Metagenome / Metatranscriptome Family F062742

Basic Information
Family ID	F062742
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	52 residues
Representative Sequence	MSDDWRIRIELGETVHADTLLGRLGLDLGSDEAQRLAKELQGHRLAVSN
Number of Associated Samples	123
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.38 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	120
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (99.231 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.538 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.308 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.97% β-sheet: 5.19% Coil/Unstructured: 68.83%
Feature Viewer

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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF02737	3HCDH_N	47.69
PF00725	3HCDH	21.54
PF02803	Thiolase_C	0.77
PF12840	HTH_20	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	69.23
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	47.69
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	47.69
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	47.69
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	47.69
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	47.69
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	47.69
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.23 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.23 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.23 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	96.92 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	96.92 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	60.77 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	1.54 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	56.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.31 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1.54 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.77 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	56.92 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.31 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1.54 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	56.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.31 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1.54 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	56.92 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	2.31 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1.54 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Unclassified	root	N/A	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	56.92 %
Streptomyces sp. HCCB10043	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. HCCB10043	2.31 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1.54 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Unclassified	root	N/A	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000044\|ARSoilOldRDRAFT_c026641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300000953\|JGI11615J12901_11539710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300001333\|A21PFW6_1077624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	886	Open in IMG/M
3300001686\|C688J18823_11051752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300002568\|C688J35102_119886330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	803	Open in IMG/M
3300004114\|Ga0062593_100087155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2142	Open in IMG/M
3300004157\|Ga0062590_101098414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300004463\|Ga0063356_100304204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1979	Open in IMG/M
3300004479\|Ga0062595_100697685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300004479\|Ga0062595_102634142	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005175\|Ga0066673_10407862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300005180\|Ga0066685_10452202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	892	Open in IMG/M
3300005335\|Ga0070666_11393871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300005337\|Ga0070682_101865125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300005338\|Ga0068868_100198733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1670	Open in IMG/M
3300005339\|Ga0070660_101156259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300005341\|Ga0070691_10040903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2191	Open in IMG/M
3300005344\|Ga0070661_101314099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300005366\|Ga0070659_101747459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300005437\|Ga0070710_11362930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300005458\|Ga0070681_10591363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1024	Open in IMG/M
3300005459\|Ga0068867_101835693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300005526\|Ga0073909_10179873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	902	Open in IMG/M
3300005535\|Ga0070684_101246459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300005544\|Ga0070686_100338633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1127	Open in IMG/M
3300005544\|Ga0070686_101625737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300005549\|Ga0070704_101695750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584	Open in IMG/M
3300005586\|Ga0066691_10167936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1268	Open in IMG/M
3300005614\|Ga0068856_101054977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300005618\|Ga0068864_101484744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	681	Open in IMG/M
3300005842\|Ga0068858_100984412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. HCCB10043	826	Open in IMG/M
3300005983\|Ga0081540_1002997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13534	Open in IMG/M
3300006572\|Ga0074051_11782740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	793	Open in IMG/M
3300006576\|Ga0074047_11912225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300006577\|Ga0074050_12051098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1153	Open in IMG/M
3300006797\|Ga0066659_10780740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	788	Open in IMG/M
3300006854\|Ga0075425_101752637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300006854\|Ga0075425_101788590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	690	Open in IMG/M
3300006871\|Ga0075434_100697249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1033	Open in IMG/M
3300006903\|Ga0075426_10536382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	871	Open in IMG/M
3300009012\|Ga0066710_104040000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549	Open in IMG/M
3300009090\|Ga0099827_11100443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	690	Open in IMG/M
3300009101\|Ga0105247_10435588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. HCCB10043	942	Open in IMG/M
3300009148\|Ga0105243_12266618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300009156\|Ga0111538_11358256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300009162\|Ga0075423_10082093	All Organisms → cellular organisms → Bacteria	3360	Open in IMG/M
3300009174\|Ga0105241_12191747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300009840\|Ga0126313_10687656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	828	Open in IMG/M
3300009840\|Ga0126313_11539688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300010040\|Ga0126308_10217907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1232	Open in IMG/M
3300010043\|Ga0126380_10928563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300010044\|Ga0126310_10244648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1206	Open in IMG/M
3300010321\|Ga0134067_10460888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300010333\|Ga0134080_10233120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	807	Open in IMG/M
3300010333\|Ga0134080_10686343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300010362\|Ga0126377_10361730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1451	Open in IMG/M
3300010397\|Ga0134124_11992192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300010400\|Ga0134122_10575854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300011994\|Ga0120157_1013037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2130	Open in IMG/M
3300012198\|Ga0137364_11026104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623	Open in IMG/M
3300012207\|Ga0137381_10184228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1807	Open in IMG/M
3300012210\|Ga0137378_11658308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300012476\|Ga0157344_1001021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1248	Open in IMG/M
3300012911\|Ga0157301_10364882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300012941\|Ga0162652_100053874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300012957\|Ga0164303_10809254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	645	Open in IMG/M
3300012960\|Ga0164301_11067263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300014056\|Ga0120125_1036136	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300014166\|Ga0134079_10088910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1160	Open in IMG/M
3300014969\|Ga0157376_13054258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300015077\|Ga0173483_10653278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300015356\|Ga0134073_10374658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300015372\|Ga0132256_100243243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1865	Open in IMG/M
3300015374\|Ga0132255_101622112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M
3300018027\|Ga0184605_10050755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1764	Open in IMG/M
3300018482\|Ga0066669_11729949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300019361\|Ga0173482_10338942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
3300019869\|Ga0193705_1021440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1406	Open in IMG/M
3300020005\|Ga0193697_1016677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1804	Open in IMG/M
3300021080\|Ga0210382_10176707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	922	Open in IMG/M
3300021080\|Ga0210382_10194544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300021344\|Ga0193719_10312104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658	Open in IMG/M
3300022534\|Ga0224452_1272775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300024178\|Ga0247694_1017010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	827	Open in IMG/M
3300024181\|Ga0247693_1004601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1646	Open in IMG/M
3300024222\|Ga0247691_1005701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	2149	Open in IMG/M
3300024232\|Ga0247664_1126872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300024325\|Ga0247678_1002346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2492	Open in IMG/M
3300025910\|Ga0207684_10671801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	882	Open in IMG/M
3300025922\|Ga0207646_10389727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1258	Open in IMG/M
3300025932\|Ga0207690_11374502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300025942\|Ga0207689_10509679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1008	Open in IMG/M
3300025945\|Ga0207679_12188061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300026035\|Ga0207703_10682709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. HCCB10043	976	Open in IMG/M
3300026078\|Ga0207702_12109533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300026277\|Ga0209350_1140924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300026324\|Ga0209470_1261500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	686	Open in IMG/M
3300026550\|Ga0209474_10707068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300027483\|Ga0207637_1010571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300027523\|Ga0208890_1074326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300027775\|Ga0209177_10422797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300028710\|Ga0307322_10083145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	810	Open in IMG/M
3300028711\|Ga0307293_10309570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300028714\|Ga0307309_10011812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1582	Open in IMG/M
3300028716\|Ga0307311_10167346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300028744\|Ga0307318_10316036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300028755\|Ga0307316_10020275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2117	Open in IMG/M
3300028755\|Ga0307316_10280531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300028768\|Ga0307280_10122401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	881	Open in IMG/M
3300028778\|Ga0307288_10044715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1509	Open in IMG/M
3300028784\|Ga0307282_10494748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	594	Open in IMG/M
3300028791\|Ga0307290_10079006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1196	Open in IMG/M
3300028799\|Ga0307284_10021228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2083	Open in IMG/M
3300028807\|Ga0307305_10033624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2347	Open in IMG/M
3300028811\|Ga0307292_10108943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1094	Open in IMG/M
3300028814\|Ga0307302_10063693	Not Available	1728	Open in IMG/M
3300028876\|Ga0307286_10081364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1125	Open in IMG/M
3300028881\|Ga0307277_10255228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300028884\|Ga0307308_10269817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	815	Open in IMG/M
3300028885\|Ga0307304_10408052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300030336\|Ga0247826_11468118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300030511\|Ga0268241_10039870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	982	Open in IMG/M
3300030514\|Ga0268253_10303871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300031892\|Ga0310893_10193676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300031901\|Ga0307406_11667224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300031944\|Ga0310884_10637019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300032003\|Ga0310897_10508836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300032828\|Ga0335080_11588593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300033475\|Ga0310811_10730156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300033551\|Ga0247830_10480840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	975	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.38%
Host-Associated	Host-Associated	24.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.31%
Plants	Host-Associated → Plants	24.62%
Aquatic	Environmental → Aquatic	3.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.23%
Freshwater	Environmental → Aquatic → Freshwater	1.54%
Sediment	Environmental → Aquatic → Sediment	1.54%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.77%
Phylloplane	Host-Associated → Plants → Phylloplane	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.77%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.15%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.77%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.31%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.77%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.08%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.08%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.31%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.31%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.77%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.77%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000044	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old	Host-Associated	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027483	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062742

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARSoilOldRDRAFT_0266412	3300000044	Arabidopsis Rhizosphere	MSDNWRIRVELPEEGHVSSLLDRLGIDLGSDEAKRLAKDLEGHRLAVSRDDDVVF
JGI11615J12901_115397102	3300000953	Soil	MSDNWRIRVELPEEGHMSSLLDRLGLDLGSDEAKRL
A21PFW6_10776242	3300001333	Permafrost	MSDNWRIRIELPEETNPGTLLDRLGLDLGSDEARRLAKELEGHRLAVSRDDDVIFVYTD
C688J18823_110517521	3300001686	Soil	MSDNWRIQIEPREAAHAESLLGRLGRDLGSDEAKRLASELK
C688J35102_1198863302	3300002568	Soil	MSDNWRIRIQPREAAHSETLLERLGLDLGSDEAKRLARELQGH
Ga0062593_1000871552	3300004114	Soil	MSDNWRIRIELGENAHADTLLGRLGLDLGSDEAKRLARELEGHRL
Ga0062590_1010984142	3300004157	Soil	MSDNWRIRIQPHEAEHGETLLERLGLDLGSDEAKRLAEEL
Ga0063356_1003042041	3300004463	Arabidopsis Thaliana Rhizosphere	MSDNWRIRVELPEEGHMSSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDDVVF
Ga0062595_1006976851	3300004479	Soil	MKDDWRIRIELPEEQHAETILGRLGLDLGSDEAKRLAEELEGRRLAVSRDGNELFV
Ga0062595_1026341421	3300004479	Soil	MSDDWRIRIELPEEEHRETFLGRLGLAEDLGSAEARQLAKELEGRRLAVSQDDNELF
Ga0066673_104078621	3300005175	Soil	MSDDWRIRIKVPEEHGEGLLDRLGLDLGSDEAKRLAKELEGRRLAVSQ
Ga0066685_104522021	3300005180	Soil	MRDDWRIRIELPEEQHAENLLGRLGLDLGTDEARRLAAELEGRRLAVSRDGNELFVYAST
Ga0070666_113938712	3300005335	Switchgrass Rhizosphere	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVSNDDDT
Ga0070682_1018651251	3300005337	Corn Rhizosphere	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDDVVFVYAESQAQAEQA
Ga0068868_1001987332	3300005338	Miscanthus Rhizosphere	MSDDWRIRIELPEEEHRETFLGRLGLAEDLGSAEARQLAKELEGRRLAVSQDDNELFVYA
Ga0070660_1011562591	3300005339	Corn Rhizosphere	MSDDWRIRVELGETAHAENLLGRLHRDLGSDESRRLADELKGRRLAVSNDEDTVFVYVDS
Ga0070691_100409032	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVSNDDDTVFVYVSSPAEAERARRIV
Ga0070661_1013140991	3300005344	Corn Rhizosphere	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVSND
Ga0070659_1017474591	3300005366	Corn Rhizosphere	MSDDWRIRIELPEEEHRETFLGRLGLAEDLGSAEARQLAKELEGRRLAVSQDDNEL
Ga0070710_113629301	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEGHRLAVSR
Ga0070681_105913631	3300005458	Corn Rhizosphere	MSDDWRIRIELPEEEHRETFLGRLGLAEDLGSAEARQLAKELEGRRLAV
Ga0068867_1018356932	3300005459	Miscanthus Rhizosphere	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVSNDDDTVFVYVSSPAEAERARRI
Ga0073909_101798731	3300005526	Surface Soil	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRL
Ga0070684_1012464591	3300005535	Corn Rhizosphere	MSDDWRIRVELGETAHAENLLGRLHRDLGSDESRRLADELKG
Ga0070686_1003386331	3300005544	Switchgrass Rhizosphere	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRLAVSND
Ga0070686_1016257372	3300005544	Switchgrass Rhizosphere	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEG
Ga0070704_1016957501	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSDDWRIRVELGETAHAETLLGRLGVGGGSDEAKRLADELKGRR
Ga0066691_101679361	3300005586	Soil	MSDDWRIRIELPEEGNVETLLGRLGLDLGSDEAKRLAGELEGRRLAVSRDGNELFV
Ga0068856_1010549771	3300005614	Corn Rhizosphere	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRLAVSNDEDTVFVYV
Ga0068864_1014847441	3300005618	Switchgrass Rhizosphere	MSDDWRIRVELGETAHAENLLGRLHRDLGSDESRRLADELKGRRLAVSN
Ga0068858_1009844122	3300005842	Switchgrass Rhizosphere	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIFVYAETQPLAE
Ga0081540_10029971	3300005983	Tabebuia Heterophylla Rhizosphere	MSDDWRIRIELGEAAHAHTLLGRLGLDLGSDEAQRLAKELQGHRLAVSNDENTVFVYVDAAAQADQ
Ga0074051_117827401	3300006572	Soil	MTDDWRIRIELPEEQHAESMLNRLGLDLGSDEAKRLAKELEGHRLAVSRDEGELFVYASTQSEA
Ga0074047_119122251	3300006576	Soil	MTDDWRIRIELAEEQHAESMLNRLGLDLGSDEAKRLAKELEG
Ga0074050_120510981	3300006577	Soil	MTDDWRIRIELPEEQHAESMLNRLGLDLGSDEAKRLAKELEG
Ga0066659_107807401	3300006797	Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGTDEAKRLAHELEGRRLAVSRDGNEL
Ga0075425_1017526371	3300006854	Populus Rhizosphere	MSDDWRIRVELGEAAHAETLLGRLGVGGGSDEAKRLADELKGRRLAVSNDED
Ga0075425_1017885902	3300006854	Populus Rhizosphere	MNDNWRIRIELGENAHAHTLLGRLGLDLGSDEAKRLA
Ga0075434_1006972492	3300006871	Populus Rhizosphere	MSDDWRIRVELGEAAHAETLLGRLGVGGGSDEAKRLADELKGRRLAVSNDEDTVFVYLDSPA
Ga0075426_105363821	3300006903	Populus Rhizosphere	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADEL
Ga0066710_1040400002	3300009012	Grasslands Soil	MSDDWRIRIEVPEEQHARTLLERLGLDLGSDDAKRLAKELEGRRLAVSQDD
Ga0099827_111004431	3300009090	Vadose Zone Soil	MSDDWRIRIELPEEGHAETLLGRLGLDLASDEAKRLARELEGHRL
Ga0105247_104355882	3300009101	Switchgrass Rhizosphere	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEELQ
Ga0105243_122666182	3300009148	Miscanthus Rhizosphere	MSDNWRIEIELPEEGHASSLFDRLGLDLGSDEAKRLA
Ga0111538_113582562	3300009156	Populus Rhizosphere	MSDNWRIRVELPEEGHMSSLLDRLGLDLGSDEAKRLAKELEGHRLAVS
Ga0075423_100820933	3300009162	Populus Rhizosphere	MSDNWRIRVELPEEGHMSSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDDVVFVYAE
Ga0105241_121917472	3300009174	Corn Rhizosphere	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIFVYAETQPLAERARGIV
Ga0126313_106876562	3300009840	Serpentine Soil	MRDDWRIRIEPREATQAETLLERLGLDLGSDEAKRLA
Ga0126313_115396882	3300009840	Serpentine Soil	MNDDWRIRIELGEAVHADTLLGRLGLDLGSDEAQRLAKELQGH
Ga0126308_102179071	3300010040	Serpentine Soil	MRDDWRIRIEPRESAHADTLVGRLGVDLGSDEARRLAEELTGRRLAVSRDDDTIF
Ga0126380_109285631	3300010043	Tropical Forest Soil	MSDDWRIRVELGETSNAEALVGRLGADLAEESKRLAAELKGRRLAVSNDEDTVFVYVDTQSE
Ga0126310_102446481	3300010044	Serpentine Soil	MRDDWRIRIEPRESAHADTLVDRLGLDLGSDEARRLAEELTGRRLAVSRDDDTIFVYADSSTQAEQ
Ga0134067_104608882	3300010321	Grasslands Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGSDDAKRL
Ga0134080_102331202	3300010333	Grasslands Soil	MSDNWRIRIQPHEAQHGESLLERLGVDLGSDEAKRLAEELQGQ
Ga0134080_106863431	3300010333	Grasslands Soil	MSDDWRIRIELPEEHHAGTLLGRFGLELTSDEGRRLAEELEGRRLA
Ga0126377_103617302	3300010362	Tropical Forest Soil	MSDDWRIRIELGEAAHADTLLGRLGLDLGSDEARRLAKELQGHRLAVSNDEDTVFVYVDAAAQAD
Ga0134124_119921921	3300010397	Terrestrial Soil	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVSNDDDTVFVYVSSPAEAARA
Ga0134122_105758541	3300010400	Terrestrial Soil	MSDNWRIEIELPEEGHANSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDD
Ga0120157_10130372	3300011994	Permafrost	MSDNWRIRIELPEETNPGTLLDRLGLDLGSDEARRLAKELEGHRLAVSRDDDVIFVYTDL
Ga0137364_110261042	3300012198	Vadose Zone Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGTDEAKRLA
Ga0137381_101842282	3300012207	Vadose Zone Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGTDEAKRLAHELEGRRLAVSRDG
Ga0137378_116583082	3300012210	Vadose Zone Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGTDEAKRLAQELKGRRLAV
Ga0157344_10010212	3300012476	Arabidopsis Rhizosphere	MSDNWRIRVELPEEGHVSSLLDRLGIDLGSDEAKRLAKDLEGHRLAVSRDDDVVFVYAES
Ga0157301_103648822	3300012911	Soil	MSDNWRIRIELGENAHADTLLGRLGLDLGSDEAKRLAR
Ga0162652_1000538742	3300012941	Soil	MNDNWRIRIELGENANADTLLGRLGFDLGSDEAKRLAAELQGRRLAVSNDEDTVFVYVDS
Ga0164303_108092541	3300012957	Soil	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVS
Ga0164301_110672631	3300012960	Soil	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADE
Ga0120125_10361361	3300014056	Permafrost	MSDNWRIRIELPEETNPGTLLDRLGLDLGSDEARRLAKEVGGHRRPGPR
Ga0134079_100889101	3300014166	Grasslands Soil	MSDDWRIRIEVPEEHGEGLLDRLGLDLGSDEAKRLAKELEGRRLAVSQDDNELF
Ga0157376_130542581	3300014969	Miscanthus Rhizosphere	MSDDWRIRVELGETAHAETLLGRLGVGGGSDEAKRLADELKGRRLAVSNDEDTVFVYVDSPTELEHA
Ga0173483_106532782	3300015077	Soil	MNDNWRIRIQPHEARHSETMLERLGLGMGSDEAKRLAEELQGHRLAVSRDDDTIFV
Ga0134073_103746581	3300015356	Grasslands Soil	VSDDWRIRIEVPEEQHAKTLLERLGLDLGSDDAKRLAKELEGRRLAVSQDDNELF
Ga0132256_1002432432	3300015372	Arabidopsis Rhizosphere	MSDDWRIRIELGETVHADTLLGRLGLDLGSDEAQRLAKELQGHRLAVSN
Ga0132255_1016221122	3300015374	Arabidopsis Rhizosphere	MSDDWRIRVELGETANAEALVGRLGVDLAEESQRLADELKGRRLAVSNDEDTVFV
Ga0184605_100507551	3300018027	Groundwater Sediment	MSDNWRIRIELPEEHHSRTLLDRLGRDLGSEEARRLAKELEGHRLG
Ga0066669_117299493	3300018482	Grasslands Soil	MSDNWRIRIKVPEEHGESLLDRLGVDLGSDEAKRLAKELQGRRLAVSQDDNELFVYA
Ga0173482_103389421	3300019361	Soil	MSDNWRIRVELGETAHAETLLGRLGVGGGSDEAKRLADELKGRRLAVSNDE
Ga0193705_10214402	3300019869	Soil	MSDNWRIRIELPEEQHSRTLLDRLGRDLGSEEARRLAKELEGHRLGVSRDDEVVFVYADSQAQVERGR
Ga0193697_10166771	3300020005	Soil	MSDNWRIRIQPHEAEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIF
Ga0210382_101767072	3300021080	Groundwater Sediment	MSDNWRIRIELPEEQHSRTLLDRLGRDLGSEEARR
Ga0210382_101945442	3300021080	Groundwater Sediment	MSDNWRIQIELPEETNPGTLLDRLGLDLGSDEARRLAKEL
Ga0193719_103121041	3300021344	Soil	MSDNWRIRIELPEEHHSRTLLERLGRDLGSEEARRLAKELEGHRLGVSRDDEVVFVYADSQAQ
Ga0224452_12727751	3300022534	Groundwater Sediment	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDDVIFVYAESQAQAERDRRMVD
Ga0247694_10170102	3300024178	Soil	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRLAVSNDEDTVFVYVD
Ga0247693_10046012	3300024181	Soil	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRLAVSNDEDTVFVYVDSPAEADR
Ga0247691_10057012	3300024222	Soil	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRLAV
Ga0247664_11268721	3300024232	Soil	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEELQGHRLA
Ga0247678_10023463	3300024325	Soil	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRL
Ga0207684_106718012	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSDNWRIRVELGESAHANTLLGRLGLDLGSDESKRLADELAGRRLAVSNDDDTVFVYVSSPAEAERARR
Ga0207646_103897272	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNDDWRIRIELPEEGQAESLLDRLGLDLGSDEARRLAQELEGRRLAVSRDGNELF
Ga0207690_113745021	3300025932	Corn Rhizosphere	MSDDWRIRIELPEEAHAGSFLGRLGLDLGSDEARRLAKELEGRRLAVSQDDNELF
Ga0207689_105096792	3300025942	Miscanthus Rhizosphere	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEGHR
Ga0207679_121880611	3300025945	Corn Rhizosphere	MSDDWRIRVELGEAAHAETLLGRLGVGGGSDEAKRLADELKGRRLAVSNDEDTVFVYLDS
Ga0207703_106827091	3300026035	Switchgrass Rhizosphere	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIFVYAETQPLAERAR
Ga0207702_121095332	3300026078	Corn Rhizosphere	MSDDWRIRVELGETAQAETLLGRLGLDLGSDEAKRLAEELQGRRLVVSNDEDTVFVYVDSPAEAGRAQ
Ga0209350_11409241	3300026277	Grasslands Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGTDDAKRLAQELEGRRLAVSRDGNELF
Ga0209470_12615001	3300026324	Soil	MSDDWRIRIELPEGHHAGTLLGRFGLELTSDEGRRLAEELEGRRLAVSQ
Ga0209474_107070681	3300026550	Soil	MRDDWRIRIELPEEAQAESLLGRLGLDLGTDEAKRLAHELEGRRLAVSRDGNELFVY
Ga0207637_10105712	3300027483	Soil	MSDDWRIRIELGEAVHADTLLGRLGLDLGSDEAQRLAKELQGHRLAVSNDEDTVFVYVDAAAQA
Ga0208890_10743262	3300027523	Soil	MTDDWRIRLDLTEEQHAESMLGRLGLDLGSDEAKRLAR
Ga0209177_104227972	3300027775	Agricultural Soil	MSDDWRIRVELGETANAEALVGRLGVDLAEESQRLADELKGRRLAVSNDEDTVFVYLDSPRAVE
Ga0307322_100831451	3300028710	Soil	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEGH
Ga0307293_103095702	3300028711	Soil	MRDDWRIRIDPAEAAHAETLLERLGLDLGSDEAKRLAGEL
Ga0307309_100118121	3300028714	Soil	MSDNWRIRIQPREPEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIF
Ga0307311_101673462	3300028716	Soil	MRDDWRIRIELPEEQHAETLLGRLGLDLGTDEAKRLAAELEGR
Ga0307318_103160362	3300028744	Soil	MTDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDDVIF
Ga0307316_100202751	3300028755	Soil	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRLAKE
Ga0307316_102805312	3300028755	Soil	MRDDWRIQIDPAEAAHAETLLERLGLDLGSDEAKRL
Ga0307280_101224012	3300028768	Soil	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIFV
Ga0307288_100447151	3300028778	Soil	MSDNWRIRIQPREAEHGETLLERLGLDLGSDEAKRLAEE
Ga0307282_104947481	3300028784	Soil	MSDNWRIEIELPEEGHASSLLDRLGLDLGSDEAKRL
Ga0307290_100790061	3300028791	Soil	MKDDWRIRIELPEEGQAESLLGRIGLDLGSDEAKRLVQELEGRRLAVSQDGNELFVY
Ga0307284_100212282	3300028799	Soil	MKDDWRIRIELPEEGQAESLLGRIGLDLGSDEAKRLVQELEGRRLAVSQD
Ga0307305_100336243	3300028807	Soil	MSDNWRIRIQPREPEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDET
Ga0307292_101089431	3300028811	Soil	MSDNWRIRIELPEEHHSRTLLERLGRDLGSEEARRLAKELEGHRLGVSRDDEVVFVYADSQAQVERAGQI
Ga0307302_100636931	3300028814	Soil	MSDNWRIRIQPHEAEHGETLLERLGLDLGSDEAKRLAEELQGHRLAVSRDDDTIFVYTETSPQAEQARG
Ga0307286_100813642	3300028876	Soil	MSDNWRIRIELPEEQHSRTLLDRLGRDLGSEEARRLAKELEGHRLGVS
Ga0307277_102552281	3300028881	Soil	MKDDWRIRIELPDEEQAESLLDSLGLDLGSDEAKRLAKDL
Ga0307308_102698171	3300028884	Soil	MSDNWRIRIQPREPEHGETLLERLGLDLGSDEAKRLAEELQG
Ga0307304_104080522	3300028885	Soil	MRDDWRIQIDPAEAAHAETLLERLGLDLGSDEAKRLVRELGGHRLAVS
Ga0247826_114681181	3300030336	Soil	MSDNWRIRIELPEEHHSRTLLDRLGRDLGSEEARRLAKELEGHRLGVSRDDEVVFVYADSQAQ
Ga0268241_100398702	3300030511	Soil	MSDDWRIRVELGETANAEALLGRLGVDLAEESRRLAEELKG
Ga0268253_103038711	3300030514	Agave	MSDDWRIRVELGEAAHAETLLGRLGVGGGSDEAKRLADELKGRRLAVSN
Ga0310893_101936762	3300031892	Soil	MSDDWRIRIELGETVHADTLLGRLGLDLGSDEAQRLAKELQGHRLAVSNDEDTVFVYVDAAAQADQTRK
Ga0307406_116672241	3300031901	Rhizosphere	MNDDWRIRIELGEAVHADTLLGRLGLDLGSDEAQRLAKELQGHRLAVSNDEDTVFVYVDSAAQADQA
Ga0310884_106370191	3300031944	Soil	MSDDWRIRIELGETVHADTLLGRLGLDLGSDEAQRLAKELQGHRLAVSNDEDTVFV
Ga0310897_105088361	3300032003	Soil	MSDDWRIRVELGETENAETLLGRLGFDLGADESKRLADELKGRRLAVSNDE
Ga0335080_115885932	3300032828	Soil	MTDDWRIRIELAEEQHAESLLDRLGLDLGSDEAKRLAQELEGHRLAVSRDGSELFVY
Ga0310811_107301562	3300033475	Soil	MSDDWRIRIELGETVHADTLLGRLGLDLGSDEAQRLAKELQ
Ga0247830_104808402	3300033551	Soil	MSDNWRIEIELPEEGHANSLLDRLGLDLGSDEAKRLAKELEGHRLAVSRDDDVIFVY

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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