Metagenome / Metatranscriptome Family F062974

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062974
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	92 residues
Representative Sequence	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEK
Number of Associated Samples	112
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.23 %
% of genes near scaffold ends (potentially truncated)	99.23 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.923 % of family members)
Environment Ontology (ENVO)	Unclassified (36.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 28.07% β-sheet: 0.00% Coil/Unstructured: 71.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00348	polyprenyl_synt	44.62
PF00814	TsaD	4.62
PF03572	Peptidase_S41	1.54
PF13180	PDZ_2	0.77
PF03544	TonB_C	0.77
PF05960	DUF885	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	44.62
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	4.62
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	4.62
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	1.54
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.77
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.08 %
Unclassified	root	N/A	16.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.08 %
Unclassified	root	N/A	16.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.08 %
Unclassified	root	N/A	16.92 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	43.08 %
Unclassified	root	N/A	16.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.77 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	43.08 %
Unclassified	root	N/A	16.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.54 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	21.54 %
Unclassified	root	N/A	16.92 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	9.23 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.54 %
Unclassified	root	N/A	16.92 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	8.46 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.54 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.77 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.77 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.54 %
Unclassified	root	N/A	16.92 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	8.46 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.54 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.54 %
Unclassified	root	N/A	16.92 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	4.62 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.54 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	1.54 %
Mesorhizobium ciceri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	0.77 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.77 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.54 %
Unclassified	root	N/A	16.92 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4.62 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.54 %
Pseudomonas syringae group genomosp. 1	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1	1.54 %
Mesorhizobium ciceri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	0.77 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.77 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.54 %
Unclassified	root	N/A	16.92 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4.62 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	1.54 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.54 %
Mesorhizobium ciceri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	0.77 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0781493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300000890\|JGI11643J12802_11215112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300000956\|JGI10216J12902_103905190	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300000956\|JGI10216J12902_111393753	Not Available	506	Open in IMG/M
3300000956\|JGI10216J12902_126464821	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300002128\|JGI24036J26619_10024965	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300002128\|JGI24036J26619_10102103	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300004114\|Ga0062593_100637740	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1025	Open in IMG/M
3300004157\|Ga0062590_101992788	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	602	Open in IMG/M
3300004463\|Ga0063356_104226882	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300004479\|Ga0062595_100038838	All Organisms → cellular organisms → Bacteria	2056	Open in IMG/M
3300004480\|Ga0062592_102007095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300004643\|Ga0062591_100806369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	867	Open in IMG/M
3300005174\|Ga0066680_10964656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300005175\|Ga0066673_10045723	All Organisms → cellular organisms → Bacteria	2185	Open in IMG/M
3300005175\|Ga0066673_10700020	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005180\|Ga0066685_10946719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300005187\|Ga0066675_10296626	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300005290\|Ga0065712_10044063	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005293\|Ga0065715_10613371	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005294\|Ga0065705_10949242	Not Available	561	Open in IMG/M
3300005328\|Ga0070676_11619827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	500	Open in IMG/M
3300005329\|Ga0070683_101430283	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005332\|Ga0066388_104363527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300005335\|Ga0070666_10575504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	821	Open in IMG/M
3300005339\|Ga0070660_100208877	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300005356\|Ga0070674_102114431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300005366\|Ga0070659_101771971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	553	Open in IMG/M
3300005439\|Ga0070711_100247736	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300005455\|Ga0070663_101914072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	533	Open in IMG/M
3300005457\|Ga0070662_101620351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300005548\|Ga0070665_100792341	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300005548\|Ga0070665_102182642	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005553\|Ga0066695_10207728	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300005556\|Ga0066707_10080016	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300005559\|Ga0066700_10908372	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300005719\|Ga0068861_101353753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	694	Open in IMG/M
3300005764\|Ga0066903_100230944	All Organisms → cellular organisms → Bacteria	2822	Open in IMG/M
3300005764\|Ga0066903_108143827	Not Available	537	Open in IMG/M
3300005842\|Ga0068858_101907665	Not Available	587	Open in IMG/M
3300005843\|Ga0068860_101487306	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300006034\|Ga0066656_10137820	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300006046\|Ga0066652_101285245	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300006175\|Ga0070712_100052448	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300006175\|Ga0070712_101264756	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300006175\|Ga0070712_101482623	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300006175\|Ga0070712_101699121	Not Available	552	Open in IMG/M
3300006914\|Ga0075436_100921044	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300009012\|Ga0066710_100139095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3351	Open in IMG/M
3300009094\|Ga0111539_12831753	Not Available	562	Open in IMG/M
3300009098\|Ga0105245_10533427	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300009101\|Ga0105247_10742048	Not Available	743	Open in IMG/M
3300009148\|Ga0105243_10844722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	906	Open in IMG/M
3300010335\|Ga0134063_10141554	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1112	Open in IMG/M
3300010400\|Ga0134122_13033173	Not Available	524	Open in IMG/M
3300011119\|Ga0105246_10311705	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300012022\|Ga0120191_10177716	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300012198\|Ga0137364_10258815	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300012202\|Ga0137363_10744941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	830	Open in IMG/M
3300012360\|Ga0137375_10966886	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300012469\|Ga0150984_104481895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300012498\|Ga0157345_1030169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300012892\|Ga0157294_10211734	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300012906\|Ga0157295_10024903	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300012955\|Ga0164298_11155537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300012957\|Ga0164303_10604381	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300012958\|Ga0164299_10717519	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300012984\|Ga0164309_10499161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	931	Open in IMG/M
3300012984\|Ga0164309_11937480	Not Available	505	Open in IMG/M
3300012985\|Ga0164308_12011412	Not Available	539	Open in IMG/M
3300012988\|Ga0164306_10784205	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300013096\|Ga0157307_1153898	Not Available	537	Open in IMG/M
3300013306\|Ga0163162_12365770	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300013308\|Ga0157375_10033915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4856	Open in IMG/M
3300013308\|Ga0157375_11767650	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300015077\|Ga0173483_10071236	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300015356\|Ga0134073_10007771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2324	Open in IMG/M
3300015371\|Ga0132258_13055264	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300015373\|Ga0132257_100242268	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2150	Open in IMG/M
3300015374\|Ga0132255_102612344	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300018028\|Ga0184608_10154303	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	991	Open in IMG/M
3300018482\|Ga0066669_10029503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3217	Open in IMG/M
3300019879\|Ga0193723_1004670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4726	Open in IMG/M
3300019879\|Ga0193723_1083852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	911	Open in IMG/M
3300019881\|Ga0193707_1111687	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300019886\|Ga0193727_1058481	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300020010\|Ga0193749_1100844	Not Available	515	Open in IMG/M
3300020199\|Ga0179592_10386208	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300021086\|Ga0179596_10688741	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300021344\|Ga0193719_10124505	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1119	Open in IMG/M
3300021344\|Ga0193719_10454748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300022534\|Ga0224452_1023051	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1750	Open in IMG/M
3300023266\|Ga0247789_1136649	Not Available	508	Open in IMG/M
3300025290\|Ga0207673_1060928	Not Available	537	Open in IMG/M
3300025898\|Ga0207692_10905869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300025905\|Ga0207685_10309280	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300025915\|Ga0207693_11060653	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300025918\|Ga0207662_11079073	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300025927\|Ga0207687_10458097	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1059	Open in IMG/M
3300025930\|Ga0207701_10557264	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	978	Open in IMG/M
3300025930\|Ga0207701_10980523	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300025932\|Ga0207690_11277514	Not Available	613	Open in IMG/M
3300025936\|Ga0207670_11499499	Not Available	573	Open in IMG/M
3300025937\|Ga0207669_11942390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300025944\|Ga0207661_11056445	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300025945\|Ga0207679_10328814	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300025986\|Ga0207658_10643563	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	955	Open in IMG/M
3300026067\|Ga0207678_11262443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	654	Open in IMG/M
3300026067\|Ga0207678_11559316	Not Available	582	Open in IMG/M
3300026316\|Ga0209155_1014745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3358	Open in IMG/M
3300026528\|Ga0209378_1024426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3293	Open in IMG/M
3300026536\|Ga0209058_1170114	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300026538\|Ga0209056_10692718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300026557\|Ga0179587_10950998	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300027512\|Ga0209179_1060074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	824	Open in IMG/M
3300027748\|Ga0209689_1216332	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	824	Open in IMG/M
3300027903\|Ga0209488_10063128	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2738	Open in IMG/M
3300028379\|Ga0268266_10024726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	5110	Open in IMG/M
3300028379\|Ga0268266_11561086	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300028381\|Ga0268264_10832455	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300028811\|Ga0307292_10022139	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2246	Open in IMG/M
3300028824\|Ga0307310_10672835	Not Available	530	Open in IMG/M
3300028828\|Ga0307312_10816389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	618	Open in IMG/M
3300028885\|Ga0307304_10354969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	656	Open in IMG/M
3300030854\|Ga0075385_11269329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	656	Open in IMG/M
3300030945\|Ga0075373_11619629	Not Available	508	Open in IMG/M
3300031057\|Ga0170834_108591473	Not Available	584	Open in IMG/M
3300031474\|Ga0170818_106543736	Not Available	520	Open in IMG/M
3300031474\|Ga0170818_113351287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300031474\|Ga0170818_115532916	Not Available	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.23%
Host-Associated	Host-Associated	30.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.69%
Plants	Host-Associated → Plants	30.77%
Aquatic	Environmental → Aquatic	1.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Sediment	Environmental → Aquatic → Sediment	1.54%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.85%
Loam	Environmental → Terrestrial → Soil → Loam	13.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.54%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	3.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.08%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.08%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.54%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.77%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_07814931	2228664022	Soil	MNPALLHRQNGRSTFWIAFMSALAIHIGAVALAKTRSPTAKLEDVSQPGDVEVIDAAEPEPALEQSVTPPPLEQIHPDQDSFPEEDHKPSP
JGI11643J12802_112151122	3300000890	Soil	MNPALLHRQHGRSIFWIAFMSAIAIHLGAVALAKNKSPVAKLEHFTPPGAVDIVDASEQEPAPEESVTPPPLEEI
JGI10216J12902_1039051902	3300000956	Soil	MNPALVHPQHGRCIFWIAFMSALAIHLGAVALAKTKSPTSKLEDFGPPGDVELVDPTEPEPALPEDTV
JGI10216J12902_1113937531	3300000956	Soil	MNPALLHRQHGRSIFWIAFMSAIAIHLGAVALAKNKSPVAKLEHFTPPGAVDIVDASEQEPAPEESVTPPPLEEIHPDQDSFQERNLTPPAIRTHRKVRPT
JGI10216J12902_1264648212	3300000956	Soil	MKSALLYRQHGRSILWIAFVSAIAIHLGAVALAKTKPPIAKLEYFIVGVVELVDTSEPDPPLLQELVTPPPLEEI
JGI24036J26619_100249652	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHRK
JGI24036J26619_101021032	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQ
Ga0062593_1006377402	3300004114	Soil	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEENVTPPLVRAHRNARPAALVRGTTTASLRSVKA
Ga0062590_1019927881	3300004157	Soil	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIYPDQDSFQEKNLMPPPIHAH
Ga0063356_1042268821	3300004463	Arabidopsis Thaliana Rhizosphere	MNPAFLYRRKGRSIFWLAFFFALAIHIGAVALAKTKSPSNKLQDVTPLPDVEVVDTAEPEPALLEESAPPPPLEQIHPDQ
Ga0062595_1000388383	3300004479	Soil	MNPALLHRQHGRSIFWIAFMSAIAIHLGAVALAKNKSPVAKLEHFTPPGAVDIVDASEQEPAPEESVTPPPLEEIHPDQDSFQERNLTPPAIRTHRKVRPTSLVRGTTATPSLRSVKAMVAYAPCPVY
Ga0062592_1020070952	3300004480	Soil	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQ
Ga0062591_1008063691	3300004643	Soil	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHI
Ga0066680_109646562	3300005174	Soil	MNSALLYRQHGRCIFWIAFMSALAIHLGAVALAKTKPPTTKLEDVSPLGDVELVDVAESEPALEESVT
Ga0066673_100457231	3300005175	Soil	MNSALLYRQHGRCIFWIAFISALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVTSPPLEQIHPDQDS
Ga0066673_107000201	3300005175	Soil	MNPAFVYRQHDRSIFWIAFMSALAIHLGAAALAKTKSPPVTLEDFNPPSDVELVDTAEPEPALPEESATAPPLEQIHPDQD
Ga0066685_109467192	3300005180	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPDPALLEESATPPPLEPIY
Ga0066675_102966262	3300005187	Soil	MNSAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPPTLEDFNPPGDVELIDTAEPEPALLEESVTPPPLEQIHPDQ
Ga0065712_100440632	3300005290	Miscanthus Rhizosphere	MNPAXLYRRXGRSIFWLAFFFALAIHXGAVALAKTKSPSNKLQDVTPLSDVEVVGTAEPEPALEESAPPPPLEQ
Ga0065715_106133712	3300005293	Miscanthus Rhizosphere	MNPALLYRRNGRSIFWLAFFFALAIHLGAVALAKTRSPSIKLQDVSPLPDVEVVDTAEPEAALLEESTPPPPLEQIHPDHDRFQEENLAPLPIRAHRTARPPSIVGGTTASLRSVKAK
Ga0065705_109492421	3300005294	Switchgrass Rhizosphere	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHR
Ga0070676_116198271	3300005328	Miscanthus Rhizosphere	MNPAFVYRQHGRSIFWIAFISALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQLHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGT
Ga0070683_1014302831	3300005329	Corn Rhizosphere	MNPAILYRRNGRSIFWLAFFFALAIHLGAVALAKTKSPSNKLQDVTPLSDVEVVGTAEPEPALEESAPPPPLEQIHPDQ
Ga0066388_1043635272	3300005332	Tropical Forest Soil	MNPAFLHRQHGRSIFWIAFMSAIAIHLGAVALAKNKSPVAKVEHFTPPSAVDIVDASEQEPAPEESVTPPPLEEIHPDQDSFQERNLTPPPIRAHRKVRPTSLIRGTTATPSLRSVKAMVAYAPRPVYP
Ga0070666_105755042	3300005335	Switchgrass Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEENVT
Ga0070660_1002088773	3300005339	Corn Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEE
Ga0070674_1021144312	3300005356	Miscanthus Rhizosphere	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPL
Ga0070659_1017719711	3300005366	Corn Rhizosphere	MNPALLYRQRGPSIFWIAFMTALAIHLAAVALAKTKSPIRKLEDFRPPADALLVDIAEPAPASPEESITPPPLEQIHPDQDNFRE
Ga0070711_1002477361	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNPALVYRQHGRCFFWIAFIGALAIHLGAVALAKTKSPLATPEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIHPDQD
Ga0070663_1019140721	3300005455	Corn Rhizosphere	MNPAFLYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLHSVKATVSYA
Ga0070662_1016203512	3300005457	Corn Rhizosphere	MNPALVYRQRGRSIFWIAFMSALAIHLGAVALGKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPP
Ga0070665_1007923411	3300005548	Switchgrass Rhizosphere	MNPALVYRQHGRCFFWIAFIGALAIHLGAVALAKTKSPLTTLEAFNPPGDVELVDTAEPEPALLEESATPPPLEQIHPDQDIFREENLTPPPIRAH
Ga0070665_1021826422	3300005548	Switchgrass Rhizosphere	MNPAFLYRRKGRSIFWLAFFFALAIHIGAVALAKTKSPSNKLQDVTPLPDVEVVDTAEPEPALLEES
Ga0066695_102077281	3300005553	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPPTLEDFNPPGDVELIDTAEPEPALLEESVTPPPLEQIHPDQDS
Ga0066707_100800163	3300005556	Soil	MNPALLYRRHGRCIFWIAFVTALAIHLGAVALAKTKPSTTKLEDFSPPGDVELVDTAEPEPASLEESATPPPLEQIHPDQD
Ga0066700_109083722	3300005559	Soil	MNPAFIYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELIDTGEPEPALLEESATPPPLEQIHPDQDS
Ga0068861_1013537531	3300005719	Switchgrass Rhizosphere	MNLASVYPQNSRSIFWIALMSAFAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEH
Ga0066903_1002309444	3300005764	Tropical Forest Soil	MNPALLHRQNGRSIFWIAFMSALAIHIGAVALAKTRSPTAKLENVSQPGDVEVIDAAEPEPALEQSFTLPPLEEMHPDQDSFLEED
Ga0066903_1081438271	3300005764	Tropical Forest Soil	MNPALLYRHHGRSVLWIAFVSALAIHIGAVALAKTKSPTTRPEDFMPPPGDVDIVSASEPEPALLESVTPPPLEEIRPDQDVFREENVPHPPVRAYRKARPPSFARGTATASLRSVKAMVVYAPRPV
Ga0068858_1019076651	3300005842	Switchgrass Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEENVTPPLVRAHRNARPAALVRGTTTAS
Ga0068860_1014873062	3300005843	Switchgrass Rhizosphere	MNPASVHRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPP
Ga0066656_101378203	3300006034	Soil	MNSALLYRQHGRCIFWIAFISALAIHLGAVALAKTKPPTTKLEDVSPLGDVELVDVAESEPALEESVTPPPLEQIHLDQDSFREENVTPPSVRAHRKARPPSL
Ga0066652_1012852451	3300006046	Soil	MNPAFVYRQHDRSIFWIAFMSALAIHLGAAALAKTKSPPVTLEDFNPPSDVELVDTAEPEPALPEESATAPPLEQIHPD
Ga0070712_1000524484	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSSPATLEDFNPPGDVELVDTAEAEPALLEESVTPPPLEQIHPDQDSFREENLTPPPLRAHRK
Ga0070712_1012647562	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPALVYGQHGRSIFWIAFMSALAIHLGAVALAKTKSPPIMLEVFTPLDDLELVDTAEQEPALLDESATPPPLEQIHPD
Ga0070712_1014826231	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPALLYRRNGRSIFWLAFFFALAIHLGAVALAKTRSPSIKLQDVSPLPDVEVVDTAEPEAALLEESVPPPPLEQIHPDQDRFQEENL
Ga0070712_1016991211	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPALLYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEPALLEESVTPPPLEQIHPDQDSFREENLTPPPLRAHRK
Ga0075436_1009210441	3300006914	Populus Rhizosphere	MNPALLYRQHGRSIFWMAFMSALAIHLGAVAFAKTKSPTGKSEDFSPPGDVELIDIAEPEPALVEDSITPPLLEQIHPDQDSFRNENPTPPPV
Ga0066710_1001390951	3300009012	Grasslands Soil	MNSALLYRQHGRCIFWIAFISALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVT
Ga0111539_128317532	3300009094	Populus Rhizosphere	MFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIRPHRKARPPLVIGGA
Ga0105245_105334271	3300009098	Miscanthus Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEENVTPPLVRAHRNATPAALVRGTTTASLRSVKAMV
Ga0105247_107420481	3300009101	Switchgrass Rhizosphere	MFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIRAH
Ga0105243_108447221	3300009148	Miscanthus Rhizosphere	MSALAIHLGAVALGKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLHS
Ga0134063_101415541	3300010335	Grasslands Soil	MSALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVTSPPLEQIHPDQDSFREENVTPPSVRAHRKARPPSFVRGTTASLRSVKAMMAYA
Ga0134122_130331731	3300010400	Terrestrial Soil	MDMNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSTKLQDVSPLSDVEVVDTAEPEPALLEESAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLHSVKATVSYAPR
Ga0105246_103117052	3300011119	Miscanthus Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPD
Ga0120191_101777161	3300012022	Terrestrial	MNPALLYRQQGRSIFCIAFMSALAIHIGAVALAKTKLPTAKLEDFSPLGDVELVDAAEPEPALPEESATSPPLEQIHPDQHSF
Ga0137364_102588151	3300012198	Vadose Zone Soil	MNSALLYRQHGRCIFWIAFISALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVTSPPLEQIHPDQDSFREENVTPPSVRAHRKARPPSFVRGTTASLRSVKA
Ga0137363_107449411	3300012202	Vadose Zone Soil	MNPAFVYRQHGRSIFWIAFMSALVIHLGAVALAKTKSPLATLEDFNPPGDVELIDTGEPEPALVEESATLPP
Ga0137375_109668862	3300012360	Vadose Zone Soil	MSALAIHLGAVALAKTKSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPPPPVEQIHPDQDRFQEENLTPPPIRAHRKARPPSLIGGTTASLRSVK
Ga0150984_1044818951	3300012469	Avena Fatua Rhizosphere	SIFWIAFMSALAIHLGAVALAKTKSPINKLQDVTPLWDVEVVDTADPEPASLDEAAPPAPLEQFHPD*
Ga0157345_10301692	3300012498	Arabidopsis Rhizosphere	MNPALVYRRSGRSIFWIAFISALAIHLGAVALAKTKSPTTKLEDFSPPADVELVDTAEMQPALLEESAVPPPLEQIRPD
Ga0157294_102117342	3300012892	Soil	MNPAILYRRNGRSIFWLAFFFALAIHLGGVALAKTKSPSNKLQDVTPLSDVEVVDTAEPEPALLEESAPPPPLEQI
Ga0157295_100249032	3300012906	Soil	MFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLDQIHPDQHSFQEKNLMPPPIRAHRNARPPSVIGGTTASFRSVKAAVAYAPRP
Ga0164298_111555372	3300012955	Soil	MNPALVYRQHGRCIFWIAFIGALAIHLGAVALAKTKSPPITLEDFSPLDDLDLVDTAEPEPALLEESATPPPLEQIHPD
Ga0164303_106043812	3300012957	Soil	MNPALVYRRSGRSIFWIAFISALAIHLGAVALAKTKSPTTKLEDFSPPADVELVDTAETQPALLEESAVHPPLEEIRPDRDNFQEESITPPP
Ga0164299_107175191	3300012958	Soil	MNPAILYRRNGRSIFWLAFFFALAIHLGAVALAKTKSPSNKLQDVTPLSDVEVVDTAELEPALLEESAPPPPLEQIHPDEDSFQEKNLMPPPIRAHRKARP
Ga0164309_104991612	3300012984	Soil	MNPAFLYRRNGRSIFWLAFFFSLAIHLGAVALAKTKSPSTKLLDVSPLSDVEIVDTAESEPALLEESSPPPPLEQIHPDQDSFQEKNLMPPPIRAH
Ga0164309_119374802	3300012984	Soil	MNPALLYRRNGRSILWLAFFFALAIHLGAVALAKTRSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPPPPLEQIHPDQDRFQEEN
Ga0164308_120114122	3300012985	Soil	MSALAIHLGAVALAKTKSPSANLQDVSPLPDVEVVDTAEPEPALLEQSAPPPSLEQIHPDQDSFQEKNLTPPPIRAHRNARPPALIGGTTASLRSMKATVAY
Ga0164306_107842052	3300012988	Soil	MSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIPPDQDIFPEESLTSPPVRAHRQARPASLFRGTTVSLRSVKAM
Ga0157307_11538981	3300013096	Soil	MFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHRKARPTSVIGGTTGSLRS
Ga0163162_123657702	3300013306	Switchgrass Rhizosphere	MNPALVYRQHGRCIFWIAFIGALAIHLGAVALAKTKSPLATPEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIHPDQDIFRE
Ga0157375_100339155	3300013308	Miscanthus Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEENVTPPLVRAHRNARPAALVRGTTTASLRSVKAMVMYA
Ga0157375_117676501	3300013308	Miscanthus Rhizosphere	MNPALVYRQHGRCIFWIAFIGALAIHLGAVALAKTKSPLATPEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIHPDQDIFREENLPPPPVRAHRKARPESLFRGTTASLRS
Ga0173483_100712361	3300015077	Soil	MFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHRKARPTSVIGGTTGSLRSVKA
Ga0134073_100077711	3300015356	Grasslands Soil	MSALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVTSLPLEQIHPDQDSFREENVTPPSVRAHRKARPPSFVRGTTASLRSVKAMMA
Ga0132258_130552641	3300015371	Arabidopsis Rhizosphere	MNPAILYRRNGRSIFWLAFFFALAIHLGAVALAKTKSPSNKLQDVTPLSDVEVVDTAELEPALLEESAPPPPLEQIHPDEDSFQEKNLMPPPIRAHRKARPPSLIGGTTPSLRPVKA
Ga0132257_1002422683	3300015373	Arabidopsis Rhizosphere	MNPAILYRRNGRSIFWLAFFFALAIHLGGVALAKTKSPSNKLQDVTPLSDVEVVDTAELEPALLEESAPPPPLEQIHPDEDSFQEKNLMPPPIRAHRKARP
Ga0132255_1026123442	3300015374	Arabidopsis Rhizosphere	MNPAILYRRNGRSIFWLAFFFALAIHLGAVALAKTKSPSNKLQDVTPLSDVEVVDTAELEPALLEESAPPPPLEQIHPDEDSFQEKNLMPPPIRAHRKARPPSLIGGTTP
Ga0184608_101543031	3300018028	Groundwater Sediment	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPD
Ga0066669_100295031	3300018482	Grasslands Soil	MNSALLYRQHGRCIFWIAFMSALAIHLGAVALAKTKPPTTKLEDVSPLGDVELVDVAESEPALEESVTPPPLEQIHLDQDSFREEN
Ga0193723_10046701	3300019879	Soil	MSALAIHLGAVALAKTKSPPATPEDFIPPGDVELVDTAEPEPALLEESATPPPLEQIHPDQDIFREENLPPPPVRAHRKARPASLFRGTTASLRSVKAMV
Ga0193723_10838522	3300019879	Soil	MNPALVYRQHGRCIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEPALLKESATPPPLEQIPPDQ
Ga0193707_11116871	3300019881	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEK
Ga0193727_10584811	3300019886	Soil	MNPAFFYRQHGRCIFWIAFMSALAIHLGAVALAKTKLPPATLEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIPPDQDIFREENLTPPPV
Ga0193749_11008441	3300020010	Soil	MNPAFFYRQHGRCIFWIAFMSALAIHLGAVALAKTKSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPPPPLEQIHPDQDRFQEENLTPPPIRAHRKA
Ga0179592_103862082	3300020199	Vadose Zone Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLSAVALAKTKSPSIKLQDVSPLPDVEVVDTAEPEAALLEESA
Ga0179596_106887411	3300021086	Vadose Zone Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPLATLEDFNPPDDVELIDTGEPEPALLEESATPPPLEQIHPDQ
Ga0193719_101245051	3300021344	Soil	MNPAFFYRQHGRCIFWIAFMSALAIHLGAVALAKTKSPPATPEDFIPPGDVELVDTAEPEPALLEESATPPPLEQIPPDQD
Ga0193719_104547481	3300021344	Soil	MNPALVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPTTKLEDFSPAADLELVDTAETEPALVEESA
Ga0224452_10230511	3300022534	Groundwater Sediment	MNPALLYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPTTKLEDFSPPGDVELVDTAEPEPALLEESAMSPPLEQIHPDQDSFQEKNLTPP
Ga0247789_11366491	3300023266	Soil	MNPAFLYRRKGRSIFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIYPDQDSFQEKNLMPPPIHAHRKARPTSVIGGTTGSLRSVKATVAYA
Ga0207673_10609282	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MNPPVLYGQNGRSIFWIAFISALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKAR
Ga0207692_109058691	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MNPALLYRRNGRSIFWLAFFFALAIHLGAVALAKTRSPSIKLQDVSPLPDVEVVETAESEAALLEESAPPPPLEQIHPDQDGFQEENLTPP
Ga0207685_103092802	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MNPAFVYRQHGRSIFWVAFMSALAIHLGAVALAKTKSSPATLEDFNPPGDVELVDTAEAEPALLEESVTPPPLEQIHPDQDSFREENLTPPPLRAHRKAR
Ga0207693_110606532	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNPAFLYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPTAKPEDFSPPGDVELIDIAEPEPALVED
Ga0207662_110790731	3300025918	Switchgrass Rhizosphere	MNPPVLYGQNGRCIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLEHIRPDQDN
Ga0207687_104580971	3300025927	Miscanthus Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGDVELVVTAEKKPALLEESAVPSPLE
Ga0207701_105572642	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNPALVYRQRGRSIFWIAFMSALAIHLGAVALGKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQS
Ga0207701_109805232	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPI
Ga0207690_112775142	3300025932	Corn Rhizosphere	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLH
Ga0207670_114994991	3300025936	Switchgrass Rhizosphere	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHRKARPPSFIGGTTP
Ga0207669_119423901	3300025937	Miscanthus Rhizosphere	MNPALVYRQRGRSIFWIAFMSALAIHLGAVALGKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPP
Ga0207661_110564451	3300025944	Corn Rhizosphere	MNPASVYRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHRKARPPSF
Ga0207679_103288141	3300025945	Corn Rhizosphere	MNPPVLYGQNGRSIFWIAFVSALAIHLGAVALAKTKSPTAKLEDFSPPGNVELVVTAEKKPALLEESAVPSPLEHIRPDQDNFQEE
Ga0207658_106435632	3300025986	Switchgrass Rhizosphere	MNPALVYRQRGRSIFWIAFMSALAIHLGAVALGKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAAPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTA
Ga0207678_112624432	3300026067	Corn Rhizosphere	MNPALLYRQRGPSIFWIAFMTALAIHLAAVALAKTKSPIRKLEDFRPPADALLVDIAEPAPASPDGCSRKGCGGMPWTRR
Ga0207678_115593161	3300026067	Corn Rhizosphere	MNPAFLYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLHSVKATVSYAPRWVERLLARY
Ga0209155_10147451	3300026316	Soil	MNSALLYRQHGRCIFWIAFISALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVTSPPLEQIHPDQ
Ga0209378_10244264	3300026528	Soil	MNSALLYRQHGRCIFWIAFISALAIHLGAVALAKTKPPTTKLEDLSLLGDVELVDVAESEPALEESVTSPPLEQIHPDQDSFR
Ga0209058_11701141	3300026536	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAAALAKTKSPPVTLEDFNPPSDVELIDTAEPEPALPEESATA
Ga0209056_106927181	3300026538	Soil	MNPAFVYRQHGRSVFWIAFMSALAIHLGAVALAKTKSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPTPPL
Ga0179587_109509982	3300026557	Vadose Zone Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEPALLEESATPPPLERIA
Ga0209179_10600741	3300027512	Vadose Zone Soil	MNPALVYRQHGRCIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEAALLEESAPPPPLEQIHPDQDRFQE
Ga0209689_12163321	3300027748	Soil	MNPAFIYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELIDTGEPEPALLEESATPPPLEQTHPDQDSFPEENLTPPPV
Ga0209488_100631284	3300027903	Vadose Zone Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLSAVVLAKTKSPPATLEDFNPPGVELVDTAEPEPALLEESATPPPLEQIHPDQDIFRE
Ga0268266_100247261	3300028379	Switchgrass Rhizosphere	MNPASVHRRNGRSMFWLAFFFALAIHLGAVALANTKSPINKLQDVTPLWDVEVVDTVESESALLEESAPPPPLEQIHPDQDSFQEKNLMPPPIHAHRKARPPS
Ga0268266_115610861	3300028379	Switchgrass Rhizosphere	MNPALLYRRNGRSIFWLAFFFALAIHLGAVALAKTRSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPPPPLEQIHPDQDRFQEENLTPPPIRAHRKARPPSLIG
Ga0268264_108324552	3300028381	Switchgrass Rhizosphere	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAAPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLHSVKATVAYAPRSVYP
Ga0307292_100221391	3300028811	Soil	MNPAFFYRQHGRCIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIPPDQDIFREENLPPPAVRAHRKARPASLFRGTTASLRSVKAMVAYA
Ga0307310_106728351	3300028824	Soil	MNPALVYRQRGRSIFWIAFMGALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAEPEPALLEQSAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTTASLHSVKATV
Ga0307312_108163891	3300028828	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPPPPLEQIHPDQDSFQEKNLTPPPIRAHRKARPPSVIGGTT
Ga0307304_103549691	3300028885	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSPSIKLQDVSPLPDVEVVDTAEPEAALLEESAPPPPLEQIHPDQDRFQEENLTPPPIRAHRK
Ga0075385_112693291	3300030854	Soil	MNPAFVYRRYGRSIFWIAFMSALAIHLGAVALAKTKSPSTKLQDFSLLWDVEVIDTAEPEPALLEESTPPPALQDIHQDPDSFTEKNLTPPSIRAHRKPRPPSLLGGTTASLRSVKATVA
Ga0075373_116196291	3300030945	Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSSPATLEDFSPPGDVELVDTAEPEPALLEESVTPPPLEQIHPDQDSFREENLTPPRLRAHRKARPASLVRGTTASLRSVKAMVAYAPR
Ga0170834_1085914731	3300031057	Forest Soil	MNPAFVYRRYGRSIFWIAFMSALAIHLGAVALAKTKSPSAKLQDVSPLPDVEVVDTAESEPALLEQSAPPPSLEQIHPDQDSFQEENLTPPPIRAHRKARPPSLIGGTTASLRSVKATVA
Ga0170818_1065437361	3300031474	Forest Soil	MNPALVYGQHGRSIFWIAFMSALAIHLGAVALAKTKSPPITLEVFTVLDDLDLVDTAEPEPALLEESATPPPLEQIHPDQDSFREENLTPPRLRAHRKARPASLVR
Ga0170818_1133512871	3300031474	Forest Soil	MNPALVYRQHGRCIFWIAFMSALAIHLGAVALAKTKSPPATLEDFNPPGDVELVDTAEPEPALLEESATPPPLEQIPPDQDIFR
Ga0170818_1155329161	3300031474	Forest Soil	MNPAFVYRQHGRSIFWIAFMSALAIHLGAVALAKTKSSPATLEDFSPPGDVELVDTAEPEPALLEESVTPPPLEQIHPDQDSFREENLTPPRLRAHRKARPASLVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062974

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences