Metagenome Family F062587

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062587
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	60 residues
Representative Sequence	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR
Number of Associated Samples	108
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.54 %
% of genes near scaffold ends (potentially truncated)	96.92 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.462 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.769 % of family members)
Environment Ontology (ENVO)	Unclassified (40.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.154 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.48% β-sheet: 0.00% Coil/Unstructured: 65.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00083	Sugar_tr	30.00
PF01979	Amidohydro_1	3.85
PF16277	DUF4926	2.31
PF07690	MFS_1	2.31
PF04365	BrnT_toxin	1.54
PF14384	BrnA_antitoxin	1.54
PF03239	FTR1	1.54
PF01833	TIG	1.54
PF00133	tRNA-synt_1	0.77
PF03144	GTP_EFTU_D2	0.77
PF13414	TPR_11	0.77
PF00930	DPPIV_N	0.77
PF00082	Peptidase_S8	0.77
PF12681	Glyoxalase_2	0.77
PF13599	Pentapeptide_4	0.77
PF13147	Obsolete Pfam Family	0.77
PF02416	TatA_B_E	0.77
PF00009	GTP_EFTU	0.77
PF13193	AMP-binding_C	0.77
PF10576	EndIII_4Fe-2S	0.77
PF00326	Peptidase_S9	0.77
PF05685	Uma2	0.77
PF00115	COX1	0.77
PF13784	Fic_N	0.77
PF04389	Peptidase_M28	0.77
PF13620	CarboxypepD_reg	0.77
PF00805	Pentapeptide	0.77
PF08719	NADAR	0.77
PF13493	DUF4118	0.77
PF12802	MarR_2	0.77
PF13637	Ank_4	0.77
PF00501	AMP-binding	0.77
PF11146	DUF2905	0.77
PF00730	HhH-GPD	0.77
PF02604	PhdYeFM_antitox	0.77
PF00106	adh_short	0.77
PF03401	TctC	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	1.54
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.77
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.77
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.77
COG3236	N-glycosidase YbiA/RibX (riboflavin biosynthesis, damage control), NADAR superfamily	Defense mechanisms [V]	0.77
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.77
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.77
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.77
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.77
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.77
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.77
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.77
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.77
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.77
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.77
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.77
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.77
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.77
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.46 %
Unclassified	root	N/A	1.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.46 %
Unclassified	root	N/A	1.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.46 %
Unclassified	root	N/A	1.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	35.38 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.31 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.54 %
Unclassified	root	N/A	1.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.69 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	5.38 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2.31 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.54 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.54 %
Unclassified	root	N/A	1.54 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.69 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.38 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	2.31 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.54 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	1.54 %
Unclassified	root	N/A	1.54 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.77 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.69 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	4.62 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	2.31 %
unclassified Candidatus Poribacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria	1.54 %
Unclassified	root	N/A	1.54 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.77 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.69 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	4.62 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.54 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1.54 %
Unclassified	root	N/A	1.54 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.69 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	4.62 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.54 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1.54 %
Unclassified	root	N/A	1.54 %
Cyanothecaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae	0.77 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.69 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	4.62 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.54 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1.54 %
Unclassified	root	N/A	1.54 %
Cyanothece	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	0.77 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02HBYHV	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300000956\|JGI10216J12902_102021955	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300003267\|soilL1_10050927	All Organisms → cellular organisms → Bacteria → Acidobacteria	2788	Open in IMG/M
3300003319\|soilL2_10053885	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300004157\|Ga0062590_101110067	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300004463\|Ga0063356_100675511	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300004480\|Ga0062592_100124601	All Organisms → cellular organisms → Bacteria → Acidobacteria	1663	Open in IMG/M
3300004480\|Ga0062592_100839749	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300004480\|Ga0062592_101216033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	705	Open in IMG/M
3300004480\|Ga0062592_102669934	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300004780\|Ga0062378_10003218	All Organisms → cellular organisms → Bacteria	2374	Open in IMG/M
3300004782\|Ga0062382_10041587	Not Available	1645	Open in IMG/M
3300005167\|Ga0066672_10799548	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300005184\|Ga0066671_10730849	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005290\|Ga0065712_10484598	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005294\|Ga0065705_11164331	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005333\|Ga0070677_10859360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300005338\|Ga0068868_100391769	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005338\|Ga0068868_100566472	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005344\|Ga0070661_100827482	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300005364\|Ga0070673_100137061	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2061	Open in IMG/M
3300005440\|Ga0070705_100405785	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300005445\|Ga0070708_101630423	Not Available	600	Open in IMG/M
3300005445\|Ga0070708_102068112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300005450\|Ga0066682_10405101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	873	Open in IMG/M
3300005459\|Ga0068867_102324090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300005468\|Ga0070707_101409148	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005468\|Ga0070707_102071366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300005471\|Ga0070698_100131848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2454	Open in IMG/M
3300005518\|Ga0070699_100556343	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300005545\|Ga0070695_101162445	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005546\|Ga0070696_100336306	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300005547\|Ga0070693_100157940	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300005547\|Ga0070693_100384705	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005559\|Ga0066700_10309301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1115	Open in IMG/M
3300005561\|Ga0066699_10014432	All Organisms → cellular organisms → Bacteria	4107	Open in IMG/M
3300005563\|Ga0068855_100920340	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300005578\|Ga0068854_102147312	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300005615\|Ga0070702_101050849	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005617\|Ga0068859_100119258	All Organisms → cellular organisms → Bacteria	2704	Open in IMG/M
3300005618\|Ga0068864_101953894	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005834\|Ga0068851_10498640	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300005842\|Ga0068858_101085817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	785	Open in IMG/M
3300005844\|Ga0068862_100282044	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300005944\|Ga0066788_10069048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300006800\|Ga0066660_10024680	All Organisms → cellular organisms → Bacteria	3587	Open in IMG/M
3300006806\|Ga0079220_10082122	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300006954\|Ga0079219_10332965	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300007004\|Ga0079218_11094185	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300009088\|Ga0099830_10277019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1334	Open in IMG/M
3300009137\|Ga0066709_100463809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1775	Open in IMG/M
3300009156\|Ga0111538_11613272	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300009156\|Ga0111538_13307786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300009545\|Ga0105237_11796999	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300010039\|Ga0126309_11146006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	531	Open in IMG/M
3300010043\|Ga0126380_10159544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1457	Open in IMG/M
3300010044\|Ga0126310_11191766	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300010045\|Ga0126311_10055259	All Organisms → cellular organisms → Bacteria	2569	Open in IMG/M
3300010045\|Ga0126311_10602326	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300010362\|Ga0126377_13123378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300010373\|Ga0134128_12298538	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300010373\|Ga0134128_12889230	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300010375\|Ga0105239_12337590	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	622	Open in IMG/M
3300010375\|Ga0105239_13609021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300010397\|Ga0134124_10368526	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300010397\|Ga0134124_11232991	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300010397\|Ga0134124_12200279	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300010399\|Ga0134127_13263541	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300010400\|Ga0134122_10642929	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	987	Open in IMG/M
3300010400\|Ga0134122_11386803	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	716	Open in IMG/M
3300010401\|Ga0134121_12024242	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300011431\|Ga0137438_1157439	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	697	Open in IMG/M
3300012201\|Ga0137365_10828521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300012202\|Ga0137363_10050919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2968	Open in IMG/M
3300012209\|Ga0137379_10994672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300012354\|Ga0137366_11010865	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300012532\|Ga0137373_10092737	All Organisms → cellular organisms → Bacteria → Acidobacteria	2661	Open in IMG/M
3300012532\|Ga0137373_10423563	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300012582\|Ga0137358_10402177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	926	Open in IMG/M
3300012922\|Ga0137394_10796836	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300012951\|Ga0164300_10912001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300013297\|Ga0157378_12086198	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300013307\|Ga0157372_12680482	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300014268\|Ga0075309_1066463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300014325\|Ga0163163_10059607	All Organisms → cellular organisms → Bacteria	3776	Open in IMG/M
3300014745\|Ga0157377_11764779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300015371\|Ga0132258_10101937	All Organisms → cellular organisms → Bacteria	6766	Open in IMG/M
3300015371\|Ga0132258_13869656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1018	Open in IMG/M
3300015373\|Ga0132257_102769844	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	639	Open in IMG/M
3300015373\|Ga0132257_103563358	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300017695\|Ga0180121_10289398	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300018073\|Ga0184624_10118160	All Organisms → cellular organisms → Bacteria → Acidobacteria	1147	Open in IMG/M
3300018076\|Ga0184609_10178550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300018429\|Ga0190272_12334752	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	578	Open in IMG/M
3300018429\|Ga0190272_12480378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300018465\|Ga0190269_11565502	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300020003\|Ga0193739_1056936	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300021377\|Ga0213874_10281537	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300024178\|Ga0247694_1032722	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300025321\|Ga0207656_10429917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	666	Open in IMG/M
3300025908\|Ga0207643_10373398	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300025910\|Ga0207684_10179932	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300025911\|Ga0207654_10856783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300025912\|Ga0207707_10384067	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300025923\|Ga0207681_10618549	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	896	Open in IMG/M
3300025923\|Ga0207681_11375006	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300025925\|Ga0207650_10483549	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	1033	Open in IMG/M
3300025925\|Ga0207650_11019966	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300025927\|Ga0207687_10767867	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300025932\|Ga0207690_10528395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300025932\|Ga0207690_10832399	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300025939\|Ga0207665_10146946	All Organisms → cellular organisms → Bacteria → Acidobacteria	1685	Open in IMG/M
3300025942\|Ga0207689_11246662	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300025960\|Ga0207651_12000054	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300026023\|Ga0207677_10774802	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300026142\|Ga0207698_12304761	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300026215\|Ga0209849_1064915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300026323\|Ga0209472_1201122	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300027775\|Ga0209177_10133437	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300027817\|Ga0209112_10215412	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300027840\|Ga0209683_10360673	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300027886\|Ga0209486_10597664	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300028380\|Ga0268265_10357813	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300028381\|Ga0268264_10404019	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300028381\|Ga0268264_12289547	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031538\|Ga0310888_10288649	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300031576\|Ga0247727_10241710	All Organisms → cellular organisms → Bacteria → Acidobacteria	1594	Open in IMG/M
3300031901\|Ga0307406_10455106	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300032005\|Ga0307411_11730536	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300033412\|Ga0310810_10216128	All Organisms → cellular organisms → Bacteria → Acidobacteria	2148	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.08%
Host-Associated	Host-Associated	36.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.69%
Plants	Host-Associated → Plants	36.92%
Aquatic	Environmental → Aquatic	5.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.92%
Freshwater	Environmental → Aquatic → Freshwater	3.08%
Sediment	Environmental → Aquatic → Sediment	2.31%
Roots	Host-Associated → Plants → Roots	1.54%
Cave	Environmental → Terrestrial → Cave	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.62%
Loam	Environmental → Terrestrial → Soil → Loam	12.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.23%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.31%
Ice	Environmental → Aquatic → Freshwater → Ice	0.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.08%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.08%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.54%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.77%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.77%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.77%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.77%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004780	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_06325570	2170459010	Grass Soil	KRHFYEYERFEAVRAEEMMEARVDFVFASLLKDKDFLALTSKADGLLKMNNGVAPRMTAH
JGI10216J12902_1020219552	3300000956	Soil	RHFFRYERYQSVRAKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPTRDMKGMQQQR
soilL1_100509275	3300003267	Sugarcane Root And Bulk Soil	RHFFRYERYQAVRAKEMMEARVDAVFDSIRMDKEFLALTARADGKLPIPMVRTAAGSEN*
soilL2_100538852	3300003319	Sugarcane Root And Bulk Soil	RRHFFQYERYHAVRAKEMMEARVDAVFDSIRYDSGFLALTSGADGKLQMPMRGMPTMQNR
Ga0062590_1011100671	3300004157	Soil	LLQRHFFHYERYQAVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLQMPMRNMTGSSNRD*
Ga0063356_1006755112	3300004463	Arabidopsis Thaliana Rhizosphere	ALLRRHFFQYERYEAVRAKEMMEARVDAVFDSIRYDSSFLALTSGADGKLQMPMRSMPGMQNR*
Ga0062592_1001246013	3300004480	Soil	LELLKRHFFEFERYQQVREKEMMEARVDAVFDSIRMDKEFLALTAGADGKLPIPMVRTAGGTEN*
Ga0062592_1008397492	3300004480	Soil	FQYERYQAVRAKEMMEARVDAVFDSLRYDSTFLALTSGADGKLQMPMRDMRGMPNR*
Ga0062592_1012160331	3300004480	Soil	HFYTYERYDAVRSKEMMEARVDAVFDALRADKDFLALTRFADGRLPMPAATSNGMTADE*
Ga0062592_1026699341	3300004480	Soil	FQYERYQAVRAKEMMEARVDAVFDSLRYDSSFLALTSGADGRLQMPMRDMRGMPNR*
Ga0062378_100032183	3300004780	Wetland Sediment	LLRRHFYRYERYQAVRAKEMMEARVDAVFDSLREDPKFLALTSGADGRLQMPLKGMNGARENK*
Ga0062382_100415872	3300004782	Wetland Sediment	HFFQYERYHAVREKEMMEARVDTVFDSLRADSAFLALTRYADGKLPMPMPGMSSPATNR*
Ga0066672_107995481	3300005167	Soil	LRRHFFQYERYQAVRAKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR*
Ga0066671_107308491	3300005184	Soil	HFFQYERYQSVRAKEMMEARVDAVFDSLRQDSAFLALTNGADGRLPMPMGHR*
Ga0065712_104845981	3300005290	Miscanthus Rhizosphere	RHFFQYERYQAVRAKEMMEARVDAVFDSIRYDTTFLALTSGADGKLQMPMRDTRSMQQDR
Ga0065705_111643311	3300005294	Switchgrass Rhizosphere	RHFFQYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSAADGKLQMPMRNMTGTSNR*
Ga0070677_108593602	3300005333	Miscanthus Rhizosphere	ERYQTVRAKEMMEARVDAVFDSIRYDSGFLALTSGADGKLQMPMRGMKDMRSMQNQDR*
Ga0068868_1003917691	3300005338	Miscanthus Rhizosphere	HFFRYERYHAVRAKEMMEARVDAVFDSLRQDSEFLALTSGADGRLQMPMRNMTGSANKD*
Ga0068868_1005664723	3300005338	Miscanthus Rhizosphere	HFFQYERYQAVREKEMMEARVDAVFDSIRFDQEFVALTRGADGKLPVPMKGMPATQAMPRQ*
Ga0070661_1008274821	3300005344	Corn Rhizosphere	HFFRYERYQTVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0070673_1001370611	3300005364	Switchgrass Rhizosphere	LQRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLRMPMRNMTGSSNRD*
Ga0070705_1004057851	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	ALLKRHFFRYERYQAVRSKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRGMDSRN*
Ga0070708_1016304232	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LLRRHFFQYERYQAVREKEMMEARVDAVFDSIRSDQSFIALTRGADGKLPMPMKGMTSGSKDNR*
Ga0070708_1020681121	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RYERYQAVRSKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRGMDSRN*
Ga0066682_104051013	3300005450	Soil	LRRHFFQYERYQAVREKEMMEARVDAVFESIRSEHSFLALTSGADGKLPMPMKSMPASASPNR*
Ga0068867_1023240902	3300005459	Miscanthus Rhizosphere	KALALLRRHFFMYERYPAVREKEMMEARVDLVFDSLREDSEFLALTSGADGKLQMPMKSMEMR*
Ga0070707_1014091481	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KRHFFQYERYQAVRSKEMMEARVDAVFDTLREDPSFVALTRGADGKLPLPMRDMKTMQNRER*
Ga0070707_1020713661	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KRHFFQYERYQAVRSKEMMEARVDAVFDTLREDPSFVALTRGADGKLPMSMRDMKTMQNRER*
Ga0070698_1001318487	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LLRRHFFRYERYQAVRTKEMMEARVDAVFDSIRTDREFVALTRGADGKLPVPMKGMPATQANPNR*
Ga0070699_1005563433	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	HFFRYERYQAVRTKEMMEARVDAVFDSIRTDREFVALTRGADGKLPIPMKGMPATQATPNR*
Ga0070695_1011624451	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	LALLQRHFFRYERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0070696_1003363062	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSEFLALTSGADGRLQIPMRNMTGSSNRD
Ga0070693_1001579402	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	QRHFFRYERYQAVRAKEMMEARVDAVFDSLRRDSAFLALTSRADGKLQMPMRNMTGTQNR
Ga0070693_1003847051	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	QRHFFQYERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD*
Ga0066700_103093011	3300005559	Soil	YERYSSVRAKEMMEARVDAVFDSIRSDKQFIALTRDADGKLPMKGMGGGSRTNR*
Ga0066699_100144321	3300005561	Soil	QYERYNSVRAKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKTMSERQ*
Ga0068855_1009203402	3300005563	Corn Rhizosphere	HRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMKNMTGSANRD*
Ga0068854_1021473122	3300005578	Corn Rhizosphere	HFYQYERYDQVRAKEMMEARVDAVFDSLRADKDFLALTKDADGRLPIPTMKKEAAGMMPN
Ga0070702_1010508492	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR
Ga0068859_1001192583	3300005617	Switchgrass Rhizosphere	TYERYQAVRAKEMMEARVDAVFDSLRQDSQFMALTSGADGKLRMPMRNMTGSSNRD*
Ga0068864_1019538941	3300005618	Switchgrass Rhizosphere	QRHFFRYERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR
Ga0068851_104986402	3300005834	Corn Rhizosphere	FFRYERYQSVRSKEMMEARVDAVFDSIRQDSAFLALTSGADGRLQMPMKEMKGTMQNQ*
Ga0068858_1010858172	3300005842	Switchgrass Rhizosphere	FFRYERYQSVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ*
Ga0068862_1002820442	3300005844	Switchgrass Rhizosphere	FLQRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTANQD*
Ga0066788_100690481	3300005944	Soil	KRHFFTYERYEAVRTKEMMEARVDAVFASLIQDKDFLALTSGADGRLPMPMSPNAKPAGN
Ga0066660_100246805	3300006800	Soil	FQYERYNSVRAKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKTMSERQ*
Ga0079220_100821221	3300006806	Agricultural Soil	FFRYERYQTVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLPMPMKSMTGTMQNQR*
Ga0079219_103329652	3300006954	Agricultural Soil	YERYQAVRSKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRDVKGMQQQR*
Ga0079218_110941852	3300007004	Agricultural Soil	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMKHITGSANR*
Ga0099830_102770191	3300009088	Vadose Zone Soil	RRHFFQYERYNSVRAKEMMEARVDAVFDSIRSDRTFIALTKGADGRLPMPNMSERQ*
Ga0066709_1004638091	3300009137	Grasslands Soil	LALLRRHFFQYERYQAVRAKEMMEARVDAVFESIRTDREFIALTHGADGRLLMKTMGAQQ
Ga0111538_116132721	3300009156	Populus Rhizosphere	ERYQTVRAKEMMEARVDAVFDSLRNDRSFMALTKGADGMLLMPMRDMRGNQNQQR*
Ga0111538_133077861	3300009156	Populus Rhizosphere	ERYQTVRAKEMMEARVDAVFDSLRNDRSFMALTKGADGMLPMPMRDMRGNQNQQR*
Ga0105237_117969991	3300009545	Corn Rhizosphere	RHFFQYERYQTVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD
Ga0126309_111460061	3300010039	Serpentine Soil	HFFQYERYQTVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMKNMTGTMNRN*
Ga0126380_101595441	3300010043	Tropical Forest Soil	LRRHFFRYERYQAVRAKEMMEARVDAVFETIRHDGEFMALTSGADGKLQMPMRNMSDRTENR*
Ga0126310_111917661	3300010044	Serpentine Soil	RYERYRAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0126311_100552594	3300010045	Serpentine Soil	QRHFFQYERYQAVRAKEMMEARVDAVFDTLRQDSAFLALTSGADGKLQMPMKNMSGSSNRN*
Ga0126311_106023262	3300010045	Serpentine Soil	HFFRYERYRAVRAKEMMEARVDAVFDSLRQDSGFLALTSGADGKLPMPVKDVRGMPNR*
Ga0126377_131233781	3300010362	Tropical Forest Soil	LKRHFFRYERYQTVRSKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRDVKGMPQQR*
Ga0134128_122985381	3300010373	Terrestrial Soil	QYERYHAVRAKEMMEARVDAVFDSIRYDSSFLALTSGADGKLQMPMRGMPTMQNR*
Ga0134128_128892302	3300010373	Terrestrial Soil	LALLQRHFFQYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTKGADGRLPMPMGHR*
Ga0105239_123375902	3300010375	Corn Rhizosphere	FFRYERYQSVRAKEMMEARVDAVFDSIRQDSSFLALTSGADGRLQMPSGNMKGMQQQ*
Ga0105239_136090212	3300010375	Corn Rhizosphere	KRHFFQYERYQAVRSKEMMEARVDAVFASLINDQQFMALTSGADGRLPIPMRSSSGSGQR
Ga0134124_103685261	3300010397	Terrestrial Soil	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTANQK
Ga0134124_112329911	3300010397	Terrestrial Soil	LKRHFFQYARYHAVRATEMMEARVDAVFDSLRYDSSFLALTSGADGRLQMPMRDMRGMPNR*
Ga0134124_122002791	3300010397	Terrestrial Soil	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLPMPMRNMTGTQNR*
Ga0134127_132635412	3300010399	Terrestrial Soil	YQAVRAKEMMEARVDAVFDSIRYDSGFLALTSSADGKLQMPMRGMPTMQNQNR*
Ga0134122_106429292	3300010400	Terrestrial Soil	LQRHFFRYERYQSVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ*
Ga0134122_113868031	3300010400	Terrestrial Soil	YERYQAVRTKEMMEARVDAVFDSLRQDAAFLALTQGADGKLAMPMKTATPTGSNK*
Ga0134121_120242422	3300010401	Terrestrial Soil	ALLKRHFFRYERYQTVRSKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRDVKGMQQQR*
Ga0137438_11574391	3300011431	Soil	FLKRHFYQYERYHAVRSKEMMEARVDAVFDSLRQDSEFLALTRHADGRLMMPMKNMGTGSENK*
Ga0137365_108285212	3300012201	Vadose Zone Soil	RHFFQYERYQAVRTKEMMEARVDAVFDSIRSDQAFIALTAGADGRLPVPMKSMGSPSRMNN*
Ga0137363_100509191	3300012202	Vadose Zone Soil	LEFLKRHFYQYERYQSVRAKEMMEARVDAVFDSLRADPGFIALTRNADGRLPMPMKPMGARSDANR*
Ga0137379_109946722	3300012209	Vadose Zone Soil	SLLRRHFFQYERYNSVRAKEMMEARVDAVFDSIRTDREFVALTKGADGRLPMPMKNMSERQ*
Ga0137366_110108651	3300012354	Vadose Zone Soil	SLLKRHFFNYERYQAVRSKEMMEARVDAVFDSLREDPAFLALTRNADGKLSMPMKAMGAPSRANR*
Ga0137373_100927371	3300012532	Vadose Zone Soil	RHFFQYERYQSVRAKEMMEARVDAVFDSIRSDQAFIALTRGADGRLPMPMKGMGTR*
Ga0137373_104235633	3300012532	Vadose Zone Soil	HFFQYERYQAVRAKEMMEARVDAVFESIRSDQSFIALTNGADGRLPIPMKGSSMQR*
Ga0137358_104021773	3300012582	Vadose Zone Soil	RRHFFQYERYQAVREKEMMEARVDAVFASIRGDHEFIALTSGADGKLPIPMKGMGSSSRDNK*
Ga0137394_107968361	3300012922	Vadose Zone Soil	FFQYERYRAVREKEMMEARVDTVFDSLREDSAFLALTRLADGKLPMPMPMKGMSSSSITNK*
Ga0164300_109120011	3300012951	Soil	LALLQRHFFRYERYQAVRAKEMMEARVDAVFDSLRNDRGFMALTKGADGMLPMPMRDMRGNQNQQR*
Ga0157378_120861982	3300013297	Miscanthus Rhizosphere	EALALLQRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPIRNMTGTQNR*
Ga0157372_126804822	3300013307	Corn Rhizosphere	LALLQRHFFQYERYQAVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLQMPMRNMTGSSNRD*
Ga0075309_10664631	3300014268	Natural And Restored Wetlands	LRRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLMMPMRPLTGTANQH*
Ga0163163_100596071	3300014325	Switchgrass Rhizosphere	HFFRYERYQSVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ*
Ga0157377_117647792	3300014745	Miscanthus Rhizosphere	QRHFFRYERYQAVRAKEMMEARVDAVFDSLRNDRGFMALTKGADGMLPMPMRDMRGNQNQQR*
Ga0132258_101019371	3300015371	Arabidopsis Rhizosphere	RYQAVRAKEMMEARVDAVFDSLRNDRGFMALTKGADGMLPMSMRDMRGNQNQQR*
Ga0132258_138696562	3300015371	Arabidopsis Rhizosphere	LLRRHFFRYERYQSVRAKEMMEARVDAVFDSIRQDSAFLALTSGADGRLQMPMRGMGTNQ
Ga0132257_1027698442	3300015373	Arabidopsis Rhizosphere	LLKRHFFRYERYQNVRAKEMMEARVDAVFDSIRQDSSFLALTSGADGRLQMPTGNMKGMQQK*
Ga0132257_1035633581	3300015373	Arabidopsis Rhizosphere	LKRHFFQFERYQQVREKEMMEARVDAVFDSIRMDGDFLALTNGADGKLPIPMVRSGGGTQN*
Ga0180121_102893981	3300017695	Polar Desert Sand	LLKRHFYQYERYHAVRSKEMMEARVDAVFDSLREDSAFLALTRHADGKLQMPMKPMGMRQ
Ga0184624_101181602	3300018073	Groundwater Sediment	LLKRHFFEYERYQAVRAKEMMEARVDAVFESIVHTKEFMELTKDADGKLPMPMKKK
Ga0184609_101785501	3300018076	Groundwater Sediment	LLRRHFFQYERYPAVRAKEMMEARVDTVFDSLREDKAFLALTSAADGKLPMPMKNMGMR
Ga0190272_123347521	3300018429	Soil	HFYQYERYHAVREKEMMEARVDAVFDSLREDSAFLALTRHADGKLQMPMKQSSGGMSR
Ga0190272_124803781	3300018429	Soil	RHFYQYERYHSVREKEMMEARVDAVFDSLREDSAFLALTRHADGKLQMPMKPMGMPPSMN
Ga0190269_115655022	3300018465	Soil	LAMLRRHFFEFERYRAVRTKEMMEARVDAVFSSLYEDANFLALTRGADGKLPLPSSSMGGSR
Ga0193739_10569362	3300020003	Soil	RHFYQYERYHAVRSKEMMEARVDAVFDSLRQDSAFLALTRHADGRLMMPMKGMAAPAGTN
Ga0213874_102815371	3300021377	Plant Roots	AMLKRHFFQYERYQAVRAKEMMEARVDAVFATLMHDPKFVELTKGADGRLPQPKMMSGNRTGS
Ga0247694_10327221	3300024178	Soil	LRRHFYQYERYQSVRAKEMMEARVDAVFDSIRTDREFVALTKNADGRLPIPMKGMPATQASPNR
Ga0207656_104299172	3300025321	Corn Rhizosphere	HFFRYERYQSVRSKEMMEARVDAVFDSIRQDSAFLALTSGADGRLQMPMKEMKGTMQNQ
Ga0207643_103733981	3300025908	Miscanthus Rhizosphere	YERYQAVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLRMPMRNMTGSSNRD
Ga0207684_101799322	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	QYERYQAVRSKEMMEARVDAVFDTLREDAAFVALTRGADGKLPMPMRDVKTMQNRER
Ga0207654_108567831	3300025911	Corn Rhizosphere	ALALLKRHFFRYERYQTVRAKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRDVKGMQQQR
Ga0207707_103840672	3300025912	Corn Rhizosphere	HFFEYERYQSVRSKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTANQD
Ga0207681_106185492	3300025923	Switchgrass Rhizosphere	RHFFRYERYQSVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ
Ga0207681_113750062	3300025923	Switchgrass Rhizosphere	YERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTTNRD
Ga0207650_104835492	3300025925	Switchgrass Rhizosphere	LALLERHFFKYERYQSVRAKEMMEARVDAVFDSLRQDSAFLALTKGADGRLQMPMKGMSGTQQNQ
Ga0207650_110199662	3300025925	Switchgrass Rhizosphere	RYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTTNRD
Ga0207687_107678672	3300025927	Miscanthus Rhizosphere	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR
Ga0207690_105283951	3300025932	Corn Rhizosphere	LQRHFFRYERYQTVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQN
Ga0207690_108323991	3300025932	Corn Rhizosphere	RYERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR
Ga0207665_101469461	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AFLKRHFYQYERYQSVRAKEMMEARVDAVFDSLRADPAFVALTNDADGRLPMPMGTRPQTNK
Ga0207689_112466622	3300025942	Miscanthus Rhizosphere	YERYQAVRAKEMMEARVDAMFDSLRQDSQFLALTSGADGKLRMPMRNMTGSSNRD
Ga0207651_120000542	3300025960	Switchgrass Rhizosphere	KRHFYQYERYQSVRAKEMMEARVDAVFDSLRADPAFIALTRDADGRLPMPMKPMGARTGANR
Ga0207677_107748022	3300026023	Miscanthus Rhizosphere	HFFRYERYHAVRAKEMMEARVDAVFDSLRQDSEFLALTSGADGRLQMPMRNMTGSANKD
Ga0207698_123047611	3300026142	Corn Rhizosphere	LLQRHFFKYERYQAVRAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMRNTTGTQNR
Ga0209849_10649151	3300026215	Soil	LKRHFFTYERYEAVRTKEMMEARVDAVFASLIQDKDFLALTSGADGRLPMPMSPNAKPAG
Ga0209472_12011221	3300026323	Soil	MLRRHFFQYERYNSVRAKEMMEARVDAVFDSIRADQSFIALTKGADGRLPMPMKGMPASATPNR
Ga0209177_101334371	3300027775	Agricultural Soil	LQRHFFRYERYQTVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLPMPMKSMTGTMQNQR
Ga0209112_102154122	3300027817	Forest Soil	DLLKRHFFSYERYEAVRTKEMMEARVDAVFASLIQDKEFLALTSGADGRLPMRMSPR
Ga0209683_103606731	3300027840	Wetland Sediment	HFFQYERYHAVREKEMMEARVDTVFDSLRADSAFLALTRYADGKLPMPMPGMSSPATNR
Ga0209486_105976642	3300027886	Agricultural Soil	RHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMKHITGSANR
Ga0268265_103578131	3300028380	Switchgrass Rhizosphere	YERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR
Ga0268264_104040192	3300028381	Switchgrass Rhizosphere	LQRHFFQYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTANQK
Ga0268264_122895472	3300028381	Switchgrass Rhizosphere	QRHFFRYERYHAVRAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMRNTTGTQNR
Ga0310888_102886491	3300031538	Soil	LALLQRHFFRYERYQTVRAKEMMEARVDAVFDSLRTDRSFMALTKGADGMLPMPMRDMRGNQNQQR
Ga0247727_102417101	3300031576	Biofilm	LQRHFHEYERYDAVRGEEMMEARVDAVFDSLRQDPEFLRLTAKADGRMQMPAGHTNH
Ga0307406_104551062	3300031901	Rhizosphere	HFFSYERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTRGADGKLQMPMRNMTGTPNR
Ga0307411_117305362	3300032005	Rhizosphere	QRHFFRYERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTANQ
Ga0310810_102161281	3300033412	Soil	FFEFERYQQVRSKEMMEARVDAVFDSIRRDADFMALTSGADGKLPIPMAKTGMPENN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F062587

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences