Metagenome Family F062964

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062964
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	43 residues
Representative Sequence	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMRLKGIEASLK
Number of Associated Samples	83
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	97.69 %
% of genes from short scaffolds (< 2000 bps)	90.77 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.615 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.923 % of family members)
Environment Ontology (ENVO)	Unclassified (46.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.385 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.57% β-sheet: 0.00% Coil/Unstructured: 51.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF04519	Bactofilin	2.31
PF00498	FHA	1.54
PF06411	HdeA	1.54
PF14520	HHH_5	0.77
PF01402	RHH_1	0.77
PF01381	HTH_3	0.77
PF00196	GerE	0.77
PF13701	DDE_Tnp_1_4	0.77
PF08734	GYD	0.77
PF01041	DegT_DnrJ_EryC1	0.77
PF00561	Abhydrolase_1	0.77
PF05050	Methyltransf_21	0.77
PF01068	DNA_ligase_A_M	0.77
PF13365	Trypsin_2	0.77
PF13683	rve_3	0.77
PF01590	GAF	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	2.31
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.77
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.77
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.77
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.77
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.77
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.77
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.77
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.77
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
All Organisms	root	All Organisms	35.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
cellular organisms	root	All Organisms → cellular organisms	35.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.62 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.54 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.62 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.08 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.62 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.31 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.62 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.31 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.54 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.31 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.31 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.54 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.77 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.62 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.31 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.31 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.54 %
Mesorhizobium prunaredense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium prunaredense	0.77 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.62 %
Bradyrhizobium sp. 200	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	2.31 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.31 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.54 %
Mesorhizobium prunaredense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium prunaredense	0.77 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1057323	Not Available	597	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10090664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300005179\|Ga0066684_10069618	All Organisms → cellular organisms → Bacteria → Proteobacteria	2077	Open in IMG/M
3300005332\|Ga0066388_103057225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	855	Open in IMG/M
3300005332\|Ga0066388_106345047	Not Available	596	Open in IMG/M
3300005435\|Ga0070714_100671090	Not Available	999	Open in IMG/M
3300005435\|Ga0070714_101280761	Not Available	715	Open in IMG/M
3300005471\|Ga0070698_100575171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1066	Open in IMG/M
3300005713\|Ga0066905_100431122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1078	Open in IMG/M
3300005764\|Ga0066903_100359194	All Organisms → cellular organisms → Bacteria → Proteobacteria	2362	Open in IMG/M
3300005764\|Ga0066903_101402959	Not Available	1312	Open in IMG/M
3300005764\|Ga0066903_102377631	Not Available	1025	Open in IMG/M
3300005764\|Ga0066903_102631510	Not Available	975	Open in IMG/M
3300005764\|Ga0066903_103483023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	848	Open in IMG/M
3300005764\|Ga0066903_105446646	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300005764\|Ga0066903_105770656	Not Available	650	Open in IMG/M
3300005764\|Ga0066903_106611295	Not Available	603	Open in IMG/M
3300005764\|Ga0066903_107748364	Not Available	552	Open in IMG/M
3300006034\|Ga0066656_10990630	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300006175\|Ga0070712_100344872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1217	Open in IMG/M
3300006175\|Ga0070712_100563008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	961	Open in IMG/M
3300006845\|Ga0075421_100270889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2075	Open in IMG/M
3300006854\|Ga0075425_102847302	Not Available	531	Open in IMG/M
3300006914\|Ga0075436_100784640	Not Available	709	Open in IMG/M
3300009143\|Ga0099792_10878948	Not Available	592	Open in IMG/M
3300009147\|Ga0114129_10647313	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300010046\|Ga0126384_10667677	Not Available	917	Open in IMG/M
3300010047\|Ga0126382_11310790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	655	Open in IMG/M
3300010322\|Ga0134084_10173651	Not Available	739	Open in IMG/M
3300010358\|Ga0126370_11282474	Not Available	686	Open in IMG/M
3300010359\|Ga0126376_10599951	Not Available	1041	Open in IMG/M
3300010359\|Ga0126376_13253157	Not Available	502	Open in IMG/M
3300010360\|Ga0126372_10102365	All Organisms → cellular organisms → Bacteria	2158	Open in IMG/M
3300010360\|Ga0126372_10159163	Not Available	1818	Open in IMG/M
3300010361\|Ga0126378_10791588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium prunaredense	1058	Open in IMG/M
3300010361\|Ga0126378_12264973	Not Available	620	Open in IMG/M
3300010366\|Ga0126379_10061317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3156	Open in IMG/M
3300010366\|Ga0126379_10976224	Not Available	951	Open in IMG/M
3300010366\|Ga0126379_11526466	Not Available	773	Open in IMG/M
3300010366\|Ga0126379_13035767	Not Available	562	Open in IMG/M
3300010376\|Ga0126381_100113869	Not Available	3484	Open in IMG/M
3300010376\|Ga0126381_101973814	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300010376\|Ga0126381_102331286	Not Available	769	Open in IMG/M
3300010398\|Ga0126383_10492627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1283	Open in IMG/M
3300010398\|Ga0126383_11325787	Not Available	810	Open in IMG/M
3300010398\|Ga0126383_13459555	Not Available	516	Open in IMG/M
3300010868\|Ga0124844_1289861	Not Available	559	Open in IMG/M
3300012096\|Ga0137389_11593742	Not Available	549	Open in IMG/M
3300012199\|Ga0137383_10760579	Not Available	707	Open in IMG/M
3300012202\|Ga0137363_10564287	Not Available	959	Open in IMG/M
3300012490\|Ga0157322_1039356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	537	Open in IMG/M
3300012948\|Ga0126375_11084297	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	658	Open in IMG/M
3300012948\|Ga0126375_12060380	Not Available	506	Open in IMG/M
3300012961\|Ga0164302_10646933	Not Available	774	Open in IMG/M
3300012961\|Ga0164302_11580150	Not Available	544	Open in IMG/M
3300012985\|Ga0164308_11258238	Not Available	670	Open in IMG/M
3300015372\|Ga0132256_101557988	Not Available	771	Open in IMG/M
3300016341\|Ga0182035_10186096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1630	Open in IMG/M
3300016357\|Ga0182032_10411956	Not Available	1095	Open in IMG/M
3300016371\|Ga0182034_10350311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	1199	Open in IMG/M
3300016371\|Ga0182034_11602584	Not Available	572	Open in IMG/M
3300016387\|Ga0182040_10061389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2393	Open in IMG/M
3300016387\|Ga0182040_10617123	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300016422\|Ga0182039_11178855	Not Available	691	Open in IMG/M
3300016445\|Ga0182038_10029356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	3439	Open in IMG/M
3300016445\|Ga0182038_10224756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1493	Open in IMG/M
3300016445\|Ga0182038_10596235	Not Available	953	Open in IMG/M
3300016445\|Ga0182038_11115483	Not Available	701	Open in IMG/M
3300016445\|Ga0182038_11140480	Not Available	694	Open in IMG/M
3300021560\|Ga0126371_10247074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1897	Open in IMG/M
3300021560\|Ga0126371_13367732	Not Available	540	Open in IMG/M
3300025906\|Ga0207699_10111864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1751	Open in IMG/M
3300025910\|Ga0207684_10597701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300025910\|Ga0207684_11277836	Not Available	605	Open in IMG/M
3300025915\|Ga0207693_10390796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1088	Open in IMG/M
3300025915\|Ga0207693_10710876	Not Available	778	Open in IMG/M
3300025915\|Ga0207693_10859921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300025918\|Ga0207662_11344348	Not Available	507	Open in IMG/M
3300025933\|Ga0207706_11739613	Not Available	501	Open in IMG/M
3300027874\|Ga0209465_10531546	Not Available	586	Open in IMG/M
3300028881\|Ga0307277_10276393	Not Available	743	Open in IMG/M
3300031544\|Ga0318534_10593317	Not Available	630	Open in IMG/M
3300031545\|Ga0318541_10545132	Not Available	649	Open in IMG/M
3300031546\|Ga0318538_10549603	Not Available	626	Open in IMG/M
3300031546\|Ga0318538_10668248	Not Available	564	Open in IMG/M
3300031668\|Ga0318542_10200712	Not Available	1006	Open in IMG/M
3300031682\|Ga0318560_10449897	Not Available	697	Open in IMG/M
3300031719\|Ga0306917_10258720	Not Available	1335	Open in IMG/M
3300031719\|Ga0306917_10315813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1209	Open in IMG/M
3300031744\|Ga0306918_10491094	Not Available	961	Open in IMG/M
3300031744\|Ga0306918_10930577	Not Available	676	Open in IMG/M
3300031751\|Ga0318494_10369007	Not Available	831	Open in IMG/M
3300031751\|Ga0318494_10460438	Not Available	740	Open in IMG/M
3300031765\|Ga0318554_10371243	Not Available	813	Open in IMG/M
3300031792\|Ga0318529_10077693	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300031793\|Ga0318548_10218311	Not Available	937	Open in IMG/M
3300031794\|Ga0318503_10303891	Not Available	518	Open in IMG/M
3300031796\|Ga0318576_10612101	Not Available	513	Open in IMG/M
3300031798\|Ga0318523_10416588	Not Available	667	Open in IMG/M
3300031819\|Ga0318568_10799183	Not Available	585	Open in IMG/M
3300031833\|Ga0310917_10174230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	1430	Open in IMG/M
3300031833\|Ga0310917_10528048	Not Available	802	Open in IMG/M
3300031879\|Ga0306919_10623266	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	832	Open in IMG/M
3300031879\|Ga0306919_11434851	Not Available	520	Open in IMG/M
3300031890\|Ga0306925_10121797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2791	Open in IMG/M
3300031896\|Ga0318551_10203827	Not Available	1095	Open in IMG/M
3300031910\|Ga0306923_10574426	Not Available	1268	Open in IMG/M
3300031912\|Ga0306921_11595013	Not Available	709	Open in IMG/M
3300031941\|Ga0310912_10517857	Not Available	929	Open in IMG/M
3300031942\|Ga0310916_10309727	Not Available	1338	Open in IMG/M
3300031945\|Ga0310913_10123623	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1769	Open in IMG/M
3300031945\|Ga0310913_10575090	Not Available	799	Open in IMG/M
3300031945\|Ga0310913_10884154	Not Available	628	Open in IMG/M
3300031946\|Ga0310910_10254426	Not Available	1374	Open in IMG/M
3300031946\|Ga0310910_10547283	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300031947\|Ga0310909_10350261	Not Available	1239	Open in IMG/M
3300031947\|Ga0310909_10509675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1008	Open in IMG/M
3300031947\|Ga0310909_10582768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	935	Open in IMG/M
3300031947\|Ga0310909_11005134	Not Available	681	Open in IMG/M
3300031954\|Ga0306926_12002481	Not Available	651	Open in IMG/M
3300031954\|Ga0306926_12828494	Not Available	523	Open in IMG/M
3300031959\|Ga0318530_10129334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300031981\|Ga0318531_10150686	Not Available	1042	Open in IMG/M
3300032001\|Ga0306922_10209264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2093	Open in IMG/M
3300032001\|Ga0306922_10973089	Not Available	877	Open in IMG/M
3300032035\|Ga0310911_10150357	Not Available	1309	Open in IMG/M
3300032052\|Ga0318506_10242830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300032055\|Ga0318575_10345325	Not Available	754	Open in IMG/M
3300032064\|Ga0318510_10017131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2247	Open in IMG/M
3300032261\|Ga0306920_100174502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3205	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.62%
Host-Associated	Host-Associated	5.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.62%
Plants	Host-Associated → Plants	5.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.62%
Loam	Environmental → Terrestrial → Soil → Loam	20.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.77%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10573231	3300000580	Forest Soil	MTVSSPNGIEIKLNRLIDDMRLLRLQIIAFDKRLKGIEAYLKPSEQQPE
AF_2010_repII_A001DRAFT_100906642	3300000793	Forest Soil	MTVGSPNVIEIELDRLIDDMRLLRLQMIAFDRQLKG
Ga0066684_100696181	3300005179	Soil	IEIKLDRLIDDMRLLRSQMITFDRQLKGIEASLKPSRPSEQQ*
Ga0066388_1030572251	3300005332	Tropical Forest Soil	MTVNSPNMTEIKLDRLIDDARFLRSQIIAFDRRLKGIEASLKPS
Ga0066388_1063450471	3300005332	Tropical Forest Soil	MTVSSPDVVEIKLDRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQQP
Ga0070714_1006710901	3300005435	Agricultural Soil	MTVSSPNAVEIKLDRLIDDMRLLRSQMIAFDRHLKGIEACLKPS
Ga0070714_1012807612	3300005435	Agricultural Soil	MTVSSPNTTEIKLDRLIDDMRLLRSQIIAFDMHLKGIEAYLK
Ga0070698_1005751712	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKGIEASLKPS
Ga0066905_1004311223	3300005713	Tropical Forest Soil	MTVSSPNVIEIKLDRVIDDMRLLRSQMIAFDNRLKGI
Ga0066903_1003591941	3300005764	Tropical Forest Soil	MTVGSPNVIEIKLDRLIDDMRLLRSQMIAFDRNLKGIEACLKPSEPSESRRLLARRKDGF
Ga0066903_1014029594	3300005764	Tropical Forest Soil	MTVGSPNVIEIKLDRLIDDMRLLRSQMIAFDSHLKGIEASLKP
Ga0066903_1023776311	3300005764	Tropical Forest Soil	MTVARFNAIETKLDRLIDDVRLLRSQMIAFDRQLKGIEASLKP
Ga0066903_1026315101	3300005764	Tropical Forest Soil	VTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKGIE
Ga0066903_1034830231	3300005764	Tropical Forest Soil	MTVSSPNAIEIKLNRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEPSEQQP
Ga0066903_1054466462	3300005764	Tropical Forest Soil	MSASSPNVIEIKLDRLIDDMRLLRSQVIAFDSRLKGIEASLKPSE
Ga0066903_1057706562	3300005764	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMRLK
Ga0066903_1066112953	3300005764	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQMIAFDRHLKGI
Ga0066903_1077483642	3300005764	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMRLKGI
Ga0066656_109906302	3300006034	Soil	MKATPLTLSSPNVIEVKLDRVIDDMRVLRSQMIAFDRQLKGIEA
Ga0070712_1003448725	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTVSSPNVIEIKLDRLIDDMRVLRSQMIAFDRQLKGIEA
Ga0070712_1005630081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTVSSPNVIEIKLDRLIDDMRLLRSRMIAFDRQLKGIEACLKQSEPSEQQ
Ga0075421_1002708896	3300006845	Populus Rhizosphere	MTESSPNVIEIKLDRLIDDMRFLRSQIIAFDRRLNGIEA
Ga0075425_1028473021	3300006854	Populus Rhizosphere	MKASANTVSSSNTIEIKLDRLIDDMRLLRSQIIAFDMHLKGIEAYLKAA
Ga0075436_1007846402	3300006914	Populus Rhizosphere	MTVSSPNVIEIKLDRLIDDMRLLRSQMTAYDRHLKDIEAHLKPSEP
Ga0099792_108789482	3300009143	Vadose Zone Soil	MTASSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKGIEAYLKTTEPNEQ
Ga0114129_106473131	3300009147	Populus Rhizosphere	MTVSSPNVIEIKVDRLIDDMRFLRSQMIAFDRRLN
Ga0126384_106676772	3300010046	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKGIEAYPKPS
Ga0126382_113107901	3300010047	Tropical Forest Soil	MTVSSPHVIEIKLDRLIDDMRHLRSQMIAFDRQLKGIEAYLKTREPSEQQPE
Ga0134084_101736511	3300010322	Grasslands Soil	MTASSPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKGIEARLKPSQPREQ
Ga0126370_112824742	3300010358	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDEMRLLRSQMIAFDMHLKGIEAYLKPS
Ga0126376_105999512	3300010359	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDVPLLRSHMIAFDKRLKGIEAYLKP
Ga0126376_132531571	3300010359	Tropical Forest Soil	VIEIKLDRLIDDMRLLRSQMFAFDRHLRDIEASLKPSEPSEQQPE
Ga0126372_101023654	3300010360	Tropical Forest Soil	MTVGNPNVIEIKLDRLIDDMCLLRSQMIAFDMHLKGIEASLKPSEPSEQQPES
Ga0126372_101591631	3300010360	Tropical Forest Soil	MTVSSANVIEIKLDRLIDEMRLLRSQMIAFDMHLKGIEAYL
Ga0126378_107915882	3300010361	Tropical Forest Soil	MTVSSPNGIEIKLNRLIDDMRLLRSQMIAFVKRLKALDP*
Ga0126378_122649731	3300010361	Tropical Forest Soil	MTASSPNVIEIKLDRLIDDMRLLRSQMIAFDRRPKEIQDHLKPRDPSEQ
Ga0126379_100613171	3300010366	Tropical Forest Soil	MTASSPNVIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEASLKPSEP
Ga0126379_109762242	3300010366	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDMRFLRSQMIAFDRHLKGIEASLK
Ga0126379_115264661	3300010366	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDEMRLLRSQMIAFDMHLKGIEAYLKLMV*
Ga0126379_130357672	3300010366	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMHLKGI
Ga0126381_1001138695	3300010376	Tropical Forest Soil	MTVSRPNMTDKLDRLIDEVRLLRAQMIGLDRQLRGIEAYL
Ga0126381_1019738141	3300010376	Tropical Forest Soil	MTVSSSNVIEIKLDRLIDDMRLLRSQMIAFDRHLK
Ga0126381_1023312861	3300010376	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEAS
Ga0126383_104926274	3300010398	Tropical Forest Soil	MTVSSPNVTEIKLDRLIDDMRVLRSQMVAFDRQLKGIEAYLKPSEQQ
Ga0126383_113257871	3300010398	Tropical Forest Soil	MTVSNPNVIEIKLDRLIDDMRLLRPQMIAFDRHLKGIEAYLKPSEPSEQRPGS
Ga0126383_134595551	3300010398	Tropical Forest Soil	VSSPNVIEIKLDRLIEDMRLLRSQMIAFDMRLKGIEASLK
Ga0124844_12898612	3300010868	Tropical Forest Soil	VTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDGHLKGIEASLKPSEPS
Ga0137389_115937421	3300012096	Vadose Zone Soil	MTVNSPNVIEIKLDRLIDHMRRLRSQMIACDRHLKGIEACLKPSEPSEQQAES
Ga0137383_107605792	3300012199	Vadose Zone Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKGI
Ga0137363_105642872	3300012202	Vadose Zone Soil	MTVNSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKGIEACLKPSEPSEQQP
Ga0157322_10393561	3300012490	Arabidopsis Rhizosphere	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKGIEARLKPSQPSEHGMSQFLLK*
Ga0126375_110842971	3300012948	Tropical Forest Soil	VTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIEAYL
Ga0126375_120603801	3300012948	Tropical Forest Soil	MTASSPNVIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEASLK
Ga0164302_106469332	3300012961	Soil	MAVSNPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKEIEARLKTTEKQPQSK
Ga0164302_115801502	3300012961	Soil	MTVSSPNTIEIKLDRLIDDMRLLRSQMIAFDMHLKGIEAYLKAGERSERRR
Ga0164308_112582381	3300012985	Soil	MAVSNPNVIEIKLDRLIDDMRLLRSQMIAFDRHLKEIEARLKTTEK
Ga0132256_1015579882	3300015372	Arabidopsis Rhizosphere	MTVSSPNVIEVKLDRLIDEMRHLRSQMIAFDRHLKDIEVYLKL
Ga0182035_101860961	3300016341	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIEAY
Ga0182032_104119561	3300016357	Soil	MTENPPNVIEIKLNRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQQPESKS
Ga0182034_103503111	3300016371	Soil	MTVSSPNVIEFKLDRLIDDMRLLRSQMIAFDKRLKGIEAYLK
Ga0182034_116025842	3300016371	Soil	MTVSSPNVIEMKLDRLIDDMRLLRSQMIAFDMRLKGIEASLK
Ga0182040_100613891	3300016387	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGI
Ga0182040_106171232	3300016387	Soil	MTVSSPNAIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEASLKP
Ga0182039_111788551	3300016422	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIEA
Ga0182038_100293567	3300016445	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIE
Ga0182038_102247561	3300016445	Soil	MTVSSPNVIETKLDRLIDDMRLLRSQMIAFDSRLKGIE
Ga0182038_105962352	3300016445	Soil	MTVSSPNVIEMKLDRLIDDMRLLRSQMIAFDMRLKGIEASLKPSEPSEQQPE
Ga0182038_111154831	3300016445	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMHLKG
Ga0182038_111404802	3300016445	Soil	MTVSNPNVIEIKLDRLIDDMRLLRSQMIAFDRHLRGIEAYLKPSE
Ga0126371_102470744	3300021560	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDEMRLLRSQMIAFDMHLKGIEA
Ga0126371_133677321	3300021560	Tropical Forest Soil	MTVSSPNVIEIKLDRLIDEMRLLRSQMIAFDMHLKGIEAYLKLMV
Ga0207699_101118643	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VIEVKLDRLIDDMRLLRSQMIAFDRQIKGIEACLKPS
Ga0207684_105977011	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTVGSPNVIEIKLDRLIDDMRLLRSQMIAFDRNLKGIEACLKPN
Ga0207684_112778361	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTVNSPNVIEIKLDRLIDDMRLLRSQMIAFDRYLKGIEAYVKPS
Ga0207693_103907961	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTVSSPNAVEIKLDRLIDDMRLLRSQMIAFDRHLKG
Ga0207693_107108763	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTVSSPNTTEIKLDRLIDDMRLLRSQIIAFDMHLKGIEAY
Ga0207693_108599212	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTVSSPNVIEIKLDRVIDDMRLLRSQMIAFDRQLKGIEACLKPSEPSEQQ
Ga0207662_113443481	3300025918	Switchgrass Rhizosphere	VTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRHLK
Ga0207706_117396131	3300025933	Corn Rhizosphere	MTVSSPNVIEIKLDRLIDDMRLLRSRMIAFDRQLKGIEACLKQ
Ga0209465_105315461	3300027874	Tropical Forest Soil	MTVSSPHVIEIKLDRLIDDMRLLRSQTIAFNRQLNGIEAYLKPREPSEQQ
Ga0307277_102763932	3300028881	Soil	MTASSPNVIEIKLDRLIDDMRLLRSQMIAYDRQLKGIEASLDSSEPSEQQP
Ga0318534_105933171	3300031544	Soil	MTVSSPNAIEIKLDRVIDEMRFLRSQMIAFDRHLKGIEAYLEPS
Ga0318541_105451321	3300031545	Soil	MTVSSPTLIEIKLDRLIDDMRLLRSQMIAFDKRLKQIEAYLKPNEQQP
Ga0318538_105496032	3300031546	Soil	MSTDDREQPPNVIEIKLDRLIDDIRLLRSQMIAFDKRLKGIEAY
Ga0318538_106682481	3300031546	Soil	MTVSSPNGIEIKLTRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQQPES
Ga0318542_102007121	3300031668	Soil	MTVSSPNGIEIKLTRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQQP
Ga0318560_104498973	3300031682	Soil	MTVRRPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKRIEASLK
Ga0306917_102587203	3300031719	Soil	MTVRRPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKRIEASLKPSEPSER
Ga0306917_103158134	3300031719	Soil	MTVGSPNVIEIKLDRLIDDMRLLRSQMIAFDRNLKGIEACLK
Ga0306918_104910941	3300031744	Soil	MTVSSPNVIGIKLDRVIDDMRLLRSHMIAFDNRLKGIEAYLKPSEP
Ga0306918_109305771	3300031744	Soil	VIEIKLDRLIDDMRLLRSQMIAFDSHLKGIEASLKPSEPSEQQPE
Ga0318494_103690071	3300031751	Soil	MTVSSPNAIEIKLDRVIDEMRFLRSQMIAFDRHLKGIEAYLEPSEPSEQQP
Ga0318494_104604381	3300031751	Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEASLK
Ga0318554_103712431	3300031765	Soil	MTVSSPNGIEIKLTRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSE
Ga0318529_100776933	3300031792	Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQLIAFDRHLK
Ga0318548_102183113	3300031793	Soil	MTVRRPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKRIEASLKP
Ga0318503_103038911	3300031794	Soil	MTVSSPEPMTVSSPNVIETKLDRLIDDMRLLRSQMIAFDSRLKGIE
Ga0318576_106121011	3300031796	Soil	MTVGSPNVIEIKLDRLIDDMRLLRSQMIAFDRNLK
Ga0318523_104165881	3300031798	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMHLKGIE
Ga0318568_107991831	3300031819	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIEAYL
Ga0310917_101742301	3300031833	Soil	MTVSSPNVIEFKLDRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQ
Ga0310917_105280482	3300031833	Soil	MTVSSPNVIEMKLDRLIDDMRLLRSQMIGFDMRLKGIEASLKPSEPSEQQ
Ga0306919_106232661	3300031879	Soil	MTVSSPNVIEIKLDRLIDDVRLLRSQMIAFDRQLIGIEA
Ga0306919_114348511	3300031879	Soil	MTVSSPNVIEIKLNRLIDDMRLLRSQMIAFDKRLKGI
Ga0306925_101217971	3300031890	Soil	MTVGSPNVIEIKLDRVIDDMRLLRSQMIAFERNLKGIEACL
Ga0318551_102038272	3300031896	Soil	MTVSSPNVIEIKLDRLTDDVRFLRSQMIAFDRHLK
Ga0306923_105744261	3300031910	Soil	MTVSSPNVIGIKLDRVIDDMRLLRSQMIAFDNRLKGIEAYLKPSEPSEQQS
Ga0306921_115950132	3300031912	Soil	MTVSSPNLIEIKLDRLIDDMRLLRSQMIAFDKRLKQIEAYLKPNEQQPE
Ga0310912_105178571	3300031941	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDGRLKGIE
Ga0310916_103097273	3300031942	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDGRLKGIEASLKP
Ga0310913_101236231	3300031945	Soil	MTVSSPNVIEIKLNRLIDDMRLLRSQMIAFDKRLKGIEAY
Ga0310913_105750902	3300031945	Soil	MTVSSPNVIEIKLDRVIDDMRLLRSQMIAFERNLKGI
Ga0310913_108841542	3300031945	Soil	VIEIKLDRLIDDMRLLRSQMIAFDSHLKGIEASLKPSEPS
Ga0310910_102544264	3300031946	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIEAYLKPS
Ga0310910_105472832	3300031946	Soil	MTVSSPNAIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEASLKPN
Ga0310909_103502612	3300031947	Soil	MTVSSPNAIEIKLDRLIDDVRFLRSQMIAFDRHLKGIEA
Ga0310909_105096751	3300031947	Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQLIAFDRHLKGIEASLK
Ga0310909_105827681	3300031947	Soil	MTVSSPNVIEIKLDRLIDDVRLLRSQMIAFDRQLIGIEAYRKPSERQP
Ga0310909_110051341	3300031947	Soil	MTVSSPNVIEIKLDRVIDDMRLLRSQMIAFDMHLKGIEASLKASEPS
Ga0306926_120024812	3300031954	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKGI
Ga0306926_128284941	3300031954	Soil	MSASSPNVIEIKLDRLIDDMRLLRSQVIAFDGRLK
Ga0318530_101293344	3300031959	Soil	VTVSSPSVIEIKLDRLIDDMRLLRSQMIAFDKQLKGIEASLK
Ga0318531_101506862	3300031981	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDGRLKGIEASLKPSKPNQQQ
Ga0306922_102092643	3300032001	Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQLIAFDRHLKGIE
Ga0306922_109730892	3300032001	Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQMIAFDRQLKGIEASLKPGEPSEQQ
Ga0310911_101503573	3300032035	Soil	MTVRRPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKRIEASLKPSEPSERQP
Ga0318506_102428301	3300032052	Soil	MTVSSPNVIEIKLDRLIDDVRFLRSQMIALDRHLK
Ga0318575_103453252	3300032055	Soil	MTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDMRLKGIEASLK
Ga0318510_100171312	3300032064	Soil	MTVSSPNGIEIKLTRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQQ
Ga0306920_1001745025	3300032261	Soil	MTENPPNVIEIKLNRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F062964

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences