Metagenome / Metatranscriptome Family F062931

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062931
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	52 residues
Representative Sequence	MTETWETTVRTAANTMLRYPDKISDGLEAELYALLEQLDTAKAEQPEST
Number of Associated Samples	100
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.92 %
% of genes near scaffold ends (potentially truncated)	14.62 %
% of genes from short scaffolds (< 2000 bps)	77.69 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.769 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil (10.769 % of family members)
Environment Ontology (ENVO)	Unclassified (25.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.65% β-sheet: 0.00% Coil/Unstructured: 49.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF13581	HATPase_c_2	15.38
PF13560	HTH_31	13.08
PF04149	DUF397	3.85
PF07508	Recombinase	0.77
PF10935	DUF2637	0.77
PF00990	GGDEF	0.77
PF02452	PemK_toxin	0.77
PF01381	HTH_3	0.77
PF00150	Cellulase	0.77
PF04978	DUF664	0.77
PF08327	AHSA1	0.77
PF13360	PQQ_2	0.77
PF01041	DegT_DnrJ_EryC1	0.77
PF00155	Aminotran_1_2	0.77
PF12680	SnoaL_2	0.77
PF08281	Sigma70_r4_2	0.77
PF04993	TfoX_N	0.77
PF01420	Methylase_S	0.77
PF02604	PhdYeFM_antitox	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.77
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.77
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.77
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.77
COG0732	Restriction endonuclease S subunit	Defense mechanisms [V]	0.77
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.77
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.77
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.77
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.77
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.77
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.77
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.77
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.77
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
All Organisms	root	All Organisms	39.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
cellular organisms	root	All Organisms → cellular organisms	38.46 %
Viruses	superkingdom	All Organisms → Viruses	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.92 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	2.31 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.54 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.92 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.31 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.54 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.92 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.54 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	0.77 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.77 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	0.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.92 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.54 %
Actinoplanes humidus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes humidus	0.77 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.77 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	0.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573002\|GZIGXIF01D0GZD	Not Available	527	Open in IMG/M
3300000567\|JGI12270J11330_10037052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2772	Open in IMG/M
3300001356\|JGI12269J14319_10127245	Not Available	1156	Open in IMG/M
3300003368\|JGI26340J50214_10182723	Not Available	520	Open in IMG/M
3300004091\|Ga0062387_101501455	Not Available	540	Open in IMG/M
3300004635\|Ga0062388_100090896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2155	Open in IMG/M
3300005434\|Ga0070709_10702957	Not Available	787	Open in IMG/M
3300005437\|Ga0070710_10709996	Not Available	710	Open in IMG/M
3300005534\|Ga0070735_10000468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43903	Open in IMG/M
3300005591\|Ga0070761_10191381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1210	Open in IMG/M
3300005591\|Ga0070761_10430010	Not Available	808	Open in IMG/M
3300005591\|Ga0070761_10575486	Not Available	699	Open in IMG/M
3300005591\|Ga0070761_10914431	Not Available	555	Open in IMG/M
3300005602\|Ga0070762_10108785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1614	Open in IMG/M
3300005602\|Ga0070762_11170654	Not Available	531	Open in IMG/M
3300005610\|Ga0070763_10023863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2732	Open in IMG/M
3300005712\|Ga0070764_10585248	Not Available	679	Open in IMG/M
3300005952\|Ga0080026_10017881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1705	Open in IMG/M
3300005952\|Ga0080026_10149637	Not Available	675	Open in IMG/M
3300005995\|Ga0066790_10279675	Not Available	711	Open in IMG/M
3300006028\|Ga0070717_10129875	Not Available	2166	Open in IMG/M
3300006059\|Ga0075017_100203241	Not Available	1434	Open in IMG/M
3300006176\|Ga0070765_100449948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1207	Open in IMG/M
3300006176\|Ga0070765_101843570	Not Available	567	Open in IMG/M
3300006579\|Ga0074054_10544087	Not Available	529	Open in IMG/M
3300006581\|Ga0074048_12968748	Not Available	527	Open in IMG/M
3300006605\|Ga0074057_11852478	Not Available	524	Open in IMG/M
3300006606\|Ga0074062_12547149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	930	Open in IMG/M
3300009029\|Ga0066793_10408164	Not Available	780	Open in IMG/M
3300009521\|Ga0116222_1255010	Not Available	757	Open in IMG/M
3300009623\|Ga0116133_1111991	Not Available	699	Open in IMG/M
3300009624\|Ga0116105_1248809	Not Available	505	Open in IMG/M
3300009628\|Ga0116125_1213643	Not Available	552	Open in IMG/M
3300009665\|Ga0116135_1062718	Not Available	1304	Open in IMG/M
3300009683\|Ga0116224_10026846	Not Available	2833	Open in IMG/M
3300010343\|Ga0074044_10037235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3391	Open in IMG/M
3300010379\|Ga0136449_100813291	Not Available	1541	Open in IMG/M
3300010379\|Ga0136449_100946324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1396	Open in IMG/M
3300010379\|Ga0136449_103322059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300010379\|Ga0136449_103776715	Not Available	570	Open in IMG/M
3300010876\|Ga0126361_10168474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	6329	Open in IMG/M
3300010876\|Ga0126361_10169482	Not Available	858	Open in IMG/M
3300010876\|Ga0126361_10877148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2069	Open in IMG/M
3300010876\|Ga0126361_10940737	Not Available	700	Open in IMG/M
3300010876\|Ga0126361_10952679	Not Available	1033	Open in IMG/M
3300010880\|Ga0126350_10357653	Not Available	557	Open in IMG/M
3300010880\|Ga0126350_12067996	Not Available	912	Open in IMG/M
3300010880\|Ga0126350_12210342	Not Available	620	Open in IMG/M
3300011270\|Ga0137391_10130326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2186	Open in IMG/M
3300012211\|Ga0137377_10443836	Not Available	1236	Open in IMG/M
3300014492\|Ga0182013_10049117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3238	Open in IMG/M
3300017822\|Ga0187802_10080983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1210	Open in IMG/M
3300017823\|Ga0187818_10231341	Not Available	807	Open in IMG/M
3300017924\|Ga0187820_1020233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1670	Open in IMG/M
3300017924\|Ga0187820_1031629	Not Available	1374	Open in IMG/M
3300017926\|Ga0187807_1095736	Not Available	932	Open in IMG/M
3300017932\|Ga0187814_10057131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1435	Open in IMG/M
3300017933\|Ga0187801_10463798	Not Available	533	Open in IMG/M
3300017937\|Ga0187809_10234822	Not Available	659	Open in IMG/M
3300017942\|Ga0187808_10255345	Not Available	785	Open in IMG/M
3300017943\|Ga0187819_10577871	Not Available	638	Open in IMG/M
3300017946\|Ga0187879_10044387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2636	Open in IMG/M
3300017946\|Ga0187879_10578981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	623	Open in IMG/M
3300017948\|Ga0187847_10580057	Not Available	626	Open in IMG/M
3300017970\|Ga0187783_10399624	Not Available	998	Open in IMG/M
3300017972\|Ga0187781_10791639	Not Available	688	Open in IMG/M
3300017975\|Ga0187782_10902881	Not Available	685	Open in IMG/M
3300018001\|Ga0187815_10350741	Not Available	627	Open in IMG/M
3300018034\|Ga0187863_10282894	Not Available	922	Open in IMG/M
3300018034\|Ga0187863_10880301	Not Available	509	Open in IMG/M
3300018035\|Ga0187875_10188770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1141	Open in IMG/M
3300018037\|Ga0187883_10188375	Not Available	1058	Open in IMG/M
3300018043\|Ga0187887_10148348	Not Available	1404	Open in IMG/M
3300018044\|Ga0187890_10694962	Not Available	574	Open in IMG/M
3300018046\|Ga0187851_10150230	Not Available	1410	Open in IMG/M
3300018047\|Ga0187859_10467656	Not Available	699	Open in IMG/M
3300020579\|Ga0210407_11482846	Not Available	501	Open in IMG/M
3300020582\|Ga0210395_10129363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1878	Open in IMG/M
3300020582\|Ga0210395_10986641	Not Available	624	Open in IMG/M
3300020583\|Ga0210401_10151087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2171	Open in IMG/M
3300021401\|Ga0210393_11090074	Not Available	645	Open in IMG/M
3300021406\|Ga0210386_10037910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3801	Open in IMG/M
3300021479\|Ga0210410_11013328	Not Available	720	Open in IMG/M
3300023101\|Ga0224557_1011652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5174	Open in IMG/M
3300025929\|Ga0207664_10104129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2349	Open in IMG/M
3300026294\|Ga0209839_10015194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3106	Open in IMG/M
3300026294\|Ga0209839_10018744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2744	Open in IMG/M
3300026374\|Ga0257146_1044819	Not Available	717	Open in IMG/M
3300026551\|Ga0209648_10396052	Not Available	910	Open in IMG/M
3300027497\|Ga0208199_1013171	Not Available	1902	Open in IMG/M
3300027528\|Ga0208985_1023997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1182	Open in IMG/M
3300027652\|Ga0209007_1133217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	620	Open in IMG/M
3300027853\|Ga0209274_10308680	Not Available	813	Open in IMG/M
3300027855\|Ga0209693_10026768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2796	Open in IMG/M
3300027884\|Ga0209275_10640458	Not Available	611	Open in IMG/M
3300027889\|Ga0209380_10292749	Not Available	956	Open in IMG/M
3300027895\|Ga0209624_10918612	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300027905\|Ga0209415_10256999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes humidus	1563	Open in IMG/M
3300027905\|Ga0209415_10761610	Not Available	682	Open in IMG/M
3300027986\|Ga0209168_10000871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26495	Open in IMG/M
3300029943\|Ga0311340_10447968	All Organisms → Viruses → Predicted Viral	1170	Open in IMG/M
3300029943\|Ga0311340_11121281	Not Available	638	Open in IMG/M
3300029999\|Ga0311339_10234541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2035	Open in IMG/M
3300029999\|Ga0311339_10730728	Not Available	964	Open in IMG/M
3300030013\|Ga0302178_10093578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1557	Open in IMG/M
3300030399\|Ga0311353_10975892	Not Available	711	Open in IMG/M
3300030494\|Ga0310037_10001038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15747	Open in IMG/M
3300030503\|Ga0311370_10656503	Not Available	1242	Open in IMG/M
3300030524\|Ga0311357_11644402	Not Available	539	Open in IMG/M
3300030580\|Ga0311355_11326791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	629	Open in IMG/M
3300030618\|Ga0311354_11830863	Not Available	527	Open in IMG/M
3300030730\|Ga0307482_1270022	Not Available	539	Open in IMG/M
3300031234\|Ga0302325_10180755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3684	Open in IMG/M
3300031234\|Ga0302325_12917903	Not Available	556	Open in IMG/M
3300031561\|Ga0318528_10014184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3691	Open in IMG/M
3300031708\|Ga0310686_100124883	Not Available	1062	Open in IMG/M
3300031708\|Ga0310686_101206013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1611	Open in IMG/M
3300031708\|Ga0310686_101353623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	781	Open in IMG/M
3300031708\|Ga0310686_108508851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1148	Open in IMG/M
3300031823\|Ga0307478_10514155	Not Available	998	Open in IMG/M
3300032160\|Ga0311301_10425679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2016	Open in IMG/M
3300032782\|Ga0335082_10514776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1059	Open in IMG/M
3300032828\|Ga0335080_12359116	Not Available	508	Open in IMG/M
3300032892\|Ga0335081_10100705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4297	Open in IMG/M
3300032895\|Ga0335074_10038979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6627	Open in IMG/M
3300032895\|Ga0335074_10071996	Not Available	4663	Open in IMG/M
3300032895\|Ga0335074_10719064	Not Available	956	Open in IMG/M
3300034065\|Ga0334827_030566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	2131	Open in IMG/M
3300034124\|Ga0370483_0070437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1125	Open in IMG/M
3300034124\|Ga0370483_0072684	Not Available	1110	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.92%
Aquatic	Environmental → Aquatic	23.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.15%
Freshwater	Environmental → Aquatic → Freshwater	22.31%
Peat	Environmental → Terrestrial → Peat	10.77%
Sediment	Environmental → Aquatic → Sediment	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.31%
Loam	Environmental → Terrestrial → Soil → Loam	16.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.23%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.38%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.00%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.23%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	6.15%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.62%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.08%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.54%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.54%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.54%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.77%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.77%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.77%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE1_08469180	2189573002	Grass Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLDTATADQPEARRT
JGI12270J11330_100370525	3300000567	Peatlands Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLGTATADQPEARRT*
JGI12269J14319_101272452	3300001356	Peatlands Soil	MSDTWETTVRTAANTMLGYPDKISDGLEAELYALLEQLDTATAEQPQGTSKPDDAA*
JGI26340J50214_101827232	3300003368	Bog Forest Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYVPLEQLDTATADQPEARRT*
Ga0062387_1015014552	3300004091	Bog Forest Soil	MPDTWETIVRTAAAAMLRYPERISDGLEAELYALLEQLGTTTAEQPDSTSKSARG*
Ga0062388_1000908962	3300004635	Bog Forest Soil	MTETWETTVRTAATTLLRYSDQISDGLEAELYALLEVLDNIATAEPPESKK*
Ga0070709_107029572	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRDSWEAAVRTAANTMLRFPDKISDGLEAELYALLEKLRTPKGGQPEKPG*
Ga0070710_107099961	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRDSWEAAVRTAANTMLRFPDKISDGLEAELYALLEKLCTPKAGQPEKPG*
Ga0070735_1000046814	3300005534	Surface Soil	MTDTWATAIRTAADTMLRYPDKISDGLEAELYALLEQLDTAKAEHPEGTR*
Ga0070761_101913812	3300005591	Soil	MAETWETAVRTAANTMLRFPDKISDGLEAELYALLEQLDTTTAEQPASTGT*
Ga0070761_104300102	3300005591	Soil	MTETWETTVRTAANTMLRYPDKISDGLEAELWALLEKLGADQPESTR*
Ga0070761_105754863	3300005591	Soil	MPDTWETTIRTAAAAMLRYPDKISDGLEAELYALLEQLGTATAGQPERTDTSPARG*
Ga0070761_109144312	3300005591	Soil	MPDTWENTIRTAAATMLRYPERLSDGLEAELYALLDQLGTATAEHPDRATKPPARG*
Ga0070762_101087852	3300005602	Soil	MAETWETAVRTAANTMLRYPDKISDGLEAELYALLEQLDTATAEQSASTGR*
Ga0070762_111706542	3300005602	Soil	MTDTWETTVRTAANTMLRYPEKISDGLEAELYALLEGLDSTAKAEQPESTR*
Ga0070763_100238635	3300005610	Soil	MAETWETAVRTAANTMLRFPDKISDGLEAELYALLEQLDTATAEQSASTGR*
Ga0070764_105852481	3300005712	Soil	MPDAWETTVRRAATTMLRYPDKISDGLEAELYALLEQLGTAAAGPP
Ga0080026_100178815	3300005952	Permafrost Soil	MNDTWETTVRTAANTMLRYPDKISDGLEAELYALLQKLGTAKADQPV*
Ga0080026_101496372	3300005952	Permafrost Soil	MRDTWEETVRTAANTMLRDPGRISDGLEAELYALLENLGTPKAGQPESTGRPDDAA*
Ga0066790_102796752	3300005995	Soil	MRDTWETTVWTAATTMLRYPDKISDGLEAELYALLEQLGTPETGRPESTGTPDDAA*
Ga0070717_101298753	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTDTWETTVRTAATTTLRYRDKISDGLEAELYALLEALDNTGKAEPSESIK*
Ga0075017_1002032414	3300006059	Watersheds	MTDTWETTVRTAATAMLRYPERISDGLEAELYALLEQLDTATADQPEARRT*
Ga0070765_1004499482	3300006176	Soil	MAETWETAVRTAANTMLRYPDKISDGLEAELYALLEQLDTATAEQPASMGTLADAG*
Ga0070765_1018435702	3300006176	Soil	MPDTWENTVRTAAATMLRYPERISDGLEAELYALLEQLGTAIAEHPDRATKPQAR
Ga0074054_105440872	3300006579	Soil	MTDTWEMTVRAAANTMPRHPDKISDGLEAELYALLEQLGTPHDDQPGSTAKPDDAP*
Ga0074048_129687482	3300006581	Soil	MTDTWEMTVRAAANTMPRHPDKISDGLEAELYALLEQLDTPHDDQPGSTGKPDDAP*
Ga0074057_118524782	3300006605	Soil	RTAANTMLAYPDKISDGLEAELYALLEQLGTPHDDQPGSTGKPDDAP*
Ga0074062_125471492	3300006606	Soil	MTDTWEITVRTAANTMLRHPDKISDGLEAELYALLEQLGTPHDDQPGSTGKPDDAP*
Ga0066793_104081643	3300009029	Prmafrost Soil	MRDTWETTVWTAATTMLRYPDKISDGLEAELYALLETLGTTKEDQP
Ga0116222_12550103	3300009521	Peatlands Soil	MSDTWETTVRTAANTMLSYPDKISDGLEAELYALLEQLDTATAEQPQGTSKPEDAA*
Ga0116133_11119912	3300009623	Peatland	MNNSWETTARTAATTMLRHPDKISDGLEAELYALLEQLGAPETGRPQSTSQPASTRSTP*
Ga0116105_12488091	3300009624	Peatland	IRTAANTMLRDPNRISDGLEAELYALLEKLGNPEQPESTPGDAA*
Ga0116125_12136432	3300009628	Peatland	WETTARTAAATMLRHPGKISDGLEAELYALLEQLGTPQAGRPEATGQPDGAA*
Ga0116135_10627183	3300009665	Peatland	MSNTWEETIRTAANTMLRDPNRISDGLEAELYALLEKLGNPEQPESTPGDAA*
Ga0116224_100268463	3300009683	Peatlands Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLDTATADQPEARRT*
Ga0074044_100372356	3300010343	Bog Forest Soil	MTVRTAANTMLRHPDKISDGLEAELYALLDQLGTPQDDQPQSTDKPDDAP*
Ga0136449_1008132911	3300010379	Peatlands Soil	MRDNTWETTVRTAANTMLRYPDKISDGLEAELYALLENLGTAEEDQPEGAGEPDDAA*
Ga0136449_1009463243	3300010379	Peatlands Soil	MTDTWEITVRTAANTMLRHPDKISDGLEAELYALLEQLDTPHDDQPGSTDKPDDAA*
Ga0136449_1033220593	3300010379	Peatlands Soil	MTDTWEMTVRTAANTMLRHPDKISDGLEAELYALLEQLDTPQDDQPGSTGKPDDAA*
Ga0136449_1037767152	3300010379	Peatlands Soil	CDEMTDTWETTVRTAATTMLRYPERISDGLEAELYALLEELDTSKAEQPEGAGTPDDAA*
Ga0126361_101684747	3300010876	Boreal Forest Soil	MYPMSDTWEETIRTAANTMLGDPNRISDGLEAELYALLEKLGNPEQPESTPGDAA*
Ga0126361_101694822	3300010876	Boreal Forest Soil	MTDTWETTVRTAANAMLRYPDKISDGLEAELYALLEKLDTAQAEQPESTR*
Ga0126361_108771484	3300010876	Boreal Forest Soil	MRDTWETTLRTAATTMLRYPAKISDGLEAELYALLEKLGTPETGPPKNAGQPDDAA*
Ga0126361_109407372	3300010876	Boreal Forest Soil	MRDTWETTVRTAAATMLRYPDKISDGLEAELYALLEHLG
Ga0126361_109526792	3300010876	Boreal Forest Soil	MTDTWETTVRTAATTMLRDPERISDGLEAELYALLEQLDTTTADQPEARRT*
Ga0126350_103576531	3300010880	Boreal Forest Soil	MTDTWETTVRTAANTMLRYPDKISDGLEAELYALLEKLDTTAEAEQPESMR*
Ga0126350_120679962	3300010880	Boreal Forest Soil	MPDTWETTVRTAAATMLRHPDKISDGLEAELYALLEQLGPPQAGHPQATGQPDDAA*
Ga0126350_122103422	3300010880	Boreal Forest Soil	MSDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLD
Ga0137391_101303264	3300011270	Vadose Zone Soil	MTDTWEMTVRTAANTMLRHPDKLSDGLEAELYALLDQLGTPRDDQPGSTGKPDDAT*
Ga0137377_104438362	3300012211	Vadose Zone Soil	MTDTWETTLRTAANTMLRYPDKISDGLEAELYALLEKLDTAKAEQPESTR*
Ga0182013_100491175	3300014492	Bog	MRDNWETAVRTAAATMLRYPDKISDGLEAELYALLEHLGPTQAGQPQSTDQPDDAA*
Ga0187802_100809833	3300017822	Freshwater Sediment	MTDTWETTVRTAATTMLRYPDKISDGLEAELYALLEALDHTAKAEQANPSSPLP
Ga0187818_102313412	3300017823	Freshwater Sediment	MTDTWETTVRTAANTMLRYPDKISDGLEAELYALLEALDHTAKAEQANPSSPLP
Ga0187820_10202331	3300017924	Freshwater Sediment	TTVRTAATTMLRYPERISDGLEAELYALLEQLDTATADQPEARRT
Ga0187820_10316293	3300017924	Freshwater Sediment	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLDTATADQPEAPRT
Ga0187807_10957363	3300017926	Freshwater Sediment	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLDQLDTATADQPEARRT
Ga0187814_100571313	3300017932	Freshwater Sediment	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLE
Ga0187801_104637982	3300017933	Freshwater Sediment	MTDTWETTVRTAANTMLRYPDKISDGLEAELYALLEKLDTAKAEQPEITR
Ga0187809_102348221	3300017937	Freshwater Sediment	TTVRTAATTMLRYPERISDGLEAELYALLDQLDTATADQPEARRT
Ga0187808_102553451	3300017942	Freshwater Sediment	MTDTWETTVRTAANTMLSYPDKISDGLEAELYALLEALDHTAKAEQPHPSPPLP
Ga0187819_105778711	3300017943	Freshwater Sediment	TTMTDTWETTVRTAANTMLRYPDKISDGLEAELYALLEALDHTAKAEQANPSSPLP
Ga0187879_100443874	3300017946	Peatland	MSDTWEETIRTAANTMLGDPNRISDGLEAELYALLEKLDNPEQPESTPGDAA
Ga0187879_105789811	3300017946	Peatland	MRDTWETTVRTAAATMLRYPDKISDGLEAELYALLEQLGAPETGRPQSTSQPASTRSTP
Ga0187847_105800572	3300017948	Peatland	MSDIWEETIRTAANTMLRDPNRISDGLEAELYALLEKLDHPEQPESTPGDAA
Ga0187783_103996243	3300017970	Tropical Peatland	MTDTWETTVRTAAITMLRYPERISDGLEAELYALLEQLDTATADQPEARRT
Ga0187781_107916393	3300017972	Tropical Peatland	MNDTWETAVRAAAATILRYPERLSDGLEAELYALLEQLGTVQAERPGSTMMPHDLGDEEHQRHRP
Ga0187782_109028812	3300017975	Tropical Peatland	MARTHGRYDDMTDTWETNVRTAATTMLRYPDKISDGLEAELYALLEKLDTATAEQPESTR
Ga0187815_103507411	3300018001	Freshwater Sediment	MTDTWETTVRTAATTMLRYPDKISDGLEAELYALLEALDRTAKAEQSYLSSPSP
Ga0187863_102828943	3300018034	Peatland	MSNTWEETIRTAANTMLRDPNRISDGLEAELYALLEKLGNPEQPENTPGDAA
Ga0187863_108803013	3300018034	Peatland	MPDTWETTARTAAATMLRHPGKISDGLEAELYALLEHLGPTQAGQPQSTD
Ga0187875_101887703	3300018035	Peatland	MSNTWEETIRTAANTMLGDPNRISDGLEAELYALLEKLGNPE
Ga0187883_101883752	3300018037	Peatland	MSDTWEETIRTAANTMLGDPNRISDGLEAELYALLEKLGNPEQPENTPGDAA
Ga0187887_101483483	3300018043	Peatland	MSNTWEETIRTAANTMLRDPNRISDGLEAELYALLEKLDNPEQPESTPGDAA
Ga0187890_106949622	3300018044	Peatland	MSDTWEETIRTAANTMLHDPNKISDGLEAELYALLEKLGHPGQPGSTPGDAA
Ga0187851_101502302	3300018046	Peatland	MSNTWEETIRTAANTMLGDPNRISDGLEAELYALLEKLGNPEQPESTPGDAA
Ga0187859_104676562	3300018047	Peatland	MSNTWEETIRTAANTMLRDPNKISDGLEAELYALLEKLGNPEQPESTPGDAA
Ga0210407_114828461	3300020579	Soil	MTDTWETTVRTAANTMLNYAEKLSAGLWAELYALLEALDSTPTAEQPKSTR
Ga0210395_101293634	3300020582	Soil	MTDTWETTVRTAANTMLRDPAKISDGLVAELYALLEQLDTTAEAEQPESTR
Ga0210395_109866412	3300020582	Soil	MTETWETSVRTAANTMLRDPGKISDGLEAELYALLEQLDTAKAERPASTGTPDAA
Ga0210401_101510872	3300020583	Soil	MTDTWETTVRRAANTMLRYPDRISDGLEAELYALLEQLGTATAGQPESVGKPSAKG
Ga0210393_110900742	3300021401	Soil	MTDTWETTVRTAANTMLRYPEKISDGLEAELYALLEGLDRTAEAERPESTR
Ga0210386_100379107	3300021406	Soil	MTETWETTVRTAADTMLRYPEKLSAGLEAELYALLEKLDSAPAD
Ga0210410_110133282	3300021479	Soil	MTDTWETTVRTAANTMLRYPDKISDGLEAELYALLEKLNIAEAEQPQSTR
Ga0224557_10116527	3300023101	Soil	MRDNWETAVRTAAATMLRYPDKISDGLEAELYALLEHLGPTQAGQPQSTDQPDDAA
Ga0207664_101041295	3300025929	Agricultural Soil	MRDSWEAAVRTAANTMLRFPDKISDGLEAELYALLEKLRTPKGGQPEKPG
Ga0209839_100151945	3300026294	Soil	MRDTWETTVWTAATTMLRYPDKISDGLEAELYALLEQLGTPETGRPESTGTPDDAA
Ga0209839_100187442	3300026294	Soil	MRDTWEETVRTAANTMLRDPGRISDGLEAELYALLENLGTPKAGQPESTGRPDDAA
Ga0257146_10448192	3300026374	Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLDTATADQPGARRT
Ga0209648_103960522	3300026551	Grasslands Soil	MTDTWETTVRAAATTMLRYPERISDGLEAELYALLQQLDTATADQPEARRT
Ga0208199_10131713	3300027497	Peatlands Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLEQLGTATADQPEARRT
Ga0208985_10239972	3300027528	Forest Soil	MRDTWEMTVRAAANTMLRHPDKISDGLEAELYALLERLDTSQDDQPGSTGKPDDAA
Ga0209007_11332172	3300027652	Forest Soil	MTETWETAVRTAANTMLRHPDKISDGLEAELYALLEQLDTPTAEQPASTGT
Ga0209274_103086803	3300027853	Soil	MPDAWETTVRRAATTMLRYPDKISDGLEAELYALLEQLGTAAAGPPQSTTKPPTRG
Ga0209693_100267682	3300027855	Soil	MAETWETAVRTAANTMLRFPDKISDGLEAELYALLEQLDTATAEQSASTGR
Ga0209275_106404582	3300027884	Soil	MTDTWETTVRTAANTMLRYPEKISDGLEAELYALLEGLDSTAKAEQPESTR
Ga0209380_102927492	3300027889	Soil	MTDTWETTVRTAANTMLRYPDKISDGLEAELYALLEVLDNTATAGNLRAQGEHTG
Ga0209624_109186122	3300027895	Forest Soil	MAETWETAVRTAANTMLRYPDKISDGLEAELYALLEQLDTPTAEQPASTGT
Ga0209415_102569992	3300027905	Peatlands Soil	MSDTWETTVRTAANTMLGYPDKISDGLEAELYALLEQLDTATAEQPQGTSKPDDAA
Ga0209415_107616102	3300027905	Peatlands Soil	MRGTWEMTVRTAANTMLRHPDKISDGLEAELYALLEQLGTSQDGQPGSTGKPDDAA
Ga0209168_1000087114	3300027986	Surface Soil	MTDTWATAIRTAADTMLRYPDKISDGLEAELYALLEQLDTAKAEHPEGTR
Ga0311340_104479683	3300029943	Palsa	MRDTWEMAVRTAANTMLRYPDRISDGLEAELYALLEELDTSKAEQPEGAGTPDDAA
Ga0311340_111212811	3300029943	Palsa	MPDTWETTVRAAAATMLRYPDKISDGLEAELYALLEQLGTTP
Ga0311339_102345413	3300029999	Palsa	MPDTWETTIRTAADTMLRYPDKISDGLEAELYALLEQLGTAAAGPPESTTKPPTPG
Ga0311339_107307282	3300029999	Palsa	MRDTWEMAVRTAANTMLRYPDRISDGLEAELYALLEELDTAKAEQTDSTGTPDDAA
Ga0302178_100935781	3300030013	Palsa	MSDTWETSVRRAANTMLRYPDKISDGLEAELYALLEELDTSKAEQPEGAGTPDDAA
Ga0311353_109758922	3300030399	Palsa	MSDTWETSVRRAANTMLRYPDKISDGLEAELYALLEELDTAKAEQTDSTGTPDDAA
Ga0310037_100010388	3300030494	Peatlands Soil	MSDTWETTVRTAANTMLSYPDKISDGLEAELYALLEQLDTATAEQPQGTSKPEDAA
Ga0311370_106565032	3300030503	Palsa	DMSDTWETSVRRAANTMLRYPDKISDGLEAELYALLEELDTAKAEQTDSTGTPDDAA
Ga0311357_116444021	3300030524	Palsa	MPDTWETTIRTAADTMLRYPDKISDGLEAELYALLEQLGTAAAGPPES
Ga0311355_113267911	3300030580	Palsa	MTETWETTVRTAANTMLRYPDKISDGLEAELYALLEQLDTAKAEQPEST
Ga0311354_118308631	3300030618	Palsa	MSDTWETSVRRAANTMLRYPDKISDGLEAELYALLEQLDTAKAELPENT
Ga0307482_12700221	3300030730	Hardwood Forest Soil	MTDTWETTVRTAANTMLRHPDKISDGLEAELYALLEKLDAEQPQSRR
Ga0302325_101807552	3300031234	Palsa	MTETWETTVRTAANTMLRYPDKISDGLEAELYALLEQLDTAKAELPEST
Ga0302325_129179032	3300031234	Palsa	MPDTWETTVRAAAATMLRYPDKISDGLEAELYALLEQLGTTPADPPGNTIKPPQE
Ga0318528_100141845	3300031561	Soil	MTDTWETTVRTAATTMLRHPDKISDGLEAELYALLEQLDTAKAEQPESTR
Ga0310686_1001248833	3300031708	Soil	MTDTWETTVRTAATTMLRYPERISDGLEAELYALLDQLDTATAEPEARRT
Ga0310686_1012060133	3300031708	Soil	MSDTWETTVRTAANTMLRYPEKISDGLEAELYALLEGLDSTAKAEQPESTR
Ga0310686_1013536231	3300031708	Soil	MTETWETAVRTAANTILRHPDKISDGLEAELYALLEQLDTATAEQPASTGTPDAA
Ga0310686_1085088512	3300031708	Soil	MTDTWETTVRTAANAMLRYPEKISDGLEAELYALLEALDHAAKAEQANPSSPLP
Ga0307478_105141554	3300031823	Hardwood Forest Soil	MPDTWETTVRTAAAAMLRHPERISDGLEAELYALLDQLGPATAGQPEPTSMPSRR
Ga0311301_104256794	3300032160	Peatlands Soil	MTDTWEITVRTAANTMLRHPDKISDGLEAELYALLEQLDTPHDDQPGSTDKPDDAA
Ga0335082_105147762	3300032782	Soil	MTDTWEMTVRTAANTMLRHPDKISDGLEAELYALLDQLDTSHDDQPGNTDTPDEAT
Ga0335080_123591162	3300032828	Soil	MKDTWEMTVRAAANTMLAYPDKISDGLEAELYALLDQLDTPQDDQPGSTGKPDDAP
Ga0335081_101007056	3300032892	Soil	MKDTWEMTVRAAANTMLAYPDKISDGLEAELYALLDQLGTPQDDQPGSTSTPDDAP
Ga0335074_100389794	3300032895	Soil	MTETWEMAVRAAANTMLAYPDKISDGLEAELYALLEQLGSGAAGEHGPA
Ga0335074_100719965	3300032895	Soil	MTDTWETVIRTAATTMLRHPDKISDGLEAELYALLEQLDMAQDQP
Ga0335074_107190641	3300032895	Soil	MTETWETAVRAAANTMLGYPDKISDGLEAELYALLEQLG
Ga0334827_030566_415_594	3300034065	Soil	MHHMRDNWETAVRTAAATMLRYPDKISDGLEAELYALLEHLGPTQAGQPQSTDQPDDAA
Ga0370483_0070437_439_618	3300034124	Untreated Peat Soil	MNNTWETTARTAATTMLRHPDKISDGLEAELYALLEQLGTPETGRPQSTSQPASTRSTP
Ga0370483_0072684_255_422	3300034124	Untreated Peat Soil	MYPMSDTWEETIRTAANTMLGDPNRISDGLEAELYALLEKLGNPEQPESTPGDAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062931

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences