Metagenome Family F062937

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062937
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	93 residues
Representative Sequence	MLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQALVWGPPTRLVAQGLT
Number of Associated Samples	102
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.77 %
% of genes near scaffold ends (potentially truncated)	32.31 %
% of genes from short scaffolds (< 2000 bps)	78.46 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.923 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (27.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.66% β-sheet: 0.00% Coil/Unstructured: 70.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF04392	ABC_sub_bind	20.77
PF00487	FA_desaturase	10.77
PF01068	DNA_ligase_A_M	2.31
PF00196	GerE	1.54
PF00753	Lactamase_B	1.54
PF02518	HATPase_c	1.54
PF01381	HTH_3	0.77
PF13365	Trypsin_2	0.77
PF00076	RRM_1	0.77
PF04909	Amidohydro_2	0.77
PF01944	SpoIIM	0.77
PF02016	Peptidase_S66	0.77
PF01750	HycI	0.77
PF00699	Urease_beta	0.77
PF13683	rve_3	0.77
PF02738	MoCoBD_1	0.77
PF14026	DUF4242	0.77
PF01568	Molydop_binding	0.77
PF02416	TatA_B_E	0.77
PF10503	Esterase_PHB	0.77
PF06348	DUF1059	0.77
PF12779	WXXGXW	0.77
PF07045	DUF1330	0.77
PF13701	DDE_Tnp_1_4	0.77
PF00011	HSP20	0.77
PF00535	Glycos_transf_2	0.77
PF00118	Cpn60_TCP1	0.77
PF01243	Putative_PNPOx	0.77
PF07681	DoxX	0.77
PF03168	LEA_2	0.77
PF00775	Dioxygenase_C	0.77
PF00106	adh_short	0.77
PF00072	Response_reg	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	20.77
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	10.77
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	10.77
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.31
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.31
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.77
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.77
COG0680	Ni,Fe-hydrogenase maturation factor	Energy production and conversion [C]	0.77
COG0832	Urease beta subunit	Amino acid transport and metabolism [E]	0.77
COG1300	Stage II sporulation protein SpoIIM, component of the engulfment complex	Cell cycle control, cell division, chromosome partitioning [D]	0.77
COG1619	Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling)	Cell wall/membrane/envelope biogenesis [M]	0.77
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.77
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.77
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.77
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.77
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.92 %
Unclassified	root	N/A	33.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.92 %
Unclassified	root	N/A	33.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.92 %
Unclassified	root	N/A	33.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	19.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.62 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.77 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.77 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	19.23 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.31 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.54 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.54 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	19.23 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.31 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.54 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.77 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	17.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.31 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.77 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.77 %
Pseudoalteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae	0.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.77 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	17.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.31 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Pseudoalteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	0.77 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.77 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	17.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.31 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Pseudoalteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	0.77 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.77 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	17.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.31 %
Catenulispora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Pseudoalteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	0.77 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.77 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2208299	Not Available	554	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101927670	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101927847	All Organisms → cellular organisms → Bacteria	2240	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101928180	All Organisms → cellular organisms → Bacteria → Proteobacteria	1615	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101928302	Not Available	1283	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101929779	Not Available	1068	Open in IMG/M
3300000559\|F14TC_100330021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2873	Open in IMG/M
3300000559\|F14TC_101101132	Not Available	868	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1013781	Not Available	622	Open in IMG/M
3300000891\|JGI10214J12806_11867859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	785	Open in IMG/M
3300000955\|JGI1027J12803_104289986	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300000956\|JGI10216J12902_104722188	Not Available	505	Open in IMG/M
3300000956\|JGI10216J12902_111169181	Not Available	647	Open in IMG/M
3300001431\|F14TB_101653043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	656	Open in IMG/M
3300001661\|JGI12053J15887_10443250	Not Available	622	Open in IMG/M
3300002886\|JGI25612J43240_1055782	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300002914\|JGI25617J43924_10069894	Not Available	1283	Open in IMG/M
3300005434\|Ga0070709_10034554	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3066	Open in IMG/M
3300005436\|Ga0070713_100137145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2163	Open in IMG/M
3300005439\|Ga0070711_100867511	Not Available	769	Open in IMG/M
3300005440\|Ga0070705_100282594	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300005440\|Ga0070705_100606160	Not Available	848	Open in IMG/M
3300005445\|Ga0070708_100036424	All Organisms → cellular organisms → Bacteria → Proteobacteria	4291	Open in IMG/M
3300005445\|Ga0070708_100050549	Not Available	3682	Open in IMG/M
3300005445\|Ga0070708_101408437	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
3300005468\|Ga0070707_100242906	Not Available	1752	Open in IMG/M
3300005471\|Ga0070698_100095860	All Organisms → cellular organisms → Bacteria → Proteobacteria	2944	Open in IMG/M
3300005471\|Ga0070698_100122634	All Organisms → cellular organisms → Bacteria	2557	Open in IMG/M
3300005545\|Ga0070695_100506052	Not Available	935	Open in IMG/M
3300005546\|Ga0070696_100225830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1407	Open in IMG/M
3300005546\|Ga0070696_101184484	Not Available	645	Open in IMG/M
3300005557\|Ga0066704_10108803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1828	Open in IMG/M
3300005586\|Ga0066691_10228959	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1088	Open in IMG/M
3300005713\|Ga0066905_100268883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1321	Open in IMG/M
3300005921\|Ga0070766_11067562	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300006041\|Ga0075023_100013179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2180	Open in IMG/M
3300006047\|Ga0075024_100082484	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300006050\|Ga0075028_100417428	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300006176\|Ga0070765_100160017	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300006755\|Ga0079222_10118114	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300006844\|Ga0075428_101373757	Not Available	742	Open in IMG/M
3300006852\|Ga0075433_10001084	All Organisms → cellular organisms → Bacteria → Proteobacteria	19620	Open in IMG/M
3300006852\|Ga0075433_10356065	Not Available	1293	Open in IMG/M
3300006854\|Ga0075425_100442113	All Organisms → cellular organisms → Bacteria	1497	Open in IMG/M
3300006854\|Ga0075425_100878561	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1025	Open in IMG/M
3300006904\|Ga0075424_101578735	Not Available	696	Open in IMG/M
3300006954\|Ga0079219_10084347	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300007255\|Ga0099791_10107441	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1288	Open in IMG/M
3300007255\|Ga0099791_10206406	Not Available	927	Open in IMG/M
3300007788\|Ga0099795_10484071	Not Available	575	Open in IMG/M
3300009038\|Ga0099829_10436434	Not Available	1084	Open in IMG/M
3300009143\|Ga0099792_10140906	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1318	Open in IMG/M
3300009147\|Ga0114129_10962707	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300009162\|Ga0075423_11263957	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300009808\|Ga0105071_1034892	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300010362\|Ga0126377_10661544	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300010362\|Ga0126377_12808873	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300010399\|Ga0134127_10233909	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300010400\|Ga0134122_10216755	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M
3300010400\|Ga0134122_10737060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	931	Open in IMG/M
3300010400\|Ga0134122_11082322	Not Available	793	Open in IMG/M
3300011270\|Ga0137391_10359104	Not Available	1250	Open in IMG/M
3300011270\|Ga0137391_11534029	Not Available	511	Open in IMG/M
3300011271\|Ga0137393_10665276	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	892	Open in IMG/M
3300012202\|Ga0137363_11087235	Not Available	680	Open in IMG/M
3300012351\|Ga0137386_10901998	Not Available	633	Open in IMG/M
3300012685\|Ga0137397_10117392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1959	Open in IMG/M
3300012918\|Ga0137396_10542131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	862	Open in IMG/M
3300012922\|Ga0137394_10531528	Not Available	998	Open in IMG/M
3300012925\|Ga0137419_11547201	Not Available	563	Open in IMG/M
3300012927\|Ga0137416_10323996	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1284	Open in IMG/M
3300012930\|Ga0137407_10096489	All Organisms → cellular organisms → Bacteria	2524	Open in IMG/M
3300012931\|Ga0153915_10075612	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300012944\|Ga0137410_10181622	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300015241\|Ga0137418_10349456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1221	Open in IMG/M
3300015371\|Ga0132258_10002427	All Organisms → cellular organisms → Bacteria → Proteobacteria	34299	Open in IMG/M
3300015372\|Ga0132256_101126573	Not Available	899	Open in IMG/M
3300017997\|Ga0184610_1217692	Not Available	638	Open in IMG/M
3300018028\|Ga0184608_10475147	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300018032\|Ga0187788_10241043	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300018052\|Ga0184638_1005479	All Organisms → cellular organisms → Bacteria → Proteobacteria	4114	Open in IMG/M
3300018052\|Ga0184638_1049219	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300018056\|Ga0184623_10292373	Not Available	738	Open in IMG/M
3300018075\|Ga0184632_10025510	All Organisms → cellular organisms → Bacteria	2514	Open in IMG/M
3300018076\|Ga0184609_10049781	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300018077\|Ga0184633_10536051	Not Available	562	Open in IMG/M
3300018078\|Ga0184612_10094601	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300018079\|Ga0184627_10156649	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300018084\|Ga0184629_10027010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2447	Open in IMG/M
3300018422\|Ga0190265_10010864	All Organisms → cellular organisms → Bacteria	6839	Open in IMG/M
3300018429\|Ga0190272_10134281	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300018429\|Ga0190272_11045498	Not Available	785	Open in IMG/M
3300019877\|Ga0193722_1116022	Not Available	623	Open in IMG/M
3300020003\|Ga0193739_1003212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4453	Open in IMG/M
3300020012\|Ga0193732_1066143	Not Available	602	Open in IMG/M
3300020170\|Ga0179594_10128914	Not Available	926	Open in IMG/M
3300020581\|Ga0210399_10076415	All Organisms → cellular organisms → Bacteria → Proteobacteria	2716	Open in IMG/M
3300021073\|Ga0210378_10192810	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300022534\|Ga0224452_1003874	All Organisms → cellular organisms → Bacteria → Proteobacteria	3580	Open in IMG/M
3300022694\|Ga0222623_10149010	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300025885\|Ga0207653_10190183	Not Available	771	Open in IMG/M
3300025910\|Ga0207684_10015512	All Organisms → cellular organisms → Bacteria	6554	Open in IMG/M
3300025910\|Ga0207684_10045419	All Organisms → cellular organisms → Bacteria → Proteobacteria	3726	Open in IMG/M
3300025910\|Ga0207684_10116522	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2289	Open in IMG/M
3300025910\|Ga0207684_10141076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2071	Open in IMG/M
3300025917\|Ga0207660_10126490	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1941	Open in IMG/M
3300025922\|Ga0207646_10519823	Not Available	1071	Open in IMG/M
3300026285\|Ga0209438_1035174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1661	Open in IMG/M
3300026360\|Ga0257173_1053893	Not Available	574	Open in IMG/M
3300026482\|Ga0257172_1017432	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	1243	Open in IMG/M
3300026496\|Ga0257157_1007925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1661	Open in IMG/M
3300026507\|Ga0257165_1002073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2536	Open in IMG/M
3300027775\|Ga0209177_10397478	Not Available	551	Open in IMG/M
3300027787\|Ga0209074_10088799	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300027894\|Ga0209068_10064527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1881	Open in IMG/M
3300028047\|Ga0209526_10011411	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6134	Open in IMG/M
3300028047\|Ga0209526_10728934	Not Available	621	Open in IMG/M
3300028536\|Ga0137415_10268648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1512	Open in IMG/M
3300028792\|Ga0307504_10084666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	980	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10036070	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300031720\|Ga0307469_10342343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1251	Open in IMG/M
3300031720\|Ga0307469_10473749	Not Available	1090	Open in IMG/M
3300031740\|Ga0307468_100348976	Not Available	1102	Open in IMG/M
3300031740\|Ga0307468_101284141	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031820\|Ga0307473_10016085	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2906	Open in IMG/M
3300031820\|Ga0307473_10119474	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300031962\|Ga0307479_10315613	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1545	Open in IMG/M
3300032174\|Ga0307470_10596138	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	825	Open in IMG/M
3300032180\|Ga0307471_100904527	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300032180\|Ga0307471_101665724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	792	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.31%
Host-Associated	Host-Associated	7.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.69%
Aquatic	Environmental → Aquatic	14.62%
Plants	Host-Associated → Plants	7.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.69%
Sediment	Environmental → Aquatic → Sediment	13.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.92%
Freshwater	Environmental → Aquatic → Freshwater	1.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.54%
Loam	Environmental → Terrestrial → Soil → Loam	23.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.15%
Sand	Environmental → Terrestrial → Soil → Sand	1.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.08%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.08%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.23%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.08%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.54%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.77%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.77%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22082991	3300000033	Soil	EARVRAVLWNSPTGTIQTYCLEHLASAAKIPSGHLPDLAAFVRSLHERGDCQRRFGGFCHADQHETRQILVWGPPTRLIAQGLA*
INPhiseqgaiiFebDRAFT_1019276702	3300000364	Soil	MLSRAQEARVRAVLWNSPTGTIQTYCLEHLAXAAXXPSGXLPDLAAFVRXLXERGDCQRRFGGFCNADQHETRQILVWGPPTRLVAQGRAG*
INPhiseqgaiiFebDRAFT_1019278473	3300000364	Soil	MLSRAQEARVRAILWNSPAGTIQTYCLEHLASAAKIPSGHLPDLAAFVRXLXERGDCQRRFGGFCXADQHETRQILVWGPPTRLVAQGRAG*
INPhiseqgaiiFebDRAFT_1019281802	3300000364	Soil	MLSRAQEARVRALLWNSPTGTIRSYCLEHLAXAATIPSGHLPDLAAXVRSLHEXGDCXRRFGGFCNADQHETRQILVWGPPTRLIAQGLA*
INPhiseqgaiiFebDRAFT_1019283021	3300000364	Soil	ILRGMLSRAQEARIRAILWRSPTANTQTYCLEHLASAATIPSGHLPDLAVFVRGLHERGDCQRRFGGFCNVGEHETRRILVWGPPTRMVAQVRAG*
INPhiseqgaiiFebDRAFT_1019297792	3300000364	Soil	MFGYDTPRHALSRSEARVRAILWSSPTGTIQTYCLEHLASAATILSGHLPDLAVFVRGLHERGDCQRRFGGFCNVGEHETRRILVWGPPTRMVAQVRAG*
F14TC_1003300218	3300000559	Soil	MLSRAQEARIRAIVWSSPMGTIRTYCLEHLASAATIPSGHMPDLAAFVRSLHERGDCQRRFGGFCNAGEHETRQILLWGPPTRTVAPVGAG*
F14TC_1011011323	3300000559	Soil	MLSRAQEARVRAILWNSPAGTIQTYGLEHLATAATIPSGHLPDLVVFVRTLHERGDCQRRFGGFCDVDRHETKQTLVWGPPTRLAART*
KanNP_Total_F14TBDRAFT_10137812	3300000709	Soil	MLSRAQEARIRAIVWSSPMGTIRTYCLEHLASAATIPSGHLPDLAAFLRSLHERGDCQRRFGGFCNAGEHETRQILLWGPPTRTVAPVGAG*
JGI10214J12806_118678591	3300000891	Soil	MLSRAQEARVRETLWRGSAATVQTYCLEHLATAAKIPPGHMSDLAVFVRGLHERGDCQRRFGGFCDADRHETKQILVSGPPSRRG
JGI1027J12803_1042899861	3300000955	Soil	MLSRAQEARVRALLWNSPTGTIRSYCLEHLAHAATIPSGHLPDLAAFVRSLHERGDCQRRFGGFCHADQHETRQILVWGPPT
JGI10216J12902_1047221881	3300000956	Soil	MLSRAQEARVRAILWSSPAGTSQSYCLVHLATAAKIPAGHLPDLAAFVRSLRERGDCQRRFGGFCDADKHETKQI
JGI10216J12902_1111691812	3300000956	Soil	MLSRAQEARVRAILWNSPTGTVQTYCLEHLATTAKIPSGHLPDLAAFVRTLHERGDCQRRFGGFCHADQHETRQILVWGPPTRLVAQGRAG*
F14TB_1016530431	3300001431	Soil	RAILWNSPAGTIQTYGLEHLATAATIPSGHLPDLVVFVRTLHERGDCQRRFGGFCDVDRHETKQTLVWGPPTRLAART*
JGI12053J15887_104432501	3300001661	Forest Soil	MLSRAQEARVHAILWSSQPGTIHTYCLEHLATAAEIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADQHETKQTLVC
JGI25612J43240_10557821	3300002886	Grasslands Soil	MEWHGFGLLAQPCAFGYDSRAVLSRAQEGRVRGILWSSPTGVTQTYCLEHLATAAKIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPIRLVAQG*
JGI25617J43924_100698942	3300002914	Grasslands Soil	MLSRAQEARIRALIWGSSPGTLLTYCLEHLANSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0070709_100345541	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRTT*
Ga0070713_1001371453	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRTT*
Ga0070711_1008675111	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSLRLRAGRTT*
Ga0070705_1002825943	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEWHGFGLLAQPCAFGYDSHAVLSRAQEGRVRGILWSSPTGVIQTYCLEHLATAAKIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVAQGQT*
Ga0070705_1006061602	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0070708_1000364243	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEWHGFGLLAQPCAFGYDSRAVLSRAQEGRVRGILWSSPTGVIQTYCLEHLATAAKIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVAQGQT*
Ga0070708_1000505495	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LLFGYDSLAMLSRAQEARVRALLWSGPAGTVQTYCLEHLATAARILPGHLSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTVVWGPPAQLVAQGLR*
Ga0070708_1014084371	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAARTT*
Ga0070707_1002429061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHET
Ga0070698_1000958604	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MEWHGFGLLAQPCAFGYDSRAVLSRAQEGRVRGILWSSPTGVIQTYCLEHLATAANIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVAQGQT*
Ga0070698_1001226343	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLFRAQEARVRAILGSSPAGTVQTYCLEHLATAAKIPPRHMSDLAVFVRTLHERGDCQRRFGGFCDADRHETRQTLVWGPPVRLDVAGP*
Ga0070695_1005060521	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVSGPSPRLRAEGT*
Ga0070696_1002258301	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGI*
Ga0070696_1011844841	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRRAEGT*
Ga0066704_101088033	3300005557	Soil	VFGYDSPRMLSRAQEARIRALIWGSSPGTLLTYCLEHLANSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0066691_102289591	3300005586	Soil	IWGSSPGTLLTYCLEHLANSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0066905_1002688832	3300005713	Tropical Forest Soil	MLSRVQEARVRAIVWSSPTGTIHTYCLEHLASAATIAFGHLPDLAAFVRSLHERGDCQRRFGGFCNAGTHETRQILVWGPPAREVAPVRAG*
Ga0070766_110675622	3300005921	Soil	VLSRSQETRVRSILWGSSSRTHCLEHLATAAKIPSGHLSDLAAFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVARGRT*
Ga0075023_1000131794	3300006041	Watersheds	MLSRAQEARIRALIWSSSPGLLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0075024_1000824841	3300006047	Watersheds	GYDSPAMLSRAQEARVRAILWNSPPGTIQTYCLEHLATAAKIPPGHMSDLAVFVRTLHERGDCQRRFGGFCDADRHETRQTLVWGPPTRLAAPGLT*
Ga0075028_1004174281	3300006050	Watersheds	MLSRAQEARVRAILWSSPLETVQTYCLEHLATAAKIPPGHMSDLAVFVRGLHERGDCQRRFGGFCGADQHVTRQTLVWGPPARLGAQGL
Ga0070765_1001600172	3300006176	Soil	VLSRSQETRVRSILWGSSSRTHCLEHLATAAKIPSGHLSDLAAFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVEQGRT*
Ga0079222_101181142	3300006755	Agricultural Soil	MLSRAQEARVRAILWSSPPGAIQTYCLEHLATAAKISSGHLSDLAIFARTLHERGDCQRRFGGFCDADRHETRQTLVWGPPTRRAAQGRT*
Ga0075428_1013737572	3300006844	Populus Rhizosphere	MLSRAQEARVRAILWNSPAGTIQTYCLEHLASAAKIPSGHLPDLAAFVRSLHERGDCQRRFGGFCNADQHETRQILVWGPPTRLVAQGLA*
Ga0075433_100010846	3300006852	Populus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRAT*
Ga0075433_103560652	3300006852	Populus Rhizosphere	MLSRAQEARVRAILWNSPAGTIQTYCLEHLASAAKIPSGHLPDLAAFVRSLHERGDCQRRFGGFCNADQHETRQILVWGPPTRLVAHGRAG*
Ga0075425_1004421131	3300006854	Populus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGR
Ga0075425_1008785611	3300006854	Populus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRST*
Ga0075424_1015787352	3300006904	Populus Rhizosphere	MLSRAQEARVRAILWNSPAGTIQTYCLEHLASAAKIPSGHLPDLAAFVRSLHERGDCQRRFGGFCNADQHETRQILVWGPPTRLVAQGRAG*
Ga0079219_100843471	3300006954	Agricultural Soil	QGKARRGVAWLGLAGKARRGSPTPARSATIARAMLSRAQEARVRAILWSSPPGAIQTYCLEHLATAAKISSGHLSDLAIFARTLHERGDCQRRFGGFCDADRHETRQTLVWGPPTRRAAQGRT*
Ga0099791_101074413	3300007255	Vadose Zone Soil	LIWGSSPGTLLTYCLEHLANSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0099791_102064062	3300007255	Vadose Zone Soil	LLFGYDKLAMLSRTQEARVRALLWSGPARTVQSYCLEHLATAARILPGHLADLAVFVRNLHERGDCQRRFGGFCDADRHETKQTVVWGPPTQLVAQGLK*
Ga0099795_104840711	3300007788	Vadose Zone Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPSSHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPR
Ga0099829_104364342	3300009038	Vadose Zone Soil	MAVSTWVPFGYDSPAMLSRAQEARVQAILWSSPPRTIQTYCLEHLATASKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVAQGLT*
Ga0099792_101409063	3300009143	Vadose Zone Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPSSHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0114129_109627072	3300009147	Populus Rhizosphere	MLSRAQEARVRAVLWNSPTGTIQTYCLEHLASAAKIPSGHLPDLAAFVRSLHERGDCQRRFGGFCNADQHETRQILVWGPPTRLIAQGLA*
Ga0075423_112639571	3300009162	Populus Rhizosphere	MLSRAQEARVRAVLWNSPTGTIQTYCLEHLAHAATIPSGHLPDLAAFVRSLHERGDCQRRFGGFCNADQHETRQILVWGPPTRLVAQGRA
Ga0105071_10348922	3300009808	Groundwater Sand	MLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQALVWGPPTRLVAQGLT*
Ga0126377_106615442	3300010362	Tropical Forest Soil	LSRAQEARVRAILWNSSAGTIHTYCLEHLATAAKIPAGHLPDLAAFVRSLHERGDCQRRFGGFCDADKHETRQILVWGPPTRLVAQGRAG*
Ga0126377_128088731	3300010362	Tropical Forest Soil	TMLSRAQEARIRAILWNSPAGTVQTYCLEHLATTAKIPSGHLPDLAAFVRTLHERGDCQRRFGGFCDADKHETRQILVWGPPTRLVAQVRAG*
Ga0134127_102339093	3300010399	Terrestrial Soil	MLSRAQEARVRETLWRGSAATVQTYCLEHLATAAKIPPGHMSDLAVFVRGLHERGDCQRRFGGFCDADRHETKQILVSGPPSRRGTQSAT*
Ga0134122_102167552	3300010400	Terrestrial Soil	MLSRAQEARVRGILWSGASGSYCLEHLATAAKIPSGHMSDLAVFVRSLHERGDCQRRFGGFCDADRHETKQILVSGPPTRPVAQRLT*
Ga0134122_107370602	3300010400	Terrestrial Soil	MLSRAQEARVRETLWRGSAATVQTYCLEHLATAAKIPPGHMSDLAVFVRGLHERGDCQRRFGGFCDADRHETKQILVSGPPSRRGAQSAT*
Ga0134122_110823222	3300010400	Terrestrial Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHDTRQTLVWGPSPRLRAEGT*
Ga0137391_103591042	3300011270	Vadose Zone Soil	VPTTRAQEARVRAILWSSPAGTIRTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVAQGLT*
Ga0137391_115340292	3300011270	Vadose Zone Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVW
Ga0137393_106652762	3300011271	Vadose Zone Soil	MAVSTWVPFGYDSPAMLSRAQEARVQAILWSSPPRTIQTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVAQGLT*
Ga0137363_110872351	3300012202	Vadose Zone Soil	LLFGYDKLAMLSRTQEARVRALLWSGPAGTVQTYCLEHLATAARILPGHLSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTIVWGPPTQLVAQGRR*
Ga0137386_109019981	3300012351	Vadose Zone Soil	MLSRAQEARIRALIWGSSPGTLLTYCLEHLANSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWG
Ga0137397_101173922	3300012685	Vadose Zone Soil	MLSRAQEARVHAILWSSQPGTIHTYCLEHLATAAEIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADQHETKQTLVCGPLSRRVAQGLT*
Ga0137396_105421312	3300012918	Vadose Zone Soil	CPFGCRTYVETSERSGLLAHVVLVGYDGPAMLSRAQEARVQAILWSSSAGTIHTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGVCDADRHETKQTLVWGPPTRLVAQGLT
Ga0137394_105315281	3300012922	Vadose Zone Soil	LLFGYDSLAMLSRAQEARVRALLWSGPAGTVQTYCLEHLATAARILPGHLSDLAVFVRTLHEKGDCQRRFGGFCDADRHETKQTVVWGPPTQLVAQGLK*
Ga0137419_115472012	3300012925	Vadose Zone Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT*
Ga0137416_103239961	3300012927	Vadose Zone Soil	VVLVGYDGPAMLSRAQEARVQAILWSSSAGTIHTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGVCDADRHETKQTLVWGPPTRLVAQGLT*
Ga0137407_100964894	3300012930	Vadose Zone Soil	MLSRAQEARVHAILWSSQPGTIDTYCLEHLATAAEIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADPHETKQTLVCGPPSRRVAQGLT*
Ga0153915_100756121	3300012931	Freshwater Wetlands	AMLSRAQEARVRAILWSSAAGTVQSYCLEHLATAAKIAPGHLSDLAIFVRALHERGDCQRRFGGFCDADQHVTKQTLVWGPPARLMANGPSGP*
Ga0137410_101816221	3300012944	Vadose Zone Soil	ALLFGYDKLAMLSRTQEARVRALLWSGPAGTVQTYCLEHLATAARILPGHLSDLTVFVRTLHEKGDCQRRFGGFCDADRHETKQTVVWGPPTQLVAQGLK*
Ga0137418_103494561	3300015241	Vadose Zone Soil	MLSRAQEARVQAILWSGPPGTIQTYCLEHLATAAKIPPGHMSDLVVFVRTLHERGDCQRRFGGFCDADRHETKQTL
Ga0132258_1000242724	3300015371	Arabidopsis Rhizosphere	MARAMLSRAQEARVREILWNSPTGTVQTYCLEHLARAATIPPGHLPDLAAFVRGLHERGDCQRRFGGFCNADKHETRQILVWGPPTRLVAQAQAG*
Ga0132256_1011265732	3300015372	Arabidopsis Rhizosphere	MARAMLSRAQEARVREILWNSPTGTVQTYCLEHLARAATIPPGHLPDLAAFVRGLHERGDCQRRFGGFCNADKHETRQILVWGP
Ga0184610_12176921	3300017997	Groundwater Sediment	VWLLAHRLPFGYDSAAMLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIQPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVARGLT
Ga0184608_104751471	3300018028	Groundwater Sediment	GPLAHVVLVGYDGPVMLSRAQEIRVREILWSGPAGPVQTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0187788_102410431	3300018032	Tropical Peatland	GVDSTRWPIPVRSATIARAVLSRSQEARVRAILRNNSSRTYCLEHLVTTAKIPRAHLSDLAAFVRTLHERGDCQRRFGGFCDVHEHETKQTLVWGSPPRRVARGQT
Ga0184638_10054796	3300018052	Groundwater Sediment	MLSRAQEARVRAILWSGPPGTIRTYCFEHLAIAAKIPPGHMSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVGRPPTRPVAQGLT
Ga0184638_10492192	3300018052	Groundwater Sediment	MLSRAQEARVRAILWSSPAGTVETYCLEHLATAARIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0184623_102923731	3300018056	Groundwater Sediment	DLNGFRSTIAWLGYPLWLLAHRLPFGYDSAAMLSRAQEARVRAILWSSPAGTVQTYCLEHLATAARIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGL
Ga0184632_100255104	3300018075	Groundwater Sediment	VWLLAHRLPFGYDSAAMLSRAQEARVRAILWSSPAGTVQTYCLEHLATAARIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0184609_100497813	3300018076	Groundwater Sediment	VWLLAHRLPFGYDSAAMLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0184633_105360511	3300018077	Groundwater Sediment	WLLAHPLPFGYDSRAMLSRAQEARVRAILWSSPARTVQTYCLEHLATAAKIPAGHAADLAAFVRTLREHGDCQTRSGGVCDAEAHETKQLLAWGPTTNLVAQG
Ga0184612_100946013	3300018078	Groundwater Sediment	MLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0184627_101566491	3300018079	Groundwater Sediment	VPRKPGVRGILWSGPPGIIRTYCLEDLAIAAKIPPGHMSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVAQGLT
Ga0184629_100270102	3300018084	Groundwater Sediment	MAVSTWVPFGYDSPAMLSRAQEARVQAILWSSPPRTIQTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVAQGLT
Ga0190265_1001086410	3300018422	Soil	MVLVGYDGHAMLSRAQEARVQAILWSSSAGTIHTYCLEHLATAAKIPPPGTCQISRSSSEPCMSGANCQRRSGGFCDAGRHETKQTLVWGPPTRLVAHGLT
Ga0190272_101342813	3300018429	Soil	MLSRAQEARVQAILWSSPPGTLQTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPSRPVAQGQT
Ga0190272_110454982	3300018429	Soil	MLSRAQEARIQAILWSSPPGTIQTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHTTRQTLVWGPPGRLMAPGLT
Ga0193722_11160222	3300019877	Soil	ALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0193739_10032125	3300020003	Soil	LWLLAHRLPFGYDSAAMLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0193732_10661431	3300020012	Soil	TFGYDSRRMLSRAQEARVRALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0179594_101289142	3300020170	Vadose Zone Soil	MLSRAQEARVHAILWSSQPGTIHTYCLEHLATAAQIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADPHETKQTLVCGPPSRRVAQGLT
Ga0210399_100764154	3300020581	Soil	MSARSATIAGAVLSRAQETRVRSILWGSSSRTHCLEHLATAAKIPHGHLSDLAAFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVTQGRTR
Ga0210378_101928102	3300021073	Groundwater Sediment	MLSRAQEARVRAILWSSPTGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0224452_10038743	3300022534	Groundwater Sediment	MLSRAQEARVRAILWSSPTGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVARGLT
Ga0222623_101490101	3300022694	Groundwater Sediment	RAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRPVAQGLT
Ga0207653_101901832	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAARTT
Ga0207684_100155125	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALLWSGPAGTVQTYCLEHLATAARILPGHLSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTVVWGPPAQLVAQGLR
Ga0207684_100454193	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEWHGFGLLAQPCAFGYDSRAVLSRAQEGRVRGILWSSPTGVIQTYCLEHLATAAKIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVAQGQT
Ga0207684_101165222	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAARTT
Ga0207684_101410764	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0207660_101264902	3300025917	Corn Rhizosphere	MLSRAQEARVRETLWRGSAATVQTYCLEHLATAAKIPPGHMSDLAVFVRGLHERGDCQRRFGGFCDADRHETKQILVSGPPSRRGAQSAT
Ga0207646_105198231	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LLFGYDSLAMLSRAQEARVRALLWSGPAGTVQTYCLEHLATAARILPGHLSDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTVVWGPPAQLVAQGLR
Ga0209438_10351743	3300026285	Grasslands Soil	MEWHGFGLLAQPCAFGYDSRAVLSRAQEGRVRGILWSSPTGVTQTYCLEHLATAAKIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPIRLVAQG
Ga0257173_10538932	3300026360	Soil	SPAMLSRAQEARVQAILWSSPPRTIQTYCLEHLATAAKIPPGHLPDLAVFVRTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVAQGLT
Ga0257172_10174323	3300026482	Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCKAGRHETRQTLVWGPSPRLRAEGT
Ga0257157_10079253	3300026496	Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAERT
Ga0257165_10020731	3300026507	Soil	RGAFGYDSRRMLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0209177_103974781	3300027775	Agricultural Soil	QGKARRGVAWLGLAGKARRGSPTPARSATIARAMLSRAQEARVRAILWSSPPGAIQTYCLEHLATAAKISSGHLSDLAIFARTLHERGDCQRRFGGFCDADRHETRQTLVWGPPTRRAAQGRT
Ga0209074_100887991	3300027787	Agricultural Soil	KARRGSPTPARSATIARAMLSRAQEARVRAILWSSPPGAIQTYCLEHLATAAKISSGHLSDLAIFARTLHERGDCQRRFGGFCDADRHETRQTLVWGPPTRRAAQGRT
Ga0209068_100645271	3300027894	Watersheds	MLSRAQEARIRALIWSSSPGLLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0209526_100114113	3300028047	Forest Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0209526_107289341	3300028047	Forest Soil	MLSRAQEARIRALIWGSSPGTLLTYCLEHLSTAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRTT
Ga0137415_102686483	3300028536	Vadose Zone Soil	MLSRAQEARIRALIWGSSPGTLLTYCLEHLANSAKIPASHMSDLAVFVRSLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0307504_100846662	3300028792	Soil	WAFCQRHLCALALRLSLGYDTGAMLSRAQEARVRAILWSSPAGTVQTYCLEHLATAAKIPPGHMSDLAVFARTLHERGDCQRRFGGFCDADRHETKQILVWGPPARLVAQELT
(restricted) Ga0255310_100360702	3300031197	Sandy Soil	MPHSPPPVPLAQSSAFGYDSPAMLSRAQEARVRAILWNSPPGTIQTYCLEHLATAAKIPPGHMSDLAVFVRTLHERGDCQRRFGGFCDAARHETRQTLVWGPPTRLVAQA
Ga0307469_103423433	3300031720	Hardwood Forest Soil	FGYDSRAVLSRAQEGRVRGILWSSPTGVIQTYCLEHLATAANIPPGHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVAQGQT
Ga0307469_104737492	3300031720	Hardwood Forest Soil	MLSRAQEARVRGILWSGASGSYCLEHLATAAKIPSGHMSDLAVFVRSLHERGDCQRRFGGFCDADRHETKQILVSGPPTRPVAQR
Ga0307468_1003489762	3300031740	Hardwood Forest Soil	MLSRAQEARVRGILWSGASGSYCLEHLATAAKIPSGHMSDLAVFVRSLHERGDCQRRFGGFCDADRHETKQILVSGPPTRPVAQRLT
Ga0307468_1012841411	3300031740	Hardwood Forest Soil	SRAVLSRAQEGRVRGILWSSPTGVIQTYCLEHLATAAKIPPEHMADLAVFVRTLHERGDCQRRFGGFCDADGHETKQTLVWGPPTRLVAQGQT
Ga0307473_100160852	3300031820	Hardwood Forest Soil	MLSRAQEARVRALIWTSSPGTLLTYCLEHLATSARIPASHMSDLAVFVRSLHDRGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAEGT
Ga0307473_101194742	3300031820	Hardwood Forest Soil	MPARSATIARAVLSRAQEARVRATLWSSSSKTYCLEHLATAAKIPSGHLSDLAAFVRTLHERGDCQRRFGGFCDAHAHETRQILVWGPPARLVAPGRA
Ga0307479_103156132	3300031962	Hardwood Forest Soil	MARAMLSRAQEARVRDALTHHPPGTIQLYCLEHLAAAALIPPAHLADLAAFVRVLREHGTCQTQYGGLCDADAAPDLGVADSCRRPL
Ga0307470_105961381	3300032174	Hardwood Forest Soil	RIRALIWGSSPGTLLTYCLEHLATAARIPTSHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRTT
Ga0307471_1009045271	3300032180	Hardwood Forest Soil	SQETHVRSILWGSSSRTHCLEHLATAAKIPSGHLSDLAAFVQTLHERGDCQRRFGGFCDADRHETKQTLVWGPPTRLVEQGRT
Ga0307471_1016657241	3300032180	Hardwood Forest Soil	MLSRAQEARIRALIWGSSPGTLLTYCLEHLATAARIPTGHMSDLAVFVRTLHERGDCQRRFGGFCEAGRHETRQTLVWGPSPRLRAGRTT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters