Metagenome / Metatranscriptome Family F062516

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062516
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	48 residues
Representative Sequence	MIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Number of Associated Samples	91
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.85 %
% of genes near scaffold ends (potentially truncated)	83.08 %
% of genes from short scaffolds (< 2000 bps)	93.08 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.231 % of family members)
Environment Ontology (ENVO)	Unclassified (47.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.692 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.00% β-sheet: 0.00% Coil/Unstructured: 56.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF03592	Terminase_2	9.23
PF00589	Phage_integrase	7.69
PF00239	Resolvase	6.15
PF02796	HTH_7	4.62
PF13936	HTH_38	1.54
PF03401	TctC	0.77
PF13384	HTH_23	0.77
PF04290	DctQ	0.77
PF00271	Helicase_C	0.77
PF04218	CENP-B_N	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	9.23
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	6.15
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	6.15
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.62 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.62 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.62 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.23 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.92 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	32.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.31 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.77 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.31 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.92 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.31 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.85 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	2.31 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.77 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.31 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	3.85 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	2.31 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.77 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04Y7I3M	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig1261223	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1031890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1064365	Not Available	540	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1038110	Not Available	624	Open in IMG/M
3300000955\|JGI1027J12803_102085609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1359	Open in IMG/M
3300000955\|JGI1027J12803_108281345	Not Available	1028	Open in IMG/M
3300000955\|JGI1027J12803_109715030	Not Available	548	Open in IMG/M
3300004267\|Ga0066396_10047549	Not Available	679	Open in IMG/M
3300004281\|Ga0066397_10071391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	674	Open in IMG/M
3300005332\|Ga0066388_104945118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300005332\|Ga0066388_107894459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300005332\|Ga0066388_108491842	Not Available	511	Open in IMG/M
3300005363\|Ga0008090_10042009	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300005445\|Ga0070708_101368171	Not Available	661	Open in IMG/M
3300005471\|Ga0070698_101386598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300005713\|Ga0066905_102323628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	502	Open in IMG/M
3300005764\|Ga0066903_101405197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	1311	Open in IMG/M
3300005764\|Ga0066903_103466704	Not Available	850	Open in IMG/M
3300005764\|Ga0066903_108936096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	508	Open in IMG/M
3300005764\|Ga0066903_108973931	Not Available	506	Open in IMG/M
3300006854\|Ga0075425_103044088	Not Available	512	Open in IMG/M
3300006969\|Ga0075419_10386997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	956	Open in IMG/M
3300009094\|Ga0111539_12928676	Not Available	552	Open in IMG/M
3300009100\|Ga0075418_10172700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2301	Open in IMG/M
3300009147\|Ga0114129_12274648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	651	Open in IMG/M
3300009147\|Ga0114129_13341458	Not Available	518	Open in IMG/M
3300009792\|Ga0126374_11311872	Not Available	585	Open in IMG/M
3300010043\|Ga0126380_11002703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	703	Open in IMG/M
3300010043\|Ga0126380_11544086	Not Available	590	Open in IMG/M
3300010043\|Ga0126380_12238374	Not Available	506	Open in IMG/M
3300010046\|Ga0126384_11441900	Not Available	643	Open in IMG/M
3300010046\|Ga0126384_12322815	Not Available	518	Open in IMG/M
3300010048\|Ga0126373_12010320	Not Available	640	Open in IMG/M
3300010358\|Ga0126370_10752489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300010359\|Ga0126376_10312852	Not Available	1372	Open in IMG/M
3300010359\|Ga0126376_11501874	Not Available	702	Open in IMG/M
3300010359\|Ga0126376_13199255	Not Available	507	Open in IMG/M
3300010360\|Ga0126372_11693895	Not Available	673	Open in IMG/M
3300010360\|Ga0126372_13059231	Not Available	519	Open in IMG/M
3300010361\|Ga0126378_10241060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1899	Open in IMG/M
3300010361\|Ga0126378_10956031	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300010361\|Ga0126378_11202966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300010376\|Ga0126381_101293555	Not Available	1054	Open in IMG/M
3300010398\|Ga0126383_12365711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	616	Open in IMG/M
3300010398\|Ga0126383_13455212	Not Available	516	Open in IMG/M
3300010863\|Ga0124850_1047383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1352	Open in IMG/M
3300012202\|Ga0137363_10787980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	806	Open in IMG/M
3300012211\|Ga0137377_11367165	Not Available	637	Open in IMG/M
3300012356\|Ga0137371_10725845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300012948\|Ga0126375_10274993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1155	Open in IMG/M
3300012948\|Ga0126375_10457722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	939	Open in IMG/M
3300012948\|Ga0126375_11435868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	587	Open in IMG/M
3300012971\|Ga0126369_10662031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1119	Open in IMG/M
3300012971\|Ga0126369_11733196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300013500\|Ga0120195_1011357	Not Available	668	Open in IMG/M
3300015371\|Ga0132258_12626351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1258	Open in IMG/M
3300015371\|Ga0132258_13628355	Not Available	1055	Open in IMG/M
3300015372\|Ga0132256_100311733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1660	Open in IMG/M
3300015373\|Ga0132257_101015345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1044	Open in IMG/M
3300015373\|Ga0132257_102233079	Not Available	708	Open in IMG/M
3300015374\|Ga0132255_100614722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1608	Open in IMG/M
3300016270\|Ga0182036_10166856	Not Available	1583	Open in IMG/M
3300016270\|Ga0182036_10311273	Not Available	1201	Open in IMG/M
3300016270\|Ga0182036_11036768	Not Available	677	Open in IMG/M
3300016294\|Ga0182041_11957984	Not Available	545	Open in IMG/M
3300016319\|Ga0182033_10521237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1024	Open in IMG/M
3300016341\|Ga0182035_10730661	Not Available	864	Open in IMG/M
3300016357\|Ga0182032_10461606	Not Available	1038	Open in IMG/M
3300016357\|Ga0182032_11484803	Not Available	588	Open in IMG/M
3300016357\|Ga0182032_11622170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300016371\|Ga0182034_10091729	Not Available	2149	Open in IMG/M
3300016371\|Ga0182034_11153004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300016387\|Ga0182040_11578299	Not Available	558	Open in IMG/M
3300016422\|Ga0182039_10791489	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300016422\|Ga0182039_11666812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300016445\|Ga0182038_10289786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1334	Open in IMG/M
3300016445\|Ga0182038_10480590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1056	Open in IMG/M
3300021560\|Ga0126371_10365222	All Organisms → cellular organisms → Bacteria → Proteobacteria	1580	Open in IMG/M
3300021560\|Ga0126371_13274124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300021560\|Ga0126371_13817309	Not Available	508	Open in IMG/M
3300027527\|Ga0209684_1053155	Not Available	625	Open in IMG/M
3300027654\|Ga0209799_1122341	Not Available	593	Open in IMG/M
3300027874\|Ga0209465_10410617	Not Available	678	Open in IMG/M
3300031543\|Ga0318516_10000405	All Organisms → cellular organisms → Bacteria → Proteobacteria	13165	Open in IMG/M
3300031546\|Ga0318538_10509557	Not Available	652	Open in IMG/M
3300031564\|Ga0318573_10013659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3507	Open in IMG/M
3300031573\|Ga0310915_10005787	All Organisms → cellular organisms → Bacteria	6890	Open in IMG/M
3300031573\|Ga0310915_10346093	Not Available	1053	Open in IMG/M
3300031679\|Ga0318561_10088774	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300031679\|Ga0318561_10403416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	751	Open in IMG/M
3300031681\|Ga0318572_10301818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	946	Open in IMG/M
3300031682\|Ga0318560_10015718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3367	Open in IMG/M
3300031724\|Ga0318500_10582399	Not Available	566	Open in IMG/M
3300031736\|Ga0318501_10264545	Not Available	912	Open in IMG/M
3300031744\|Ga0306918_10292917	Not Available	1252	Open in IMG/M
3300031748\|Ga0318492_10028258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2502	Open in IMG/M
3300031751\|Ga0318494_10150189	Not Available	1311	Open in IMG/M
3300031768\|Ga0318509_10716442	Not Available	555	Open in IMG/M
3300031771\|Ga0318546_10831385	Not Available	650	Open in IMG/M
3300031778\|Ga0318498_10157525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1033	Open in IMG/M
3300031780\|Ga0318508_1061962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1003	Open in IMG/M
3300031782\|Ga0318552_10278083	Not Available	850	Open in IMG/M
3300031796\|Ga0318576_10364231	Not Available	683	Open in IMG/M
3300031797\|Ga0318550_10286042	Not Available	800	Open in IMG/M
3300031860\|Ga0318495_10175589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	966	Open in IMG/M
3300031896\|Ga0318551_10284951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	927	Open in IMG/M
3300031897\|Ga0318520_10010345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4041	Open in IMG/M
3300031897\|Ga0318520_10203324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1169	Open in IMG/M
3300031910\|Ga0306923_10815378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1029	Open in IMG/M
3300031912\|Ga0306921_11504889	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300031941\|Ga0310912_10236421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1403	Open in IMG/M
3300031946\|Ga0310910_10567134	Not Available	900	Open in IMG/M
3300031947\|Ga0310909_10314329	Not Available	1313	Open in IMG/M
3300031954\|Ga0306926_10674876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1255	Open in IMG/M
3300031954\|Ga0306926_11467318	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300031954\|Ga0306926_11567444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300032035\|Ga0310911_10098705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1599	Open in IMG/M
3300032035\|Ga0310911_10542711	Not Available	674	Open in IMG/M
3300032042\|Ga0318545_10094284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1045	Open in IMG/M
3300032044\|Ga0318558_10499364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300032052\|Ga0318506_10177255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	938	Open in IMG/M
3300032054\|Ga0318570_10121639	Not Available	1154	Open in IMG/M
3300032059\|Ga0318533_10004607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	7761	Open in IMG/M
3300032066\|Ga0318514_10195677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300032068\|Ga0318553_10207902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1020	Open in IMG/M
3300032076\|Ga0306924_10275174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1933	Open in IMG/M
3300032076\|Ga0306924_12248864	Not Available	554	Open in IMG/M
3300032091\|Ga0318577_10633225	Not Available	508	Open in IMG/M
3300033290\|Ga0318519_10182327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.77%
Host-Associated	Host-Associated	9.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.77%
Plants	Host-Associated → Plants	9.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.46%
Loam	Environmental → Terrestrial → Soil → Loam	12.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.08%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.54%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.77%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013500	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep2	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_02032140	2070309004	Green-Waste Compost	LRCFMIELRETEIDALIRNGLLAAENRHDYESVQSALYAFLDRALGELSDT
KansclcFeb2_01904550	2124908045	Soil	MIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDHALGELRDA
AP72_2010_repI_A01DRAFT_10318901	3300000579	Forest Soil	IDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
AP72_2010_repI_A01DRAFT_10643652	3300000579	Forest Soil	RRRDGLRCLIIELRETEVDVLIRKGLLAAENRQDYASVQSALYAFLDHALGEMRDA*
AP72_2010_repI_A10DRAFT_10381101	3300000651	Forest Soil	RRRDGLRCLIIEXRETEVDVLIRKGLLAAENRQDYASVQSALYAFLDYALGEMRDA*
JGI1027J12803_1020856093	3300000955	Soil	MRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
JGI1027J12803_1082813452	3300000955	Soil	CLMIELRETEIDALIRNGLLAEENRHDYDSVQSAFYAFLDHALGKLRDA*
JGI1027J12803_1097150302	3300000955	Soil	LRCLMIELRETEIDALIKVGLLPPENRHDYDSVQSALYAFLDDAFRELRDA*
Ga0066396_100475492	3300004267	Tropical Forest Soil	DGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0066397_100713911	3300004281	Tropical Forest Soil	MMIELRETEVDALIRQGLLAAENRDDYDSVQSALYAFLDRALGELGDA*
Ga0066388_1049451181	3300005332	Tropical Forest Soil	ELRETEVDALIRKGLLAAENRHDYDSVQSAFYAFLDRALGNWVMRNAQSELP*
Ga0066388_1078944591	3300005332	Tropical Forest Soil	ELRETEIDALIRNGLLAAENRQDYDSVQSALYAFLDRALGELGDA*
Ga0066388_1084918421	3300005332	Tropical Forest Soil	RMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRQDYDSVQSAFYAFLDHALGELRDA*
Ga0008090_100420091	3300005363	Tropical Rainforest Soil	RRDGLRCFMIELRETEIDALIRKGLLAAENRHDYEAVQSAFYAFLDHALGELRDA*
Ga0070708_1013681712	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRSLGEFGDA*
Ga0070698_1013865981	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MIELRETEIDALIRNGLLAAANRHDYDSVQSAPYAFLDRSLGKLRDA*
Ga0066905_1023236281	3300005713	Tropical Forest Soil	MIELRETEIDALIRNGLLTAENRHDYDSVQSAFYAFLDHALRIA*
Ga0066903_1014051972	3300005764	Tropical Forest Soil	MRRHRQRRRDGLRCLIIELRETEIDVLIRKGLLPAESRQDYASVQSAFYAFLDGTFGELRDV*
Ga0066903_1034667041	3300005764	Tropical Forest Soil	CLMIELRETEVDALIKKGLLAAESRLDYDSVQLAFYAFLDRALRELGDA*
Ga0066903_1089360962	3300005764	Tropical Forest Soil	MRRHRQRRRDGLRCLLIELRETEIDGLISNGLLAAEKREDYDSVQTAFYAFLDDAFEELSDA*
Ga0066903_1089739311	3300005764	Tropical Forest Soil	LRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGGLGDT*
Ga0075425_1030440882	3300006854	Populus Rhizosphere	MIELRETEIDALIRNGLLAPENRHDYDSVQSALYAFLDDALGE*
Ga0075419_103869972	3300006969	Populus Rhizosphere	RRDGFRCLMIELRETEIDALISNGLLAAYNRQDYDSVQSAFYAFLDDAFEELRDA*
Ga0111539_129286761	3300009094	Populus Rhizosphere	IDALISNGLLAAEDRQDYDSLQSAFYSFLDDAFEELRDA*
Ga0075418_101727001	3300009100	Populus Rhizosphere	HRQRRRDGLRCFIIELRETEVDVLIRKGLLLTENRQDYSSVQSAFYAFLDDAFAELRDA*
Ga0114129_122746481	3300009147	Populus Rhizosphere	IDALISNGLLAAENRQDYDSVHSAFYAFLDDAFGIA*
Ga0114129_133414581	3300009147	Populus Rhizosphere	RQRRSDGLRCLMIELRETEIDALISNGLLAAYNRQDYDSVQSAFYAFLDDAFEELRDA*
Ga0126374_113118722	3300009792	Tropical Forest Soil	ETEVDALIRQGLLAAENRHDYDSVQSALYAFLNRALGESRDA*
Ga0126380_110027032	3300010043	Tropical Forest Soil	AAERMRRHRQRRRDGLRCLIIELRETEIDVLISNGLLAAEKRQDYDSVQSAFYAFLDDAFGDA*
Ga0126380_115440861	3300010043	Tropical Forest Soil	ETEIDALIRKGLLAGENRHDYDSVQSALYAFLDHALGELRDA*
Ga0126380_122383741	3300010043	Tropical Forest Soil	IELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA*
Ga0126384_114419002	3300010046	Tropical Forest Soil	IRNGLLAAENSHDYDSVQSALYAFLDRSLGELGDA*
Ga0126384_123228152	3300010046	Tropical Forest Soil	RCLMIELRETEVDALIRQGLLAAENRHDYDSVQSALYAFLDRALGELRDA*
Ga0126373_120103201	3300010048	Tropical Forest Soil	RDGLRCFMIELRETEIDALIRKGLLPPGNRHDYDSVQSALYAFLDRALGELGYA*
Ga0126370_107524891	3300010358	Tropical Forest Soil	MIELRETEIDALIRNGLLAAENRHDYDSVQLALYAFLDRALGELG
Ga0126376_103128521	3300010359	Tropical Forest Soil	LIRKGLLAAENRHDYESVQSAFYAFLDHALGELRDA*
Ga0126376_115018742	3300010359	Tropical Forest Soil	RHRQRRRDGLRCLMIELRETEIDALICNGLLAAENRQDYDSVQTAFYAFLDDAFGELRDA
Ga0126376_131992552	3300010359	Tropical Forest Soil	FMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDHALGEMRDV*
Ga0126372_116938951	3300010360	Tropical Forest Soil	IDALISNGLLAAEKRQDYDSIQSAFYAFLDNAFGELRDA*
Ga0126372_130592312	3300010360	Tropical Forest Soil	RHRQRLRDGLRCLLIELRETEIDALVSNKLLASENRQDYASVQSAFYAFLDHALGELRDA
Ga0126378_102410602	3300010361	Tropical Forest Soil	MIELRETEIDALVRNGLLAAENRHDYESVQSALYAFLDHALGGIA*
Ga0126378_109560311	3300010361	Tropical Forest Soil	MIEIRETEIDALIRKGLLAAENRYDYDSVQSALYAFLDRALGELGDA*
Ga0126378_112029661	3300010361	Tropical Forest Soil	ETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126381_1012935551	3300010376	Tropical Forest Soil	IELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGKLGDA*
Ga0126383_123657112	3300010398	Tropical Forest Soil	IRNGLLAAEKRDDYDSVQSALYAFLDRALGEMGVVPPQLT*
Ga0126383_134552122	3300010398	Tropical Forest Soil	MIEIRETEIDALIRKGLLAAENRHDYEAVQSAFYAFLDHALGELRDA*
Ga0124850_10473831	3300010863	Tropical Forest Soil	MIELRETEVDALIRKGLLAAENRHDYDSVQSAFYAFLDRALGNWVMRNAQSELP*
Ga0137363_107879801	3300012202	Vadose Zone Soil	RRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA*
Ga0137377_113671651	3300012211	Vadose Zone Soil	CLIIELRETEINALIRNGLLQPENRHDYGSVQSALYAFLDNALGELGDA*
Ga0137371_107258451	3300012356	Vadose Zone Soil	ETEIDALIRKGLLAAENRHDYDLVQSALYAFLDHALGELRDA*
Ga0126375_102749934	3300012948	Tropical Forest Soil	QRRRDGLRCFIIELRETEIDALIRKGLLGAENRHDYNSIQLALYAFLDRALGEMRDA*
Ga0126375_104577222	3300012948	Tropical Forest Soil	RCLIIELRETEIDVLIRKGLLPAENRQDYASVQSALYAFLDDTFGELRDA*
Ga0126375_114358681	3300012948	Tropical Forest Soil	MRRHRQRRRDGLRCFMIELRETEIDALIGKGLLATENRHDYDSVQSALYEFLDRALGESGDA*
Ga0126369_106620311	3300012971	Tropical Forest Soil	RHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDCDSVQSAFYAFMLWENCVMRNG
Ga0126369_117331961	3300012971	Tropical Forest Soil	LIRKGLLAAENRHDYDSVQSAFYAFLDRALGELGDA*
Ga0120195_10113572	3300013500	Terrestrial	MIELRETEIDALIRKGLLGAENRHDYDSVQSALYAFLDRALGELGDA*
Ga0132258_126263511	3300015371	Arabidopsis Rhizosphere	IELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0132258_136283552	3300015371	Arabidopsis Rhizosphere	MIELRETEVDDLISNGLLAAENRQDYASVQSAFYAFLDNAFEELRDA*
Ga0132256_1003117332	3300015372	Arabidopsis Rhizosphere	MRRHRQRRRDGLRCLMIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0132257_1010153452	3300015373	Arabidopsis Rhizosphere	MRRHRQRRRDGFRCLMIELRETEIDALISTGLLAAHNRQDYESVQSALYAFLDDAFRELRDA*
Ga0132257_1022330791	3300015373	Arabidopsis Rhizosphere	EVDDLISNGLLAAENRQDYASVQSAFYAFLDNAFEELRDA*
Ga0132255_1006147223	3300015374	Arabidopsis Rhizosphere	IIELRETEVDTLIRKGLLQSENREDYASVQSALYAFLDDALGELRDA*
Ga0182036_101668561	3300016270	Soil	IELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0182036_103112734	3300016270	Soil	DGLRCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0182036_110367682	3300016270	Soil	LRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0182041_119579841	3300016294	Soil	LRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELRDA
Ga0182033_105212371	3300016319	Soil	LIRNGLLAAENRLDYDSVQSALYAFLDRALGELRDA
Ga0182035_107306611	3300016341	Soil	IELRETEIDALIRNGLLAAENRHDYDSAQSALYAFLDRALGELGDA
Ga0182032_104616063	3300016357	Soil	RCFIIELRETEIDALIRNGLLAAENRHDYDSAQSALYAFLDRALGELGDA
Ga0182032_114848031	3300016357	Soil	RRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDV
Ga0182032_116221701	3300016357	Soil	IDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0182034_100917294	3300016371	Soil	LRETEIDALIRNGLLAAENRHDYDSAQSALYAFLDRALGELGDA
Ga0182034_111530041	3300016371	Soil	IELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0182040_115782991	3300016387	Soil	ETEIDALIRQGLLEAENRNDCDSVQSALYAFLDRALGELRDA
Ga0182039_107914891	3300016422	Soil	ELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0182039_116668121	3300016422	Soil	ETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELSDT
Ga0182038_102897863	3300016445	Soil	CFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0182038_104805902	3300016445	Soil	RRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRD
Ga0126371_103652223	3300021560	Tropical Forest Soil	RETEIDALIRKGLLGAEHRHDYDSVQSALYAFLDSALGGIG
Ga0126371_132741241	3300021560	Tropical Forest Soil	RCFMIELRETEIDALIRNGLLAAENRQDYDSVQSALYAFLDRALGDCMMRNAQSKLP
Ga0126371_138173091	3300021560	Tropical Forest Soil	ELRETEVDALIRKGLLGAENRHDYDSVQSALYAFLDRALGELGDA
Ga0209684_10531551	3300027527	Tropical Forest Soil	IDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA
Ga0209799_11223411	3300027654	Tropical Forest Soil	ALIRKGLLAAENRHDYESVQSAFYAFLDHALGELRDA
Ga0209465_104106171	3300027874	Tropical Forest Soil	AERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELGDA
Ga0318516_100004052	3300031543	Soil	MIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0318538_105095571	3300031546	Soil	DALIRNGLLAAENRHDYDSAQSALYAFLDRALGELGDA
Ga0318573_100136591	3300031564	Soil	FMIELRETEIDALIRNGLLAAENRLDYDSVQSALYAFLDRALGELGDA
Ga0310915_100057879	3300031573	Soil	MIELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0310915_103460933	3300031573	Soil	IDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0318561_100887743	3300031679	Soil	GLRCFMIELRETEIDALIRNGLLAAENRLDYDSVQSALYAFLDRALGELGDA
Ga0318561_104034161	3300031679	Soil	FMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0318572_103018181	3300031681	Soil	ERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318560_100157185	3300031682	Soil	IRNGQLAAENSHDYDSVQSALYAFLDRSLGELGDA
Ga0318500_105823992	3300031724	Soil	DGLRCLVIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0318501_102645451	3300031736	Soil	CFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0306918_102929171	3300031744	Soil	FMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0318492_100282585	3300031748	Soil	DALIRNGQLAAENSHDYDSVQSALYAFLDRSLGELGDA
Ga0318494_101501891	3300031751	Soil	FMIELRETEIDALIRNGILAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0318509_107164422	3300031768	Soil	EIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0318546_108313851	3300031771	Soil	LRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0318498_101575251	3300031778	Soil	RCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRSLGELGDA
Ga0318508_10619622	3300031780	Soil	DALIRNGLLAAENRLDYDSVQSALYAFLDRALGELGDA
Ga0318552_102780831	3300031782	Soil	MIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318576_103642311	3300031796	Soil	RCFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDV
Ga0318550_102860422	3300031797	Soil	IRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0318495_101755893	3300031860	Soil	LIRNGLLAAENSHDYDSVQSALYAFLDRSLGELGDA
Ga0318551_102849512	3300031896	Soil	DGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318520_100103456	3300031897	Soil	ELRETEIDALIRNGQLAAENSHDYDSVQSALYAFLDRSLGELGDA
Ga0318520_102033244	3300031897	Soil	RDGLRCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0306923_108153782	3300031910	Soil	ETEIDALIRNGILAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0306921_115048892	3300031912	Soil	LRCFMIELRETEIDALIRNGLLAAENRHDYDSAQAALYAFLDRALGELGDA
Ga0310912_102364213	3300031941	Soil	LIRNGQLAAENSHDYDSVQSALYAFLDRSLGELGDA
Ga0310910_105671341	3300031946	Soil	GLRCFIIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGKLGDA
Ga0310909_103143294	3300031947	Soil	GLRCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0306926_106748763	3300031954	Soil	LRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRTLGELRDA
Ga0306926_114673181	3300031954	Soil	MIELRETEIDALIRKGLLAAENSHDYDSVQSALYAFLDRALG
Ga0306926_115674441	3300031954	Soil	LRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELRDA
Ga0310911_100987051	3300032035	Soil	DALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0310911_105427111	3300032035	Soil	ELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRALGELGDA
Ga0318545_100942842	3300032042	Soil	RRRDGLRCFMIELRETEIDALIRNGLLAAENRLDYDSVQSALYAFLDRALGELGDA
Ga0318558_104993642	3300032044	Soil	GLRCFMIELRETEIDALIRNGILAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0318506_101772551	3300032052	Soil	TEIDALIRNGILAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0318570_101216391	3300032054	Soil	IRQGLLAAGSRHDYDSVQSALYAFLDRALGELRDA
Ga0318533_100046078	3300032059	Soil	MIELRETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0318514_101956771	3300032066	Soil	IRKGLLGAENRHDYDSVQSALYAFLDQALGELGDA
Ga0318553_102079021	3300032068	Soil	GLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0306924_102751741	3300032076	Soil	LRETEIDALIRNGLLAAENSHDYDSVQSALYAFLDRALGELGDA
Ga0306924_122488642	3300032076	Soil	CFMIELRETEIDALIRNGLLAAENRLDYDSVQSALYAFLDRALGELRDA
Ga0318577_106332251	3300032091	Soil	RETEIDALIRNGLLAAENRHDYDSVQSALYAFLDRAFGGIG
Ga0318519_101823273	3300033290	Soil	TEIDALIRNGLLAAENSHDYDSVQSALYAFLDRTLGELRDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062516

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences