Metagenome / Metatranscriptome Family F062898

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062898
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	85 residues
Representative Sequence	AAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Number of Associated Samples	107
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.15 %
% of genes near scaffold ends (potentially truncated)	89.23 %
% of genes from short scaffolds (< 2000 bps)	93.08 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.692 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (33.077 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.14% β-sheet: 3.57% Coil/Unstructured: 64.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF05163	DinB	5.38
PF04879	Molybdop_Fe4S4	4.62
PF08327	AHSA1	3.85
PF07676	PD40	3.85
PF00497	SBP_bac_3	3.08
PF06094	GGACT	3.08
PF13360	PQQ_2	3.08
PF13472	Lipase_GDSL_2	2.31
PF02518	HATPase_c	2.31
PF03162	Y_phosphatase2	1.54
PF02687	FtsX	1.54
PF13620	CarboxypepD_reg	1.54
PF03724	META	1.54
PF06439	3keto-disac_hyd	0.77
PF03466	LysR_substrate	0.77
PF13202	EF-hand_5	0.77
PF03699	UPF0182	0.77
PF00884	Sulfatase	0.77
PF13557	Phenol_MetA_deg	0.77
PF00437	T2SSE	0.77
PF12681	Glyoxalase_2	0.77
PF13738	Pyr_redox_3	0.77
PF00754	F5_F8_type_C	0.77
PF05974	DUF892	0.77
PF01565	FAD_binding_4	0.77
PF12146	Hydrolase_4	0.77
PF05656	DUF805	0.77
PF08450	SGL	0.77
PF00486	Trans_reg_C	0.77
PF01189	Methyltr_RsmB-F	0.77
PF03551	PadR	0.77
PF05016	ParE_toxin	0.77
PF03437	BtpA	0.77
PF00873	ACR_tran	0.77
PF00891	Methyltransf_2	0.77
PF07729	FCD	0.77
PF00072	Response_reg	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.38
COG2365	Protein tyrosine/serine phosphatase Oca4	Signal transduction mechanisms [T]	1.54
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	1.54
COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	Translation, ribosomal structure and biogenesis [J]	0.77
COG0434	Membrane biogenesis protein, BtpA/SgcQ family	Cell wall/membrane/envelope biogenesis [M]	0.77
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.77
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.77
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.77
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.77
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.77
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.77
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.77
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.77
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.77
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.69 %
Unclassified	root	N/A	2.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.69 %
Unclassified	root	N/A	2.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.69 %
Unclassified	root	N/A	2.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	73.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.62 %
Unclassified	root	N/A	2.31 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.54 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	69.23 %
Unclassified	root	N/A	2.31 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.54 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.54 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.23 %
Unclassified	root	N/A	2.31 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.54 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.77 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.23 %
Unclassified	root	N/A	2.31 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	1.54 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.77 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.23 %
Unclassified	root	N/A	2.31 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1.54 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.77 %
Amaricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.23 %
Unclassified	root	N/A	2.31 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1.54 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.77 %
Bradyrhizobium vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	0.77 %
Amaricoccus macauensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus → Amaricoccus macauensis	0.77 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_105247185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300000956\|JGI10216J12902_103015264	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300000956\|JGI10216J12902_107968415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300004081\|Ga0063454_100214574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1111	Open in IMG/M
3300004114\|Ga0062593_101146348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300004114\|Ga0062593_102994316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300004157\|Ga0062590_100539204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1007	Open in IMG/M
3300004463\|Ga0063356_103985836	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300005093\|Ga0062594_100776832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300005169\|Ga0066810_10006441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1585	Open in IMG/M
3300005330\|Ga0070690_100380268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300005347\|Ga0070668_102102139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300005356\|Ga0070674_101307735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300005440\|Ga0070705_101507605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300005456\|Ga0070678_100166058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1793	Open in IMG/M
3300005456\|Ga0070678_100227621	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300005457\|Ga0070662_100712852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300005564\|Ga0070664_100062429	All Organisms → cellular organisms → Bacteria	3176	Open in IMG/M
3300005615\|Ga0070702_101310193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300005719\|Ga0068861_100963412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005844\|Ga0068862_101979363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300006051\|Ga0075364_10462894	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300006195\|Ga0075366_10984902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300006196\|Ga0075422_10573625	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300006237\|Ga0097621_101426550	Not Available	656	Open in IMG/M
3300006358\|Ga0068871_101523501	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300006845\|Ga0075421_100879177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300006847\|Ga0075431_100256580	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300006847\|Ga0075431_100419394	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300006853\|Ga0075420_100103437	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300006881\|Ga0068865_100662558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300006918\|Ga0079216_10842507	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300006953\|Ga0074063_13514799	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	731	Open in IMG/M
3300007004\|Ga0079218_10066235	All Organisms → cellular organisms → Bacteria → Acidobacteria	2326	Open in IMG/M
3300009094\|Ga0111539_10923915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	1015	Open in IMG/M
3300009147\|Ga0114129_11651407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300009147\|Ga0114129_12145250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300009147\|Ga0114129_12925936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300009147\|Ga0114129_13467280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300009156\|Ga0111538_10106287	All Organisms → cellular organisms → Bacteria	3566	Open in IMG/M
3300009156\|Ga0111538_11220316	Not Available	950	Open in IMG/M
3300009162\|Ga0075423_11796624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300009176\|Ga0105242_10338591	All Organisms → cellular organisms → Bacteria → Acidobacteria	1386	Open in IMG/M
3300009177\|Ga0105248_11648831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300009177\|Ga0105248_11671350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300009553\|Ga0105249_11843454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300010047\|Ga0126382_10246981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1305	Open in IMG/M
3300010166\|Ga0126306_10594297	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	882	Open in IMG/M
3300010360\|Ga0126372_12420112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300010362\|Ga0126377_13509905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300010371\|Ga0134125_13124514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300010400\|Ga0134122_10734601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	933	Open in IMG/M
3300010403\|Ga0134123_11342154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300010403\|Ga0134123_11786281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300011119\|Ga0105246_12075431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300012892\|Ga0157294_10203024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300012898\|Ga0157293_10141167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300012902\|Ga0157291_10075472	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300012905\|Ga0157296_10132479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300012913\|Ga0157298_10154684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300012957\|Ga0164303_11310930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300013096\|Ga0157307_1044238	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	815	Open in IMG/M
3300013100\|Ga0157373_11365690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300014254\|Ga0075312_1121595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300014968\|Ga0157379_11003442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300015371\|Ga0132258_12769484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus → Amaricoccus macauensis	1222	Open in IMG/M
3300015372\|Ga0132256_101434460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300015372\|Ga0132256_102626538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300015373\|Ga0132257_100556561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1413	Open in IMG/M
3300015374\|Ga0132255_100719710	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300015374\|Ga0132255_102536525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300018079\|Ga0184627_10066251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1884	Open in IMG/M
3300019362\|Ga0173479_10677968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300021344\|Ga0193719_10339241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300022915\|Ga0247790_10093086	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300025893\|Ga0207682_10385639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300025912\|Ga0207707_10498649	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1038	Open in IMG/M
3300025925\|Ga0207650_10093335	All Organisms → cellular organisms → Bacteria → Acidobacteria	2304	Open in IMG/M
3300025926\|Ga0207659_10786166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300025933\|Ga0207706_10781093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300025938\|Ga0207704_11010147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300025945\|Ga0207679_10159202	All Organisms → cellular organisms → Bacteria → Acidobacteria	1847	Open in IMG/M
3300025945\|Ga0207679_10432145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300025945\|Ga0207679_11039721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300025960\|Ga0207651_10091873	All Organisms → cellular organisms → Bacteria → Acidobacteria	2224	Open in IMG/M
3300025981\|Ga0207640_11848836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300026075\|Ga0207708_10372921	All Organisms → cellular organisms → Bacteria → Proteobacteria	1175	Open in IMG/M
3300026121\|Ga0207683_10182582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1903	Open in IMG/M
3300027909\|Ga0209382_11713297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300028381\|Ga0268264_11578172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300028592\|Ga0247822_11972808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300028599\|Ga0265309_10425788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	873	Open in IMG/M
3300028600\|Ga0265303_11758909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300028802\|Ga0307503_10658140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300028809\|Ga0247824_10408339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300028884\|Ga0307308_10600163	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031229\|Ga0299913_12077374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300031538\|Ga0310888_11057369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300031547\|Ga0310887_10292877	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300031548\|Ga0307408_100179827	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300031731\|Ga0307405_10123066	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
3300031847\|Ga0310907_10302319	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300031854\|Ga0310904_10226015	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300031854\|Ga0310904_10316450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	994	Open in IMG/M
3300031854\|Ga0310904_11178005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300031858\|Ga0310892_10214509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300031901\|Ga0307406_10387346	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300031908\|Ga0310900_10175792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1479	Open in IMG/M
3300031908\|Ga0310900_11016366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300031908\|Ga0310900_11036144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300031913\|Ga0310891_10152877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300032000\|Ga0310903_10426115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300032000\|Ga0310903_10466944	Not Available	654	Open in IMG/M
3300032000\|Ga0310903_10783608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300032012\|Ga0310902_10041292	All Organisms → cellular organisms → Bacteria	2197	Open in IMG/M
3300032013\|Ga0310906_10041586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2193	Open in IMG/M
3300032013\|Ga0310906_11108414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300032017\|Ga0310899_10372946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300032075\|Ga0310890_10012263	All Organisms → cellular organisms → Bacteria	4117	Open in IMG/M
3300032075\|Ga0310890_10586743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300032075\|Ga0310890_11699669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300032122\|Ga0310895_10024928	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300033412\|Ga0310810_10934650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300033550\|Ga0247829_10488121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300034147\|Ga0364925_0211792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300034148\|Ga0364927_0202920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300034149\|Ga0364929_0299610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300034178\|Ga0364934_0030759	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
3300034666\|Ga0314788_199370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300034820\|Ga0373959_0177603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.15%
Host-Associated	Host-Associated	43.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.85%
Plants	Host-Associated → Plants	43.85%
Aquatic	Environmental → Aquatic	2.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.77%
Floodplain	Environmental → Terrestrial → Floodplain	3.08%
Roots	Host-Associated → Plants → Roots	3.08%
Marine	Environmental → Aquatic → Marine	1.54%
Sediment	Environmental → Aquatic → Sediment	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.54%
Loam	Environmental → Terrestrial → Soil → Loam	5.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.38%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.08%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.31%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	1.54%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.54%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.77%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	20.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.31%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	1.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.54%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.54%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.54%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.77%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	20.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.23%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.62%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.08%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.08%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.31%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.54%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.77%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028599	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1052471851	3300000559	Soil	SDVPDAHFIEGYAKAAREFGVEYTPIVDGLPSLFQGGAAFPGNDWISSPRGEEYLSRIPRQSHRALSRIRAFHLRVTEEVLRHLERNGPRPPEDVVSFECRSDFGS*
JGI10216J12902_1030152642	3300000956	Soil	FEGGAAFPGNDWTVNTRGEDYLSRIPAQSHRALRRIRAFHLRVTEEVLRRLEHGHKHAAEAVASFECRSRMEQSE*
JGI10216J12902_1079684152	3300000956	Soil	AEKFGVEYTPIVNGQPSLFVGGAAFPGNDWTTSPRGEDYLSRIPAASHRALARIRAFHLRTTREVLRRLEHHDRKGPDSVMSFECR*
Ga0063454_1002145742	3300004081	Soil	FIAGYVHAAAIFGVEYTPIINGAPLLFQGGAAFPGNDWTVSTRGEDYLARIPAQSHRALRRIRAFHLRVTQEVLRRLEHGDRRSAEAVASFDCR*
Ga0062593_1011463481	3300004114	Soil	NGIASLFQGGAAFPGNDWTMFPGGEDYLSRIPAQSHRALGRIRAFVLRVTREVLRRLEHDGRRSSHDVVSFDCR*
Ga0062593_1029943161	3300004114	Soil	VEYTPVVNGVPSLFKGGAAFPGNDWIASPRGEDYLARIPEQSHHALARIRAFVLRVTREVEHKLERRDDRHDNPISFDCK*
Ga0062590_1005392041	3300004157	Soil	VPDQQFIDGYVKAARIFGVEYTPIVNGIASLFQGGAAFPGNDWTMFPGGEDYLSRIPAQSHRALGRIRAFVLRVTREVLRRLEHDGRRSSHDVVSFDCR*
Ga0063356_1039858362	3300004463	Arabidopsis Thaliana Rhizosphere	QFIAGYVKAAAIFGVEYTPIVAGSPSLFQGGAAFPGNDWTVSTDGEEYLARIPSGSHKALARIRAYHLRVTREVLRKLEKPGKRPIDEVTSFACH*
Ga0062594_1007768322	3300005093	Soil	VSPHGEEYLSRIPAPSHRALRRIRAFHLRVTMEVLRKLDRDHDHDHKRPFEAVTSFDCR*
Ga0066810_100064411	3300005169	Soil	AYLSLQSDVPDAQFISGYVQAANEFGVEYTPVVNGVPSLFNGGAAFPGNDWIANPRGEEYLARIPEESHRALARIRAFVLRVTREVEHKLEHRDDRHDNPVSFDCR*
Ga0070690_1003802682	3300005330	Switchgrass Rhizosphere	GTPSLFQGGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR*
Ga0070668_1021021391	3300005347	Switchgrass Rhizosphere	PVVGGVPSLFLGGAAFPGNDWTVDTRGEDYLSRIPSQSHPALGKIRAFHLRATREVLRRLGDHGNRWHGDVVSFSCDNSQRT*
Ga0070674_1013077351	3300005356	Miscanthus Rhizosphere	GGAAFPGNDWTASPRGEEYLTRIPARSHRALAHIRAFHLRVTRDVLRRLEHDRRAFPDVASFDCH*
Ga0070705_1015076051	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GRAYLSLQSAVPDAQFISGYVRAAAKFGVEYTPIVNGVPSLFQGGAAFPGNDWTVNTRGEEYLSRIPSQSHHALRRIRAFHLRVTQEVLGRLASSDKRSAEAAVSFDCR*
Ga0070678_1001660581	3300005456	Miscanthus Rhizosphere	VPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN*
Ga0070678_1002276211	3300005456	Miscanthus Rhizosphere	GGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSSGDVASFDCR*
Ga0070662_1007128522	3300005457	Corn Rhizosphere	LQSDVTDERFIAGYVRAAAEFGVEYTPIVNGTPSLFQGGAAFPGNDWLVNTRGEEYLSRIPRQSHRELGRIRAFHLRATQEVLRKLERRNDRSHEDVVSFECR*
Ga0070664_1000624294	3300005564	Corn Rhizosphere	GAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR*
Ga0070702_1013101931	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QFIAGYTRAAAEFGVEYTPVVSGAPSLFQGGAAFPGNDWALNPRGEEYLSRIPPQSHRALARIRAFHLRATQEVLRKLEGHNKRPQEDVVSFDCR*
Ga0068861_1009634122	3300005719	Switchgrass Rhizosphere	AAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR*
Ga0068862_1019793631	3300005844	Switchgrass Rhizosphere	VSPERFIGGYVRAAAAFGVEYTPVINGAPSLFQGGAAFPGNDWTVSTRGEEYLSRIPARSHRALARIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH*
Ga0075364_104628941	3300006051	Populus Endosphere	AQFIAGYVQAAAQSGVEYTPIVNGVPSLFQGGAAFPGNDWTVDTRGEAYLSRIQLKATERSRVFVRHLQVTREVLRKLEHADGSHGNVASFECR*
Ga0075366_109849021	3300006195	Populus Endosphere	PLINGEPALFQGGAAFPGNDWTSSPNGEEYLSRIPADSHRALARIRAFHLRVTREVLRKLDRRGDRSTERWHDGDAVAFDCR*
Ga0075422_105736251	3300006196	Populus Rhizosphere	YTPIVNGQPSLFQGGAAFPGNDWTVSRQGQDYLSRIPSQSHHALARIRAFHLQVTQEVLRKLAHGNDKHAIEEVSSFQCR*
Ga0097621_1014265502	3300006237	Miscanthus Rhizosphere	GAAFPGNDWTVDTRGEEYLSRIPPPSHPALGKIRAFHLRATRDVLRRLGQHGNRWHGDVVSFSCDNSQRT*
Ga0068871_1015235011	3300006358	Miscanthus Rhizosphere	GGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR*
Ga0075421_1008791772	3300006845	Populus Rhizosphere	MEFGVDYTPIVNGKPSLFQGGAAFPGNDWTVSREDQDYLSRIPPQSHRALARIRAFHLEVTHEVLRKLAHGNDKRAIDEVTSFGCR*
Ga0075431_1002565803	3300006847	Populus Rhizosphere	MEFGVDYTPIVNGKPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQRHRALARIRAFHLEVTHEVLRKLAHGNDKRAIDEVTSFGCR*
Ga0075431_1004193942	3300006847	Populus Rhizosphere	FVGGAAFPGNDWTASPSGEEYLARIPAASHRALALIRAFHLRVTREVLHRLEDRERKLPDAAISFACR*
Ga0075420_1001034373	3300006853	Populus Rhizosphere	VEAARVAGVEYTPVVNGQPSLFQGGAAFPGNDWTVSREGQDYLSRIPQQSHSALARIRAFHLQVTEDVLRKLAHGNDKRAIDEVSSFQCR*
Ga0068865_1006625582	3300006881	Miscanthus Rhizosphere	LQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN*
Ga0079216_108425071	3300006918	Agricultural Soil	AAFPFNDWSASPRGEDYLSRIPEASHRALARIRAFHLRVTREELRRLDHHDKRPLEDVTSFECR*
Ga0074063_135147992	3300006953	Soil	FPGNDWVVSPHGEEYLARIPQQSHRALSRIRAFHLRATLEVLRRLEHEHKRPADAVVSFDCRASAW*
Ga0079218_100662354	3300007004	Agricultural Soil	FPGNDWIESPRGEEYLSRIPRESHRALSRIRAFHLHVTGEVLRSLERPDTRFRDVISFDCRPDSGS*
Ga0111539_109239151	3300009094	Populus Rhizosphere	IINGAPSLFQGGAAFPGNDWTLSTQGEEYLSRIPPQSHRALGRIRAFHLRATQDVLHKLEHHGHGSPDDVVSFECR*
Ga0114129_116514071	3300009147	Populus Rhizosphere	AARVAGVEYTPVVNGQPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLEVTQGVLRKLAHGNDKRAIDEVSSFQCR*
Ga0114129_121452501	3300009147	Populus Rhizosphere	YTPIVNGQPTLFEGGAAFPGNDWVVNPRGEDYLARIPPQSHRALARIRAFHLSATRDVLRRLEHHGDRSRDDVVSFECRQSPL*
Ga0114129_129259361	3300009147	Populus Rhizosphere	LQSFVPDAQFIAGYVKAAAIFGVEYTPIVAGSPSLFQGGAAFPGNDWTVSTDGEDYLERIPSSSHKALARIRAYHLRVTREVLRKLEKPGKRPIDEVTSFACH*
Ga0114129_134672801	3300009147	Populus Rhizosphere	AARVAGVEYTPVVNGQPSLFQGGAAFPGNDWTVSREGQDYLSRIPQQSHSALARIRAFHLQVTEDVLRKLAHGNDKRAIDEVSSFQCR*
Ga0111538_101062876	3300009156	Populus Rhizosphere	PDAQFIAGYVKAAAIFGVEYTPVVAGSPSLFQGGAAFPGNDWTVSTDGEDYLERIPSSSHKALSRIRAYHLRVTREVLRKLEKPGKRPIDEVTSFACH*
Ga0111538_112203162	3300009156	Populus Rhizosphere	FPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLEVTQGVLRKLAHGNDKRAIDEVSSFQCR*
Ga0075423_117966241	3300009162	Populus Rhizosphere	EFGVEYTPIVNGKPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR*
Ga0105242_103385911	3300009176	Miscanthus Rhizosphere	HAPGCARKPAMPTPVVGGAPSLFLGGAAFPGNDWTVDTRGEDYLSRIPSQSHPALGKIRAFHLRATRDVLRRLGQHGNRWHGDVVSFSCDNSQRT*
Ga0105248_116488312	3300009177	Switchgrass Rhizosphere	VSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR*
Ga0105248_116713502	3300009177	Switchgrass Rhizosphere	IVKGVPSLFKGGAAFPSNDWTVSTRGEEYLSRIPPQSHRALGRIRAFHLRVTREVLRSLERHDNRSHDDVVSFECQ*
Ga0105249_118434542	3300009553	Switchgrass Rhizosphere	GYVRAAAEFGVEYTPIVNGTPSLFQGGAAFPGNDWLVNTRGEEYLSRIPRQSHRELGRIRAFHLRATQEVLRKLERHNNRSHEDVVSFECR*
Ga0126382_102469811	3300010047	Tropical Forest Soil	RAAALFGVEYTPIVNGTPSLFQGGAAFPGNDWIVSPNGEEYLARIPVQSHRALARIRAFHLRVTREVLRRLDRRDNKHDADEAVSFDCR*
Ga0126306_105942973	3300010166	Serpentine Soil	AFPGNDWTVNPRGEDYLERIPVQSHRALARIRAFHLQITREVLRRLEHGSDRRALEEATSFSCR*
Ga0126372_124201122	3300010360	Tropical Forest Soil	AAQAFGVEYTPIVNGQPSLFQGGAAFPGNDWTVDTHGEAYLARIPEASHTALGRIRDYHLRVTRQVLRRLHHHGDDHVDDFACH*
Ga0126377_135099052	3300010362	Tropical Forest Soil	GVEYTPIVNGEPSLFLGGAAFPGNDWTVSPNGEEYLARIPAQSHRALARIRAFHLRVTRDVLRRLDRRDNKHDADEAVSFECR*
Ga0134125_131245142	3300010371	Terrestrial Soil	AGYVAAAARFGVEYTPVVNGAPALFTGGAAFPGNDWVVSPHGEEYLSRIPAPSHRALRRIRAFHLRVTMEVLRKLDRDHDHDHKRPFEAVTSFDCR*
Ga0134122_107346011	3300010400	Terrestrial Soil	APSLFQGGAAFPGNDWALNPRGEEYLSRIPPQSHRPLARIRAFHLRATQEVLRKLEGHNKRPQEDVVSFDCR*
Ga0134123_113421542	3300010403	Terrestrial Soil	HPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLEVTQGVLRKLAHGNDKRAIDEVSSFQCR*
Ga0134123_117862811	3300010403	Terrestrial Soil	GYVRAAAEFGVEYTPIVKGVPSLFKGGAAFPSNDWTVSTRGEEYLSRIPPQSHRALGRIRAFHLRVTREVLRSLERHDNRSHDDVVSFECQ*
Ga0105246_120754312	3300011119	Miscanthus Rhizosphere	SLQSAVPDAQFIAGYVQAAREFGVEYTPIVAGQPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIEEVSSFQCR*
Ga0157294_102030241	3300012892	Soil	VRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN*
Ga0157293_101411672	3300012898	Soil	GTPSLFQGGAAFPGNDWTASPRGEDYLLRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR*
Ga0157291_100754723	3300012902	Soil	GGAAFPGNDWTASPRGEEYLSRIPARSHRALARIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH*
Ga0157296_101324792	3300012905	Soil	VNGQPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLTHGNDKHAIDEVSSFQCR*
Ga0157298_101546841	3300012913	Soil	PSLFQGGAAFPGNDWTASPHGEDYLLRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR*
Ga0164303_113109302	3300012957	Soil	AAAEFGVEYTPIVNGTPSLFQGGAAFPGNDWTVSTHGEEYLSRIPVQSHRALARIRAFHLRVTQEVLRRLEHNGHRSSDEVVSFECR*
Ga0157307_10442382	3300013096	Soil	FPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR*
Ga0157373_113656902	3300013100	Corn Rhizosphere	YVAAAARFGVEYTPVVNGAPALFTGGAAFPGNDWVVSPHGEEYLSRIPAPSHRALRRIRAFHLRVTMEVLRKLDRDHDHDHKRPFEAVTSFDCR*
Ga0075312_11215951	3300014254	Natural And Restored Wetlands	PDAQFIAGYVQAAAEFGVEYTPVINGAPALFQGGAAFPGNDWIVNPRGEEYLSRIPPRSHRALARIRAFHLRVTQDVLRKLDDHKREQSHQVSFDCR*
Ga0157379_110034422	3300014968	Switchgrass Rhizosphere	VNGIASLFQGGAAFPGNDWTMFPGAEDYLSRIPAQSHRALGRIRAFVLRVTREVPRRLEHGGRRSSHDVVWFDCR*
Ga0132258_127694842	3300015371	Arabidopsis Rhizosphere	GNDWVVSPRGEQYLSRIPLQSHRALSRIRAFHLRVTMEVLRKLDRDHEHDHHRPFEAVTSFDCRQG*
Ga0132256_1014344601	3300015372	Arabidopsis Rhizosphere	IVGGVPSLFLGGAAFPGNDWTVDPRGEDYLSRIPPQSHRALGRIRAFHLRATQDVLRRLGDHGNRWHHDVVSFRCDTGQAD*
Ga0132256_1026265381	3300015372	Arabidopsis Rhizosphere	PTVNGAPGLFTGGAAFPGNDWVVSPHGEEYLLRIPAQSHRALSRIRAFHLRATMEVLRKLDRDRDHDHKRPFDAVTSFDCR*
Ga0132257_1005565612	3300015373	Arabidopsis Rhizosphere	LQSDVPDAQFIAGYAAAAALFGVEYTPIVGGQPSLFRGGAAFPGNDWTVNTRGEEYLSRIPAQSHRALSRIRVFVLRATLEVLRRLEQDHKRPSEAVVSFDCRSKDHES*
Ga0132255_1007197103	3300015374	Arabidopsis Rhizosphere	DGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTVSPRGEEYLMRIPARSHPALARIRAFHLRVTRDVLRRLEHDRRSFADVASFECN*
Ga0132255_1025365252	3300015374	Arabidopsis Rhizosphere	GLEYTPVVNGVPSLFEGGAAFPGNDWTVSTRGEEYLSRIPAGSHRALARIRAFHLRATQEVLRKLERRGNRPHEDVVSFQCQ*
Ga0184627_100662511	3300018079	Groundwater Sediment	VRAATEFGVEYTPIVDGLPALFQGGAAFPGNDWTLSTRGEEYLSRIPPQSHRALGRIRAFHLRATQEVLRRLEHHDKRSNDDVVSFECR
Ga0173479_106779681	3300019362	Soil	IDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPARSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0193719_103392412	3300021344	Soil	QFGLEYTPIVNGAPSLFVGGAGFPGNDWTVNARGEEYLSRIPTRSHRALARIRAFHLRVTQEVLRKLEHNDKRSIDDAMSFDCR
Ga0247790_100930861	3300022915	Soil	VPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0207682_103856391	3300025893	Miscanthus Rhizosphere	QYGRAYLSLQSAVPDQQFIDGYVRAAAAFHVESTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0207707_104986492	3300025912	Corn Rhizosphere	LSLQSAVPDAQFIAGYVAAAARFGVEYTPVVNGAPALFTGGAAFPGNDWVVSPHGEEYLSRIPAPSHRALRRIRAFHLRVTMEVLRKLDRDHDHDHKRPFEAVTSFDCR
Ga0207650_100933353	3300025925	Switchgrass Rhizosphere	TPSLFQGGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTHEVLSRLDHDRRSFADVASFDCR
Ga0207659_107861662	3300025926	Miscanthus Rhizosphere	YVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPARSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0207706_107810931	3300025933	Corn Rhizosphere	GVEYTPIVNGTPSLFQGGAAFPGNDWLVNTRGEEYLSRIPRQSHRELGRIRAFHLRATQEVLRKLERRNDRSHEDVVSFECR
Ga0207704_110101472	3300025938	Miscanthus Rhizosphere	SLQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0207679_101592021	3300025945	Corn Rhizosphere	AAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR
Ga0207679_104321452	3300025945	Corn Rhizosphere	RAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0207679_110397211	3300025945	Corn Rhizosphere	GAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0207651_100918731	3300025960	Switchgrass Rhizosphere	GTPSLFQGGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR
Ga0207640_118488361	3300025981	Corn Rhizosphere	AFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR
Ga0207708_103729211	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	AAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0207683_101825821	3300026121	Miscanthus Rhizosphere	VNVHAVQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0209382_117132971	3300027909	Populus Rhizosphere	MEFGVDYTPIVNGKPSLFQGGAAFPGNDWTVSREDQDYLSRIPPQSHRALARIRAFHLEVTHEVLRKLAHGNDKRAIDEVTSFGCR
Ga0268264_115781721	3300028381	Switchgrass Rhizosphere	VSDEQFIAGYVEAARRFGVEYTPIVNGQPSLFQGGAAFPGNDWIQNPGGQEYLSRIPAPSHRALRRIRALHLQITKDVLRTLEPGAHHGDGVRINCQ
Ga0247822_119728081	3300028592	Soil	YVRAAAAFDVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPAHSHHALARIRAFHLRVTREVLRRLEHDRRSFADVASFDCH
Ga0265309_104257881	3300028599	Sediment	QAGVEYTPIVNGVPSLFTGGAGFPGNDWNDNPAGEDYLARIPAQSHGALGEIRDTNLRITERVLRRIERNNNRPLPVGVIQKLPCR
Ga0265303_117589091	3300028600	Sediment	QQFIDGYVEAAGIAGVEYTPVVGGVPALFTGGAAFPGNDWNASPNGEDYLARIPAASHDELAKIREFHLRFTQRVLNRLENLGADQTMKLLERLPCR
Ga0307503_106581401	3300028802	Soil	AVPDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTISTHGEEYLSRIPARSHRALAHIRAFHLRVTSDVLRRLEHDRRSFADVASFDCH
Ga0247824_104083391	3300028809	Soil	DAQFIAGYVKAAAMFGVEYTPIVAGSPSLFQGGAAFPGNDWIVSTDGEEYLARIPSGSHKALARIRAYHLRVTREVLKKLEKPGKRPIDEVTSFACH
Ga0307308_106001631	3300028884	Soil	LFVGGAGFPGNDWTVNARGEEYLSRIPTRSHRALARIRAFHLRVTQEVLRKLEHNDKRSIDDAMSFDCR
Ga0299913_120773742	3300031229	Soil	VRAAAALGVECTPVINGTPSLFQGGAAFPGNDWTASTRGEEYLLRIPARSHRALARIRAFHRRVTREVLRRLAHDRRSFADVASFDCH
Ga0310888_110573692	3300031538	Soil	RAAAAFGVEYTPLINGTPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALAHIRAFHLRVTSEVLRRLEHGRRSFADVASFDCR
Ga0310887_102928773	3300031547	Soil	NGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHHALARIRAFHLRVTSDVLRRLEHDRRSFADVASFDCH
Ga0307408_1001798272	3300031548	Rhizosphere	VLDAQFIAGYVQAAMEFGVDYTPIVNGKPSLFQRGAAFPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLEVTHEVLRKFAHGNDKRAIDEVTSFGCR
Ga0307405_101230663	3300031731	Rhizosphere	VLDAQFIAGYVQAAMEFGVDYTPIVNGKPSLFQRGAAFPGNDRTVSREGQDYLSRIPPQSHRALARIRAFHLEVTHEVLRKFAHGNDKRAIDEVTSFGCR
Ga0310907_103023191	3300031847	Soil	GGAAFPGNDWTVSPRGEEYLSRIPARSHRALAHIRAFHLRVTRDVLRRLEHDRRAFPDVASFDCH
Ga0310904_102260153	3300031854	Soil	GVEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHHALARIRAFHLRVTSDVLRRLEHDRRSFADVASFDCH
Ga0310904_103164502	3300031854	Soil	AGYVQAAREFGVEYTPIVAGQPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIEEVSSFQCR
Ga0310904_111780051	3300031854	Soil	TLFQGGAAFPGNDWTVNSRVEEYLSRIPQQSHRALSRIRAFHLRVTREVLRKLEFHDKRSHDDAVSFECRGRE
Ga0310892_102145091	3300031858	Soil	GYVRAADEFGVEYTPIVNGTPTLFQGGAAFPGNDWTVNSRGEEYLSRIPQQSHRALSRIRAFHLRVTREVLRKLEFHDKRSHDDAVSFECRGRE
Ga0307406_103873461	3300031901	Rhizosphere	EFGVDYTPIVNGKPSLFQRGAAFPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLEVTHEVLRKFAHGNDKRAIDEVTSFGCR
Ga0310900_101757923	3300031908	Soil	IFGVEYTPIVAGSPSLFQGGAAFPGNDWTVSTDGEDYLERIPSSSHKALARIRAYHLRVTREVLRKLEKPGKRPIDEVTSFACH
Ga0310900_110163661	3300031908	Soil	RAAAAFGVEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALAHIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH
Ga0310900_110361441	3300031908	Soil	VEYTPVVNGVPSLFQGGAAFPGNDWILNPRGEEYLARIPAESHRALARIRAFHLKVTQEVLRKLEDHGKRSQGGPISFDCR
Ga0310891_101528771	3300031913	Soil	INGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALARIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH
Ga0310903_104261151	3300032000	Soil	INGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPARSHRALAHIRAFHLRVTSEVLRRLEHGRRSFADVASFDCR
Ga0310903_104669441	3300032000	Soil	VSREGQDYLSRIPPQSHRALARIRAFHLEVTQGVLRKLAHGNDKRAIDEVSSFQCR
Ga0310903_107836082	3300032000	Soil	AFPGNNWIASPRGEDYLERIPEQSHRALARIRAFVLQVTREVLRKLEHGNDRSHDNNAISFDCR
Ga0310902_100412921	3300032012	Soil	DAQFIAGYVKAAAIFGVEYTPIVAGSPSLFQGGAAFPGNDWTVSTDGEDYLERIPSSSHKALARIRAYHLRVTREVLRKLEKPGKRPIDEVTSFACH
Ga0310906_100415861	3300032013	Soil	DVPDEQFIAGYVRAADEFGVDYTPIVNGTPTLFQGGAAFPGNDWTVNSRGEEYLSRIPQQSHRALSRIRAFHLRVTREVLRKLEFHDKRSHDDAVSFECRGRE
Ga0310906_111084141	3300032013	Soil	IAGYVQAALESNVEYTPLVGGMPSLFLGGAAFPGNDWTVDTRGEDYLSRIPPQSHPALGKIRAFHLRATREVLRRLSHHGNRWHDDVVSFNCDTSQRT
Ga0310899_103729461	3300032017	Soil	VQAAAAFGVEYTPVVNGQPTLFTGGAAFPGNDWTVNTNGEEYLARIPSQSHRALSRIRAFHLRVTREVLRKLDDSDQRRHDGPIAFECR
Ga0310890_100122633	3300032075	Soil	MEFGVDYTPIVNGKPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQRHRALARIRAFHLEVTHEVLRKLAHGNDKRAIDEVTSFGCR
Ga0310890_105867432	3300032075	Soil	VEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALAHIRAFHLRVTSEVLRRLEHGRRSFADVASFDCR
Ga0310890_116996691	3300032075	Soil	AVPDEQFIAGYLRAAAEAGVEYTPIINGAPSLFQGGAAFPGNDWTLSTQGEEYLSRIPPQSHRALGRIRAFHLRATQDVLRNLEHHGHRSPDDVVSFECR
Ga0310895_100249282	3300032122	Soil	MEFGVDYTPIVNGKPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQRHRALARIRAFHLEVTHEVLRKLAHGNDKRAIDEVSSFQCR
Ga0310810_109346502	3300033412	Soil	EFGVEYTPIVNGKPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR
Ga0247829_104881212	3300033550	Soil	VEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPAHSHHALARIRAFHLRVTREVLRRLEHDRRSFADVASFDCH
Ga0364925_0211792_449_715	3300034147	Sediment	VRAAAAFDVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPAHSHHALARIRAFHLRVTREVLRRLEHDRRSFADVASFDCH
Ga0364927_0202920_196_513	3300034148	Sediment	VPDAQFIAGYLQAAQEFGVEYTPFVNGAPSLFQGGAAFPGNDWTANPHGEEYLSRIPSGSHQALSRIRAYHLRVTREVLRKLDHGNGHGRDNGEGRQDPIEFSCR
Ga0364929_0299610_9_305	3300034149	Sediment	VPDAQFISGYVRAANEFGVEYTPIVNGVPSLFQGGAAFPGNDWIANPRGEEYLARIPEESHRALARIRAFVLRVTREVEHRLERHDDRHDNPVSFDCR
Ga0364934_0030759_1747_1965	3300034178	Sediment	IASLFQGGAAFPGNDWTMFPGGEDYLSRIPAQSHRALGRIRAFVLRVTREVLRRLEHDGRRSSHDVVSFDCR
Ga0314788_199370_42_341	3300034666	Soil	VPDEQFIAGYLRAAAEAGVEYTPIINGAPSLFQGGAAFPGNDWTLSTQGEEYLSRIPPQSHRALRRIRAFHLRATQEVLRKLEHRGNRSHDDVVSFECR
Ga0373959_0177603_245_550	3300034820	Rhizosphere Soil	AARIFGVEYTPIVNGIASLFQGGAAFPGDDWTMFPGGEDYLSRIPAQSHRALGRIRAFVLRVNREVLRRLEHDGRRSSHDVVSFDCRWRVASRRERSIIGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062898

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences