NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F062530

Metagenome / Metatranscriptome Family F062530

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F062530
Family Type Metagenome / Metatranscriptome
Number of Sequences 130
Average Sequence Length 99 residues
Representative Sequence VIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAA
Number of Associated Samples 97
Number of Associated Scaffolds 130

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 38.58 %
% of genes near scaffold ends (potentially truncated) 35.38 %
% of genes from short scaffolds (< 2000 bps) 82.31 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.692 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(23.846 % of family members)
Environment Ontology (ENVO) Unclassified
(26.154 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.385 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.
1JGI10216J12902_1018439552
2JGI25407J50210_101919391
3Ga0063356_1005881062
4Ga0070682_1003222452
5Ga0068868_1006614482
6Ga0070668_1009194392
7Ga0070674_1013867391
8Ga0070673_1006322072
9Ga0070678_1012985991
10Ga0068912_103674362
11Ga0070686_1006508332
12Ga0070665_1001496262
13Ga0068854_1002180942
14Ga0068854_1021148511
15Ga0070702_1001303871
16Ga0068862_1019751511
17Ga0081538_100113335
18Ga0081539_100549715
19Ga0075421_1010765102
20Ga0068865_1001806431
21Ga0079215_113012261
22Ga0105679_109843362
23Ga0105247_105792071
24Ga0105243_105802332
25Ga0111538_121899171
26Ga0126307_100097606
27Ga0126307_101344912
28Ga0126307_105924172
29Ga0126307_106795441
30Ga0126307_114795051
31Ga0126313_102849662
32Ga0126313_103458842
33Ga0126313_110485952
34Ga0126305_103017772
35Ga0126304_104084381
36Ga0126304_109809661
37Ga0126315_103375782
38Ga0126309_100089923
39Ga0126309_103746941
40Ga0126308_107006142
41Ga0126308_112083531
42Ga0126312_103190551
43Ga0126310_107407411
44Ga0126311_101668282
45Ga0126311_102150974
46Ga0126306_100225635
47Ga0126306_112937582
48Ga0134123_135957711
49Ga0127502_108386431
50Ga0136631_100585691
51Ga0136623_102035971
52Ga0136634_100455423
53Ga0136632_100926743
54Ga0136610_10174233
55Ga0136620_100416561
56Ga0136622_100386052
57Ga0136618_100882201
58Ga0136637_10272301
59Ga0136640_100446364
60Ga0136615_101049221
61Ga0136612_100020979
62Ga0136613_100589211
63Ga0136614_100623124
64Ga0136614_102430253
65Ga0136614_102747471
66Ga0164241_112643961
67Ga0157380_102406082
68Ga0157380_115990392
69Ga0157377_106438042
70Ga0180121_100509303
71Ga0183260_106085552
72Ga0136617_101565203
73Ga0136617_112042032
74Ga0190266_101021952
75Ga0190265_100218446
76Ga0190265_101534232
77Ga0190265_105253283
78Ga0190265_105707451
79Ga0190275_101598654
80Ga0190275_102030613
81Ga0190275_103716072
82Ga0190275_123219801
83Ga0190269_103314981
84Ga0190269_103722651
85Ga0190268_107043112
86Ga0190270_100049257
87Ga0190270_103587131
88Ga0190270_117604951
89Ga0190274_107661341
90Ga0190274_132503971
91Ga0190271_100169585
92Ga0190271_102796952
93Ga0193612_10794751
94Ga0190273_101463562
95Ga0190273_103045492
96Ga0190273_116851251
97Ga0190267_100792101
98Ga0190267_103089512
99Ga0190267_114599482
100Ga0207688_100451363
101Ga0207669_102337242
102Ga0207683_112574251
103Ga0207698_114144852
104Ga0208612_11591922
105Ga0268266_102355061
106Ga0268265_123088032
107Ga0247828_103024572
108Ga0247818_102433322
109Ga0247821_109606741
110Ga0307305_105718692
111Ga0307296_103066763
112Ga0307278_100384634
113Ga0247827_101321472
114Ga0299907_105962692
115Ga0247826_116452421
116Ga0299913_100102733
117Ga0307405_101744432
118Ga0307413_118285302
119Ga0307410_107271392
120Ga0307406_105201122
121Ga0307409_1004185021
122Ga0307411_119307891
123Ga0326721_103743292
124Ga0307415_1012875451
125Ga0307415_1014301281
126Ga0307415_1017021611
127Ga0314783_161896_1_279
128Ga0314786_078120_3_284
129Ga0314793_121459_301_564
130Ga0314803_084657_1_279
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 62.10%    β-sheet: 0.00%    Coil/Unstructured: 37.90%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090VIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAASequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
97.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Polar Desert
Polar Desert Sand
Soil
Terrestrial Soil
Serpentine Soil
Agricultural Soil
Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Soil
Soil
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Miscanthus Rhizosphere
Tabebuia Heterophylla Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
15.4%23.8%16.9%6.9%6.9%3.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10184395523300000956SoilMVAERLISVIGEPTSSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRHLAEMERRTCNDVIEQLRLHLDRRATAEGDAA*
JGI25407J50210_1019193913300003373Tabebuia Heterophylla RhizosphereVKLIIVISRTDPSEATRRLTDLRKAQPADATLKNLLGVLSAKLELCASLPVYEWEAVSEGFDACARAFRDLAEAERQSCTEVIDRLREHLVQRAGTQGGNL*
Ga0063356_10058810623300004463Arabidopsis Thaliana RhizosphereVIGEPTSSDAPLRLSDLRRDQPGDTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA*
Ga0070682_10032224523300005337Corn RhizosphereVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP*
Ga0068868_10066144823300005338Miscanthus RhizosphereTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAA*
Ga0070668_10091943923300005347Switchgrass RhizosphereVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAGGDAA*
Ga0070674_10138673913300005356Miscanthus RhizosphereVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAA*
Ga0070673_10063220723300005364Switchgrass RhizosphereVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSSAEGDAA*
Ga0070678_10129859913300005456Miscanthus RhizosphereVNVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP*
Ga0068912_1036743623300005506SoilTEATRRLSDLRRAQPGDATLRNLLSVLNSKMELCASLPVFEWEAGSEGWPDRAEAFRDLAESERQSCADLLEELRLHLEQRTALEGSA*
Ga0070686_10065083323300005544Switchgrass RhizosphereVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA*
Ga0070665_10014962623300005548Switchgrass RhizosphereVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA*
Ga0068854_10021809423300005578Corn RhizosphereDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSSAEGDAA*
Ga0068854_10211485113300005578Corn RhizosphereAKLVNVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP*
Ga0070702_10013038713300005615Corn, Switchgrass And Miscanthus RhizosphereISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP*
Ga0068862_10197515113300005844Switchgrass RhizosphereMVAERLCSVIGEPTSSDAPLRLSDLRRDQPGDTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA*
Ga0081538_1001133353300005981Tabebuia Heterophylla RhizosphereVISQPSPSEPTRRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGSEGHEDCAAAFRSLAEAERQSCNDVINRLREHLELRAVGLRGQA*
Ga0081539_1005497153300005985Tabebuia Heterophylla RhizosphereLTDLRRGQPADATLKNLLGVLSAKLELCASLPVYEWEAGTEGYEDCAAAFRDLAEAERRSTSAVIDRLREHLVQRAETQGGPS*
Ga0075421_10107651023300006845Populus RhizosphereVISRTDPSQATRRLADLRRSQPADATLRNLLGVLSAKLELCASLPVYEWEADSEGHGDCAMAFRDLAEAERRSCNEVIDQLREHLVHRASTQGGST*
Ga0068865_10018064313300006881Miscanthus RhizosphereAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSSAEGDAA*
Ga0079215_1130122613300006894Agricultural SoilVVGRSESPEATRRLGDLRRAQHADATLRNLLGVLSAKLELCATLPVYEWEAGSEGYDECAAAFRDLAVAERRSCTDMLDRLREHLDLRAARQGSIR*
Ga0105679_1098433623300007790SoilVISRTDPSEATRRLTDLRRGQPADATLKNLLGVLSAKLELCASLPVYEWEAGTEGYEDCAAAFRDLAEAERRSTSAVIDRLREHLVQRAETQGGHS*
Ga0105247_1057920713300009101Switchgrass RhizosphereMVAERLCSVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQFRLHL
Ga0105243_1058023323300009148Miscanthus RhizosphereMVAVRLTSVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA*
Ga0111538_1218991713300009156Populus RhizosphereRRSEAKLVNVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP*
Ga0126307_1000976063300009789Serpentine SoilVISRTEPSEATRRLGNLRRAQPTDATLRNLLGVLSAKLELCGSLPVFEWEAATEGYPERAAAFRELAEAERRSCSDVLEQLQAHLEQRAARQGGSA*
Ga0126307_1013449123300009789Serpentine SoilMLCVVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRSLAEAERQSCNDVLNRLREHLDHRAGHQ*
Ga0126307_1059241723300009789Serpentine SoilVISRTDPSEATRRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGSEGHEHCAAAFRSLAEAERQSCNEVLDQLREHLELRAAGLGAHR*
Ga0126307_1067954413300009789Serpentine SoilMVAERLISVIGEPTPSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTTCAHAFRHLAETERRTCNDVIEQLRLHLDRRETAEGDAA*
Ga0126307_1147950513300009789Serpentine SoilRLCGDGPGKLCSVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRTLAQAERESCNDVLDRLREHLEHRAAGLRGHQ*
Ga0126313_1028496623300009840Serpentine SoilVISQPSQSEPTRRLTDLRRGQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRTLAEAERESCNDVLDRLREHLEHRAAGLRGHQ*
Ga0126313_1034588423300009840Serpentine SoilVISRTDPTETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNVCASVLDRLREHLELRAGTQGGTP*
Ga0126313_1104859523300009840Serpentine SoilSLSNLRRSQPADATLKNLLGVLSTKLDLCASLPVFEWEAGSEGYEECAAAFRRLAEAERRSCTDVIDRLREHLEQRAHTQGGTT*
Ga0126305_1030177723300010036Serpentine SoilVISRTEPSEATRRLGNLRRAQPTDATLRNLLGVLSAKLELCGSLPVFEWEAATEGYPECASAFRELAEAERRSCSDVLEQLQAHLEQRAARQRGSA*
Ga0126304_1040843813300010037Serpentine SoilVISRTEPSEATRRLGNLRRAQPTDATLRNLLGVLSAKLELCGSLPVFEWEAATEGYPERAAAFRELAEAERRSCSDVLEQLQAHLEQRAARQGGS
Ga0126304_1098096613300010037Serpentine SoilVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRTLAEAERESCNDVLDRLREHLEHRAAGLRGHS*
Ga0126315_1033757823300010038Serpentine SoilVISQPSQSEPTRRLTDLRRGQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHVDCAAAFRTLAEAERASCNDVLDRLREHLEHRAADPRGHQ*
Ga0126309_1000899233300010039Serpentine SoilVIGRTDSSEATRRLGDLRRTQPADATLKNLLGVLSAKLELCATLPVFEWEAGREGHAESATAFRDLAEAERLSCCDVIEQLQAFLERRAAAQRGNS*
Ga0126309_1037469413300010039Serpentine SoilMTVISRTDPSEATRRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGSEGHEDCAAAFRTLAEAERRSCNEVLDQLREHLELRAAGLGAHR*
Ga0126308_1070061423300010040Serpentine SoilVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHADCAAAFRTLAEAERESCNDVLDRLREHLEHRAAGLRGHS*
Ga0126308_1120835313300010040Serpentine SoilMISGTEPSEATRRLGDLRRTQPTDATLRNLLGVLSAKLELCGSLPVFEWEATTEGYAERAAAFHDLAEAERQSCSEVLEQLREHLEQRATRQRGAA*
Ga0126312_1031905513300010041Serpentine SoilAKLVLVISRTDPTETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNVCASVLDRLREHLELRAGTQGGTP*
Ga0126310_1074074113300010044Serpentine SoilVKLMTVISRTDPSEATRRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGSEGHEDCAAAFRTLAEAERRSCNEVLDQLREHLEHRAAGLGADR*
Ga0126311_1016682823300010045Serpentine SoilVISRTDPSDTTRRLADLQRAQPADATLKNLLGYLNTKLDLCARLPVFEWEAGHEGYEDSAIAFRRLAEAERRLCAEVVECLRAHLDVCAATSEGPLA*
Ga0126311_1021509743300010045Serpentine SoilMISGTEPSEATRRLGDLRRTQPTDATLRNLLGVLSAKLELCGSLPVFEWEATTEGYAERAAAFHDLAEAERQSCSEVLEQLR
Ga0126306_1002256353300010166Serpentine SoilVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRTLAQAERESCNDVLDRLREHLEHRAAGLRGHQ*
Ga0126306_1129375823300010166Serpentine SoilVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRSLAEAERQSCNDVLNRLREHLDHRAGHQ*
Ga0134123_1359577113300010403Terrestrial SoilMVLGVISRTDSSDATRRLSDLRRAQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERASAFRELAEAERRSCSDVLDQLRAHLEQRATL
Ga0127502_1083864313300011333SoilSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA*
Ga0136631_1005856913300012043Polar Desert SandDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSLA*
Ga0136623_1020359713300012045Polar Desert SandLQQITFRQGPGSATLPSVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAAALGSPA*
Ga0136634_1004554233300012046Polar Desert SandVISRTDSSAATRRLSDLRRAQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRDLADAERRSCSDVLEQLRAHLEQQRAATMGSSA*
Ga0136632_1009267433300012093Polar Desert SandLQQITFRQGPVWATLPSVISRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA*
Ga0136610_101742333300012184Polar Desert SandLQQITFRQGPGSATLPSVISRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAAILGARRDPGRGHRRQRCRAR*
Ga0136620_1004165613300012186Polar Desert SandLQQITFRQGPGSATLPSVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA*
Ga0136622_1003860523300012187Polar Desert SandLQQITFRHGPVWATLPSVISRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA*
Ga0136618_1008822013300012188Polar Desert SandGRSPWTLQQITFRQGPGSATLPSVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLAQRAATLGSPA*
Ga0136637_102723013300012526Polar Desert SandFRQGPVWDTLPSVITRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSLA*
Ga0136640_1004463643300012531Polar Desert SandLQQITFRQGPVWDTLPSVITRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA*
Ga0136615_1010492213300012678Polar Desert SandLQQITFRQGPGSATLPSVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAAILGSPA*
Ga0136612_1000209793300012680Polar Desert SandMLPSVISRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLAQRAATLGSPA*
Ga0136613_1005892113300012681Polar Desert SandDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATIGSPA*
Ga0136614_1006231243300012684Polar Desert SandLQQITFRQGPVWATLPSVISRTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA*
Ga0136614_1024302533300012684Polar Desert SandVLGVISRTDSSEATRRLSDLRRAQPGDATLRNLLGVLNAKLELCANLPVFEWEASSEGWSERADAFRDLADAERRSCADVLEQLRAHIEQRAATLGSAA*
Ga0136614_1027474713300012684Polar Desert SandLQQITFRQGPGSATLPSVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAAT
Ga0164241_1126439613300012943SoilMVAERLCSVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSSA
Ga0157380_1024060823300014326Switchgrass RhizosphereMVAERLCSVIGEPTSSDAPLRLSDLRRDQPGDTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHSSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDVA*
Ga0157380_1159903923300014326Switchgrass RhizosphereVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCTTLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP*
Ga0157377_1064380423300014745Miscanthus RhizosphereMVAERLCSVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRS
Ga0180121_1005093033300017695Polar Desert SandMLPSVISRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA
Ga0183260_1060855523300017787Polar Desert SandLQQITFRQGPGSATLPSVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA
Ga0136617_1015652033300017789Polar Desert SandVTGPQARVLGVISRTDSSEATRRLSDLRRAQPGDATLRNLLGVLNAKLELCANLPVFEWEASSEGWSERADAFRDLADAERRSCADVLEQLRAHIEQRAATLGSAA
Ga0136617_1120420323300017789Polar Desert SandVISGTDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLG
Ga0190266_1010219523300017965SoilVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHSSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA
Ga0190265_1002184463300018422SoilVISRTEPSEATRRLTDLRRAQPADATLKNLLGVLSAKLELCASLPVYEWEAGSEGYEECAAAFRDLAEAERRSTSDVIDRLREHLVQRAATQGGTA
Ga0190265_1015342323300018422SoilMRFTFQQGPSAAKLIHVISRTDPSEATRRLTDLRRGQPADATLKNLLGVLSAKLELCASLPVYEWEAGTEGYEDCAAAFRDLAEAERRSTSAVIDRLREHLVQRAETQGGHS
Ga0190265_1052532833300018422SoilVISRTETSDATRRLSDLRRAQPADATLRNLLGVVSAKLELCASLPVFEWEAGSEGYEECAAAFRSLAEAERRSCSDVLDRLREHLDQRAATQGGTT
Ga0190265_1057074513300018422SoilVVGRSESPEATRRLGDLRRAQHADATLRNLLGVLSAKLELCATLPVYEWEAGSEGYEECAVAFRDLAVAERRSCSDMLDRLREHLDIRAARQGGTQ
Ga0190275_1015986543300018432SoilVISRTDSSDATRRLSDLRRAQPGDATLRNLLGILNAKLELCAHLPVFEWEASSEGWTDRATAFRDLADAERRSCSDVLEQLRAHLEQQRTATLGSSA
Ga0190275_1020306133300018432SoilMVAERLISVIGEPTSSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRHLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0190275_1037160723300018432SoilVISRPNTSDATRRLGDLRRAQPADATMKNLLNLLSTKLELCASLPVFEWEAGNEGYPECAAAFRELAEAERSSCADVLEHLRALLERRAAAPGGAS
Ga0190275_1232198013300018432SoilMVAERLISVIGEPTPSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTTCAHAFRHLAEMERRTCNDVIEQLRLHLDRRETAEGDAA
Ga0190269_1033149813300018465SoilLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRDLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0190269_1037226513300018465SoilVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGSEGHDDCATAFRALAEAERKSCNDVLNRLREHLDHRAAGLRGHQ
Ga0190268_1070431123300018466SoilMVAERLISVIGEPTSSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRDLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0190270_1000492573300018469SoilVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRTLADAERNLCASVLDRLREHLELRAGTQGGTP
Ga0190270_1035871313300018469SoilVRLVHVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHATCALAFRQLAEMERRTCNDVLEQLRLHLDRRSAAEGDAA
Ga0190270_1176049513300018469SoilVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYAWEAGTEGHTSCAHAFRHLAETERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0190274_1076613413300018476SoilVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRTLADAERNLCASVLD
Ga0190274_1325039713300018476SoilMVAERLISVIGEPTSSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTTCAHAFRHLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0190271_1001695853300018481SoilVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRTLADAERNLCASVLDRLREHLELRAGTQGGTS
Ga0190271_1027969523300018481SoilVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHATCALAFRHLAEMERRTCNDVLEQLRLHLDRRSAAEGDAA
Ga0193612_107947513300018757SoilVIRPDTTEATRRLSDLRRAQPGDATLRNLLSVLNSKMELCASLPVFEWEAGSEGWPDRAEAFRDLAESERQSCADLLEELRLHLEQRTALEGSA
Ga0190273_1014635623300018920SoilMVAERLISVIGEPTPSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRHLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0190273_1030454923300018920SoilVISQPDQSVATRRLSDLRRAQPADATLKNLLGVLSAKLELCASLPVFEWEAGSEGYEDCAIAFRSLAEAERRSCTDVIERLREHLENRAAAPVAHERESA
Ga0190273_1168512513300018920SoilVISRTDSSDVTRRLTDLRRAQPADATLRNLLGVLNAKLELCASLPVFEWEAGSEGHEDCAAAFRHLAEAERQSCSEILDRLRAHLDKRAMGQGPSA
Ga0190267_1007921013300019767SoilVIGEPPSTEAPRRLSDLRKGQPADATLRNLLGVLSAKLELCASLPVYEWEAGSEGHATSAIAFRNLAEAERQSCNDVMDELRRHLNSRVASEDHAA
Ga0190267_1030895123300019767SoilVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHSSCALAFRHLAEMERRTCNDVLEQLR
Ga0190267_1145994823300019767SoilSVIGEPTPSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRHLAETERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0207688_1004513633300025901Corn, Switchgrass And Miscanthus RhizosphereVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP
Ga0207669_1023372423300025937Miscanthus RhizosphereVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAA
Ga0207683_1125742513300026121Miscanthus RhizosphereAKLVNVISRTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP
Ga0207698_1141448523300026142Corn RhizosphereTEPSETTRRLTDLRRAQPADATLRNLLRVLDSKLDLCATLPVYEWEARSEGFEEAAAAFRSLADAERNLCASVLDRLREHLELRAGTQGGTP
Ga0208612_115919223300027638Polar DesertRPDSSAATRRLSDLRRSQPGDATLRNLLGILNAKLELCANLPVFEWEASSEGWTERAAAFRLLADAEQRSCSDVIEQLQAHLEQRAATLGSPA
Ga0268266_1023550613300028379Switchgrass RhizosphereVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA
Ga0268265_1230880323300028380Switchgrass RhizosphereRRGRGDPPAGGRLIPSQEGMVAERLVSVIGEPTSSDAPLRLSDLRRDQPGDTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA
Ga0247828_1030245723300028587SoilVISRTEPSEATRRLTDLRRAQPADATLKNLLGVLSAKLELCASLPVFEWEAGSEGFEECAATFRRLAEAERRSCTDVIDRLREHLEQRAQGGTT
Ga0247818_1024333223300028589SoilVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHSSCALAFRRLAEMERRTCNDVLEQLRLHLDDRRTTAEGDVA
Ga0247821_1096067413300028596SoilPSQEGMVAERLVSVIGEPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAGGDAA
Ga0307305_1057186923300028807SoilAEMLSSVISRTDPSDATRRLTDLRRAQPADATLKNLLGVLSAKLDLCASLPVFEWEAGTEGCEDCAAVFRRLAETERRSCTDVIDHLRQHLEHRAQSQGGAS
Ga0307296_1030667633300028819SoilFRPGRPAEMLSSVISRTDPSDATRRLTDLRRAQPADATLKNLLGVLSAKLDLCASLPVFEWEAGTEGCEDCAAVFRRLAETERRSCTDVIDHLRQHLEHRAQTQGGAS
Ga0307278_1003846343300028878SoilMLSIVISRTDPSDATRRLTDLRRAQPADATLKNLLGVLSAKLDLCASLPVFEWEAGTEGCEECAAVFRRLAETERRSCTDVIDHLRQHLEHRAQTQGGAS
Ga0247827_1013214723300028889SoilVIGEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAA
Ga0299907_1059626923300030006SoilVISRTDSSDATRRLSDLRRAQPADATLRNLLGVVSAKLELCASLPVFEWEAGSEGYDDCAAAFRSLAEAERQSCSDVLDRLREHLDRRSAARGGAAL
Ga0247826_1164524213300030336SoilLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGDAA
Ga0299913_1001027333300031229SoilVVGRSESAEETRRLGDLRRAQHADATLRNLLGVLSAKLELCATLPVYEWEAGSEGYEECATAFRALAVAERRSCSEMLDRLREHLDIRAARQGGTQ
Ga0307405_1017444323300031731RhizosphereVISRTEPSEATRRLGNLRRAQPTDATLRNLLGVLSAKLELCGSLPVFEWEAATEGYPERAAAFRELAEAERRSCSDVLEQLQAHLEQRAARQGGSA
Ga0307413_1182853023300031824RhizosphereVKLVIVISRTDPSEATKRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGTEGHEHCAAAFRTLAEAERRSCNEVLEQLREHLELRAAGLGADR
Ga0307410_1072713923300031852RhizosphereTKRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGTEGHEHCAAAFRTLAEAERRSCNEVLEQLREHLELRAAGLGADR
Ga0307406_1052011223300031901RhizosphereDRPGVVSFLPLDIRPGLTPFLTRDTTRRGRGDPPARGRLIPSSQGMVAERLISVIGEPTPSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRHLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0307409_10041850213300031995RhizosphereVISRTDPSEATKRLTDLRRAQPTDATLRNLLGVLSAKLELCASLPVYEWEAGTEGHEHCAAAFRTLAEAERRSCNEVLEQLREHLELRAAGLGADR
Ga0307411_1193078913300032005RhizosphereVISRTEPSEATRRLGNLRRAQPTDATLRNLLGVLSAKLELCGSLPVFEWEAATEGYPERAAAFRELAEAERRSCSDVLEQLQAHLEQRAA
Ga0326721_1037432923300032080SoilVISRTDPSEATRRITDLRRGQPADATLKNLLGVLSAKLELCASLPVYEWEAGTEGYEDCAAAFRDLAEAERRSTSAVIDRLREHLVQRADTQGGPS
Ga0307415_10128754513300032126RhizosphereDHPVGGRLIPSPAGMVAVRLVHVIGEPTPSDAPLRLSDLRRGQPADTTLRNLLGVLSAKLELCASLPVYEWEAGTEGHTSCAHAFRHLAEMERRTCNDVIEQLRLHLDRRATAEGDAA
Ga0307415_10143012813300032126RhizosphereVISRTDPSDATRRLSNLRRSQPADATLKNLLGVLSAKLELCASLPVFEWEAGTEGYEECAAAFRSLAEAERRSCTDVIDRLREHLEQRAHTQGGTT
Ga0307415_10170216113300032126RhizosphereIRVDAPVMLCVVISQPSQSEPTRRLTDLRRAQPTDATLRNLLGVLTAKLELCASLPVYEWEAGSEGHDDCAAAFRSLAEAERQSCNDVLNRLREHLDHRAGHQ
Ga0314783_161896_1_2793300034662SoilPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAEGGAA
Ga0314786_078120_3_2843300034664SoilEPTPSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHASCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAGGDAA
Ga0314793_121459_301_5643300034668SoilAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAGGDAA
Ga0314803_084657_1_2793300034678SoilPTSSDAPLRLSDLRRDQPADTTLRNLLGVLSAKLELCASLPVYEWEAGSEGHTSCALAFRHLAEMERRTCNDVLEQLRLHLDRRSTAGGDAA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.