Metagenome / Metatranscriptome Family F062508

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062508
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	44 residues
Representative Sequence	EIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Number of Associated Samples	88
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.77 %
% of genes near scaffold ends (potentially truncated)	99.23 %
% of genes from short scaffolds (< 2000 bps)	96.15 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.615 % of family members)
Environment Ontology (ENVO)	Unclassified (58.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.462 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.11% β-sheet: 0.00% Coil/Unstructured: 63.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF04392	ABC_sub_bind	41.54
PF00126	HTH_1	10.77
PF00582	Usp	6.92
PF02668	TauD	2.31
PF13379	NMT1_2	1.54
PF01266	DAO	0.77
PF08734	GYD	0.77
PF04191	PEMT	0.77
PF04286	DUF445	0.77
PF01717	Meth_synt_2	0.77
PF01965	DJ-1_PfpI	0.77
PF01425	Amidase	0.77
PF01650	Peptidase_C13	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	41.54
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.31
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.77
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.77
COG2733	Uncharacterized membrane-anchored protein YjiN, DUF445 family	Function unknown [S]	0.77
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.77
COG4399	Uncharacterized membrane protein YheB, UPF0754 family	Function unknown [S]	0.77
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.62 %
Unclassified	root	N/A	5.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.62 %
Unclassified	root	N/A	5.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.62 %
Unclassified	root	N/A	5.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.46 %
Unclassified	root	N/A	5.38 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.38 %
Unclassified	root	N/A	5.38 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.62 %
Unclassified	root	N/A	5.38 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.15 %
Unclassified	root	N/A	5.38 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.77 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.38 %
Unclassified	root	N/A	5.38 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %
Sphingopyxis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.62 %
Unclassified	root	N/A	5.38 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.54 %
Sphingopyxis macrogoltabida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida	0.77 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.77 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10035651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1331	Open in IMG/M
3300001867\|JGI12627J18819_10201750	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300004633\|Ga0066395_10126305	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300005172\|Ga0066683_10677256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300005332\|Ga0066388_105292881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300005332\|Ga0066388_108489843	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005363\|Ga0008090_10065264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300005467\|Ga0070706_101623811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300005518\|Ga0070699_102162922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300005713\|Ga0066905_100912694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300005713\|Ga0066905_102133265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300005713\|Ga0066905_102274675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300005764\|Ga0066903_105658186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300005764\|Ga0066903_105690220	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300005764\|Ga0066903_106651916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300005764\|Ga0066903_106925411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300005764\|Ga0066903_108203645	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005764\|Ga0066903_108416766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300006880\|Ga0075429_101540468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300006904\|Ga0075424_100630452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1145	Open in IMG/M
3300006904\|Ga0075424_102536592	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009012\|Ga0066710_101627813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300009137\|Ga0066709_101701825	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300009147\|Ga0114129_12184754	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010046\|Ga0126384_10251995	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300010046\|Ga0126384_11484923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300010358\|Ga0126370_10026516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3421	Open in IMG/M
3300010358\|Ga0126370_10217662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1456	Open in IMG/M
3300010358\|Ga0126370_10776868	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300010359\|Ga0126376_10687503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300010360\|Ga0126372_10196090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1676	Open in IMG/M
3300010360\|Ga0126372_10686184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	997	Open in IMG/M
3300010360\|Ga0126372_11112954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	809	Open in IMG/M
3300010360\|Ga0126372_12063330	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300010361\|Ga0126378_10429282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1435	Open in IMG/M
3300010361\|Ga0126378_10928040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300010361\|Ga0126378_11503569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300010376\|Ga0126381_103578994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300010398\|Ga0126383_12377938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300010398\|Ga0126383_13696604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300012363\|Ga0137390_10005511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10701	Open in IMG/M
3300012948\|Ga0126375_11771814	Not Available	538	Open in IMG/M
3300012971\|Ga0126369_10950398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	946	Open in IMG/M
3300012971\|Ga0126369_11091663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	887	Open in IMG/M
3300012986\|Ga0164304_10099535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1729	Open in IMG/M
3300015245\|Ga0137409_11008777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300016270\|Ga0182036_10301803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1218	Open in IMG/M
3300016270\|Ga0182036_10507820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	956	Open in IMG/M
3300016319\|Ga0182033_11947234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300016341\|Ga0182035_10790813	Not Available	832	Open in IMG/M
3300016341\|Ga0182035_11833010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300016357\|Ga0182032_11709029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300020581\|Ga0210399_10927885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	705	Open in IMG/M
3300021168\|Ga0210406_10603067	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300021372\|Ga0213877_10042872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1287	Open in IMG/M
3300021560\|Ga0126371_10563813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1288	Open in IMG/M
3300021560\|Ga0126371_11148688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300024288\|Ga0179589_10376011	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300026524\|Ga0209690_1146864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida	872	Open in IMG/M
3300031543\|Ga0318516_10241465	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300031543\|Ga0318516_10463132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	729	Open in IMG/M
3300031545\|Ga0318541_10073862	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300031549\|Ga0318571_10053529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1210	Open in IMG/M
3300031573\|Ga0310915_10439097	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300031573\|Ga0310915_11018064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300031640\|Ga0318555_10473190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300031668\|Ga0318542_10151211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1153	Open in IMG/M
3300031680\|Ga0318574_10346996	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031681\|Ga0318572_10169725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1266	Open in IMG/M
3300031681\|Ga0318572_10254263	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300031719\|Ga0306917_10912267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300031724\|Ga0318500_10406332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	677	Open in IMG/M
3300031736\|Ga0318501_10395268	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300031744\|Ga0306918_10191134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1538	Open in IMG/M
3300031748\|Ga0318492_10103227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1403	Open in IMG/M
3300031748\|Ga0318492_10567269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300031751\|Ga0318494_10589927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300031764\|Ga0318535_10336077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300031765\|Ga0318554_10073060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1903	Open in IMG/M
3300031770\|Ga0318521_10081483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1747	Open in IMG/M
3300031770\|Ga0318521_10875098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300031777\|Ga0318543_10314605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300031780\|Ga0318508_1152258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	656	Open in IMG/M
3300031795\|Ga0318557_10084724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1386	Open in IMG/M
3300031797\|Ga0318550_10437321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300031799\|Ga0318565_10612057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300031821\|Ga0318567_10456308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300031833\|Ga0310917_10061833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2327	Open in IMG/M
3300031833\|Ga0310917_10101712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1850	Open in IMG/M
3300031835\|Ga0318517_10354416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300031860\|Ga0318495_10088953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1385	Open in IMG/M
3300031860\|Ga0318495_10348467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	656	Open in IMG/M
3300031879\|Ga0306919_10367448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1100	Open in IMG/M
3300031890\|Ga0306925_11330125	Not Available	712	Open in IMG/M
3300031890\|Ga0306925_11420896	Not Available	683	Open in IMG/M
3300031890\|Ga0306925_11768820	All Organisms → cellular organisms → Bacteria → Proteobacteria	593	Open in IMG/M
3300031894\|Ga0318522_10245581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300031896\|Ga0318551_10200761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1103	Open in IMG/M
3300031896\|Ga0318551_10592394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300031910\|Ga0306923_10949053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300031910\|Ga0306923_11021591	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031912\|Ga0306921_10210411	All Organisms → cellular organisms → Bacteria → Proteobacteria	2279	Open in IMG/M
3300031941\|Ga0310912_11011132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300031942\|Ga0310916_10400869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300031942\|Ga0310916_10926910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300031945\|Ga0310913_10258062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1225	Open in IMG/M
3300031945\|Ga0310913_10389343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	988	Open in IMG/M
3300031946\|Ga0310910_11367967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031947\|Ga0310909_10282528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1389	Open in IMG/M
3300031954\|Ga0306926_10454311	Not Available	1578	Open in IMG/M
3300032001\|Ga0306922_10142091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2563	Open in IMG/M
3300032009\|Ga0318563_10181318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1134	Open in IMG/M
3300032043\|Ga0318556_10508297	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300032044\|Ga0318558_10102824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1339	Open in IMG/M
3300032044\|Ga0318558_10422065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300032055\|Ga0318575_10335976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300032055\|Ga0318575_10516611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300032060\|Ga0318505_10231701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300032060\|Ga0318505_10489768	Not Available	580	Open in IMG/M
3300032064\|Ga0318510_10243280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	737	Open in IMG/M
3300032067\|Ga0318524_10541638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300032076\|Ga0306924_11655207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300032076\|Ga0306924_11659747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300032076\|Ga0306924_12519254	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300032089\|Ga0318525_10295044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M
3300032089\|Ga0318525_10449260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	660	Open in IMG/M
3300032090\|Ga0318518_10092097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1504	Open in IMG/M
3300032090\|Ga0318518_10280036	Not Available	856	Open in IMG/M
3300032180\|Ga0307471_102695585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300033290\|Ga0318519_10417607	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.92%
Host-Associated	Host-Associated	3.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.92%
Plants	Host-Associated → Plants	3.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.08%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.38%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.08%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.54%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.23%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.77%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100356512	3300000597	Forest Soil	VWHEIIDTVMEGPPRTAADEITEYLARHQYDLSPTVRIELERRHVCV*
JGI12627J18819_102017502	3300001867	Forest Soil	IIDTVMEGGPRTAADQITEYLARHQYDLTPAVRIELERRHVCV*
Ga0066395_101263051	3300004633	Tropical Forest Soil	EIMDTVIEGTPRTAADEIAEYLERHQYDLSPALRIELERRNVCV*
Ga0066683_106772562	3300005172	Soil	IDTVIQGPRRTAADEITEYLVRHQYDLSPMLRIELERRHVCV*
Ga0066388_1052928811	3300005332	Tropical Forest Soil	DTVIEGSTRTAADEIAEYLARHPYDLSPTLRIELERRHVCL*
Ga0066388_1084898431	3300005332	Tropical Forest Soil	HEIIDTVIEGHPRTAADEITEYLARHQYDLSPTLRIELERRHVCV*
Ga0008090_100652642	3300005363	Tropical Rainforest Soil	NRSVWRQIIDTVIEGPPRTAADEIDEYLARHQHDLSPTLRIELERRHVCL*
Ga0070706_1016238112	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RSVWHEIIDTVIEGPPRTAADKIAEYLARHQYDVSPMLRIELERRHVCV*
Ga0070699_1021629222	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TVIEGTPRTAADKIAEYLERHQYDLSPGFRIELERRHVCV*
Ga0066905_1009126941	3300005713	Tropical Forest Soil	EIMDTVIEGTPRTAADEIAEYLERHQYDLSPALRIELERRHVCV*
Ga0066905_1021332651	3300005713	Tropical Forest Soil	VIEGSPRTAADKIAEYLARHQYDLSPTLRIELERRHVCV*
Ga0066905_1022746751	3300005713	Tropical Forest Soil	MEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL*
Ga0066903_1056581861	3300005764	Tropical Forest Soil	IIDTVIEGPRRTAADEIAEYLAEHQYDLSPMLRIELERRHVCV*
Ga0066903_1056902201	3300005764	Tropical Forest Soil	GRSRSVWHEIIDTVIEGPPRTAVDEIAEYLARHQYDLSPTLRIELERRHVCL*
Ga0066903_1066519161	3300005764	Tropical Forest Soil	WHEIIDTVMEGPPRTAADEIAEYLARHQYDLSPTLRTELEGRHVCL*
Ga0066903_1069254111	3300005764	Tropical Forest Soil	EIIDTVIEGPPRTAVDEIAEYLARHQYDLSPTLRIELERRHVCL*
Ga0066903_1082036451	3300005764	Tropical Forest Soil	WHEIIDTVMEGPPRTAADEIAEYLARHQYDLSPTLRTELERRHVCL*
Ga0066903_1084167661	3300005764	Tropical Forest Soil	RSVWREIIDAVMEGYPRTAADEIDEYLAGHQYDLSPTLRIELERRHVCV*
Ga0075429_1015404682	3300006880	Populus Rhizosphere	PRTGADEMTAYLARHHYDFAPTLRIDLERRHVCV*
Ga0075424_1006304523	3300006904	Populus Rhizosphere	DAVMQGGPRTAADQITEYLARHQYDLTPTLRIELERRHVCV*
Ga0075424_1025365921	3300006904	Populus Rhizosphere	GPRTAADQITEYLARHQYDLTPAVRIELERRHVCV*
Ga0066710_1016278132	3300009012	Grasslands Soil	VTGSRSLWHEIIDTVIQGPRRTAADEITEYLVRHQYDLSPMLRIELERRHVCV
Ga0066709_1017018251	3300009137	Grasslands Soil	EIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL*
Ga0114129_121847541	3300009147	Populus Rhizosphere	GGPRTAADQITEYLARHQYDLTPAVRIELERRHVCV*
Ga0126384_102519952	3300010046	Tropical Forest Soil	DTVIEGTPRTAADEIAEYLERHQYDLSPALRIELERRHVCV*
Ga0126384_114849232	3300010046	Tropical Forest Soil	IIDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL*
Ga0126370_100265164	3300010358	Tropical Forest Soil	GTVIEGPRTAADEIDEYLAQHQYDLSPMLRTELERRHVCV*
Ga0126370_102176623	3300010358	Tropical Forest Soil	GRSRSVWREIIDTVIEGPTPTAADEIDEYLARHQYDLSPTLRIELERRHVCV*
Ga0126370_107768681	3300010358	Tropical Forest Soil	RPLWREIIDTVMQGGPRTAADQITEYLARHQYDLAPAVRIELERRHMCV*
Ga0126376_106875031	3300010359	Tropical Forest Soil	TPTAADEIDEYLARHQYDLSPTLRIELERRHVCV*
Ga0126372_101960901	3300010360	Tropical Forest Soil	HEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL*
Ga0126372_106861841	3300010360	Tropical Forest Soil	IMDTVIEGTPRTAADEIAEYLERHQYDLSPALRIELERRHVCL*
Ga0126372_111129542	3300010360	Tropical Forest Soil	RPEGPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV*
Ga0126372_120633302	3300010360	Tropical Forest Soil	EGGPRTAADQVAEYLARHQYDLVPAVRIELERRHVCV*
Ga0126378_104292821	3300010361	Tropical Forest Soil	SVWHEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL*
Ga0126378_109280401	3300010361	Tropical Forest Soil	PRTAANEIAEYLERHQYDLSPALRIELERRHVCV*
Ga0126378_115035693	3300010361	Tropical Forest Soil	VWHEIMDTVIEGTPRTAADEIAEYLERHQYDLSPALRIELERRHVCL*
Ga0126381_1035789941	3300010376	Tropical Forest Soil	TVIEGPPRTAANEIAEYLERHQYDLSPALRIEPERRHLCV*
Ga0126383_123779382	3300010398	Tropical Forest Soil	VMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL*
Ga0126383_136966041	3300010398	Tropical Forest Soil	VWHEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRSELERRHVCP*
Ga0137390_100055119	3300012363	Vadose Zone Soil	MAGRNRPLWRQIIDTVIEGPPRTAADEIDEYLTRHQHDLSPALRMTLERRWAGL*
Ga0126375_117718142	3300012948	Tropical Forest Soil	LWGAADQSGAIIDTVIEGPTPTAADEIDEYLARHQYDLSPTLRIELERRHVCL*
Ga0126369_109503981	3300012971	Tropical Forest Soil	GGPRTAADQITEYLARHQYDLAPAVRIELERRHMCV*
Ga0126369_110916632	3300012971	Tropical Forest Soil	WHEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRSELERRHVCL*
Ga0164304_100995351	3300012986	Soil	FWREIIDTVMEGAPRTAADQIAEYLARHQYDLAPAVRIELERRHVCV*
Ga0137409_110087772	3300015245	Vadose Zone Soil	GRKQSFWRQIIDAVVEGAPRTAADQIAEYLARHQYDLAPALRINLERRHVCV*
Ga0182036_103018032	3300016270	Soil	PEGPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV
Ga0182036_105078201	3300016270	Soil	VIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0182033_119472341	3300016319	Soil	VGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0182035_107908132	3300016341	Soil	VIEGPPRTATDEIAEYLARHPYDLSPTLRIELERRHVCL
Ga0182035_118330101	3300016341	Soil	EGPARTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0182032_117090291	3300016357	Soil	SRSIWHEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRTELEGRHVYL
Ga0210399_109278852	3300020581	Soil	VEGNRSLWRQTIDTVIGEPPRTAAGQIAEYLARHQYDLPPTLRIELEQRHVCV
Ga0210406_106030671	3300021168	Soil	IMGGAPRTAADQIAEYLARHQYDLAPAVRIELERRHVCV
Ga0213877_100428721	3300021372	Bulk Soil	IDTVMEGAPRTAADEITEYLARHPYDLSPTLRIELERRHVCV
Ga0126371_105638131	3300021560	Tropical Forest Soil	IIDTVIEGPRRTAADEIAEYLAEHQYDLSPMLRIELERRHVCV
Ga0126371_111486881	3300021560	Tropical Forest Soil	PPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0179589_103760112	3300024288	Vadose Zone Soil	MGGAPRTAADQIAEYLARHQYDLAPAVRIEFERRHVCV
Ga0209690_11468641	3300026524	Soil	IDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318516_102414651	3300031543	Soil	VIEGPPRTAADEIDEYLARHQHDLSPTLRIELERRHVCL
Ga0318516_104631321	3300031543	Soil	VIEGSPRTAANEIAEYLERHQYDLSPALRTELERRHVCV
Ga0318541_100738621	3300031545	Soil	DTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318571_100535291	3300031549	Soil	GPARTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0310915_104390972	3300031573	Soil	IIDTVIEGPPRTAADEIDEYLARHQHDLSPTLRIELERRHVCL
Ga0310915_110180641	3300031573	Soil	GPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318555_104731901	3300031640	Soil	MEGPARTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318542_101512113	3300031668	Soil	VWHEIIDTAIEGPPRTAAEQIANYLARHQYDLSPTLRIELERRHVCV
Ga0318574_103469961	3300031680	Soil	ARSRSVWHEIIDTAIEGPPRTAAEQIANYLARHQYDLSPTLRIELEQRHVCV
Ga0318572_101697251	3300031681	Soil	GRNRSVWREIIDTVMEGSPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318572_102542632	3300031681	Soil	NRSVWRQIIDTVIEGPPRTAADEIDEYLARHQHDLSPTLRIELERRHVCL
Ga0306917_109122671	3300031719	Soil	RSVWREIMDTVIEGTPRTAAREIAEYLERHQYDLSPALRIELERRHVCV
Ga0318500_104063323	3300031724	Soil	IIDTVIEGSPRTAANEIAEYLEQHQYDLSPAIRIELERRHVCV
Ga0318501_103952683	3300031736	Soil	VMEGPPRTAVDEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0306918_101911341	3300031744	Soil	NRSVWREIIDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318492_101032272	3300031748	Soil	IVTGSRSLWHEIIDTVIEGPRRTAADEIAEYLAEHQYDLSPTLRTELERRHVGV
Ga0318492_105672692	3300031748	Soil	VMEGPPRTGADEIAAYLARHQYDFEPALRTDLERRHVCV
Ga0318494_105899272	3300031751	Soil	IQIRPEGPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV
Ga0318535_103360771	3300031764	Soil	IEGTPRTAADEIVEYLERHQYDLSPALRIELERRRVCV
Ga0318554_100730603	3300031765	Soil	DTVIEGPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV
Ga0318521_100814833	3300031770	Soil	IIDTVMEGPARTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318521_108750982	3300031770	Soil	VIEGPRRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0318543_103146051	3300031777	Soil	PHEIIDTVIEGSPRTAANEIAEYLERHQYDLSPAIRIELERRHVCV
Ga0318508_11522583	3300031780	Soil	EGSPRTAANEIAEYLEQHQYDLSPAIRIELERRHVCV
Ga0318557_100847241	3300031795	Soil	RSVWREIIDTVMEGSPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318550_104373212	3300031797	Soil	TVIEGPRTAEDEITEYLARHQYDLSPMLRIELERRHVCV
Ga0318565_106120571	3300031799	Soil	AARSRSVWREIIETVIEGPRTAEDEITEYLARHQYDLSPMLRIELERRHVCV
Ga0318567_104563081	3300031821	Soil	IDTVIEGPRRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0310917_100618334	3300031833	Soil	TVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0310917_101017123	3300031833	Soil	RSRSVWHEIMDTVIEGTPRTAADEIVEYLERHQYDLSPALRIELERRRVCV
Ga0318517_103544161	3300031835	Soil	HEIIDTVIEGPQRTAADEITEYLARHQYDLSPTLRIELERRHVGL
Ga0318495_100889531	3300031860	Soil	VWHEIIDTMIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV
Ga0318495_103484671	3300031860	Soil	RSVWHEIIDTVIEGPPRTTADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0306919_103674481	3300031879	Soil	GRNRLVWREIIDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0306925_113301251	3300031890	Soil	VIEGPPRTAVDEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0306925_114208961	3300031890	Soil	EIIDTVIEGPTPTAADEIDEYLARHQYDLSPTLRIELERRHVCV
Ga0306925_117688202	3300031890	Soil	IEGPLRTAADEIAEYLARHQYDLSPTLRSELERRHVCL
Ga0318522_102455812	3300031894	Soil	LWRQIIDTVMEGPPRTGADEIAAYLARHQYDFEPALRTDLERRHVCV
Ga0318551_102007612	3300031896	Soil	REIIDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318551_105923942	3300031896	Soil	IIETVIEGPARTAADEIAEYLARHQYDLSPMLRIELERRHVCL
Ga0306923_109490532	3300031910	Soil	RLVWREIIDTVMEGPPRTASDEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0306923_110215912	3300031910	Soil	IIDTVIEGPPRTAADEVSEYLAQHQYDLSPTLRIELERRHVCL
Ga0306921_102104111	3300031912	Soil	EIIETVMEGPPRTAADEITNYLARYQYDLSPTLRTELERRHVCL
Ga0310912_110111322	3300031941	Soil	IVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0310916_104008691	3300031942	Soil	LIEGPPRTAADEIDEYLARHQYDLSPPLRIELERRHVCL
Ga0310916_109269102	3300031942	Soil	VDTVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0310913_102580621	3300031945	Soil	GRSRSVWREIIDTVMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0310913_103893433	3300031945	Soil	VIEGPPRTAADEIAEYLARHQYDLSPTLRSELERRHVCL
Ga0310910_113679671	3300031946	Soil	IIDTVMEGPPRTGADEIAAYLARHQYDFEPALRTDLERRHVCV
Ga0310909_102825284	3300031947	Soil	MEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0306926_104543113	3300031954	Soil	WREIIDTVIEGPTPTAADEIDEYLARHQYDLSPTLRIELERRHVCV
Ga0306922_101420915	3300032001	Soil	DTVIEGSPRTAANEIAEYLERHQYDLSPALRTELERRHVCV
Ga0318563_101813181	3300032009	Soil	VIEGTPRTAADEIAEYLERHQYDLSPALRIELERRNVCV
Ga0318556_105082971	3300032043	Soil	VWHEIIDTVTGGPPRTAADEIAEYLARHQYDLSPMLRIELERRHVCL
Ga0318558_101028242	3300032044	Soil	RSVWREIIDTVIEGPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV
Ga0318558_104220651	3300032044	Soil	VIDTVIEGPRRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0318575_103359762	3300032055	Soil	HEIIDTVIEGPLRTAADEIAEYLARHQYDLSPTLRSELERRHVCL
Ga0318575_105166111	3300032055	Soil	EIIETVIEGPRTAEDEITKYLARHQYDLSPMLRIELERRHVCV
Ga0318505_102317011	3300032060	Soil	WQEIIDTVIEGPPRTAADEIAEYLSRHQYDLSPTLRIELERRHVCV
Ga0318505_104897682	3300032060	Soil	IEGPQRTAADEITEYLARHQYDLSPTLRIELERRHVGL
Ga0318510_102432801	3300032064	Soil	WHEIIDTVIEGSPRTAANEIAEYLERHQYDLSPALRTELERRHVCV
Ga0318524_105416381	3300032067	Soil	PRRTAADEIAEYLARHQYDLSPTLRIELERRHVCL
Ga0306924_116552071	3300032076	Soil	RNRSVWREIIETVMEGPPRTAADEITNYLARHQYDLSPTLRIELERRHVCL
Ga0306924_116597472	3300032076	Soil	TVIEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0306924_125192542	3300032076	Soil	EIIDTVIEEPPRTAADEIAEYLARHQYDLSPTLRSELERRHVCL
Ga0318525_102950442	3300032089	Soil	LWHEIIDTVIEGPPRTAADEITEYLARHQYDLSPTLRSELERRHVCL
Ga0318525_104492603	3300032089	Soil	LWHEIIDTVIEGSPRTAANEIAEYLEQHQYDLSPAIRIELERRHVCV
Ga0318518_100920971	3300032090	Soil	VWREIIDTVMEGPARTAADEITEYLARHQYDLSPTLRIELERRHVCL
Ga0318518_102800362	3300032090	Soil	RSVWREIIETVIEGPRTAEDEITKYLARHQYDLSPMLRIELERRHVCV
Ga0307471_1026955851	3300032180	Hardwood Forest Soil	RSVWHEIIETVIEGPPRTAADEIAEYLARHQYDLSPTLRIELERRHVCV
Ga0318519_104176072	3300033290	Soil	VMEGPPRTAADEITEYLARHQYDLSPTLRIELERRHVCL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062508

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences