012212\|Ga0150985_104261445	Not Available	598	Open in IMG/M
3300012212\|Ga0150985_109026773	All Organisms → cellular organisms → Bacteria → Acidobacteria	759	Open in IMG/M
3300012212\|Ga0150985_111735799	Not Available	527	Open in IMG/M
3300012212\|Ga0150985_111911549	Not Available	700	Open in IMG/M
3300012212\|Ga0150985_113247387	Not Available	775	Open in IMG/M
3300012212\|Ga0150985_114038730	All Organisms → cellular organisms → Bacteria → Acidobacteria	847	Open in IMG/M
3300012469\|Ga0150984_110321343	Not Available	674	Open in IMG/M
3300012469\|Ga0150984_110920311	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	694	Open in IMG/M
3300012469\|Ga0150984_120050879	Not Available	683	Open in IMG/M
3300012469\|Ga0150984_122106125	Not Available	601	Open in IMG/M
3300012469\|Ga0150984_122466045	Not Available	521	Open in IMG/M
3300012924\|Ga0137413_11600528	Not Available	532	Open in IMG/M
3300012925\|Ga0137419_11801462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300012930\|Ga0137407_11218261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	714	Open in IMG/M
3300012984\|Ga0164309_11526929	Not Available	572	Open in IMG/M
3300013306\|Ga0163162_13222438	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300013306\|Ga0163162_13290481	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300013308\|Ga0157375_13559774	Not Available	518	Open in IMG/M
3300014326\|Ga0157380_12507639	Not Available	581	Open in IMG/M
3300014502\|Ga0182021_10219990	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300015165\|Ga0167628_1049552	Not Available	863	Open in IMG/M
3300015192\|Ga0167646_1045423	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300015264\|Ga0137403_10349931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1365	Open in IMG/M
3300017792\|Ga0163161_11383297	Not Available	614	Open in IMG/M
3300018076\|Ga0184609_10383393	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300018468\|Ga0066662_11750854	Not Available	650	Open in IMG/M
3300018476\|Ga0190274_10529886	All Organisms → cellular organisms → Bacteria → Acidobacteria	1186	Open in IMG/M
3300019889\|Ga0193743_1237001	Not Available	544	Open in IMG/M
3300019890\|Ga0193728_1153469	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300019996\|Ga0193693_1016896	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300020034\|Ga0193753_10078015	All Organisms → cellular organisms → Bacteria → Proteobacteria	1698	Open in IMG/M
3300021073\|Ga0210378_10359199	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300021080\|Ga0210382_10385016	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300021178\|Ga0210408_10338935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1199	Open in IMG/M
3300021479\|Ga0210410_11447970	Not Available	580	Open in IMG/M
3300022756\|Ga0222622_10036164	All Organisms → cellular organisms → Bacteria → Acidobacteria	2678	Open in IMG/M
3300022756\|Ga0222622_10952424	Not Available	630	Open in IMG/M
3300024254\|Ga0247661_1045577	Not Available	799	Open in IMG/M
3300025321\|Ga0207656_10713315	Not Available	514	Open in IMG/M
3300025899\|Ga0207642_11119216	Not Available	509	Open in IMG/M
3300025900\|Ga0207710_10319708	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300025903\|Ga0207680_10425050	Not Available	941	Open in IMG/M
3300025930\|Ga0207701_10477727	All Organisms → cellular organisms → Bacteria → Acidobacteria	1068	Open in IMG/M
3300025930\|Ga0207701_10499695	All Organisms → cellular organisms → Bacteria → Acidobacteria	1041	Open in IMG/M
3300025934\|Ga0207686_10758834	Not Available	775	Open in IMG/M
3300025938\|Ga0207704_10080294	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2105	Open in IMG/M
3300025944\|Ga0207661_10148481	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300025981\|Ga0207640_11081092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300026035\|Ga0207703_11518779	Not Available	644	Open in IMG/M
3300026075\|Ga0207708_10011755	All Organisms → cellular organisms → Bacteria → Acidobacteria	6523	Open in IMG/M
3300026089\|Ga0207648_10296124	All Organisms → cellular organisms → Bacteria → Proteobacteria	1450	Open in IMG/M
3300026118\|Ga0207675_100388028	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300026118\|Ga0207675_100988256	All Organisms → cellular organisms → Bacteria → Acidobacteria	860	Open in IMG/M
3300026358\|Ga0257166_1049556	Not Available	597	Open in IMG/M
3300026555\|Ga0179593_1155321	All Organisms → cellular organisms → Bacteria → Acidobacteria	2055	Open in IMG/M
3300027882\|Ga0209590_10004139	All Organisms → cellular organisms → Bacteria	6129	Open in IMG/M
3300027894\|Ga0209068_10345509	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300027903\|Ga0209488_11148997	Not Available	526	Open in IMG/M
3300027910\|Ga0209583_10147618	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300027915\|Ga0209069_10476193	Not Available	698	Open in IMG/M
3300028380\|Ga0268265_10430381	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1227	Open in IMG/M
3300028768\|Ga0307280_10263373	Not Available	622	Open in IMG/M
3300030902\|Ga0308202_1075588	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300030903\|Ga0308206_1125119	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300030905\|Ga0308200_1084621	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300030916\|Ga0075386_11542859	Not Available	531	Open in IMG/M
3300030993\|Ga0308190_1061584	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300031054\|Ga0102746_10961587	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300031231\|Ga0170824_111455248	Not Available	738	Open in IMG/M
3300031231\|Ga0170824_117407711	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300031474\|Ga0170818_109101805	Not Available	744	Open in IMG/M
3300034680\|Ga0370541_027737	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.54%
Host-Associated	Host-Associated	38.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.31%
Plants	Host-Associated → Plants	38.46%
Aquatic	Environmental → Aquatic	9.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.92%
Sediment	Environmental → Aquatic → Sediment	7.69%
Freshwater	Environmental → Aquatic → Freshwater	1.54%
Roots	Host-Associated → Plants → Roots	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.69%
Loam	Environmental → Terrestrial → Soil → Loam	6.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.08%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.54%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.08%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.54%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.23%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.38%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.62%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.08%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.31%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.54%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.54%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.77%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.77%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015165	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3A, Proglacial river margin, by glacier terminus)	Environmental	Open in IMG/M
3300015192	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031054	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_03121440	2140918007	Soil	MERTDVQRMADSVLRDYGVPMKVSAISAAEAGWTIAFSSLYAGSPLLEVNVNSDRSSPHHVRESLKRSLDVSD
JGI10216J12902_1085311682	3300000956	Soil	MESTDVQRMADSVLRDYGVPLKVSCISAVEAGWTIAFSAAYPGGASRQVSLRCCERSSMHHVRESLKRSLDVSD*
C688J35102_1201287562	3300002568	Soil	MERSDVQRMADSVLREYGVPMKVSTISAVAAGWTVAFAGFYPGSKPMEVNLACDRSSAYHIRESLKRSLDVAD*
Ga0062593_1008808672	3300004114	Soil	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGERSSIHHVRESLKRSLDVCD*
Ga0062589_1003824722	3300004156	Soil	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVMLRCGARSSVHHVRESLKRSLDLCD*
Ga0063356_1004561662	3300004463	Arabidopsis Thaliana Rhizosphere	MESTDLQRMADSVLRDYGVPLKVSCISAVEAGWTIAFSASYPGGASRQVSLRCGERSSMHHVRESLKRSLDVSD*
Ga0063356_1061155592	3300004463	Arabidopsis Thaliana Rhizosphere	LKDAIIGDMERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVMLRCGARSSVHHVRESLKRSLDLCD*
Ga0062591_1002158583	3300004643	Soil	MVSTDLQRMADSVLRDYGVPLKVSEISEVDAGWTIAFTASRPGGAAKQVSLRCGARSSMHHVRESLKRGLDVSD*
Ga0062591_1021866981	3300004643	Soil	GDMERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVMLRCGARSSVHHVRESLKRSLDLCD*
Ga0062594_1027160512	3300005093	Soil	MERIDVQRLADSVLRDYAVPLKVSTISVAEAGWTIAFAGSRPGMPPVEVLLRCDRSSAHHVRESLKRSLSVGD*
Ga0062594_1031453231	3300005093	Soil	MESTDLQRMADSVLRDYGVPLKVAQISAVEAGWTIAFSAARPGGLPRQVSLRCGEHSSMHHVRESLKRGLDVSD*
Ga0066809_101925261	3300005168	Soil	MERADVQRVADSVLREYGVPMKVSAISAADAGWTIAFASLYAGSPSIEVNVNSDRASAHHVRESLKKSLDLSD*
Ga0065705_101745072	3300005294	Switchgrass Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAEIYAVEAGWTIAFSAARRGGLPKQVSLRCGERSSMHHVRESLKRGLDVSD*
Ga0065705_104006812	3300005294	Switchgrass Rhizosphere	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGARSSIHHVRESLKRSLDVCD*
Ga0070676_103610192	3300005328	Miscanthus Rhizosphere	MELNDVQRMADSVLRDYGVPMKVSMISPAPAGWTIAFAGRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD*
Ga0070690_1015460492	3300005330	Switchgrass Rhizosphere	MELHDVQRMADSVLREYGVPMKVATISAATAGWTIGFAGAYPGSPAFEVNLNCDRTSVHHVRESLKRSLAVCD*
Ga0070677_102582932	3300005333	Miscanthus Rhizosphere	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGQRSSIHHVRESLKRSLDVCD*
Ga0070666_109701521	3300005335	Switchgrass Rhizosphere	MEINDVQRMADSVLREYGVPMRVATISPVAAGWTVAFTSRYPGSPSVEVRLGCDKSSVHHVRESLKRGLSVCD*
Ga0070691_106421481	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAQISEVEAGWTIAFASARPGGLPRQVSLRCSQRSSMHHVRESLKRGLDL
Ga0070668_1000282843	3300005347	Switchgrass Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAQISEVEAGWTIAFASARPGGLPRQVSLRCSQRSSMHHVRESLKRGLDLSD*
Ga0070705_1000386211	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MERTDVQRMADSVLREYGVPLKVSTISAAEAGWTIAFSSYYPGSPLKHVNLRCCERSSVHHVRESLKRSLDVSD*
Ga0070662_1001245542	3300005457	Corn Rhizosphere	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGARSSIHHVRESLK
Ga0068867_1002527083	3300005459	Miscanthus Rhizosphere	LRDYGVPMKVSMISPAPAGWTIAFAGRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD
Ga0068867_1004151562	3300005459	Miscanthus Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAQISAVEAVWTIAFSAARPGGLPRQVSLRCGEHSSMHHVRESLKRGLDVSD*
Ga0070707_1007584042	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDVQRMADSVLRDYGVPMKVATIVPADSGWTIGFAAKFTGAPAMEVFLRCDRNSAHHVRESLKRSLQLTD*
Ga0070686_1010192381	3300005544	Switchgrass Rhizosphere	RTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVSD*
Ga0066692_101271982	3300005555	Soil	MERSDVQRMADSVLRDYGVPMKVATIVPADSGWTIGFAAKFTGAPAVEVLLRCDRNSAHHVRESLKRSLQLTD*
Ga0068864_1005838722	3300005618	Switchgrass Rhizosphere	MERTDVQRMADSVLREYGVPMKVSAISPVATGWTIAFSSFYAGSPVLEVNVRSDRSSAHHVRESLKRSLDVSD*
Ga0068861_1009879292	3300005719	Switchgrass Rhizosphere	GGDMERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVSD*
Ga0068851_104949502	3300005834	Corn Rhizosphere	MELNDVQRMADSVLRDYGVPMTVSTISPAAAGWTVAFASRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD*
Ga0068858_1024612311	3300005842	Switchgrass Rhizosphere	MERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVSD*
Ga0080026_101657752	3300005952	Permafrost Soil	MQRTDVQRMADSVLRDYGVPMKVSAISAAEAGWTIAFSSLYAGSPLLDVNVSSDRSSPHHVRESLKRSLDVSD*
Ga0075023_1001222172	3300006041	Watersheds	MMERLDVQRLADSVLRDYAVPMKVATISAAAAGWTIAFAGFYAGSRSVEVNLNCDRSSAYHVRESLKKSLDVCD*
Ga0075028_1004346462	3300006050	Watersheds	MERTDLQRMADSVLRDYGVPMKVSAISAAEAGWTIAFSSIYAGSPLLQVNVSSDRTSAHHVRESLKRSLDVSD*
Ga0075018_103823491	3300006172	Watersheds	MDLNDVQRMADSVLREYGVPMRVSTIVPAPAGWTVAFAGRYPGAPSVEVKLGCDHSSAHHVRESLKRGLSVCD*
Ga0068871_1004813292	3300006358	Miscanthus Rhizosphere	MERTDVQRMADSVLRDYGVPLKVSNISAAEAGWTIAFSGYPGSPLKQVSLRCGDRSSVHHVRESLKRSLDVSD*
Ga0066793_101026503	3300009029	Prmafrost Soil	MDRADVQRMADSVLRDYGVPLKVSAISAAAAGWTIAFAGFYPGSPSVEVNLNCDRSSAHHVRESLKRSLAVSD*
Ga0099827_100030743	3300009090	Vadose Zone Soil	MERSDVQRMADSVLRDYGVPMKVATIVRADSGWTIGFAAKFTGAPAVEVLLRCDRNSAHHVRESLKRSLQLTD*
Ga0105245_119643522	3300009098	Miscanthus Rhizosphere	MQLNDVQRMADSVLREYGVPMKVSGISAADTGWTIAFAGFYPGSPALEVSLASNRSSAHHVRESLKRSLAVSD*
Ga0105245_129754882	3300009098	Miscanthus Rhizosphere	WRVVCNLCQQGGDMERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVSD*
Ga0105247_113618451	3300009101	Switchgrass Rhizosphere	MERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVCD*
Ga0105242_108782442	3300009176	Miscanthus Rhizosphere	MERTDVQRMADSVLRDYGVPLKVSNISAAEAGWTIAFSGYPGSPLKQVSLRCGDRSSVHHVRESLKRSLDVCD*
Ga0105248_104354342	3300009177	Switchgrass Rhizosphere	MERTDVQRMADSVLRDYGVPLKVSNISAAEAGWTIAFSGYPGSPLKQVSLRCGDRSSVHHVRESLKRSLDVGD*
Ga0105248_106881642	3300009177	Switchgrass Rhizosphere	MERTDVQRMADSVLREYGVPMKVSAISPVATGWTIAFSSFYAGSPVLEVNVRSDRSSAHHVRESLKRSLNVSD*
Ga0105248_132087911	3300009177	Switchgrass Rhizosphere	MDLNDVQKMADSVLREYAVPMRVSMISPDPAGWTVAFAGRYPGLPPVEVKLGCNKSSAHHVRESLKRGLAVCD*
Ga0105858_12669982	3300009661	Permafrost Soil	MERTDVQQMADSVLRDYGVPMKVAAISPAEAGWTVAFAGSFPGAPSIEVSLGCGLASAYHVRE*
Ga0126307_103510841	3300009789	Serpentine Soil	MERTDVQRMADSVLREYGVPLKVSSISMMDAGWSIAFDSFYPGGPGKQVDLRCDRNSAHHVRESLKRSLSIGDY*
Ga0126307_116468281	3300009789	Serpentine Soil	MERTDVQRMADSVLRDYGVPMRVSGIAMAEAGWTIAFDSFYPGRPGKLVDLRCDRNSAHHVRESLKRSLSVTDSEY*
Ga0126308_106396861	3300010040	Serpentine Soil	MERTDVQRMADSVLRDYGVPMRVSGIAMADTGWTIAFDSCYPGRPGKLVDLRCDRNSAHHVRESLKRSLSVTDSEY*
Ga0126306_113850832	3300010166	Serpentine Soil	MHPTDLQRMADSVLRDYGVPLKVAQISEVEAGWTIAFSAARPGGLPRQVRLRCGERSSMHHVRESLKR
Ga0134127_112573702	3300010399	Terrestrial Soil	MVSTDLQRMADSVLRDYGVPLKVSEISEIDAGWTIAFTASRPGGAAKQVSLRCGARSSMHHVRESLKRGLDVSD*
Ga0134127_135284212	3300010399	Terrestrial Soil	WKAVCEQVAGGDMESTDLQRMADSVLRDYGVPLKVAQISAVEAGWTIAFSAARPGGLPRQVSLRCGEHSSMHHVRESLKRGLDVSD*
Ga0134122_103600442	3300010400	Terrestrial Soil	MERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVILRCGERSSIHHVRESLKRSLDVSD*
Ga0134122_128362971	3300010400	Terrestrial Soil	MADSVLRDYGVPLKVSMISIAEAGWTIAFSGFPGTPLKQVNLRCGERSSAHHVRESLKRCLDVGD*
Ga0134122_130937392	3300010400	Terrestrial Soil	SVLRDFAVPLKVSAISIADAGWTIAFDSFYPGRPGKQVDLRCDRNSAHHVRESLKRSLSLTDY*
Ga0137438_11350062	3300011431	Soil	MERTDVQRMADSVLRDYGVPMKVSAISPVEAGWTIAFSSLYAGSPLLEVKVNSDRSSAHHVRESLKRSLDVSD*
Ga0137399_100221321	3300012203	Vadose Zone Soil	MERSDVQRMADSVLRDYGVPMKVATIVPADSGWTIGFAAKFTGAPAVEVLLRCDRNSAHHVRES
Ga0150985_1022147063	3300012212	Avena Fatua Rhizosphere	VLDEATTMERIDVQRMADSVLREYGVPMRVSTISAAAAGWTVAFAGFYPGSKPMEISLSCERSSAYHIRESLKRSLDLTD*
Ga0150985_1042614451	3300012212	Avena Fatua Rhizosphere	TMDRMDVQRMADSVLREYGVPMKVSTISAAAAGWTVAFAGFYPGSKPMEVNLACERSSAYHVRESLKRSLDLAD*
Ga0150985_1090267732	3300012212	Avena Fatua Rhizosphere	QRRRGLARTLPSRLMGGDMERVDVQRMADSVLRDYGVPLKVSRISLATAGWTIAFDSFYPGRPGKQVDLRCDRNSPHHVRESLKRSLSVTDSDY*
Ga0150985_1117357992	3300012212	Avena Fatua Rhizosphere	MERTDVQRLADSVLRDYGVPMKVSTISAAASGWTIAFAGFYGGARSIEVSLNCERSSPYLLRESLKKSLNVGD*
Ga0150985_1119115492	3300012212	Avena Fatua Rhizosphere	MELNDVQRMADSVLREYGVPMKVSGISAAAAGWTIAFAGHYPGAPSMQVNLNCGRSSAHHVRESLKRSLAVSD*
Ga0150985_1132473871	3300012212	Avena Fatua Rhizosphere	MELNDLRRMANSVLSDYGVPMKVAGISAANSGWTIAFAGFYPGSPALEVNLASDRRSAHHMRESLKRSLAVSD*
Ga0150985_1140387302	3300012212	Avena Fatua Rhizosphere	MERTDVQRMADSVLRDYGVPLKVAAISMVDAGWTIAFDSFYAGRPGKQVDLRCDRNSAHHVRESLKRSLSLIDD*
Ga0150984_1103213431	3300012469	Avena Fatua Rhizosphere	MGGDMERVDVQRMADSVLRDYGVPLKVSRISLATAGWTIAFDSFYPGRPGKQVDLRCDRNSPHHVRESLKRSLSVTDSDY*
Ga0150984_1109203112	3300012469	Avena Fatua Rhizosphere	MELNDVQRMADSVLREYGVPMKVSGISAAAAGWTIAFAGHYPGAPSIQVNLNCGRSSAHHVRESLKRSLAVSD*
Ga0150984_1200508791	3300012469	Avena Fatua Rhizosphere	MERIDVQRMADSVLREYGVPMKVSTISAVAAGWTVAFAGFYPGSKPMEVNLTCDRSSAYHIRESLKRSLDVAD*
Ga0150984_1221061252	3300012469	Avena Fatua Rhizosphere	LDDLRRMANSVLCDYGVPMKVSEISAVNSGWTIAFAGFYPGSPALEVNLASDRRSAHHMRESLKRSLAVSD*
Ga0150984_1224660452	3300012469	Avena Fatua Rhizosphere	ATISPVAAGWTVAFTSRYPGSPSVEVRLGCDKSSVHHVRESLKRGLSVCD*
Ga0137413_116005282	3300012924	Vadose Zone Soil	MERTDVQRMADSVLRDYGVPMKVSAISPVEAGWTIAFSSFYAGSPLLEVNVRSDRSSAHHVRESLKRSLDVCD*
Ga0137419_118014621	3300012925	Vadose Zone Soil	MTMERTDVQRMADSVLRDYGVPMKVSAISAVEAGWTIAFSSFYAGSPLLEVNVRSDRSSAHHVRESLKRSLDVSD*
Ga0137407_112182612	3300012930	Vadose Zone Soil	MERTDVQRMADSVLRDYGVPMKVSAISPVEAGWTIAFSSFYAGSPLLEVNVRSDRSSAHHVRESLKRSLDVSD*
Ga0164309_115269292	3300012984	Soil	MERADVQRMADSVLREYGVPMKVSAISPVEAGWTIAFSSLYAGSPSIEVNVSSDRASAHHVRESLKRSLDLSD*
Ga0163162_132224381	3300013306	Switchgrass Rhizosphere	GGDMERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGQRSSIHHVRESLKRSLDVCD*
Ga0163162_132904811	3300013306	Switchgrass Rhizosphere	GGDMERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGERSSIHHVRESLKRSLDVCD*
Ga0157375_135597742	3300013308	Miscanthus Rhizosphere	MERADVQRMADSVLREYGVPMKVSAISAADAGWTIAFSSLYAGSPSIEVNVSSDRASAHHVRESLKRSLDLSD*
Ga0157380_125076391	3300014326	Switchgrass Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAQISVVDAGWTIAFASARPGGLPRQVSLRCSERSSMHHVRESLKRGLDLSD*
Ga0182021_102199904	3300014502	Fen	MERTDVQRMADSVLREYGVPMKVSSISAVASGWTIGFVGFHPNAPLLEVNLRCGGSSIHHVRESLKQSLSVCD*
Ga0167628_10495523	3300015165	Glacier Forefield Soil	MERTDVQRMADSILREYGVPMKVSMISPAVAGWTIEFAGCYPGSPAFEVSLRCDRNSVHHVRESLKKSLAVCD*
Ga0167646_10454232	3300015192	Glacier Forefield Soil	MDLNDVQRMADSVLREYGVPMKVSTISPAAAGWTIAFASSYAGAPAIEVNLPCDRSSAHHVRESLKKSLAVGD*
Ga0137403_103499312	3300015264	Vadose Zone Soil	MERTDLQRMADSVLRDYGVPMKVSAISPVEAGWTIAFSSFYAGSPLLEVNVRSDRSSAHHVRESLKRSLDVCD*
Ga0163161_113832972	3300017792	Switchgrass Rhizosphere	MELNDVQRMADSVLRDYGVPMKVSMISPAPAGWTIAFAGRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD
Ga0184609_103833931	3300018076	Groundwater Sediment	PCNLDHPGGDMERTDVQRMADSVLRDYGVPLKVSMISVAEAGWTIAFSGFPGTPLKHVNLRCGERSSVHHVRESLKRCLDVSD
Ga0066662_117508541	3300018468	Grasslands Soil	MDFDDVKRMATSVLREYGVPMKVSGILAVDTGWTIAFAGCYPGSPALEVSVASGRNSAHHVRESLKRSLAVSD
Ga0190274_105298862	3300018476	Soil	MERIDVQRMADSVLREYGVPLTVSTISAAEAGWSIAFAGSYPGSPLKQVLLRCGERSSIHHVRESLKRSLDVCD
Ga0193743_12370011	3300019889	Soil	MDRTDVQRMADSVLRDYGVPMKVSAISAADAGWTIAFDSSYPGVPGKRVDLRCDRNSAHHVRESLKRGLSLTD
Ga0193728_11534693	3300019890	Soil	MERTDVQRMADSVLRDYGVPMKVSAISPVEAGWTIAFTSLYAGSPLLEVNVKSDRSSAHHVRESLKRSLDVSD
Ga0193693_10168962	3300019996	Soil	MELNDVQRMADSVLREYGVPMTVSTISPVAAGWTVAFTSRYPGSPSVEVRLGCDKSSVHHVRESLKRGLSVYD
Ga0193753_100780153	3300020034	Soil	NRWPKTCKLGYTETTMELNDVQRMADSVLRDYGVPMKVSMISPAPAGWTIAFASRYPGSPSVEVKLGCEKSSMHHVRESLKRGLSLSD
Ga0210378_103591992	3300021073	Groundwater Sediment	MERTDVQRMADSVLRDYGVPLKVSMISVAEAGWTIAFSGYPGAPLKHVNLRCGERSSVHHVRESLKRCLDVSD
Ga0210382_103850162	3300021080	Groundwater Sediment	ERRAASGEMQRTDVQRLADSVLREYGVPLKVSTISAAEAGWTIAFSGYYPGSPLKHVNLRCCERSSVHHVRESLKRSLDVSD
Ga0210408_103389351	3300021178	Soil	LVARRAGATMERTDVQRMADSVLRDYGIPMRVSAISAAEAGWTIAFSSLYAGSPVLQVNVSSDRNSAHHVRESLKRSLDVSD
Ga0210410_114479701	3300021479	Soil	MELHEVQRMADSVLREYGVPMKVSTICAAAAGWTIAFAGAYPGTPSVEVNLNCDRSSVHHVRESLKKSLAVCD
Ga0222622_100361643	3300022756	Groundwater Sediment	MERTDVQRMADSVLRDYGVPLKVSMISIAEAGWTIAFSGCPGTPLKQVNLRCGERSSVHHVRESLKRGLDVSD
Ga0222622_109524242	3300022756	Groundwater Sediment	MERTDVQRMADSVLRDYGVPLKVSMISIAEAGWTIAFSGPGTPLKQVNLRCGERSSVHHVRESLKRSLDVSD
Ga0247661_10455772	3300024254	Soil	MELNDVQRMADSVLREYGVPMTVSTISPVAAGWTVAFTSRYPGFPSVEVRLGCDKSSVHHVRESLKRGLSVCD
Ga0207656_107133152	3300025321	Corn Rhizosphere	MELNDVQRMADSVLRDYGVPMTVSTISPAAAGWTVAFASRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD
Ga0207642_111192161	3300025899	Miscanthus Rhizosphere	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGQRSSIHHVRESLKRSL
Ga0207710_103197081	3300025900	Switchgrass Rhizosphere	MERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVSD
Ga0207680_104250501	3300025903	Switchgrass Rhizosphere	MEINDVQRMADSVLREYGVPMRVATISPVAAGWTVAFTSRYPGSPSVEVRLGCDKSSVHHVRESLKRGLSVCD
Ga0207701_104777272	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAQISEVDAGWTIAFASARPGGLPRQVSLRCSERSSMHHVRESLRRGLDLSD
Ga0207701_104996952	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGQRSSIHHVRESLKRSLDVCD
Ga0207686_107588341	3300025934	Miscanthus Rhizosphere	MERSDVQRMADSVLRDYCVPMKIASIVPADCGWTIGFAGNFPGSPSVQVVLRCDRNSAHHVRESLKRSLALTD
Ga0207704_100802942	3300025938	Miscanthus Rhizosphere	MELNDVQRMADSVLRDYGVPMKVSMISPAPAGWTIAFAGRYPGSPSVEVKLGCDKSSMHH
Ga0207661_101484813	3300025944	Corn Rhizosphere	MELDDVQRMADSVLREYGLPMKVATISPAAAGWTIAFAGHYPGSLPVHVNLSCHRSSPYHVRESLKKSLALCDD
Ga0207640_110810922	3300025981	Corn Rhizosphere	PLAEDLKLGGVETTMEFNDVQRMATSVLREYGVPMKVSGISAVETGWTIAFAGFYPGSPALEVNVASDRSSAHHVRESLKRSLAVSD
Ga0207703_115187791	3300026035	Switchgrass Rhizosphere	SSASRRDPMEINDVQRMADSVLREYGVPMRVATISPVAAGWTVAFTSRYPGSPSVEVRLGCDKSSVHHVRESLKRGLSVCD
Ga0207708_100117554	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MESTDLQRMADSVLRDYGVPLKVAQISAVEAGWTIAFSAARPGGLPRQVSLRCGEHSSMHHVRESLKRGLDVSD
Ga0207648_102961243	3300026089	Miscanthus Rhizosphere	RMAQSVLRDYGVPIKVSMISPAPASWTIAFAGRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD
Ga0207675_1003880281	3300026118	Switchgrass Rhizosphere	ADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGERSSIHHVRESLKRSLDVCD
Ga0207675_1009882562	3300026118	Switchgrass Rhizosphere	LAWRVVCNLCQQGGDMERTDVQRMADSVLRDYGVPLKVSDISAAEAGWTIAFSGYPGSPLKQVSLRCGERSSIHHVRESLKRSLDVSD
Ga0257166_10495561	3300026358	Soil	MERSDVQRMADSVLRDYGVPMKVATIVPADSGWTIGFAAKFTGAPAVEVLLRCDRNSAHHVRESLKRSLQLTD
Ga0179593_11553214	3300026555	Vadose Zone Soil	MELNDVQRMADSVLREYGVPMKVSMISPAPAGWTVAFASRYPGAPSVEVKLGCHHSSAHHVRESLKRGLSVYD
Ga0209590_100041392	3300027882	Vadose Zone Soil	MERSDVQRMADSVLRDYGVPMKVATIVRADSGWTIGFAAKFTGAPAVEVLLRCDRNSAHHVRESLKRSLQLTD
Ga0209068_103455092	3300027894	Watersheds	MERTDLQRMADSVLRDYGVPMKVSAISAAEAGWTIAFSSIYAGSPLLQVNVSSDRTSAHHVRESLKRSLDVSD
Ga0209488_111489972	3300027903	Vadose Zone Soil	MELQDVQRMADSVLRDYGVPMKVSTISAAAAGWRIGFAGSYPGSPSFEVNLNCDRNSMHHVRESLKKSLAVCD
Ga0209583_101476182	3300027910	Watersheds	MMERLDVQRLADSVLRDYAVPMKVATISAAAAGWTIAFAGFYAGSRSVEVNLNCDRSSAYHVRESLKKSLDVCD
Ga0209069_104761932	3300027915	Watersheds	MMERLDVQRLADSVLRDYAVPMKVSTISAAAAGWTIAFAGFYAGSRSVEVNLNCDRSSAYHVRESLKKSLDVCD
Ga0268265_104303811	3300028380	Switchgrass Rhizosphere	MERIDVQRMADSVLRDYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGERSSIHHV
Ga0307280_102633732	3300028768	Soil	MERTDVQRMADSVLRDYGVPMKVSAISPVEAGWTIAFSSFYAGSPLLEVNVRSDRSSAHHVRESLKRSLDVSD
Ga0308202_10755881	3300030902	Soil	DSVLRDYGVPLKVSMISIAEAGWTIAFSGCPGTPLKQVNLRCGERSSVHHVRESLKRGLDVSD
Ga0308206_11251192	3300030903	Soil	RAPCNLCQSGGDMERTDVQRMADSVLRDYGVPLKVSMISVAEAGWTIAFSGYPGTPLKQVNLRCCERSSVHHVRESLKRGLDLSD
Ga0308200_10846211	3300030905	Soil	ERIDVQRLADSVLREYRVPLKVSTISAAEAGWAIAFAGSYPGSPLKQVLLRCGERSSIHHVRESLKRSLDVLD
Ga0075386_115428591	3300030916	Soil	MELNDVQRMANSVLRDYGVPMTVSTISPAAAGWTVAFASRYPGSPSVEVKLGCDKSSMHHVRESLKRGLSVCD
Ga0308190_10615841	3300030993	Soil	MESTDVQRMADSVLRDYGVPLKVSMISIAEAGWTIAFSGCPGTPLKQVNLRCGERSSVHHVRESLKRGLDVSD
Ga0102746_109615872	3300031054	Soil	VQRMADSVLREYGVPLKVSTISAAEAGWAIAFAGSYPGSPLKRVMLRCGAHSSIHHVRESLKRSLDVCD
Ga0170824_1114552481	3300031231	Forest Soil	MERADVQRMADSVLREYGVPMKVSAISAADTGWTIAFSSLYAGSPSIEVNVSSDRASAHHVRESLKRSLDVSD
Ga0170824_1174077112	3300031231	Forest Soil	MELNDVQRMANSVLRDYGVPMTVSTISPAAAGWTIAFASRYPGSPSVEVKLGCDKSSVHHVRESLKRGLSVCD
Ga0170818_1091018051	3300031474	Forest Soil	MERADVQRMADSVLREYGVPMKVSAISAIDAGWTIAFSSLYAGSPSIEVNVSSDRASAHHVRESLKRSLDVSD
Ga0370541_027737_3_224	3300034680	Soil	MERIDVQRLADSVLRDYAVPLKVATISVAEAGWTIAFAGSRPGMPPVEVLLRCDRSSAYHVRESLKRSLSVGD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063047

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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