Metagenome Family F062854

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062854
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	54 residues
Representative Sequence	RTAVPRLLDFAQDGGLDPTTRTWVFQALRDITGQSLPHDATAWRQWYATVKG
Number of Associated Samples	110
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.47 %
% of genes near scaffold ends (potentially truncated)	88.46 %
% of genes from short scaffolds (< 2000 bps)	91.54 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.769 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (10.769 % of family members)
Environment Ontology (ENVO)	Unclassified (33.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.077 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.00% β-sheet: 0.00% Coil/Unstructured: 55.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00296	Bac_luciferase	4.62
PF14534	DUF4440	3.08
PF02518	HATPase_c	3.08
PF07152	YaeQ	2.31
PF11604	CusF_Ec	1.54
PF04185	Phosphoesterase	1.54
PF02687	FtsX	1.54
PF12681	Glyoxalase_2	1.54
PF07995	GSDH	1.54
PF13360	PQQ_2	1.54
PF00696	AA_kinase	1.54
PF02472	ExbD	1.54
PF00583	Acetyltransf_1	1.54
PF13115	YtkA	1.54
PF13432	TPR_16	1.54
PF13401	AAA_22	0.77
PF01554	MatE	0.77
PF12951	PATR	0.77
PF13413	HTH_25	0.77
PF05638	T6SS_HCP	0.77
PF08592	Anthrone_oxy	0.77
PF07676	PD40	0.77
PF00069	Pkinase	0.77
PF00753	Lactamase_B	0.77
PF14714	KH_dom-like	0.77
PF12697	Abhydrolase_6	0.77
PF00291	PALP	0.77
PF16864	Dimerisation2	0.77
PF13411	MerR_1	0.77
PF01263	Aldose_epim	0.77
PF01566	Nramp	0.77
PF07715	Plug	0.77
PF02371	Transposase_20	0.77
PF03544	TonB_C	0.77
PF03712	Cu2_monoox_C	0.77
PF10978	DUF2785	0.77
PF03572	Peptidase_S41	0.77
PF13646	HEAT_2	0.77
PF04542	Sigma70_r2	0.77
PF00903	Glyoxalase	0.77
PF07691	PA14	0.77
PF08281	Sigma70_r4_2	0.77
PF07452	CHRD	0.77
PF00072	Response_reg	0.77
PF12847	Methyltransf_18	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.62
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.08
COG4681	Uncharacterized conserved protein YaeQ, suppresses RfaH defect	Function unknown [S]	2.31
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.54
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	1.54
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	1.54
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.77
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.77
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.77
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.77
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.77
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.77
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.77
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.77
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.77
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.77 %
Unclassified	root	N/A	9.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.77 %
Unclassified	root	N/A	9.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.77 %
Unclassified	root	N/A	9.23 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.54 %
Unclassified	root	N/A	9.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.85 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.54 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	36.92 %
Unclassified	root	N/A	9.23 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.31 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.77 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.77 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.92 %
Unclassified	root	N/A	9.23 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	2.31 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.77 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.77 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.92 %
Unclassified	root	N/A	9.23 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.31 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.92 %
Unclassified	root	N/A	9.23 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.31 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.77 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.92 %
Unclassified	root	N/A	9.23 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.31 %
Terriglobus saanensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis	0.77 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_4139974	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	894	Open in IMG/M
3300000956\|JGI10216J12902_103683663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300004114\|Ga0062593_102526992	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300004157\|Ga0062590_100037148	Not Available	2551	Open in IMG/M
3300004782\|Ga0062382_10608269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300005093\|Ga0062594_100799086	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300005178\|Ga0066688_10924454	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300005180\|Ga0066685_10255667	Not Available	1209	Open in IMG/M
3300005186\|Ga0066676_10096465	All Organisms → cellular organisms → Bacteria → Acidobacteria	1785	Open in IMG/M
3300005187\|Ga0066675_11047295	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300005293\|Ga0065715_10400464	All Organisms → cellular organisms → Bacteria → Acidobacteria	882	Open in IMG/M
3300005338\|Ga0068868_101459176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	639	Open in IMG/M
3300005356\|Ga0070674_101181481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300005356\|Ga0070674_101965639	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300005365\|Ga0070688_101410617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300005367\|Ga0070667_101260569	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300005440\|Ga0070705_100325962	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300005441\|Ga0070700_100118560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1770	Open in IMG/M
3300005445\|Ga0070708_101375219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	659	Open in IMG/M
3300005451\|Ga0066681_10736101	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300005457\|Ga0070662_100297631	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300005457\|Ga0070662_100568528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300005471\|Ga0070698_100675142	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300005471\|Ga0070698_101828450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300005526\|Ga0073909_10193219	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300005547\|Ga0070693_101325348	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005549\|Ga0070704_102163382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300005553\|Ga0066695_10861496	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300005558\|Ga0066698_10183739	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300005558\|Ga0066698_10921790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300005564\|Ga0070664_100656665	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300005598\|Ga0066706_10690251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300005617\|Ga0068859_100703075	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300005617\|Ga0068859_102361075	Not Available	586	Open in IMG/M
3300005719\|Ga0068861_100211360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1634	Open in IMG/M
3300005719\|Ga0068861_100543367	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300005719\|Ga0068861_101886038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300005719\|Ga0068861_102453574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300005841\|Ga0068863_100376106	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300005843\|Ga0068860_102621458	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300005844\|Ga0068862_102166121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300005888\|Ga0075289_1062557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300006032\|Ga0066696_10532788	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300006237\|Ga0097621_101222923	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006353\|Ga0075370_10413124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300006755\|Ga0079222_12083941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300006791\|Ga0066653_10197218	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1018	Open in IMG/M
3300006845\|Ga0075421_101076361	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300006847\|Ga0075431_101226853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	712	Open in IMG/M
3300006881\|Ga0068865_101016121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300006894\|Ga0079215_11166544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300006918\|Ga0079216_11582628	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009094\|Ga0111539_11710612	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300009098\|Ga0105245_10206216	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300009162\|Ga0075423_11034566	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300009553\|Ga0105249_11938426	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300010333\|Ga0134080_10678991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300010358\|Ga0126370_11244770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300010371\|Ga0134125_12403926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300010373\|Ga0134128_13004622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300010397\|Ga0134124_10503472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1172	Open in IMG/M
3300010397\|Ga0134124_11444797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300010397\|Ga0134124_12797528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300010399\|Ga0134127_11197712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300010400\|Ga0134122_12446204	Not Available	570	Open in IMG/M
3300010401\|Ga0134121_13203501	Not Available	506	Open in IMG/M
3300012211\|Ga0137377_11109847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300012350\|Ga0137372_11100734	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012944\|Ga0137410_11856016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300012951\|Ga0164300_10274291	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300012960\|Ga0164301_11345153	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012961\|Ga0164302_10891675	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300013308\|Ga0157375_12503484	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300013308\|Ga0157375_13558024	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300014166\|Ga0134079_10644316	Not Available	533	Open in IMG/M
3300014876\|Ga0180064_1062072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300014880\|Ga0180082_1079506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300015358\|Ga0134089_10295834	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300015371\|Ga0132258_10030836	All Organisms → cellular organisms → Bacteria	11978	Open in IMG/M
3300015371\|Ga0132258_10035615	All Organisms → cellular organisms → Bacteria → Acidobacteria	11202	Open in IMG/M
3300015371\|Ga0132258_10925219	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300015372\|Ga0132256_101607319	Not Available	760	Open in IMG/M
3300015373\|Ga0132257_100119699	All Organisms → cellular organisms → Bacteria	3057	Open in IMG/M
3300015373\|Ga0132257_100889481	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300015373\|Ga0132257_104425932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300017657\|Ga0134074_1192958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300018052\|Ga0184638_1085685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1155	Open in IMG/M
3300018084\|Ga0184629_10012088	All Organisms → cellular organisms → Bacteria	3384	Open in IMG/M
3300018429\|Ga0190272_12670188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300018476\|Ga0190274_10109229	All Organisms → cellular organisms → Bacteria	2225	Open in IMG/M
3300019356\|Ga0173481_10059991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1341	Open in IMG/M
3300019362\|Ga0173479_10417601	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300020059\|Ga0193745_1128523	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300021088\|Ga0210404_10659033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis	596	Open in IMG/M
3300025901\|Ga0207688_10134675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300025903\|Ga0207680_10450352	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300025917\|Ga0207660_11468211	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300025923\|Ga0207681_10036576	All Organisms → cellular organisms → Bacteria	3240	Open in IMG/M
3300025927\|Ga0207687_11080878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300025928\|Ga0207700_11699602	Not Available	557	Open in IMG/M
3300025930\|Ga0207701_10300120	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1395	Open in IMG/M
3300025930\|Ga0207701_10907488	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300025961\|Ga0207712_10332455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1257	Open in IMG/M
3300025961\|Ga0207712_11664689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300026067\|Ga0207678_10315923	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300026089\|Ga0207648_11244155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300026116\|Ga0207674_11481234	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300026118\|Ga0207675_101766292	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300026118\|Ga0207675_102223159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300026324\|Ga0209470_1260151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300026540\|Ga0209376_1264096	Not Available	725	Open in IMG/M
3300027533\|Ga0208185_1094629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300027655\|Ga0209388_1106501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300027907\|Ga0207428_10742947	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300027915\|Ga0209069_10971683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300028380\|Ga0268265_10201722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1726	Open in IMG/M
3300028381\|Ga0268264_12067617	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300028802\|Ga0307503_10561470	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300028814\|Ga0307302_10619674	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300028828\|Ga0307312_10291152	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300028884\|Ga0307308_10217649	All Organisms → cellular organisms → Bacteria → Acidobacteria	915	Open in IMG/M
3300031547\|Ga0310887_10104181	Not Available	1412	Open in IMG/M
3300031720\|Ga0307469_10112872	All Organisms → cellular organisms → Bacteria → Acidobacteria	1944	Open in IMG/M
3300031908\|Ga0310900_10042364	All Organisms → cellular organisms → Bacteria	2614	Open in IMG/M
3300031908\|Ga0310900_11262130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300031908\|Ga0310900_11617504	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300031940\|Ga0310901_10226535	All Organisms → cellular organisms → Bacteria → Acidobacteria	756	Open in IMG/M
3300032421\|Ga0310812_10527787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.31%
Host-Associated	Host-Associated	37.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.92%
Plants	Host-Associated → Plants	37.69%
Aquatic	Environmental → Aquatic	5.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.92%
Sediment	Environmental → Aquatic → Sediment	4.62%
Roots	Host-Associated → Plants → Roots	1.54%
Freshwater	Environmental → Aquatic → Freshwater	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.23%
Loam	Environmental → Terrestrial → Soil → Loam	8.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.77%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	10.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.15%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.08%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.54%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0198.00007750	2162886013	Switchgrass Rhizosphere	QSGMLSQKQRRTAVPKLLDFADEFSLDSQMRLWVFQALRDITGQSLPHDPIAWRRWYDINGAR
JGI10216J12902_1036836632	3300000956	Soil	LLDFADDGALDAETRTWVFQALRDITGQTLPHDATRWRQWFAAVKR*
Ga0062593_1025269922	3300004114	Soil	LNKEQRLSAVPKLLDYAQDVTLDPQTRTWVFQALGDITGQRLPHDASAWRDWYDHQR*
Ga0062590_1000371481	3300004157	Soil	RAVPRLLDFTTDGALDSQTRGWVFQALRDITGQTLPPDPWAWRRWYERRK*
Ga0062382_106082691	3300004782	Wetland Sediment	EQRRTAVPRLLDFAIDGTLDPETRTWVFQALRDITGKSLPPDGIAWRAWYEASRK*
Ga0062594_1007990861	3300005093	Soil	QRRQAVPRLLEYTEDYSLDPETRGWVFQALRDITGQTLPPDPSTWRLWYQKAR*
Ga0066688_109244541	3300005178	Soil	PKLLDFAEDTSLNPRTREWVFQALRDITGWTLPHDAAVWRNWYNHHPDGW*
Ga0066685_102556671	3300005180	Soil	TAVPRLLDFAEDGGLDPETRTWVFQALRDITGQSLPHDPAAWRQWYRDAFRTAERPL*
Ga0066676_100964652	3300005186	Soil	MVLDFVEDDALDAETRTWVFQALRDITGQSLPHDATLWRPWHTAVER*
Ga0066675_110472951	3300005187	Soil	SGMFSAEQRRTTIPRLLDFTRDGALDAETRTWVFQALRDITGQTLPPETTPWRNWYEASARH*
Ga0065715_104004642	3300005293	Miscanthus Rhizosphere	RLLDFAIDGALDAETHTWVFQALRDITGQSLPHDARRWREWYEATER*
Ga0068868_1014591761	3300005338	Miscanthus Rhizosphere	KQRRTAVPKLLDFADEFSLDSQMRLWVFQALRDITGQSLPHDPVAWRRWYDLNGAR*
Ga0070674_1011814812	3300005356	Miscanthus Rhizosphere	MFSAEQRRRAVPRFLDYADDPSLDDQTRGWVFQALRDITGQSLPQDAAAWRDWYQRTRRR
Ga0070674_1019656391	3300005356	Miscanthus Rhizosphere	GMFSAEQRLAAVPRLLDFAQDGGLDPETRTWVFQALRDITGQRLPQDAAAWRKWYAANYR
Ga0070688_1014106173	3300005365	Switchgrass Rhizosphere	LAQSGMFSAEQRRRAVPRFLDYADDPSLDDQTRGWVFQALRDITGQSLPQDAAAWRDWYQRTRRR*
Ga0070667_1012605692	3300005367	Switchgrass Rhizosphere	QSGMFSAAQRRTAVPRLLDFAIDGALDADTHTWVFQALRDITGQSLPHDPRRWREWYDATER*
Ga0070705_1003259621	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLLDFAGDPALDEQTRGWVFQALRDITGQNLPRDAAAWRTWYAAER*
Ga0070700_1001185601	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	RLIEYADDGALDAETRGWVFQALRDITGQSLPRETAAWREWYDRNR*
Ga0070708_1013752192	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	FSAEQRRKAIPRLLDFADDGSLDDQTHSWVFQALRDITGQSLPHDARAWRDWYSRHK*
Ga0066681_107361011	3300005451	Soil	EDGGLDPETRTWVFKALRDITGQSLPHEAVLWRRWYATAATPERE*
Ga0070662_1002976313	3300005457	Corn Rhizosphere	AQSGMLSQKQRRTAVPKLLDFADEFSLDSQMRLWVFQALRDITGQSLPHDPIAWRRWYDINGAR*
Ga0070662_1005685281	3300005457	Corn Rhizosphere	PRLIEYADDGALDAETRGWVFQALRDITGQSLPRETAAWREWYDRNR*
Ga0070698_1006751421	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RFLDYADDPSLDDQTRGWVFQALRDITGQSLPQDAAAWRDWYQRSRRR*
Ga0070698_1018284502	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LDFAGDFSLDPETRGWVFQALRDITGMTLPPDPGAWRHWYDFAGAK*
Ga0073909_101932191	3300005526	Surface Soil	ATQRRTAVPTLLSYADDGALDQQTQGWVFQALRDITGQSLPHDAHAWRDWYRSQH*
Ga0070693_1013253481	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	EQRRSAVPRLLDFAQDGAFDATTRTWVFQALRDITGQSLPQDATVWRKWYAAQR*
Ga0070704_1021633822	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LAQSGMFSAEQRRRAVPRLLDYTEDGALDVETRRWAFQALRDITGQSLPHDPVVWREWYAKFNR*
Ga0066695_108614962	3300005553	Soil	KHAMVLDFVEDDALDAETRTWVFQALRDITGQSLPHDATLWRPWHTAVER*
Ga0066698_101837392	3300005558	Soil	MFSAAQRRTAVPRLLDFAEDGGLDPDTRLWVFQALRDITGQSLPHEAVLWRRWYATAATPERE*
Ga0066698_109217902	3300005558	Soil	KLLDFAGDGALDETTRTWVFQALRDITGKSLPHEAAAWRQWYAGGGE*
Ga0070664_1006566652	3300005564	Corn Rhizosphere	ATQRRTAVPTLLQYADDGALDQQTRGWVFQALRDITGQSLPRDAHAWREWYRNQH*
Ga0066706_106902511	3300005598	Soil	FSAAQRRTAVPRLLDFAEDGGLDPDTRLWVFQALRDITGQSLPHEAVLWRRWYATAATPERE*
Ga0068859_1007030751	3300005617	Switchgrass Rhizosphere	FSAAQRRTAVPRLLDFAQDGGLEPNTRTWVFQALRDITGQSLPHDATAWRQWYATVKG*
Ga0068859_1023610752	3300005617	Switchgrass Rhizosphere	GLAQSGMFSAEQRRTAVPRLLDFAGDGALDAETRSWIFQALRDITGQSLPHDATRWRQWYASVNR*
Ga0068861_1002113601	3300005719	Switchgrass Rhizosphere	LLDFAQDGGLDPETRTWVFQALRDITGQTLPHDAVVWREWYAKFNR*
Ga0068861_1005433673	3300005719	Switchgrass Rhizosphere	AVPRFLDYADDPSLDDQTRGWVFQALRDITGQSLPQDAAAWRDWYQRTRRR*
Ga0068861_1018860382	3300005719	Switchgrass Rhizosphere	MLTETQRRTAVPRLLDFAGDFSLDPETRGWVFQALRDITGMTLPPDPGAWRHWYDFAGAR
Ga0068861_1024535742	3300005719	Switchgrass Rhizosphere	VPRLIEYADDGALDAETRGWVFQALRDITGQSLPRETAAWREWYDRNR*
Ga0068863_1003761061	3300005841	Switchgrass Rhizosphere	FSAEQRRRAVPRFLDYADDPSLDDQTRGWVFQALRDITGQSLPQDAAAWRDWYQRSRRR*
Ga0068860_1026214581	3300005843	Switchgrass Rhizosphere	TAVPRLLDFAIDGALDAETHTWVFQALRDITGQSLPHDARRWREWYEATER*
Ga0068862_1021661212	3300005844	Switchgrass Rhizosphere	LPDFADDGALDAETRTWVFQALRDITGQTLPHDATRWRQWFATAKR*
Ga0075286_10478272	3300005886	Rice Paddy Soil	GDGGLDADTQKWVFQALRDITGQTLPHDAAAWREWYRQRGPTR*
Ga0075289_10625572	3300005888	Rice Paddy Soil	YSAVPRLIDDAGDGALDEQTRGWVFQALRDITGQSLPHDASAWRDWYARQR*
Ga0066696_105327882	3300006032	Soil	SGMFSAEQRRRAIPRFLDYTEDGALDAQTRLWAFQALRGITGQNLPHDPAAWRRWYESRPLAERPD*
Ga0097621_1012229231	3300006237	Miscanthus Rhizosphere	RRRAIPRLLEYADDPSFDDQTHGWVFQALRDITGQSLPHDSAAWRDWYQRTRR*
Ga0075370_104131241	3300006353	Populus Endosphere	ARLRLTAVPRLLDFAEDTALDDQTRSWAFQALRDITGQTLPQQAAIWRDWYVRSLNR*
Ga0079222_120839412	3300006755	Agricultural Soil	VPALLGFAADGGLQGDTREWVFQALRDITGQTLPHDAVRWREWYATRPNHP*
Ga0066653_101972182	3300006791	Soil	FSQKQRRTAVPKLLDFADEFSLDSEMRLWIFQALRDITGQSLPHDPVAWRRWYNTVAAR*
Ga0075421_1010763612	3300006845	Populus Rhizosphere	TAVPTLLDYAEDGSLDAETRKWVFQALRDITGQTLPHDPSAWRQWYDSRR*
Ga0075431_1012268531	3300006847	Populus Rhizosphere	RRTAIPRLLDFADDASLDDQTRSWVFQALRDITGQSLPRDAYAWREWYQRSLRVER*
Ga0068865_1010161211	3300006881	Miscanthus Rhizosphere	ALLNFADDGSLDERTRGWVFQALRDITGQSLPHDAVAWRDWYADHRR*
Ga0079215_111665442	3300006894	Agricultural Soil	DEAQRWRAVPRLLEFTSDGALDAQTRGWVFQALRDITGQSLPPDAWAWKRWYERRK*
Ga0079216_115826281	3300006918	Agricultural Soil	LSRSQRHRAVPRLLEYAGDLSFDDQTRGWVFQALRDITGQSLPRDAAAWRKWYNSQR*
Ga0111539_117106121	3300009094	Populus Rhizosphere	LAQSGMFSAEQRRTAVPRLLDFAIDGALNADTHTWVFQALRDITGQSLPHDARLWREWYEKSSKQ*
Ga0105245_102062163	3300009098	Miscanthus Rhizosphere	PRLLDFAQDGAFDATTRTWVCQALRDITGQSLPQDATLWRKWYAAQR*
Ga0075423_110345663	3300009162	Populus Rhizosphere	PRFLDYADDPSLDDQTRGWVFQALRDITGQSLPQDAAAWRDWYQRSRRRS*
Ga0105249_119384262	3300009553	Switchgrass Rhizosphere	AVPRLLDFAIDGALDAETHTWVFQALRDITGQSLPHDARRWREWYEATER*
Ga0134080_106789911	3300010333	Grasslands Soil	RQRRTAVPRLLEFADDWSLDPETRKWVFQALRDITGQTLPHEPAAWRDWYTSLR*
Ga0126370_112447701	3300010358	Tropical Forest Soil	MFSATQRRTAVPTLLQYADDGALDQQTQGWVFQALRDITGQSLPHDAHAWRDWYRNQH*
Ga0134125_124039262	3300010371	Terrestrial Soil	PTLLDYAEDGSLDADTHKWVFQALRDITGQTLPHDAAAWRQWYDARR*
Ga0134128_130046222	3300010373	Terrestrial Soil	AAPRLIEFAEELSLERDTRNWVFQALRDITGQNLPHDAAAWRKWYESER*
Ga0134124_105034722	3300010397	Terrestrial Soil	FSATQRRTAVPTLLQYADDGALDQQTRGWVFQALRDITGQSLPRDAHAWREWYRNQH*
Ga0134124_114447971	3300010397	Terrestrial Soil	RRTAVPRLLEFADDGAFDAETQVWVFQALRDITGQNLPHDAAKWRQWYAAARR*
Ga0134124_127975281	3300010397	Terrestrial Soil	QRMTAVPALLNFADDGSLDERTRGWVFQALRDITGQSLPHDAVAWRDWYADHRR*
Ga0134127_111977122	3300010399	Terrestrial Soil	LDFTDDGTLDEQTRSWVYQALRDITGQSLPHDATAWRTWYVASSKR*
Ga0134122_124462042	3300010400	Terrestrial Soil	LLSYADDGALDQQTQGWVFQALRDITGQSLPHDAHSWREWYRSQQ*
Ga0134121_132035011	3300010401	Terrestrial Soil	SGMFTAAQRRLAVPSLIGFAEDGSVQGETREWVFQALRDITGQTLPHDAVQWRQWYARRN
Ga0137377_111098471	3300012211	Vadose Zone Soil	RLLDFAEDGGLDPETRTWVFQALRDITGQSLPHDAILWRRWYATATPERY*
Ga0137372_111007341	3300012350	Vadose Zone Soil	MVLDFVEDDALDAETRTWVFQALRDITGQSLPHDATLWRPWHTTVER*
Ga0137410_118560161	3300012944	Vadose Zone Soil	TAVPRLLDFAGDFSLDPQTRGWVFQALRDITGMTLPPDPGAWRHWYDFAGAK*
Ga0164300_102742911	3300012951	Soil	SATQRRTAVPALLSYADDGALDQQTQGWVFQALRDITGQSLPHDAHSWREWYRSQH*
Ga0164301_113451531	3300012960	Soil	QRRSAIPKLLDYADDGGMDSETHKWVFQALRDITGETLPHEGAAWRNWYRAHR*
Ga0164302_108916752	3300012961	Soil	RMRAVPRLLDFATDGALDDQTRNWVFQALRDISGETLPHDADAWRAWYRNLR*
Ga0157375_125034842	3300013308	Miscanthus Rhizosphere	AAQRRTAVPRLLDFAIDGALDADTHTWVFQALRDITGQSLPHDPRRWREWYDATER*
Ga0157375_135580242	3300013308	Miscanthus Rhizosphere	SAEQRRTAVPRLIEYAGDGALDQETQKWVFQALRDITGQSLPHDASAWRDWYRRSGR*
Ga0134079_106443161	3300014166	Grasslands Soil	AAQRRTAVPRLLDFAEDGGLDPETRTWVFQALRDITGQSLPHDPAAWRQWYRDAFRTAERPL*
Ga0180064_10620721	3300014876	Soil	RLLDFADDGALDADTRTWVFQALRDITGQTLPHDATRWRQWFATVKR*
Ga0180082_10795062	3300014880	Soil	LLDYAADFNMDPQTRGWVFQALRDITGQNLPHDPVAWRRWYESQR*
Ga0134089_102958342	3300015358	Grasslands Soil	MFSAAQRRTAVPRLLDFAEDGGLDPETRTWVFQALRDITGQSLPHEAVLWRRWYATAATPERE*
Ga0132258_100308361	3300015371	Arabidopsis Rhizosphere	LSAVPKLLDYAQDVTLDPQTRTWVFQALGDITGQRLPHDASAWRDWYDHQR*
Ga0132258_100356151	3300015371	Arabidopsis Rhizosphere	PRLLDYAGDFNLDDQTRGWVFQALRDITGQNLPKDPSAWREWYSRR*
Ga0132258_109252193	3300015371	Arabidopsis Rhizosphere	PRLLDFAQDGSIQGDTREWVFQALRDITGQTLPHDGARWREWYSTYAKR*
Ga0132256_1016073191	3300015372	Arabidopsis Rhizosphere	KQRRTALPRLLDFSEDLGLDAQTHSWVFQALRDITGQTLPPDSRIWRAWYQSK*
Ga0132257_1001196995	3300015373	Arabidopsis Rhizosphere	QAVPRLLEYTEDYSLDPETRGWVFQALRDITGQTLPPDPSTWRLWYQKAR*
Ga0132257_1008894811	3300015373	Arabidopsis Rhizosphere	QRMTAVPALLNFADDGSLDERTRGWVFQALRDITGQSLPHDAVAWRNWYAESGR*
Ga0132257_1044259321	3300015373	Arabidopsis Rhizosphere	TLLDMTEDGALDNQTRTWVFQALRDITGQTLPHDAAQWRQWYAQSSRANSSNQF*
Ga0134074_11929582	3300017657	Grasslands Soil	MLTESQRRTAVPRLLDFAGDFSLDAETRGWVFQALRDITGMTLPPDPGAWRHWYDFAGAK
Ga0184638_10856851	3300018052	Groundwater Sediment	RLLDFAEDGALDANTRTWVFQALRDITGQSLPHDATRWRQWYASVKG
Ga0184629_100120881	3300018084	Groundwater Sediment	AVPRLLEYTEDYSLDPETRGWVFQALRDITGQTLPPDPSTWRLWYQKAR
Ga0190272_126701882	3300018429	Soil	LLDFAEDSTLDDQTRSWVFQALRDITGQSLPRQPAAWRDWYVRSLRR
Ga0190274_101092292	3300018476	Soil	MLSERQRRQAVPRLFEYTEDYSLDPETRGWVFQALRDITGQTLAPDPSTWRLWFQKAR
Ga0173481_100599913	3300019356	Soil	WQAVPRLLEYAGDPSFDAQTRTWVFQALRDITGESLPPDAPAWREWHARRR
Ga0173479_104176012	3300019362	Soil	AVPRLLDFAIDGALDADTHTWVFQALRDITGQSLPHDARLWREWYEKSSKQ
Ga0193745_11285232	3300020059	Soil	AVPRLLDFAIDGALDAETHTWVFQALRDITGQSLPHDARRWREWYEATER
Ga0210404_106590332	3300021088	Soil	GLAQSGMLSAQQRRSAIPRLLDFADDGGMEPETRKWVFQALRDITGQSLPHDSQTWREWYRASIARQPQ
Ga0207688_101346751	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	AVPALLNFADDGSLDERTRGWVFQALRDITGQSLPHDAVAWRDWYADHRR
Ga0207680_104503523	3300025903	Switchgrass Rhizosphere	QSGMFSAEQRRRAIPRLLEYADDPSFDDQTHGWVFQALRDITGQSLPHDSAAWRDWYQRTRR
Ga0207660_114682112	3300025917	Corn Rhizosphere	GMFSAGQRLTAVPRLLDFAQDGGLDPETRTWVFQALRDITGQNLPRDAAAWRKWYAAER
Ga0207681_100365761	3300025923	Switchgrass Rhizosphere	RRRAVPRLLDYADDPTFDDQTRGWVFQALRDITGQSLPREAAAWRDWFNRASQR
Ga0207687_110808782	3300025927	Miscanthus Rhizosphere	MLTETQRRTAVPRLLDFAGDFSLDPETRGWVFQALRDITGMTLPPDPGAWRHWYDFVGAR
Ga0207700_116996021	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	SQSGMFSAAQRRSAVPRLLDFAGDGALDPETRNWVFQALRDITGQTLPHDAARWRQWYASSKP
Ga0207701_103001203	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVPRLLDFAQDGVLDPETRTWVFQALRDITGQSLPHDPVVWREWYAKFNR
Ga0207701_109074882	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TAVPALLRYADDGALDQQTQGWVFQALRDITGQSLPHDAHSWREWYRSQH
Ga0207670_110084881	3300025936	Switchgrass Rhizosphere	YADDGGLDAETHKWVFQALRDITGQTLPHDAIAWRNWYQSRR
Ga0207712_103324551	3300025961	Switchgrass Rhizosphere	VPSLLDFAEDPTLDDQTRSWLFQALRDITGQTLPHQAAAWRDWYLSSLRK
Ga0207712_116646891	3300025961	Switchgrass Rhizosphere	AEQRRSAVPRLLDFAQDGGLDPETRTWVFQALRDITGQTLPHDAVVWREWYAKFNR
Ga0207678_103159231	3300026067	Corn Rhizosphere	GMFSASQRMTAVPALLNFADDGSLDERTRGWVFQALRDITGQSLPHDAVAWRDWYADHRR
Ga0207648_112441551	3300026089	Miscanthus Rhizosphere	LLDFTDDGTLDEQTRSWVYQALRDITGQSLPHDATAWRTWYAASSKR
Ga0207674_114812342	3300026116	Corn Rhizosphere	LAQRRTAVPKLLEFAEDFSLDGDTRKWVFQALRDITGQTLPPDAAAWRKWFRETR
Ga0207675_1017662922	3300026118	Switchgrass Rhizosphere	MLNERQRRLAVPRLLDYAGDFSLEAETRTWVFQALRDITGQTLPPDAIAWRTWFRESR
Ga0207675_1022231592	3300026118	Switchgrass Rhizosphere	LTETQRRTAVPRLLDFAGDFSLDPETRGWVFQALRDITGMTLPPDPGAWRHWYDFAGAR
Ga0209470_12601512	3300026324	Soil	RRTAVPRLLDFAEDGGLDPETRTWVFQALRDITGQSLPHEAVLWRRWYATAATPERE
Ga0209376_12640962	3300026540	Soil	RRTAVPRLLDFAEDGGLDPETRTWVFQALRDITGQSLPHDPAAWRQWYRDAFRTAERPL
Ga0208185_10946292	3300027533	Soil	ERQRRQAVPRLLEYTEDYSLDPETRGWVFQALRDITGQTLPRQASAWRDWYVRSLRR
Ga0209388_11065012	3300027655	Vadose Zone Soil	GMFSAEQRRTAVPRLLDFAQDGALDERTRTWVFQALRDITGQSLPHDPTLWRKWYEAANR
Ga0207428_107429471	3300027907	Populus Rhizosphere	NKEQRMRAVPRLLDFAGDGALDDQTRSWVFQALRDITGANLPHDATAWRAWYSSLR
Ga0209069_109716832	3300027915	Watersheds	MLTKEQRMTAVPEILKFTDDPALDHATQTWAFQALRDITGQTLPHDAVVWRQWYRTSGAR
Ga0268265_102017221	3300028380	Switchgrass Rhizosphere	TAVPKLLDFADEFSLDSQMRLWVFQALRDITGQSLPHDPVAWRRWYDLNGAR
Ga0268264_120676171	3300028381	Switchgrass Rhizosphere	LAQSGMFSAAQRRTAVPRLLDFAIDGALDAETHTWVFQALRDITGQSLPHDARRWREWYEATER
Ga0307503_105614702	3300028802	Soil	RTAVPRLLDFAQDGGLDPTTRTWVFQALRDITGQSLPHDATAWRQWYATVKG
Ga0307302_106196742	3300028814	Soil	VPKLIDFADEFSLDSQMRLWVFQALRDITGQSLPHDPVAWRRWYDTVAAK
Ga0307312_102911522	3300028828	Soil	TAVPRLLDFAQDGGLDADTHTWVFQALRDITGQTLPHDAAAWRQWYAASGKR
Ga0307308_102176492	3300028884	Soil	AQSGMFSAAQRSTAVPRLLDFAIDGALDAETRTWVFQALRDITGQSLPHDAARWREWYKAQR
Ga0310887_101041811	3300031547	Soil	LTAVPRLLDFAGDGGLDPETRSWVFQALRDITGQSLPHDAAAWRRWWERER
Ga0307469_101128723	3300031720	Hardwood Forest Soil	IPRLLDYAGDYGLDAQTRGWVFQALRDITGQSLPHEPTAWRHWYLTAGSK
Ga0310900_100423641	3300031908	Soil	KAQRMTAVPTLIEFAGDMALDEQTRGWVFQALRDITGENLAKDPAAWRAWHERQR
Ga0310900_112621302	3300031908	Soil	AVPRLLDFADDGALDAETRTWVFQALRDITGQTLPHDATRWRQWFATAKR
Ga0310900_116175042	3300031908	Soil	RRTAVPRLIEYAGDGALDQETQKWVFQALRDITGQSLPHDASAWRDWYRRSGR
Ga0310901_102265352	3300031940	Soil	KLLEFAEDFSLDGDTRKWVFQALRDITGQTLPPDAAAWRKWFRETR
Ga0310812_105277871	3300032421	Soil	SGMFTAAQRRTAVPALIGFAEDGSVQGDTREWVFQALRDITGQTLPHDAVQWRRWYAGQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F062854

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences