Metagenome / Metatranscriptome Family F062657

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F062657
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	78 residues
Representative Sequence	MLKDITRNRLVGFWFAAVAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRSAPPPTVGEILYAANTRKEGRS
Number of Associated Samples	95
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.77 %
% of genes near scaffold ends (potentially truncated)	26.15 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (66.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (31.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.60% β-sheet: 0.00% Coil/Unstructured: 43.40%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF01988	VIT1	7.69
PF00166	Cpn10	3.08
PF00118	Cpn60_TCP1	2.31
PF00313	CSD	2.31
PF13545	HTH_Crp_2	1.54
PF06452	CBM9_1	0.77
PF02518	HATPase_c	0.77
PF03264	Cytochrom_NNT	0.77
PF00069	Pkinase	0.77
PF11329	DUF3131	0.77
PF08281	Sigma70_r4_2	0.77
PF00593	TonB_dep_Rec	0.77
PF00689	Cation_ATPase_C	0.77
PF04366	Ysc84	0.77
PF00936	BMC	0.77
PF08240	ADH_N	0.77
PF12704	MacB_PCD	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	7.69
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	7.69
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	3.08
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.08
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	2.31
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.77
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.77
COG3005	Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase	Energy production and conversion [C]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.15 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.15 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.15 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.92 %
Unclassified	root	N/A	33.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.08 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.77 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	1.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.54 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.77 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.54 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.77 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.77 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.77 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	1.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.77 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105719897	All Organisms → cellular organisms → Bacteria → Acidobacteria	2030	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105720527	Not Available	926	Open in IMG/M
3300000891\|JGI10214J12806_11483877	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300001305\|C688J14111_10086065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300001475\|JGI12361J15250_1002003	Not Available	1060	Open in IMG/M
3300001686\|C688J18823_10032173	All Organisms → cellular organisms → Bacteria	3593	Open in IMG/M
3300001686\|C688J18823_10076940	All Organisms → cellular organisms → Bacteria	2315	Open in IMG/M
3300002568\|C688J35102_118160538	Not Available	534	Open in IMG/M
3300002568\|C688J35102_120257414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300003996\|Ga0055467_10116794	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300004020\|Ga0055440_10110985	Not Available	662	Open in IMG/M
3300004081\|Ga0063454_100043042	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M
3300004081\|Ga0063454_101639111	Not Available	557	Open in IMG/M
3300004114\|Ga0062593_100872138	Not Available	906	Open in IMG/M
3300004114\|Ga0062593_102161040	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300004114\|Ga0062593_103339517	Not Available	515	Open in IMG/M
3300004153\|Ga0063455_100003960	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300004153\|Ga0063455_100168016	All Organisms → cellular organisms → Bacteria → Acidobacteria	1036	Open in IMG/M
3300004153\|Ga0063455_100513619	Not Available	751	Open in IMG/M
3300004153\|Ga0063455_100563549	Not Available	730	Open in IMG/M
3300004156\|Ga0062589_101805727	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300004479\|Ga0062595_101921573	Not Available	568	Open in IMG/M
3300005180\|Ga0066685_10760170	Not Available	660	Open in IMG/M
3300005180\|Ga0066685_10969358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300005181\|Ga0066678_10226922	All Organisms → cellular organisms → Bacteria → Acidobacteria	1201	Open in IMG/M
3300005186\|Ga0066676_10351579	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300005187\|Ga0066675_10187335	All Organisms → cellular organisms → Bacteria → Acidobacteria	1445	Open in IMG/M
3300005187\|Ga0066675_10212776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1364	Open in IMG/M
3300005295\|Ga0065707_10171929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1478	Open in IMG/M
3300005364\|Ga0070673_100798258	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300005451\|Ga0066681_10138056	All Organisms → cellular organisms → Bacteria → Acidobacteria	1425	Open in IMG/M
3300005466\|Ga0070685_10111464	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300005526\|Ga0073909_10132883	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300005529\|Ga0070741_10018979	All Organisms → cellular organisms → Bacteria	11041	Open in IMG/M
3300005529\|Ga0070741_10240117	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300005529\|Ga0070741_11484126	Not Available	560	Open in IMG/M
3300005532\|Ga0070739_10086861	All Organisms → cellular organisms → Bacteria → Acidobacteria	1815	Open in IMG/M
3300005536\|Ga0070697_100562899	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300005540\|Ga0066697_10513382	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300005544\|Ga0070686_100797266	Not Available	761	Open in IMG/M
3300005569\|Ga0066705_10535660	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300005578\|Ga0068854_100064464	All Organisms → cellular organisms → Bacteria → Acidobacteria	2662	Open in IMG/M
3300005587\|Ga0066654_10112532	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300006031\|Ga0066651_10157080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1194	Open in IMG/M
3300006046\|Ga0066652_100238979	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300006755\|Ga0079222_10408637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	949	Open in IMG/M
3300006794\|Ga0066658_10121431	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300006796\|Ga0066665_10266803	All Organisms → cellular organisms → Bacteria → Acidobacteria	1362	Open in IMG/M
3300006796\|Ga0066665_11305294	Not Available	557	Open in IMG/M
3300006854\|Ga0075425_100001854	All Organisms → cellular organisms → Bacteria	20795	Open in IMG/M
3300006871\|Ga0075434_100500488	All Organisms → cellular organisms → Bacteria → Acidobacteria	1236	Open in IMG/M
3300006903\|Ga0075426_10668872	Not Available	778	Open in IMG/M
3300009012\|Ga0066710_100171928	All Organisms → cellular organisms → Bacteria → Acidobacteria	3047	Open in IMG/M
3300009012\|Ga0066710_101166273	All Organisms → cellular organisms → Bacteria → Acidobacteria	1193	Open in IMG/M
3300009137\|Ga0066709_101673280	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300009137\|Ga0066709_103464576	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300009148\|Ga0105243_10211282	Not Available	1709	Open in IMG/M
3300009174\|Ga0105241_10040840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3503	Open in IMG/M
3300009176\|Ga0105242_10165626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1939	Open in IMG/M
3300009176\|Ga0105242_10746733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300009176\|Ga0105242_11295604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300009177\|Ga0105248_10112101	All Organisms → cellular organisms → Bacteria → Acidobacteria	3077	Open in IMG/M
3300009177\|Ga0105248_10199924	All Organisms → cellular organisms → Bacteria → Acidobacteria	2252	Open in IMG/M
3300009177\|Ga0105248_10628410	All Organisms → cellular organisms → Bacteria → Acidobacteria	1212	Open in IMG/M
3300010039\|Ga0126309_10568560	Not Available	709	Open in IMG/M
3300010320\|Ga0134109_10149807	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300010373\|Ga0134128_12755204	Not Available	542	Open in IMG/M
3300010396\|Ga0134126_11404477	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300010399\|Ga0134127_10474983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1256	Open in IMG/M
3300010400\|Ga0134122_12291130	Not Available	585	Open in IMG/M
3300012206\|Ga0137380_10606918	Not Available	956	Open in IMG/M
3300012212\|Ga0150985_102988201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3592	Open in IMG/M
3300012212\|Ga0150985_103955146	Not Available	566	Open in IMG/M
3300012357\|Ga0137384_10539651	Not Available	955	Open in IMG/M
3300012469\|Ga0150984_102092604	Not Available	916	Open in IMG/M
3300012469\|Ga0150984_115358061	Not Available	575	Open in IMG/M
3300012987\|Ga0164307_10129994	All Organisms → cellular organisms → Bacteria → Proteobacteria	1628	Open in IMG/M
3300012989\|Ga0164305_11358585	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300012989\|Ga0164305_11415605	Not Available	613	Open in IMG/M
3300014325\|Ga0163163_10296174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300014968\|Ga0157379_10627810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300014968\|Ga0157379_11958684	Not Available	578	Open in IMG/M
3300015371\|Ga0132258_10662526	All Organisms → cellular organisms → Bacteria → Acidobacteria	2626	Open in IMG/M
3300015371\|Ga0132258_11117630	All Organisms → cellular organisms → Bacteria → Acidobacteria	1992	Open in IMG/M
3300015371\|Ga0132258_12868651	All Organisms → cellular organisms → Bacteria → Acidobacteria	1199	Open in IMG/M
3300015372\|Ga0132256_100460318	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1380	Open in IMG/M
3300015372\|Ga0132256_101394029	Not Available	813	Open in IMG/M
3300015372\|Ga0132256_103095663	Not Available	559	Open in IMG/M
3300015373\|Ga0132257_102559384	Not Available	663	Open in IMG/M
3300015374\|Ga0132255_100787791	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1416	Open in IMG/M
3300015374\|Ga0132255_103501670	Not Available	668	Open in IMG/M
3300015374\|Ga0132255_104601182	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300015374\|Ga0132255_106306563	Not Available	502	Open in IMG/M
3300016319\|Ga0182033_11561264	Not Available	596	Open in IMG/M
3300017792\|Ga0163161_10854954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300018431\|Ga0066655_10832279	Not Available	628	Open in IMG/M
3300018433\|Ga0066667_11845588	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300019356\|Ga0173481_10829806	Not Available	514	Open in IMG/M
3300021445\|Ga0182009_10368217	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300023077\|Ga0247802_1044263	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300025899\|Ga0207642_10037188	All Organisms → cellular organisms → Bacteria	2096	Open in IMG/M
3300025903\|Ga0207680_10094895	All Organisms → cellular organisms → Bacteria → Acidobacteria	1905	Open in IMG/M
3300025903\|Ga0207680_10303438	Not Available	1113	Open in IMG/M
3300025927\|Ga0207687_10558670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	961	Open in IMG/M
3300025931\|Ga0207644_10263054	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300025933\|Ga0207706_10425619	All Organisms → cellular organisms → Bacteria → Acidobacteria	1150	Open in IMG/M
3300025938\|Ga0207704_10264518	Not Available	1298	Open in IMG/M
3300025945\|Ga0207679_10861728	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300025960\|Ga0207651_11800995	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300026067\|Ga0207678_10440564	Not Available	1132	Open in IMG/M
3300026088\|Ga0207641_12614272	Not Available	503	Open in IMG/M
3300026116\|Ga0207674_10125578	All Organisms → cellular organisms → Bacteria → Acidobacteria	2531	Open in IMG/M
3300026325\|Ga0209152_10076623	All Organisms → cellular organisms → Bacteria → Acidobacteria	1222	Open in IMG/M
3300026538\|Ga0209056_10329984	Not Available	1023	Open in IMG/M
3300027821\|Ga0209811_10050919	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300028802\|Ga0307503_10789880	Not Available	541	Open in IMG/M
3300030006\|Ga0299907_10875454	Not Available	670	Open in IMG/M
3300030990\|Ga0308178_1030310	Not Available	919	Open in IMG/M
3300031228\|Ga0299914_10092945	All Organisms → cellular organisms → Bacteria	2639	Open in IMG/M
3300031546\|Ga0318538_10288402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300031716\|Ga0310813_10150456	All Organisms → cellular organisms → Bacteria → Acidobacteria	1872	Open in IMG/M
3300031716\|Ga0310813_10206512	All Organisms → cellular organisms → Bacteria → Acidobacteria	1613	Open in IMG/M
3300031716\|Ga0310813_10421696	All Organisms → cellular organisms → Bacteria → Acidobacteria	1152	Open in IMG/M
3300031716\|Ga0310813_10734945	Not Available	884	Open in IMG/M
3300031744\|Ga0306918_10200001	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300031946\|Ga0310910_11214107	Not Available	585	Open in IMG/M
3300032421\|Ga0310812_10288684	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300032770\|Ga0335085_10515813	All Organisms → cellular organisms → Bacteria → Acidobacteria	1361	Open in IMG/M
3300032829\|Ga0335070_10238196	All Organisms → cellular organisms → Bacteria → Acidobacteria	1790	Open in IMG/M
3300033412\|Ga0310810_10034136	All Organisms → cellular organisms → Bacteria → Acidobacteria	6214	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.15%
Host-Associated	Host-Associated	33.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.62%
Plants	Host-Associated → Plants	33.85%
Aquatic	Environmental → Aquatic	1.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.31%
Marine	Environmental → Aquatic → Marine	1.54%
Roots	Host-Associated → Plants → Roots	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.54%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.62%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.54%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	8.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.31%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.54%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	8.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.15%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.31%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.77%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001475	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN102	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057198973	3300000364	Soil	MLKGITRNRLVGCWFAAVAVIIAAVIAMGVKVGVSTSALLLTLSLVPPGIAVVLWRDGPPPTVGEILYAANTRKEGRS*
INPhiseqgaiiFebDRAFT_1057205273	3300000364	Soil	MLSNITTRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAVLLTLSLVPPVIVLALWRTAPPPTVGEVLYAANTRQEGRS*
JGI10214J12806_114838771	3300000891	Soil	MLNTVTRNRLVGLWFAAVAVVIASVVAMGVNVGVSTTALLLTLCLVPPGIVVALWRGGPPQTVGEILYAANKGTEGRS*
C688J14111_100860651	3300001305	Soil	MLNDITRNRLIGFWFAAVSVIIASLIAIGANPGVSTTALLLTLSLVPPGIVWVLWRGAAPTTVGEILYATNTRQEGRS
JGI12361J15250_10020032	3300001475	Soil	MFNTITRTQLVGYWFAAVAVVVAAAVVMGVNPAVSTTAVLLALSAVPPGIVVALWRGGPPQTVAEILYVTNKGTEGRS*
C688J18823_100321735	3300001686	Soil	MLKNISRNQLVGFWFAGVAIIIAFAIVMGVNVGVSTTAVLLTLSLVPPGIIVALWGKAPPATIAEVLYEANARTEDRS*
C688J18823_100769403	3300001686	Soil	MFNTITRTQLVGYWFAAVAVVVAAAVVMGVNPALSTTAVLLALSAVPPGIIVALWRGGPPQTVAEILYVTNKGTEGRS*
C688J35102_1181605381	3300002568	Soil	MLNTITRTQLVGYWFAAVAVLIASAVVMGVNPDVSTTALLLGLSTVPPGIIVALWRGGPPQTIAEILYATNQGTEGRS*
C688J35102_1202574142	3300002568	Soil	MLNDITRNRLIGFWFAAVSVIIASLIAIGANPGVSTTALLLTLSLVPPGIVWVLWRGAAPTTVGEILYATNTRQEGRS*
Ga0055467_101167943	3300003996	Natural And Restored Wetlands	MLKEISRSRLVGLWFAAVAVIIASVAAMGLTVAVSTTAFLLTLSLVPPAIMLLLWPAAPSPTVADILHAASSPKDGRV*
Ga0055440_101109851	3300004020	Natural And Restored Wetlands	MLRDITRDRLVGCWFAALAVVIASVVAMGVNVGVSTTALLLTLSLVPPGIALVLWRDAPPPAVGEILYSANARTEGRS*
Ga0063454_1000430425	3300004081	Soil	MLKHLTRNQLVGFWFAGVAVIVAGAIVMGLNVGVSTTAVLLTLSLVPPAIIVALWSNAPPQTIAEVLYEANTRTDDRS*
Ga0063454_1016391112	3300004081	Soil	RTQLVGYWFAAVAVVVAAAVVMGVNPAVSTTAVLLALSAVPPGIVVALWRGGPPQTVAEILYVTNKGTEGRS*
Ga0062593_1008721382	3300004114	Soil	MLKDISRNRLVGLWFAAVAVVILSVVAMGVNVGVSTTALLLTLSLVPPGIIWALWRGGPPQTVGEILYAANEGTEGR*
Ga0062593_1021610401	3300004114	Soil	WFAAVAVVIASVVAMGVNVGVSTTALLLTLCLVPPGIVVALWRGGPPQTVGEILYAANKGTEGRS*
Ga0062593_1033395171	3300004114	Soil	MLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVNVSTSAILLTLSIVPPVIVLALWRSAPPTVGEVLYTANTRQEGRS*
Ga0063455_1000039604	3300004153	Soil	MLKNISRNQLVGFWFAGVAIIIAFAIVMGVNVGVSTTAVLLTLSLVPPGIIVALWGKAPPATIAEVLYETNARTEDRS*
Ga0063455_1001680163	3300004153	Soil	MLNDLTRNRLVGFWFTAVAVIVVSVIAMGVNVGISTGALLLALSLVPPAIVMILWRAAPPPTVAEILYAANTRDKGRS*
Ga0063455_1005136192	3300004153	Soil	MLNTITRTQLVGYWFAAVAVVIASAVVMGVNPDVGTTALLLGLSTVPPGIIVALWRGGPPQTIAEILYATNQGTEGRS*
Ga0063455_1005635491	3300004153	Soil	MLNTITRTQLVGYWFAAVAVVVAAAVVMGVNPAVSTTAVLLALSAVPPGIIVALWRGGPPQTVAEILYATNKGTDGRS*
Ga0062589_1018057271	3300004156	Soil	MLNTITRNRLVGLWFAAVAVVIASVVAMGVNVGVSTTALLLTLCLVPPGIVVALWRGGPPQTVGEILYAANKGTEGRS*
Ga0062595_1019215731	3300004479	Soil	MLNDITRNGLVGLWFAAVAVVIASVVAFGVNVGVSTTALLLSLSLVPPGITLVLWRGAASQTVGEILYSATRGMDGRS*
Ga0066685_107601701	3300005180	Soil	MLKDITRNRLVGFWFAAVAVIIASVVAMGVNVGVSTTALLLTLSLVPPGIIFVLWRAAPAPTVGEILY
Ga0066685_109693581	3300005180	Soil	DITRNRLVGGWFATVAIIVAAVIAMGVNVGVSTTALLLTLSLVPPGIILALWRAAPAPTVGEILYEANTPKEGRS*
Ga0066678_102269222	3300005181	Soil	MLKDITRNRLVGGWFATVAVIIASVIAMGVNVGVSTTALLLTLSVVPPGIILALWRVAPPPTVGEILYAANTRKEGRS*
Ga0066676_103515791	3300005186	Soil	MLKDITRNRLVGCWFAAVAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRGALRPTVGEILYAANTRKEGRS*
Ga0066675_101873354	3300005187	Soil	MLKEISRARLVGFWFAAVAVIIASLVAMGVNVAVSTTAFLLVLSLVPPAVMLLVWHRDSPPTVAEILYSANTPKEGRS*
Ga0066675_102127762	3300005187	Soil	MLKDITRNRLVGGWFATVAIIVAAVIAMGVNVGVSTTALLLTLSLVPPGIILALWRAAPAPTVGEILYGANTPKEGRS*
Ga0065707_101719292	3300005295	Switchgrass Rhizosphere	MLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVNVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYTANTRQEGRS*
Ga0070673_1007982581	3300005364	Switchgrass Rhizosphere	RADRVANHSRTIRKRVETMLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTQTIGEILYAEHTGPEGRR*
Ga0066681_101380563	3300005451	Soil	MLKDITRNRLVGFWFAAVAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRSAPPPTVGEILYAANTRKEGRS*
Ga0070685_101114642	3300005466	Switchgrass Rhizosphere	MLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0073909_101328832	3300005526	Surface Soil	MLRNIATRNRLVGCWFAAVAVIVGSMVAMGVNVNVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYTANTRQEGRS*
Ga0070741_1001897910	3300005529	Surface Soil	MVKDISRNRLVGMWFAAVAVMIAIVIVTGAKMGATTTALLLALSFVPPGIVLALWPAKPAPTIGDILYAANTRGDRS*
Ga0070741_102401172	3300005529	Surface Soil	MLNNITRNRLLGFWFAAVAVIIATVVVTGAHVGLATAALLLALSIVPPGIILVLWPAAPAQTIGDILYTGNARRDRP*
Ga0070741_114841263	3300005529	Surface Soil	DTVLKSITRNRLVGFWFVAVAVTMATIVMTGVEVGLATRALLITLSLVPPGIILALWRNTPPPTIGEILYAADKRTERRS*
Ga0070739_100868611	3300005532	Surface Soil	MLKDITRNRLVGYWFALVAVLFAIVIVMGVHVGVSTSALLFAGSLVPPGIVLALWTEGPPPTVGEIIYAADTVKGGRS*
Ga0070697_1005628991	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MVKDITRNRLVGFWFAAVAVIIATVLVTGAHVGVATTALLLALSIVPPGIILALWPAAPSPTIGEILYTANTRGDR
Ga0066697_105133821	3300005540	Soil	MLKDITRNRLVGCWFATVAIIAAAVMAMGVNVGVSTTALLLTLSLVPPGIILVLWRAAPPTTVGEILYAANTPKEGRS*
Ga0070686_1007972662	3300005544	Switchgrass Rhizosphere	MLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTQTIGEILYAEHTGPEG
Ga0066705_105356601	3300005569	Soil	MLKEISRARLVGFWFAAVAVIIASLVAMGVNVAVSTTAFLLILSLVPPAVMLLVWHRDSPPTVAEILYSANTPKEGRS*
Ga0068854_1000644645	3300005578	Corn Rhizosphere	MLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTETIGEILYAEHTGPEGRR*
Ga0066654_101125324	3300005587	Soil	MLKDITRNRLVGGWFATVAIIVAAVIAMGVNVGVSTTALLLTLSLVPPGIILALWRAAPAPTVGEILYEANTPKEGRS*
Ga0066651_101570804	3300006031	Soil	MLKDITRNRLVGLWFAAVAVIIGFVVAMGAKVGVTTTALLLTLSLVPPGIVLVLWRGAAPATVREILFAPNPPKEGRS*
Ga0066652_1002389793	3300006046	Soil	MLKALTRNRLVGFWFAAVAVMITTVVATGVNVGVSTATLLLTLSLVPPGIILALWRGAAAPTVGEILYAANPRTEGRS*
Ga0079222_104086372	3300006755	Agricultural Soil	MLNDITRNRLVALWFAAVAVVIVFVVAMGVNIGVSTSALLLTLSLVPPGIILVLWRGVPSQTVGEILYGANRGTEGR*
Ga0066658_101214312	3300006794	Soil	MLEEICRNPLVGFWCAAVAVIIASVVAMGVNVAVSTTAVLLTLSLVPPAIMWPVWHRDSPPSVAEILYSANSPKEGRS*
Ga0066665_102668032	3300006796	Soil	MLKDITRNRLVGFWFAAVAVIIASVVAIGVNVGVSTTALLLTLSLVPPGIILALWRGGPPPTVGEILYAANTQKEGRS*
Ga0066665_113052942	3300006796	Soil	MLKHITRNRLVGFWFAAIAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRGALRPTVGEILYAANTRTEGRS*
Ga0075425_1000018548	3300006854	Populus Rhizosphere	MLKDITRNRLVGFWFAAVAVVIALVVAMGVSVGVSTTALLLTLSLVPPGIILVLWRAAPSPTVAEILHAANSPKEGRS*
Ga0075434_1005004882	3300006871	Populus Rhizosphere	MVKDITRKRLAGLWFAAVAVIIATVIVTGAHVGGATTALLIALLLVPGIILALWPAAPPPTIGEILYAANMRGDRS*
Ga0075426_106688722	3300006903	Populus Rhizosphere	MLKDITRNRLVGCWFAAVAVIIATVIVMGVNVGVSTTALLLTLSLVPPGIILALWRDAPPPTVGEILYAADTRKEGRS*
Ga0066710_1001719282	3300009012	Grasslands Soil	MLKDITRNRLVGFWFAAVTVIAASVVAMGVNIGASTTAFLLTVSLVPPGIIFALWRSAPPATVGEILYAANTPKEGRS
Ga0066710_1011662732	3300009012	Grasslands Soil	MLKHITRNRLVGFWFAAIAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRSAPPPTVGEILYAANTRKEGRS
Ga0066709_1016732801	3300009137	Grasslands Soil	MLKDITRNRLVGGWFATVAVIIASVIAMGVNVGVSTTALLLTLSVVPPGIILALWRGAPRPTVGEILYAANTRKEGRS*
Ga0066709_1034645761	3300009137	Grasslands Soil	DRLAAHSGTIRRRVVTMLKDITRNRLVGCWFATVAIIAAAVMAMGVNVGVSTTALLLTLSLVPPGIILALWRAAPAPTVGEILYGANTPKEGRS*
Ga0105243_102112821	3300009148	Miscanthus Rhizosphere	MLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVNVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0105241_100408403	3300009174	Corn Rhizosphere	MLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0105242_101656261	3300009176	Miscanthus Rhizosphere	LVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0105242_107467331	3300009176	Miscanthus Rhizosphere	MLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGE
Ga0105242_112956042	3300009176	Miscanthus Rhizosphere	MLRNIATRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAVLLTLSIVPPVIVLALWRNAPPTVGEVLYVANTRQEGRS*
Ga0105248_101121013	3300009177	Switchgrass Rhizosphere	MLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYVANTRQEGRS*
Ga0105248_101999241	3300009177	Switchgrass Rhizosphere	MLRNIATRNRLVGCWFAAVAVIVGSMVAMGVNVNVSTSAILLTLSIVPPVIVLALWRSAPPTVGEVLYT
Ga0105248_106284102	3300009177	Switchgrass Rhizosphere	MRTSPRADRVANHSPTIRKRVETMLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTQTIGEILYAEHTGPEGRR*
Ga0126309_105685603	3300010039	Serpentine Soil	MLEHTTRNRLVGLWFAAVAVVVAAVIAMGVNVGASTAALLLTVSLVPPGIILVLWRGATPPTVGEILYAASTSDEGRS*
Ga0134109_101498071	3300010320	Grasslands Soil	TDSWTIRRRVETMLKDITRNRLVGFWFAAVAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRSAPPPTVGEILYAANTRKEGRS*
Ga0134128_127552041	3300010373	Terrestrial Soil	MVKNIARNRLLGLWFASVAVIIATVIVTGVHVHIATTALLLLLSIVPPGIILALWPAARPPTIGEILYAVNT
Ga0134126_114044771	3300010396	Terrestrial Soil	HSGTIQGGSTTMLNDITRNGLVGLWFAAVAVVIASVVAFGVNVGVSTTALLLSLSLVPPGITLVLWRGAASQTVGEILYSATRGMDGRS*
Ga0134127_104749831	3300010399	Terrestrial Soil	LLKDISRNQLLGYWFAAVAVIVASVFALGVNVGVSTTALLLTLSLVPPGIIMALWARATPPTIAEVLYAANTRQEGARDRS*
Ga0134122_122911301	3300010400	Terrestrial Soil	ASHSLRDDPKEGQTLLKDISRNHLLGYWFAAVAVIVASVFAFGVNVGVSTTALLLTLSLVPPGIIMALWARATPPTIAEVLYAANTRQEGARDRS*
Ga0137380_106069182	3300012206	Vadose Zone Soil	MLKEISRARLVGFWFAAVAMIIASLVAMGVNVAGSTTAFLLLLSLVPPAVMLLVWHRDSPPTVAEILYSANTPKEGRS*
Ga0150985_1029882012	3300012212	Avena Fatua Rhizosphere	MLNDITRNRLVGFWFAAVSVLIASLVAIGANPGVSTTALLLTLSLVPPGIVWVLWSGAPPTTVAEILYAANTRQERRS*
Ga0150985_1039551461	3300012212	Avena Fatua Rhizosphere	MLNDITRNRLVGFWFTAVAVIVVCVIAMGVNVGVGTAGLLLTLSLVPPGIVVFMWRDAPTQTVAEILYTANKDGRS*
Ga0137384_105396511	3300012357	Vadose Zone Soil	MLKEISRARLVGFWFAAVAIIIASVVAMGVNVAVSTTAFLLILSLVPPAVMLLVWHRDSPPTVAEILYSANTPKEGRS*
Ga0150984_1020926041	3300012469	Avena Fatua Rhizosphere	MLNDITRIRLVGFWFAAVSVIIASLIAIGANPGVSTTALLLTLSLVPPGIVWVLWRGAAPTTVGEILYATNTRQEGRS*
Ga0150984_1153580612	3300012469	Avena Fatua Rhizosphere	MFNTITRTQLVGYWFAAVAVVIAAAIVMGVNPAVSTTAVLLALSAVPPGIIVALWRGGPPQTVAEVLYATNKGTEGRS*
Ga0164307_101299941	3300012987	Soil	RRVEIMLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0164305_113585851	3300012989	Soil	MLKDVTRSRLVGGWFATVALIIASVIAIGVNVGVSTTALLLALSIVPPGIILALWRGASPPTVGDILYAANAPREGRS*
Ga0164305_114156051	3300012989	Soil	VAIMVKNIARNRLLGLWFGAVAVIIATVIVTGVHVRITTTALLLLLSIVPPGIILALWPAAPPPTIGEILYAVNTRGDRS*
Ga0163163_102961743	3300014325	Switchgrass Rhizosphere	MLRSITTRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0157379_106278103	3300014968	Switchgrass Rhizosphere	MVKNIARNRLLGLWFASVAVIIATVIVTGVHVHIATTALLLLLSIVPPGIILALWPAAPPPTIGEILYAVNTRRDRS*
Ga0157379_119586841	3300014968	Switchgrass Rhizosphere	MLRNIATRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0132258_106625265	3300015371	Arabidopsis Rhizosphere	MVKDITRKRLAGLWFAAVAVIIATVIVTGAHVGGATTALLIALLLVPGMILALWPAAPPPTIGEILYAANMRGDRS*
Ga0132258_111176305	3300015371	Arabidopsis Rhizosphere	MRNDPKEGLATMLNHITRYQIVGYWFAAVAVIIASVIVMGVNVGVGTSALLLTLSMVPPGIVLALWRGGPPPTVAEILYAADTRTERRS*
Ga0132258_128686512	3300015371	Arabidopsis Rhizosphere	VLKDITRNRLVGGWFATVAVIIASVIAMGVNVGVSTTALLLALSIVPPGIILALWRGASPPTVGDILRAANTPREGR*
Ga0132256_1004603182	3300015372	Arabidopsis Rhizosphere	MLRNITTRNRLVGCWFAVVAVIVGSMVAMGVNVNVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYTANTRQEGRS*
Ga0132256_1013940293	3300015372	Arabidopsis Rhizosphere	MVKDITRKRLAGLWFAAVAVIIATVIVTGAHVGGATTALLIALLLVPGMILALWPAAPPPTIGEILYAANTRGDRS*
Ga0132256_1030956631	3300015372	Arabidopsis Rhizosphere	QPRVMRNDPKEGLATMLNHITRYQIVGYWFAAVAVIIASVIVMGVNVGVGTSALLLTLSMVPPGIVLALWRGGPPPTVAEILYAADTRTERRS*
Ga0132257_1025593843	3300015373	Arabidopsis Rhizosphere	DPKEGLATMLNHITRYQIVGYWFAAVAVIIASVIVMGVNVGVGTSALLLTLSMVPPGIVLALWRGGPPPTVAEILYAADTRTERRS*
Ga0132255_1007877913	3300015374	Arabidopsis Rhizosphere	TRRRVEIMLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVNVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYTANTRQEGRS*
Ga0132255_1035016702	3300015374	Arabidopsis Rhizosphere	TTRRRVEIMLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS*
Ga0132255_1046011821	3300015374	Arabidopsis Rhizosphere	WFATVAVIIASVIAMGVNVGVSTTALLLALSIVPPGIILALWRGASPPTVGDILRAANTPREGR*
Ga0132255_1063065631	3300015374	Arabidopsis Rhizosphere	MVKNIARNRLLGLWFASVAVIIATVIVTGVHVHIATTALLLLLSIVPPGIILALWPAAPPPTIGEILYAVNTRRDRP*
Ga0182033_115612642	3300016319	Soil	MLKAISRTRLVGFWFAAVAVIIASVVAMGVNVAVSTTVLLLTMSLVPPAIMWLVWRGAAPPTAREILYSANTPKENRS
Ga0163161_108549542	3300017792	Switchgrass Rhizosphere	MFHGFSRSRLVGFWFAAVAVIIAIVVTMGLNVGVSTTALLLTLSLVPPGILLVLWRGAPSPTVAEILHAANSPKGSRS
Ga0066655_108322791	3300018431	Grasslands Soil	MLKDITRNRLVGGWFATVAIIVAAVIAMGVNVGVSTTALLLTLSLVPPGIILALWRAAPAPTVGEILYEANTPKEGRS
Ga0066667_118455881	3300018433	Grasslands Soil	WFAAIAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRGALRPTVGEILYAANTRTEGRS
Ga0173481_108298061	3300019356	Soil	MLNTITRNRLVGLWFAAVAVVIASVVAMGVNVGVSTTALLLTLCLVPPGIVVALWRGGPPQTVGEILYAANKGTEGRS
Ga0182009_103682172	3300021445	Soil	MLNDITRNALLALWFATVAVVIASVVALGVNVGVSTTALLFALSLVPPGIMLVLWRGAAPQTVGEILYPATRGIEGRS
Ga0247802_10442631	3300023077	Soil	MLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS
Ga0207642_100371882	3300025899	Miscanthus Rhizosphere	MLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS
Ga0207680_100948955	3300025903	Switchgrass Rhizosphere	MLNDITRNGLVGLWFAAVAVVIASVVAFGVNVGVSTTALLLSLSLVPPGITLVLWRGAASQTVGEILYSATRGMDGRS
Ga0207680_103034381	3300025903	Switchgrass Rhizosphere	THTKTTRRRVEIMLRNITTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS
Ga0207687_105586702	3300025927	Miscanthus Rhizosphere	MLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTQTIG
Ga0207644_102630543	3300025931	Switchgrass Rhizosphere	MLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTETIGEILYAEHTGPEGRR
Ga0207706_104256192	3300025933	Corn Rhizosphere	MLNVTRNRLVGVWFAAVAITIASVVATGVNVGISTTALLLTLCAVPPGIIFVLWRGASTQTIGEILYAEHTGPEGRR
Ga0207704_102645183	3300025938	Miscanthus Rhizosphere	ACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS
Ga0207679_108617282	3300025945	Corn Rhizosphere	MLNTITRNRLVGLWFAAVAVVIASVVAMGVNVGVSTTALLLTLCLVPPGIVVALWRGGPPQTVGEILY
Ga0207651_118009951	3300025960	Switchgrass Rhizosphere	ITRNGLVGLWFAAVAVVIASVVAFGVNVGVSTTALLLSLSLVPPGITLVLWRGAASQTVGEILYSATRGMDGRS
Ga0207678_104405642	3300026067	Corn Rhizosphere	TTRNRLVACWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS
Ga0207641_126142721	3300026088	Switchgrass Rhizosphere	MVKNIARNRLLGLWFASVAVIIATVIVTGVHVHIATTALLLLLSIVPPGIILALWPAAPPPTIGEILYAVNTRRDRS
Ga0207674_101255781	3300026116	Corn Rhizosphere	MLNTITRNRLVGLWFAAVAVVIASVVAMGVNVGVSTTALLLTLCLVPPGIVVALWRGGPPQTVGEIL
Ga0209152_100766232	3300026325	Soil	MLEEICRNPLVGFWCAAVAVIIASVVAMGVNVAVSTTAVLLTLSLVPPAIMWPVWHRDSPPSVAEILYWANSPKEGRS
Ga0209056_103299842	3300026538	Soil	MLKHITRNRLVGFWFAAIAVIVASVVAMGVNVGVSTTALLLTLSLVPPGIILALWRGALRPTVGEILYAANTRTEGRS
Ga0209811_100509192	3300027821	Surface Soil	MLRNITTRNRLVGCWFAVVAVIVGSMVTMGVNVNVSTSAILLTLSLVPPVIVLALWRSAPPTVGEVLYTANTRQEGRS
Ga0307503_107898802	3300028802	Soil	MLRNITTRNRLVGCWFAAVAVIVGSMVAMGVNVGVSTSAILLTLSFVPPVIVLALWRSAPPTVGEVLYRANTRQEGRS
Ga0299907_108754542	3300030006	Soil	MLKEISCNRLVGFCFAAVAIIIASVVAMGENVAVSTTALLLTMSQGPPAIMLLVWRGAPQPTVGEILYSANTPKEGRS
Ga0308178_10303102	3300030990	Soil	MLKNISRNQLVGFWFAGVAIIIASVIVMGVNVGVSTTAVLLTLSLVPPGIIVALWGKAPPATIAEVLYEANTRTEDRS
Ga0299914_100929452	3300031228	Soil	MLKGITRNRLVGLWFAAVALMIATVVAMGVNVGVSTAALLLTLSLVPPGTLLALWRGSPPPTIGEILYAANRRTEDRS
Ga0318538_102884023	3300031546	Soil	MLKELSRTRLVGFWFAAVAVIIASVVAMGVNVAVSTTALLLTLSLVPAAIILLLWHGAAPLTARDIMYSANTPKKDRS
Ga0310813_101504563	3300031716	Soil	MLNDITRNGLLALWFATVAVVIASVVALGVNVGVSTTALLFALSLVPPGIMLVLWRGAAPQTVGEILYPATRGIEGRS
Ga0310813_102065124	3300031716	Soil	MVKDITRKRLAGLWAAAVAVIIATVIVTGAHVGGATTALLIALLLVPGIILALWPAAPPPTIGEILYAANMRGDRS
Ga0310813_104216962	3300031716	Soil	VLKDITRNRLVGGWFATVAVIIASAIAMGVNVGVSTTALLLALSIVPPGIILALWRGASPPTVGDILYAANTPREDRS
Ga0310813_107349452	3300031716	Soil	MVKDITRNRLVGFWFAAVAVLIATVIVTGVHVGAATTALLLALSLVPPGIILALWPAAPPTTIGEVLYAANTRGDRS
Ga0306918_102000011	3300031744	Soil	MLKEISRNRLVGFWFAAVAVIVASVVAMGVNVAVSTTVLLLTMSLVPPAIMWLVWRGAAPPTAREILYSANTPKEGRS
Ga0310910_112141071	3300031946	Soil	MLKGLSRNRLVGFWFAAVAVIIASVVAMGVNVAVSTTVLLLTMSLVPPAIMWLVWRGAAPPTAREILYSANTPKEGRS
Ga0310812_102886842	3300032421	Soil	MVKDIITRNRLVGFWFAAVAVIIATVIVTGAHVGGATTALLIALLLVPGMILALWPAAPPPTIGEILYAANMRGDRS
Ga0335085_105158131	3300032770	Soil	MVNDITRNRLVGFWFAAVAVVIATIIVTGTHVGAATTTLLLALSIVPPGVILALWPAAPPPTIGEILYSANTRGDRS
Ga0335070_102381963	3300032829	Soil	MWKNVTRNRLVGFWFAAVAVLIAIVVVMGVNVGVSTTALLLTLSLVPPGIVLALWRGTPSPTVAEILHTANSSKDRA
Ga0310810_100341363	3300033412	Soil	MVKDITRKRLAGLWFAAVAVIIATVIVTGAHVGGATTALLIALLLVPGMILALWPAAPPPTIGEILYAANMRGDRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062657

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences