Metagenome / Metatranscriptome Family F062239

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062239
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	61 residues
Representative Sequence	MNRQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA
Number of Associated Samples	70
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	40.46 %
% of genes near scaffold ends (potentially truncated)	60.31 %
% of genes from short scaffolds (< 2000 bps)	99.24 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (78.626 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (64.122 % of family members)
Environment Ontology (ENVO)	Unclassified (70.992 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.95% β-sheet: 0.00% Coil/Unstructured: 86.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13359	DDE_Tnp_4	2.70
PF08443	RimK	2.70
PF13683	rve_3	1.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
All Organisms	root	All Organisms	21.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
cellular organisms	root	All Organisms → cellular organisms	20.61 %
Viruses	superkingdom	All Organisms → Viruses	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	19.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	15.27 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	15.27 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.27 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.27 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.27 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.27 %
Geodermatophilus chilensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10143794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1639	Open in IMG/M
3300001686\|C688J18823_10525250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	758	Open in IMG/M
3300002568\|C688J35102_118612381	Not Available	577	Open in IMG/M
3300002568\|C688J35102_120486681	All Organisms → Viruses → Predicted Viral	1109	Open in IMG/M
3300003162\|Ga0006778J45830_1017879	Not Available	577	Open in IMG/M
3300003163\|Ga0006759J45824_1006627	Not Available	588	Open in IMG/M
3300003308\|Ga0006777J48905_1018802	Not Available	645	Open in IMG/M
3300003308\|Ga0006777J48905_1035388	Not Available	610	Open in IMG/M
3300003544\|Ga0007417J51691_1002478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1175	Open in IMG/M
3300003559\|Ga0007427J51700_134748	Not Available	853	Open in IMG/M
3300003563\|Ga0007430J51106_104378	Not Available	671	Open in IMG/M
3300003571\|Ga0007419J51692_1008278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	839	Open in IMG/M
3300003579\|Ga0007429J51699_1004881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	827	Open in IMG/M
3300003693\|Ga0032354_1013468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1025	Open in IMG/M
3300003693\|Ga0032354_1078835	Not Available	605	Open in IMG/M
3300003693\|Ga0032354_1078835	Not Available	605	Open in IMG/M
3300003840\|Ga0032355_1167281	Not Available	502	Open in IMG/M
3300004081\|Ga0063454_101754555	Not Available	542	Open in IMG/M
3300004081\|Ga0063454_101814415	Not Available	534	Open in IMG/M
3300004153\|Ga0063455_100468283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	772	Open in IMG/M
3300004153\|Ga0063455_101018135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	602	Open in IMG/M
3300004803\|Ga0058862_10106516	Not Available	856	Open in IMG/M
3300009789\|Ga0126307_10860788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	732	Open in IMG/M
3300010065\|Ga0127435_129284	Not Available	533	Open in IMG/M
3300010065\|Ga0127435_151885	Not Available	1344	Open in IMG/M
3300010065\|Ga0127435_151885	Not Available	1344	Open in IMG/M
3300010065\|Ga0127435_151885	Not Available	1344	Open in IMG/M
3300010068\|Ga0127442_147933	Not Available	530	Open in IMG/M
3300010070\|Ga0127441_100531	Not Available	615	Open in IMG/M
3300010070\|Ga0127441_105111	Not Available	637	Open in IMG/M
3300010070\|Ga0127441_133486	Not Available	631	Open in IMG/M
3300010070\|Ga0127441_133486	Not Available	631	Open in IMG/M
3300010071\|Ga0127477_101101	Not Available	512	Open in IMG/M
3300010071\|Ga0127477_126696	Not Available	594	Open in IMG/M
3300010071\|Ga0127477_126696	Not Available	594	Open in IMG/M
3300010071\|Ga0127477_152988	Not Available	794	Open in IMG/M
3300010081\|Ga0127457_1035055	Not Available	550	Open in IMG/M
3300010081\|Ga0127457_1053002	Not Available	962	Open in IMG/M
3300010084\|Ga0127461_1022641	Not Available	563	Open in IMG/M
3300010086\|Ga0127496_1065874	Not Available	528	Open in IMG/M
3300010089\|Ga0127454_1038699	Not Available	740	Open in IMG/M
3300010097\|Ga0127501_1009442	Not Available	778	Open in IMG/M
3300010097\|Ga0127501_1009442	Not Available	778	Open in IMG/M
3300010100\|Ga0127440_1004338	Not Available	750	Open in IMG/M
3300010100\|Ga0127440_1014621	Not Available	971	Open in IMG/M
3300010100\|Ga0127440_1032921	Not Available	679	Open in IMG/M
3300010100\|Ga0127440_1032921	Not Available	679	Open in IMG/M
3300010100\|Ga0127440_1092108	Not Available	616	Open in IMG/M
3300010102\|Ga0127453_1007872	Not Available	674	Open in IMG/M
3300010102\|Ga0127453_1131257	Not Available	548	Open in IMG/M
3300010106\|Ga0127472_1019207	Not Available	646	Open in IMG/M
3300010106\|Ga0127472_1021894	Not Available	1181	Open in IMG/M
3300010106\|Ga0127472_1048758	Not Available	607	Open in IMG/M
3300010106\|Ga0127472_1048758	Not Available	607	Open in IMG/M
3300010106\|Ga0127472_1078761	Not Available	520	Open in IMG/M
3300010109\|Ga0127497_1010716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	897	Open in IMG/M
3300010109\|Ga0127497_1115615	Not Available	625	Open in IMG/M
3300010112\|Ga0127458_1050559	Not Available	690	Open in IMG/M
3300010113\|Ga0127444_1109400	Not Available	591	Open in IMG/M
3300010115\|Ga0127495_1000114	Not Available	569	Open in IMG/M
3300010119\|Ga0127452_1091744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1255	Open in IMG/M
3300010119\|Ga0127452_1100285	Not Available	527	Open in IMG/M
3300010119\|Ga0127452_1100285	Not Available	527	Open in IMG/M
3300010119\|Ga0127452_1150731	Not Available	571	Open in IMG/M
3300010121\|Ga0127438_1003544	Not Available	609	Open in IMG/M
3300010121\|Ga0127438_1008836	Not Available	696	Open in IMG/M
3300010121\|Ga0127438_1014890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1008	Open in IMG/M
3300010126\|Ga0127482_1083999	Not Available	523	Open in IMG/M
3300010128\|Ga0127486_1044995	Not Available	546	Open in IMG/M
3300010132\|Ga0127455_1101445	Not Available	744	Open in IMG/M
3300010133\|Ga0127459_1012440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	954	Open in IMG/M
3300010133\|Ga0127459_1180117	Not Available	612	Open in IMG/M
3300010140\|Ga0127456_1114626	Not Available	620	Open in IMG/M
3300010140\|Ga0127456_1114626	Not Available	620	Open in IMG/M
3300010141\|Ga0127499_1173908	Not Available	929	Open in IMG/M
3300010141\|Ga0127499_1196849	Not Available	661	Open in IMG/M
3300010146\|Ga0126320_1175857	Not Available	586	Open in IMG/M
3300011332\|Ga0126317_10993993	Not Available	535	Open in IMG/M
3300012212\|Ga0150985_104709471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3792	Open in IMG/M
3300012212\|Ga0150985_109713925	Not Available	733	Open in IMG/M
3300012372\|Ga0134037_1018172	Not Available	632	Open in IMG/M
3300012374\|Ga0134039_1111321	Not Available	522	Open in IMG/M
3300012374\|Ga0134039_1111321	Not Available	522	Open in IMG/M
3300012376\|Ga0134032_1007688	Not Available	509	Open in IMG/M
3300012376\|Ga0134032_1007688	Not Available	509	Open in IMG/M
3300012376\|Ga0134032_1201775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300012379\|Ga0134058_1030613	Not Available	558	Open in IMG/M
3300012379\|Ga0134058_1066022	Not Available	505	Open in IMG/M
3300012379\|Ga0134058_1066022	Not Available	505	Open in IMG/M
3300012379\|Ga0134058_1127892	Not Available	507	Open in IMG/M
3300012379\|Ga0134058_1127892	Not Available	507	Open in IMG/M
3300012382\|Ga0134038_1233528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	555	Open in IMG/M
3300012382\|Ga0134038_1247417	Not Available	548	Open in IMG/M
3300012382\|Ga0134038_1247417	Not Available	548	Open in IMG/M
3300012385\|Ga0134023_1183035	Not Available	787	Open in IMG/M
3300012390\|Ga0134054_1118061	Not Available	568	Open in IMG/M
3300012391\|Ga0134035_1140776	Not Available	721	Open in IMG/M
3300012391\|Ga0134035_1184090	Not Available	500	Open in IMG/M
3300012393\|Ga0134052_1219132	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300012393\|Ga0134052_1324393	Not Available	544	Open in IMG/M
3300012393\|Ga0134052_1324393	Not Available	544	Open in IMG/M
3300012396\|Ga0134057_1007150	Not Available	933	Open in IMG/M
3300012396\|Ga0134057_1286233	Not Available	972	Open in IMG/M
3300012397\|Ga0134056_1025872	Not Available	913	Open in IMG/M
3300012402\|Ga0134059_1123797	Not Available	626	Open in IMG/M
3300012402\|Ga0134059_1161219	Not Available	828	Open in IMG/M
3300012405\|Ga0134041_1132284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	915	Open in IMG/M
3300012405\|Ga0134041_1218109	Not Available	636	Open in IMG/M
3300012406\|Ga0134053_1402881	Not Available	748	Open in IMG/M
3300012410\|Ga0134060_1193412	Not Available	856	Open in IMG/M
3300012410\|Ga0134060_1401500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1365	Open in IMG/M
3300012469\|Ga0150984_116160990	Not Available	630	Open in IMG/M
3300013062\|Ga0154010_188819	Not Available	522	Open in IMG/M
3300020069\|Ga0197907_10202466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1119	Open in IMG/M
3300020069\|Ga0197907_10333924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1434	Open in IMG/M
3300020069\|Ga0197907_10333924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1434	Open in IMG/M
3300020069\|Ga0197907_10333924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1434	Open in IMG/M
3300020069\|Ga0197907_10432371	Not Available	534	Open in IMG/M
3300020069\|Ga0197907_10432371	Not Available	534	Open in IMG/M
3300020069\|Ga0197907_11323709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1404	Open in IMG/M
3300020070\|Ga0206356_10359812	Not Available	546	Open in IMG/M
3300020070\|Ga0206356_10898129	Not Available	533	Open in IMG/M
3300020075\|Ga0206349_1123829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	768	Open in IMG/M
3300020077\|Ga0206351_10757622	Not Available	850	Open in IMG/M
3300020080\|Ga0206350_10054410	Not Available	922	Open in IMG/M
3300020081\|Ga0206354_11026047	Not Available	818	Open in IMG/M
3300020082\|Ga0206353_10128017	Not Available	712	Open in IMG/M
3300031824\|Ga0307413_10616319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	890	Open in IMG/M
3300031903\|Ga0307407_10530762	Not Available	867	Open in IMG/M
3300031903\|Ga0307407_10530762	Not Available	867	Open in IMG/M
3300032002\|Ga0307416_101036426	All Organisms → cellular organisms → Bacteria → Terrabacteria group	924	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.97%
Host-Associated	Host-Associated	16.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.44%
Plants	Host-Associated → Plants	15.27%
Aquatic	Environmental → Aquatic	1.53%
Human	Host-Associated → Human	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.34%
Freshwater	Environmental → Aquatic → Freshwater	1.53%
Digestive System	Host-Associated → Human → Digestive System	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.87%
Loam	Environmental → Terrestrial → Soil → Loam	6.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.05%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.53%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	76.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.05%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.53%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.76%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	64.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	11.45%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.11%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.05%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.53%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.76%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003162	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003163	Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003308	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003544	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003559	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_43 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003563	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_46 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003571	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_35 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003579	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003693	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300003840	Avena fatua rhizosphere microbial communities from Hopland, California, USA - H2_Bulk_Litter_50 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010065	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010068	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010070	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010071	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010081	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010084	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010086	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010089	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010097	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010102	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010113	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010115	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010121	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012374	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012382	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012385	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013062	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_101437942	3300001686	Soil	MNSELPLVVELAEPKLIAGEVDIQLSSQTFTNGRSKSLNVILGVLSDLVQDVTIDDVVA*
C688J18823_105252502	3300001686	Soil	ARQDRSIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSQTHTRQRSATFNVIGVLSDLVNDVAVEDVIA*
C688J35102_1186123811	3300002568	Soil	MNSEELPLVVEQAEPKLIDGEVDIQLSSQTATTQKSNTFNNGLLSDLANDVAVDDVIA*
C688J35102_1204866811	3300002568	Soil	MNSELPLVVELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA*
Ga0006778J45830_10178792	3300003162	Avena Fatua Rhizosphere	VVELAEPKLIAGEVDIQLSSQTHTRQRSATFNVIGVLSDLVNDVAVEDVIA*
Ga0006759J45824_10066271	3300003163	Avena Fatua Rhizosphere	DRSIEGDPMNSEELPLVVEQAEPKLIDGEVDIQLSSQTATTQKSNTFNGIGVLSDLANDVAVDDVIA*
Ga0006777J48905_10188022	3300003308	Avena Fatua Rhizosphere	MKRELPLVVELAEPKLIAGEVDIQLSSQTPSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0006777J48905_10353882	3300003308	Avena Fatua Rhizosphere	MNTQLPLVVALAEPKMIAGEVDIQLSSKTSTSQKSNTFNVIGVLSDLVNDVAVDDVIA*
Ga0007417J51691_10024781	3300003544	Avena Fatua Rhizosphere	MNSEELPLVVEQAEPKLIDGEVDIQLSSQTATTQKSNTFNGIGVLSDLVNDVAVDDVIA*
Ga0007427J51700_1347481	3300003559	Avena Fatua Rhizosphere	ENPMKRELPLVVELAEPKLIAGEVDIQLSSQTSSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0007430J51106_1043781	3300003563	Avena Fatua Rhizosphere	MKRELPLVVELAEPKLIAGEVDIQLSSQTFTNGRSKSLNVILGVLSDLVQDVTIDDVVA*
Ga0007419J51692_10082781	3300003571	Avena Fatua Rhizosphere	PMNSEELPLVVEQAEPKLIDGEVDIQLSSQTATTQKSNTFNNGLLSDLANDVAVDDVIA*
Ga0007429J51699_10048811	3300003579	Avena Fatua Rhizosphere	RDPLDPRLSRARQDRSIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA*
Ga0032354_10134681	3300003693	Avena Fatua Rhizosphere	DRSIEGDPMNSEELPLVVEQAEPKLIDGEVDIQLSSQTTTTQKSNTFNGIGVLSDLVNDVAVDDVIA*
Ga0032354_10788351	3300003693	Avena Fatua Rhizosphere	MKRELPLVVELAEPKLIAGEVDIQLSSQTASGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0032354_10788352	3300003693	Avena Fatua Rhizosphere	MKRELPLVVALAEPKLIAGEVDIQLSSQTHSGGKSNTLNAVGVLSDLVNDVTVDDVIA*
Ga0032355_11672811	3300003840	Avena Fatua Rhizosphere	GEVDIQLSSQTFTNGRSKSLNVILGVLSDLVQDVTIDDVVA*
Ga0063454_1017545551	3300004081	Soil	PRLSRARQDRSIEGDPMNSEELPLVVEQAEPKLIDGEVDIQLSSQTATTQKSNTFNNGLLSDLANDVAVDDVIA*
Ga0063454_1018144151	3300004081	Soil	ELAEPKLIAGEVDIQLSSQTHSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0063455_1004682833	3300004153	Soil	PMNSELPLVVELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA*
Ga0063455_1010181352	3300004153	Soil	LAEPKLIAGEVDIQLSSQTFTNGRSKSLNVILGVLSDLVQDVTIDDVVA*
Ga0058862_101065162	3300004803	Host-Associated	MKRDLPLVVELAEPKLIDGEVDIQLSSCTSSGGKSNTFNFIGVLSDLVNDVTVDDVIA*
Ga0126307_108607882	3300009789	Serpentine Soil	MNSELPLVVELAEPKLIAGEVDIQLSSATQTTQKSNTFNAIGVLSDLVNDVAVDDVIA*
Ga0127435_1292842	3300010065	Grasslands Soil	SIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSQTSSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0127435_1518852	3300010065	Grasslands Soil	MNTQLPLVVALAEPKLIDGEVDIQLSSRTTTNQKSGTFNVVGVLSDLVGDVAVDDVIA*
Ga0127435_1518853	3300010065	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSRTCTNQKSGTFNAVGLLSDLVGDIAVDDVIA*
Ga0127435_1518854	3300010065	Grasslands Soil	PMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127442_1479332	3300010068	Grasslands Soil	NTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127441_1005311	3300010070	Grasslands Soil	RSIEGDPMNSEELPLVVEQAEPKLIEGEVDIQLSSATNSTQKSNTFNGIGVLSDLVNDVAVDDVIA*
Ga0127441_1051113	3300010070	Grasslands Soil	GDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127441_1334861	3300010070	Grasslands Soil	MKRELPLVVALAEPKLIAGEVDIQLSSQTHSGGKSNTLNAVGVLSDLVNDVTVDDVIA
Ga0127441_1334862	3300010070	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSQTSSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0127477_1011011	3300010071	Grasslands Soil	PMKRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTLNVIGVLSDLVNDVTVDDVIA*
Ga0127477_1266961	3300010071	Grasslands Soil	QLPLVVALAEPKLIAGEVDIQLSSRTTTHQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127477_1266962	3300010071	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSRTCTNQKSGTFNAVGVLSDLVGDVAVDDVIA*
Ga0127477_1529881	3300010071	Grasslands Soil	RTPDEGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127457_10350551	3300010081	Grasslands Soil	SIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA*
Ga0127457_10530023	3300010081	Grasslands Soil	MNAQLPLVVALAEPKMIAGEVDIALSSQTHTRQKSKTFNLIGVLSDLVSDVAVDDVIA*
Ga0127461_10226411	3300010084	Grasslands Soil	MNTQPPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127496_10658741	3300010086	Grasslands Soil	KIREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTLNVIGVLSDLVNDVTVDDVIA*
Ga0127454_10386991	3300010089	Grasslands Soil	QLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127501_10094421	3300010097	Grasslands Soil	MNTQLPLVVALAEPKLIDGEVDIQLSSRTTTNQKSGTFNAVGVLSDLVGDVAVDDVIA*
Ga0127501_10094423	3300010097	Grasslands Soil	GDPITTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127440_10043381	3300010100	Grasslands Soil	KDLRRETMNTQLPLVVALAEPKMIAGEVDIQLSSQTSTRQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0127440_10146214	3300010100	Grasslands Soil	MNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127440_10329211	3300010100	Grasslands Soil	RRENPMKRELPLVVELAEPKMVAGEVDIQLSSQTHSGGKSNTLNFIGVLSDLVNDVTVDDVIA*
Ga0127440_10329212	3300010100	Grasslands Soil	MKRELPLVVELAEPKMVAGEVEIQLSSCTSSGGKSNTLNVVGVLSDLVNDVTVDDVIA*
Ga0127440_10921081	3300010100	Grasslands Soil	TQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127453_10078721	3300010102	Grasslands Soil	MNTQLPLVVALAEPKLIDGEVDIQLSSRTTTNQKSGTFNAVGVLSDLVGDV
Ga0127453_11312572	3300010102	Grasslands Soil	GDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTHQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127472_10192071	3300010106	Grasslands Soil	DEGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127472_10218944	3300010106	Grasslands Soil	DEGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127472_10487582	3300010106	Grasslands Soil	MNTQLPLVVALAEPKLIAGEVDIALSSKTSTRQKSKTFNLIGVLSDLVSDVAVDDVIA*
Ga0127472_10487583	3300010106	Grasslands Soil	GDPMNDQLPLVVELAAPKLIAGEVDIQLSSRTTTNQKSGTFNGLGILSDLVGDVAVDDVIA*
Ga0127472_10787612	3300010106	Grasslands Soil	MKRELPLVVELAEPKLIAGDVDIQLSSQTCTSQKSNTFSVAGVLSDVAADVAVDDVIA*
Ga0127497_10107161	3300010109	Grasslands Soil	IVQGKIREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTLNVIGVLSDLVNDVTVDDVIA*
Ga0127497_11156151	3300010109	Grasslands Soil	LVVALAEPKMIAGEVDIQLSSQTSTRQKSKTFNVIGVLSDLVNDVAVDDVIA*
Ga0127458_10505591	3300010112	Grasslands Soil	LPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127444_11094002	3300010113	Grasslands Soil	KDLRRETMNTQLPLVVALAEPKMIAGEVDIQLSSQTSTRQKSKTFNVIGVLSDLVNDVAVDDVIA*
Ga0127495_10001142	3300010115	Grasslands Soil	MIKKTQLPLTLELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA
Ga0127452_10917441	3300010119	Grasslands Soil	VQGKIREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0127452_11002851	3300010119	Grasslands Soil	MNSEELPLVVEQAEPKLIEGEVDIQLSSATNSTQKSNTFNGIGVLSDLVNDVAVDDVIA*
Ga0127452_11002852	3300010119	Grasslands Soil	KIREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTASGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0127452_11507312	3300010119	Grasslands Soil	GGKPMKPALPLVVELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA*
Ga0127438_10035441	3300010121	Grasslands Soil	GDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127438_10088361	3300010121	Grasslands Soil	RSHRSRKDLRRETMNAQLPLVVALAEPKMIAGEVDIQLSSQTSTRQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0127438_10148901	3300010121	Grasslands Soil	MKTELPLVVELAEPKLIAGEVDIQLSSQTHTRQRSTTFNVIGVLSDLVNDVAVEDVIA*
Ga0127482_10839991	3300010126	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQMSSRTCTNQKSGTFNAVGVLSDLVGDVAVDDVIA*
Ga0127486_10449952	3300010128	Grasslands Soil	LQGKDLRREPMNAQLPLVVALAEPKLIAGEVDIALSSRTHTRQKSKTFNLIGVLSDLVSDVAVDDVIA*
Ga0127455_11014452	3300010132	Grasslands Soil	GHPVGTDAAPTENLRRKLMKSQLPLVLELAEAKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127459_10124401	3300010133	Grasslands Soil	IVQGKIREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0127459_11801171	3300010133	Grasslands Soil	EGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127456_11146261	3300010140	Grasslands Soil	MYTQLPLVVALAEPKMIAGEVDIQLSSRTCTNQKSGTFNAVGVLSDLVGDVAVDDVIA*
Ga0127456_11146262	3300010140	Grasslands Soil	MNRQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0127499_11739083	3300010141	Grasslands Soil	MNPELPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0127499_11968492	3300010141	Grasslands Soil	IEGDPMNSELPLVVELAEPKLIAGEVDIQLSSQTHTRQRSATFNVIGVLSDLVNDVPVEDVIA*
Ga0126320_11758572	3300010146	Soil	DRSIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSQTASFGKSNTTNLIGVLSDLVNDVTVDDVIA*
Ga0126317_109939931	3300011332	Soil	RSIEGDPMNSELPLVVEQAEPKLIAGEVDIQLSSQTATNQESSTFNGIGVLSDLVNDVAVDDVIA*
Ga0150985_1047094714	3300012212	Avena Fatua Rhizosphere	EPMNAQLPLVVALAEPKLIAGEVDIALSSKTHTRQKSKTFNVIGVLSDLVSDVAVDDVIA
Ga0150985_1097139251	3300012212	Avena Fatua Rhizosphere	EEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTASGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0134037_10181721	3300012372	Grasslands Soil	LLRTPDEGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTHQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0134039_11113211	3300012374	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSQTSTRQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0134039_11113212	3300012374	Grasslands Soil	LVVALAEPKMIAGEVDIQLSSKTSTRQKSNTFNVIGVLSDLVNDVAVDDVIA*
Ga0134032_10076881	3300012376	Grasslands Soil	KIREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTSSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0134032_10076882	3300012376	Grasslands Soil	MKRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTLNVIGVLSDLVNDVTVDDVIA*
Ga0134032_12017752	3300012376	Grasslands Soil	SIKGDPMNSELPLVVELAEPKLIAGEVDIQLSSQTHTRQRSTTFNVIGVLSDLVNDVAVEDVIA*
Ga0134058_10306131	3300012379	Grasslands Soil	DLRRETMNTQLPLVVALAEPKMIAGEVDIQLSSKTSTRQKSNTFNVIGVLSDLVNDVAVDDVIA*
Ga0134058_10660221	3300012379	Grasslands Soil	MNAQLPLVVALAEPKLIAGEVDIALSSQTHTRQKSKTFNLIGVLSDLVSDVAVDDVIA*
Ga0134058_10660222	3300012379	Grasslands Soil	MNTQLPLVVALAEPKLIAGEVDIALSSKTHTRQKSSTFNLVGVLSDIAADVAVDDVIA*
Ga0134058_11278921	3300012379	Grasslands Soil	TAPRRRTGQPKLIAGEVDIQLSSRTTTNQKSGTFNLIGVLSDLVGDVAVDDVIA*
Ga0134058_11278922	3300012379	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSRTTTNQKSGTFNAVGVLSDLVGDVAVDDVIA*
Ga0134038_12335281	3300012382	Grasslands Soil	DRSIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSQTHTRQRSTTFNVIGVLSDLVNDVAVEDVIA*
Ga0134038_12474171	3300012382	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSKTSTSQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0134038_12474172	3300012382	Grasslands Soil	RKPMNTQLPLVVALAEPKMIAGEVDIQLSSKTSTCQKSNTFNVIGVLSDLVNDVAVDDVIA*
Ga0134023_11830353	3300012385	Grasslands Soil	MKRELPLVVALAEPKLIAGEVDIQLSSRTSTSQKSNTFSLAGVLSDIAADVAVDDVIA*
Ga0134054_11180612	3300012390	Grasslands Soil	DRSIEGDPMNSELPLVVEQAEPKLIAGEVDIQLSSQTATNQESSTFNGIGVLSDLVNDVG
Ga0134035_11407761	3300012391	Grasslands Soil	QDRSIEGDPMNSEELPLVVEQAEPKLIEGEVDIQLSSATNSTQKSNTFNGIGVLSDLVNDVAVDDVIA*
Ga0134035_11840901	3300012391	Grasslands Soil	IREEENPMKRELPLVVELAEPKLIAGEVDIQLSSQTSSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0134052_12191323	3300012393	Grasslands Soil	SHRSRKDLRRETMNTQLPLVVALAEPKMIAGEVDIQLSSQTSTRQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0134052_13243931	3300012393	Grasslands Soil	MKRELPLVVELAEPKLIAGEVDIQLSSQTATNQESSTFNGIGVLSDLVNDVAVDDVIA*
Ga0134052_13243932	3300012393	Grasslands Soil	GDPMNSELPLVVELAEPKLIAGEVDIQLSSQTSSGGKSNTFNVIGVLSDLVNDVTVDDVIA*
Ga0134057_10071502	3300012396	Grasslands Soil	RSRKDLRRETMNTQLPLVVALAEPKMIAGEVDIQLSSKTSTSQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0134057_12862333	3300012396	Grasslands Soil	EGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0134056_10258724	3300012397	Grasslands Soil	MNTQLPLVVALAEPKMIAGEVDIQLSSRTCTNQKSGTFNAVGVLSDLVGDV
Ga0134059_11237971	3300012402	Grasslands Soil	MKPALPLVVELAEPKLIAGEVDIQLSSSTRTNQRSKTLNVIGLLSDLVNDVAVDDVIA*
Ga0134059_11612191	3300012402	Grasslands Soil	HRSRKDLRRETMNTQLPLVVALAEPKMIAGEVDIQLSSQTSTRQKSKTLNVLGVLSDLVNDVAVDDVIA*
Ga0134041_11322841	3300012405	Grasslands Soil	MNSELPLVVEQAEPKLIAGEVDIQLSSQTATNQESSTFNGIGVLSDLVNDVAVDDVIA*
Ga0134041_12181091	3300012405	Grasslands Soil	MNTQLPLVVALAEPKLIAGEVDIQLSSRTTTHQKSGTFNLIGVLSDLVGDVAVDDVI
Ga0134053_14028812	3300012406	Grasslands Soil	MKTELPLVVELAEPKLIAGEVDIQLSSQTATNQESSTFNGIGVLSDLVNDVAVDDVIA*
Ga0134060_11934123	3300012410	Grasslands Soil	EEGDPMNTQLPLVVALAEPKLIAGEVDIQLSSRTTTNQKSGTFNLIGLLSDLVGDVAVDDVIA*
Ga0134060_14015001	3300012410	Grasslands Soil	KRELPLVVELAEPKLIAGEVDIQLSSQTHSGGKSNTLNVIGVLSDLVNDVTVDDVIA*
Ga0150984_1161609902	3300012469	Avena Fatua Rhizosphere	QDRSIEGDPMNSELPLVVELAEPKLIAGEVDIQLSSRTASFGKSNTANLIGVLSDLVNDVTVDDVIA*
Ga0154010_1888193	3300013062	Corn, Switchgrass And Miscanthus Rhizosphere	QESRREKPMKTEMPLVVELAEPKLIDGEVDIQLSSRTHSGGKSNTVNFIGVLSDLVNDVTVDDVIA*
Ga0197907_102024661	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLVVELAEPKLIDGEVDIQLSSCTSSGGKSNTVNFIGVLSDLVNDVTVDDVIA
Ga0197907_103339241	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLVVELAEPKMVAGEVEIQLSSATHSGGKSNTFNWIGVLSDLVNDVTVDDVIA
Ga0197907_103339242	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLVVELAEPRMVAGEVEIQLSSATHSGGKSNTFNVIGVLSDLVNDVTVDDVIA
Ga0197907_103339243	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLVVELADPKLVDGEVDIQLSSCTSSGAKSNTLNAVGVLSDLVNDVTVDDVIA
Ga0197907_104323711	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	RENPMNTELPLVVELAEPKLIDGEVDIQLSSRTHSGGKSNTFNFIGVLSDLVNDVTVDDVIA
Ga0197907_104323712	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKRDLPLVVELAEPKLIDGEVDIQLSSCTHSGGKSNTVNFIGVLSDLVNDVTVDDVIA
Ga0197907_113237091	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKRDLPLVVELAEPKLIDGEVDIQLSSCTSSGGKSNTVNFIGVLSDLVNDVTVDDVIA
Ga0206356_103598121	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	RRNPMKRDLPLVVELAEPKLIDGEVDIQLSSCTSSGGKSNTFNFIGVLSDLVNDVTVDDVIA
Ga0206356_108981293	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLVVELADPKLVDGEVDIQLSSCTSSGAKSNTLNAVGVLSDLVNDVTVDDV
Ga0206349_11238291	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MKRDLPLVVELAEPKLIDGEVDIQLSSCTSSGGKSNTFNFIGVLSDLVNDVTVDDVIA
Ga0206351_107576223	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	PLVVELAEPKMVAGEVEIQLSSATHSGGKSNTFNWIGVLSDLVNDVTVDDVIA
Ga0206350_100544101	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	NPMKRELPLVVELAEPKMVAGEVEIQLSSATHSGGKSNTFNWIGVLSDLVNDVTVDDVIA
Ga0206354_110260473	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLGVELAEPRMVAGEVEIQLSSATHSGGKSNTFNVIGVLSDLVNDVTVDDVIA
Ga0206353_101280173	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MKRELPLVVELADPRMVAGEVEIQLSSCTSSGAKSNTLNAVGVLSDLVNDVTVDDVIA
Ga0307413_106163191	3300031824	Rhizosphere	MKSGLPLVLELAEAKMIAGDVDIQLSSQTSTRQKSATFSGIGVLSDLVADVAVDDVIA
Ga0307407_105307622	3300031903	Rhizosphere	MNSELPLVVELAEPKLIAGEVDIQLSSATQTTQKSNTFNAIGVLSDLVNDVAVDDVIA
Ga0307407_105307623	3300031903	Rhizosphere	MKRDMPLVVELAEPKLIAGEVDIQLSSATQTTQKSNTFNAIGVLSDLVNDVAVDDVIA
Ga0307416_1010364261	3300032002	Rhizosphere	MKRELPLVVELAEPRLIAGEVDIQLSSQTSTRQKTATFQAVGVLSDLVSDVSVDDVIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062239

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences