Metagenome / Metatranscriptome Family F062217

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062217
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	78 residues
Representative Sequence	VARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDRRNVANRILRERYAGSERGIALWILIIAAGAGLVALLE
Number of Associated Samples	95
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.38 %
% of genes near scaffold ends (potentially truncated)	33.59 %
% of genes from short scaffolds (< 2000 bps)	93.13 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.015 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.901 % of family members)
Environment Ontology (ENVO)	Unclassified (35.878 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.695 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.55% β-sheet: 0.00% Coil/Unstructured: 36.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF03150	CCP_MauG	2.29
PF07311	Dodecin	2.29
PF13442	Cytochrome_CBB3	1.53
PF13432	TPR_16	1.53
PF00346	Complex1_49kDa	1.53
PF01738	DLH	1.53
PF13411	MerR_1	0.76
PF04800	NDUS4	0.76
PF09351	DUF1993	0.76
PF08239	SH3_3	0.76
PF14559	TPR_19	0.76
PF01663	Phosphodiest	0.76
PF06314	ADC	0.76
PF13458	Peripla_BP_6	0.76
PF00239	Resolvase	0.76
PF02643	DUF192	0.76
PF13185	GAF_2	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	2.29
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	2.29
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	1.53
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	1.53
COG1430	Uncharacterized conserved membrane protein, UPF0127 family	Function unknown [S]	0.76
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.76
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.76
COG4689	Acetoacetate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
All Organisms	root	All Organisms	38.17 %
Methanococcoides methylutens	species	Methanococcoides methylutens	3.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
cellular organisms	root	All Organisms → cellular organisms	37.40 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
Viruses	superkingdom	All Organisms → Viruses	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.40 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.59 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.77 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.43 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.53 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	18.32 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.29 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.53 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	12.21 %
Filomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium	5.34 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.29 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.53 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.76 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.02 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	12.21 %
Candidatus Filomicrobium marinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	5.34 %
Methanococcoides methylutens MM1	strain	Methanococcoides methylutens → Methanococcoides methylutens MM1	3.82 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.29 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.53 %
Methyloceanibacter methanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	0.76 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0991196	Not Available	752	Open in IMG/M
3300000953\|JGI11615J12901_10434457	Not Available	601	Open in IMG/M
3300000955\|JGI1027J12803_100288913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	604	Open in IMG/M
3300004114\|Ga0062593_102376656	Not Available	597	Open in IMG/M
3300004114\|Ga0062593_103035415	Not Available	537	Open in IMG/M
3300004463\|Ga0063356_100755546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1348	Open in IMG/M
3300004481\|Ga0069718_15862088	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005093\|Ga0062594_103232283	Not Available	511	Open in IMG/M
3300005328\|Ga0070676_11207065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	575	Open in IMG/M
3300005340\|Ga0070689_101840929	Not Available	552	Open in IMG/M
3300005341\|Ga0070691_10664288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	622	Open in IMG/M
3300005365\|Ga0070688_101640693	Not Available	525	Open in IMG/M
3300005439\|Ga0070711_101853535	Not Available	530	Open in IMG/M
3300005457\|Ga0070662_101119045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	676	Open in IMG/M
3300005615\|Ga0070702_101845403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	506	Open in IMG/M
3300005843\|Ga0068860_100861375	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300006163\|Ga0070715_10371376	Not Available	787	Open in IMG/M
3300006581\|Ga0074048_13297259	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300007076\|Ga0075435_101599212	Not Available	572	Open in IMG/M
3300009091\|Ga0102851_13509647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	503	Open in IMG/M
3300009094\|Ga0111539_11194223	Not Available	883	Open in IMG/M
3300009098\|Ga0105245_10731466	Not Available	1024	Open in IMG/M
3300009101\|Ga0105247_11388032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	568	Open in IMG/M
3300009146\|Ga0105091_10197003	Not Available	958	Open in IMG/M
3300009148\|Ga0105243_13014585	Not Available	511	Open in IMG/M
3300009157\|Ga0105092_10136650	All Organisms → cellular organisms → Bacteria → Proteobacteria	1358	Open in IMG/M
3300009168\|Ga0105104_10102822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1538	Open in IMG/M
3300009545\|Ga0105237_12179084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	564	Open in IMG/M
3300009553\|Ga0105249_10602514	Not Available	1153	Open in IMG/M
3300009810\|Ga0105088_1009476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1423	Open in IMG/M
3300010043\|Ga0126380_10050366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2245	Open in IMG/M
3300010362\|Ga0126377_10043763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3867	Open in IMG/M
3300010371\|Ga0134125_10085326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3514	Open in IMG/M
3300010373\|Ga0134128_10866408	All Organisms → Viruses → Predicted Viral	1000	Open in IMG/M
3300010373\|Ga0134128_11615213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	713	Open in IMG/M
3300010375\|Ga0105239_12821857	Not Available	567	Open in IMG/M
3300010399\|Ga0134127_10668884	Not Available	1075	Open in IMG/M
3300011445\|Ga0137427_10380898	Not Available	589	Open in IMG/M
3300012948\|Ga0126375_10976650	Not Available	687	Open in IMG/M
3300012951\|Ga0164300_10070711	Not Available	1448	Open in IMG/M
3300012951\|Ga0164300_10522786	Not Available	683	Open in IMG/M
3300012951\|Ga0164300_10759463	Not Available	595	Open in IMG/M
3300012951\|Ga0164300_11191970	Not Available	504	Open in IMG/M
3300012957\|Ga0164303_10011238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3127	Open in IMG/M
3300012957\|Ga0164303_10335157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	907	Open in IMG/M
3300012957\|Ga0164303_11037120	Not Available	587	Open in IMG/M
3300012958\|Ga0164299_10536270	Not Available	786	Open in IMG/M
3300012958\|Ga0164299_11473468	Not Available	530	Open in IMG/M
3300012960\|Ga0164301_10005926	All Organisms → cellular organisms → Bacteria → Proteobacteria	4533	Open in IMG/M
3300012960\|Ga0164301_10269107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1130	Open in IMG/M
3300012960\|Ga0164301_10385937	Not Available	975	Open in IMG/M
3300012960\|Ga0164301_10834562	Not Available	708	Open in IMG/M
3300012961\|Ga0164302_10967626	Not Available	660	Open in IMG/M
3300012984\|Ga0164309_10044717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2529	Open in IMG/M
3300012984\|Ga0164309_11612428	Not Available	556	Open in IMG/M
3300012985\|Ga0164308_11927667	Not Available	551	Open in IMG/M
3300012986\|Ga0164304_11080842	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300012986\|Ga0164304_11848688	Not Available	505	Open in IMG/M
3300012987\|Ga0164307_10504126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	915	Open in IMG/M
3300012987\|Ga0164307_10533671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	893	Open in IMG/M
3300012987\|Ga0164307_11332770	Not Available	601	Open in IMG/M
3300012988\|Ga0164306_10918950	Not Available	715	Open in IMG/M
3300012988\|Ga0164306_10936566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	709	Open in IMG/M
3300012989\|Ga0164305_11687200	Not Available	568	Open in IMG/M
3300013306\|Ga0163162_10785992	Not Available	1070	Open in IMG/M
3300013307\|Ga0157372_11065813	Not Available	935	Open in IMG/M
3300015077\|Ga0173483_10333647	Not Available	755	Open in IMG/M
3300015371\|Ga0132258_10930734	Not Available	2195	Open in IMG/M
3300015371\|Ga0132258_12161793	Not Available	1398	Open in IMG/M
3300015371\|Ga0132258_12362772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1332	Open in IMG/M
3300015371\|Ga0132258_13505046	Not Available	1075	Open in IMG/M
3300015372\|Ga0132256_100760593	Not Available	1085	Open in IMG/M
3300015372\|Ga0132256_101749714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	730	Open in IMG/M
3300015373\|Ga0132257_100361722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1756	Open in IMG/M
3300015373\|Ga0132257_101591377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	836	Open in IMG/M
3300015374\|Ga0132255_102363995	Not Available	811	Open in IMG/M
3300015374\|Ga0132255_104360210	Not Available	600	Open in IMG/M
3300015374\|Ga0132255_104441738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	595	Open in IMG/M
3300017792\|Ga0163161_11791580	Not Available	546	Open in IMG/M
3300018051\|Ga0184620_10162772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	727	Open in IMG/M
3300018054\|Ga0184621_10202767	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300018072\|Ga0184635_10045349	Methanococcoides methylutens → Methanococcoides methylutens MM1	1689	Open in IMG/M
3300018076\|Ga0184609_10268805	Not Available	797	Open in IMG/M
3300018078\|Ga0184612_10523941	Not Available	574	Open in IMG/M
3300021078\|Ga0210381_10404868	Not Available	505	Open in IMG/M
3300022726\|Ga0242654_10326450	Not Available	571	Open in IMG/M
3300023261\|Ga0247796_1032032	Not Available	862	Open in IMG/M
3300025905\|Ga0207685_10288106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	808	Open in IMG/M
3300025916\|Ga0207663_11430843	Not Available	557	Open in IMG/M
3300025931\|Ga0207644_11472019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	572	Open in IMG/M
3300026075\|Ga0207708_10314708	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300026118\|Ga0207675_100051615	All Organisms → cellular organisms → Bacteria	3837	Open in IMG/M
3300026118\|Ga0207675_100221110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1825	Open in IMG/M
3300028587\|Ga0247828_10352103	Methanococcoides methylutens → Methanococcoides methylutens MM1	831	Open in IMG/M
3300028587\|Ga0247828_10478646	Not Available	735	Open in IMG/M
3300028587\|Ga0247828_10504333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	720	Open in IMG/M
3300028592\|Ga0247822_11661687	Not Available	543	Open in IMG/M
3300028597\|Ga0247820_10273608	Not Available	1098	Open in IMG/M
3300028597\|Ga0247820_10304711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1044	Open in IMG/M
3300028809\|Ga0247824_10847363	Methanococcoides methylutens → Methanococcoides methylutens MM1	568	Open in IMG/M
3300028814\|Ga0307302_10053662	Not Available	1878	Open in IMG/M
3300028889\|Ga0247827_10757187	Not Available	639	Open in IMG/M
3300028889\|Ga0247827_10933354	Not Available	585	Open in IMG/M
3300030987\|Ga0308155_1014427	Not Available	677	Open in IMG/M
3300031170\|Ga0307498_10418847	Not Available	531	Open in IMG/M
3300031226\|Ga0307497_10024761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1896	Open in IMG/M
3300031231\|Ga0170824_123565614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	998	Open in IMG/M
3300031538\|Ga0310888_10878413	Not Available	559	Open in IMG/M
3300031562\|Ga0310886_10374199	Not Available	834	Open in IMG/M
3300031720\|Ga0307469_10755306	Not Available	888	Open in IMG/M
3300031720\|Ga0307469_11037234	Not Available	768	Open in IMG/M
3300031720\|Ga0307469_12262655	Methanococcoides methylutens → Methanococcoides methylutens MM1	530	Open in IMG/M
3300031740\|Ga0307468_100375162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	1073	Open in IMG/M
3300031740\|Ga0307468_101813257	Not Available	578	Open in IMG/M
3300031854\|Ga0310904_10679166	Not Available	710	Open in IMG/M
3300031858\|Ga0310892_11278541	Not Available	525	Open in IMG/M
3300031908\|Ga0310900_10657267	Not Available	835	Open in IMG/M
3300031913\|Ga0310891_10259214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	603	Open in IMG/M
3300031949\|Ga0214473_10437628	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300032013\|Ga0310906_10416564	Not Available	891	Open in IMG/M
3300032013\|Ga0310906_11103079	Not Available	574	Open in IMG/M
3300032075\|Ga0310890_10227499	Not Available	1298	Open in IMG/M
3300032075\|Ga0310890_11280947	Not Available	599	Open in IMG/M
3300032180\|Ga0307471_101335736	Methanococcoides methylutens → Methanococcoides methylutens MM1	879	Open in IMG/M
3300032180\|Ga0307471_102727327	Not Available	627	Open in IMG/M
3300032180\|Ga0307471_103805802	Not Available	534	Open in IMG/M
3300032205\|Ga0307472_100100141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	1991	Open in IMG/M
3300033550\|Ga0247829_11207369	Not Available	627	Open in IMG/M
3300033551\|Ga0247830_10124188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1852	Open in IMG/M
3300033551\|Ga0247830_10944645	Not Available	687	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.10%
Host-Associated	Host-Associated	22.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.94%
Plants	Host-Associated → Plants	22.90%
Aquatic	Environmental → Aquatic	9.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.45%
Freshwater	Environmental → Aquatic → Freshwater	4.58%
Sediment	Environmental → Aquatic → Sediment	4.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.31%
Loam	Environmental → Terrestrial → Soil → Loam	6.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.58%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.76%
Sand	Environmental → Terrestrial → Soil → Sand	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	16.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.58%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.29%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.76%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.76%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	16.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.34%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.05%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.29%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.53%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.53%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.53%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.76%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.76%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.76%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.76%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.76%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_09911962	2228664021	Soil	MGNGVDAEQPARLRAIARELEAMSDWELERGLASSLGFDDNRRMVANCILRERYAGTERGIALWVLAVAVGAGVIALLE
JGI11615J12901_104344573	3300000953	Soil	MGNGVDAEQPARLRAIARELEAMSDWELERGLASSLGFDDNRRMVANCILRERYAGTERGIALWVLA
JGI1027J12803_1002889133	3300000955	Soil	MGKDIDAERPETLGAVTRELEAMSDWELERGCAASLGFDDSRRMVANRILRERYAGPERGMTLWILA
Ga0062593_1023766563	3300004114	Soil	MGKDIDAERPETLGAVTRELEAMSDWELERGCAASLGFDDSRRMVANRILRERYAGPERGMTLWILAIAAGAGLVALLE*
Ga0062593_1030354152	3300004114	Soil	MGNGVDAEQPARLRAIARELEAMSDWELERGLASSLGFDDNRRMVANCILRERYAGTERGIALWVLAVAVGAGVIALLE*
Ga0063356_1007555463	3300004463	Arabidopsis Thaliana Rhizosphere	MAPDDETVMGRESEARRRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0069718_158620883	3300004481	Sediment	RESEARRRDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRDRYAGPERRVALWILAIAAGACMMALLE*
Ga0062594_1032322831	3300005093	Soil	MCSDGTHLAVSRELVAMSDWELERGLASSLGFDQDRRNVANRILRERYAGQEAGVALWIMAIAAGACVIALLE*
Ga0070676_112070652	3300005328	Miscanthus Rhizosphere	MGRESEARRRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGSEAGVALWIVAMAAGAGLIALLE*
Ga0070689_1018409291	3300005340	Switchgrass Rhizosphere	TEKQMRDGNKSERDRLSVITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0070691_106642881	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRDGNKSERDRLSVITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGLIASLE*
Ga0070688_1016406931	3300005365	Switchgrass Rhizosphere	RRRDKLSAINRELDAMSDWELERGLASSLGFDHDQRTVANRILRERYAGSEAGVALWIVAMAAGAGLIALLK*
Ga0070711_1018535352	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGRESEARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVAKRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0070662_1011190452	3300005457	Corn Rhizosphere	MRDGNKSERDRLSVITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0070664_1018082072	3300005564	Corn Rhizosphere	ELRSITRELQQMSDWELERGLASSTAFDDDQRSIADRILRTRYAGFEAGIIPWISAIAVGAGVIALLE*
Ga0070702_1018454031	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRDGNKSERDRLSVITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAG
Ga0068860_1008613751	3300005843	Switchgrass Rhizosphere	FDVAPSDGTVMVGESEARRRDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRERYAGPERRVALWILAIAAGACMMALLE*
Ga0070715_103713763	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGRESEARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVANRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0074048_132972592	3300006581	Soil	MSNSGDAVQPVRLTAITPELEAMSNWELERGLASSLGFDNDRRTAANLILRERYAGTERRVALWI
Ga0075435_1015992121	3300007076	Populus Rhizosphere	MGKDIDAERPETLGAVTRELEAMSDWELERGCAASLGFDDSRRMVANRILRERYAGPGRGMTLWILAIAAGAGLVALLE*
Ga0102851_135096472	3300009091	Freshwater Wetlands	MRDGKSERDRLSVITRELEAMSDWELERGCAASLGFDDDRRMVAHRLLRERYAGPEAGVALWIMAIAARAGLIALLE*
Ga0111539_111942231	3300009094	Populus Rhizosphere	DPCLVFGRGDVRWRDTLSAINRELEAMSDWELERGLASSLGFDDDRRAVADRILRDRYAGPERRVALWILAIVAGACMMALLE*
Ga0105245_107314663	3300009098	Miscanthus Rhizosphere	MAQLRKVVARESEGRRRDKLSAINRELDAMSDWELERGLASSLGFDHDQRTVANRILRERYAGSEAGVALWIVAMAAGAGLIALLK*
Ga0105247_113880322	3300009101	Switchgrass Rhizosphere	MRDGNKSERDRLSVITRELEAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGVGLFALLE*
Ga0105091_101970032	3300009146	Freshwater Sediment	MCSDGTHLAVSRELVAMSDWELERGLASSLGFDQDRRNVANRILRERYAGQEAGVALWILAIAAGTCMMALLE*
Ga0105243_130145852	3300009148	Miscanthus Rhizosphere	MVVARESEARRRDKLSAINRELEAMSDWELERGLASSLFFDHDQRNVANRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0105092_101366501	3300009157	Freshwater Sediment	INRDLGAMSDWELERGLASSLGFDHDQRNVANCILRERYTGPEAGVALWIMAIAAGAGLIALLE*
Ga0105104_101028222	3300009168	Freshwater Sediment	MDRKSEARRQDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANCILRERYAGPEAGVALWIMVIAAGAGLIALLE*
Ga0105237_121790842	3300009545	Corn Rhizosphere	MRDGNKSERDRLSVITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGVGLFALLE*
Ga0105249_106025142	3300009553	Switchgrass Rhizosphere	MVVARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRERYAGVERGIALWILIITAGAGLVALLK*
Ga0105088_10094761	3300009810	Groundwater Sand	MSNSGEAGQAAKLRAITRELEAMSDWELERGVASSLGFDDNQRTVANLILRQRYAGTERRVAIWIVAIAVGAGVIALLE*
Ga0126380_100503662	3300010043	Tropical Forest Soil	MGNQSEAKRPDELRAIARELEAMSDWELERGCAASLGFDDDRRMVANRILRYRYAGPEVGVALWILAIAAGAGVIALLE*
Ga0126377_100437635	3300010362	Tropical Forest Soil	MGNQSVAKRPDELRAIARELEAMSDWELERGCAASLGFDDDRRMVANRILRYRYAGPEVGVALWILAIAAGAGVIALLE*
Ga0134125_100853267	3300010371	Terrestrial Soil	MAQLRKVVARESEGRRRDKLSAINRELDAMSDWELERGLASSLGFDHDQRTVANRILRERYAGSEAGVALWIVAMAAGAGLIALLE*
Ga0134128_108664082	3300010373	Terrestrial Soil	MGRESEARRRDKLSAIDRELGAMTDWELERGLASSLGFVNDQRNVTNRIHRDRYAGTERGIALWILAIAAGAGMVALLKWVARPWD*
Ga0134128_116152132	3300010373	Terrestrial Soil	MRDGNKSEPDRLSVITRELQAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0105239_128218571	3300010375	Corn Rhizosphere	MWLPGEGTVMARESEARRRDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRDRYAGPERRVALWILAIAAGACMMALLE*
Ga0134127_106688841	3300010399	Terrestrial Soil	STEKQMRDGNKSERDRLSVITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0137427_103808982	3300011445	Soil	RSMWLPGDGVVMAGESEARRRDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRDRYAGPERRVALLLLAIAAGACMMALLE*
Ga0126375_109766501	3300012948	Tropical Forest Soil	MHRHPELDAVVLPGEHREAARPDKLSAITRELEEMSDWELERGLASSLGFDHYRRIVADRILRRRYAGPEAGITYWILAIVVGVGVIALLE*
Ga0164300_100707111	3300012951	Soil	TTVMGRESEARRRDKLNAINRELGAMSDCELERGLASSLGFDHDRRNIANRILRERYAGPEAGVALWIMAIAVGVGLIALLE*
Ga0164300_105227862	3300012951	Soil	MAGESEARGRDTLSAINSELGAMSDWELERGLASSLGFDNDQRNVANRILRDRYAGTERGIALWILAIAAGAGIVALLE*
Ga0164300_107594631	3300012951	Soil	MHRHPERNAVVLPGKHREAARPDKLSAITRELEEMSDWELERGLASSLGFDHYRRIVADRILRRRYAGPEAGITYWILAIVVGAGVIALLE*
Ga0164300_111919701	3300012951	Soil	MARESAARRHKLRAINRELGAMTDWELERGLASSLGFDHDQRNVANRILRERYAGPEAGVALWIMAIAAVAGLVALLE*
Ga0164303_100112384	3300012957	Soil	MAGEIARGRDTLSAINSELGAMSDWELERGLASSLGFDNDQRNVANRILRDRYAGTERGIALWILAIAAGAGIVALLE*
Ga0164303_103351572	3300012957	Soil	MGREREARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVAKRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0164303_110371201	3300012957	Soil	MVVARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDDDRRSVADRILRERYAGPEAGVALWLLAIAA
Ga0164299_105362702	3300012958	Soil	MHRHPERNAVVLPVKHREAARPDKLSAITRELEEMSDWELERGLASSLGFDHYRRIVADRILRRRYAGPEAGITYWILAIVVGAGVIALLE*
Ga0164299_114734682	3300012958	Soil	MGKGEARRRDRLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPERGIALWILIITAGAGLVALLE*
Ga0164301_100059261	3300012960	Soil	MAGEIARGRDTLSAINSELGAMSDWELERGLASSLGFDNDQRNVANRILRDRYAGTERGIALWILAIAAGAGI
Ga0164301_102691071	3300012960	Soil	MRDGNKPERDRLSVITRELQAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0164301_103859371	3300012960	Soil	EETVMGRESEARRRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRDRYAGTERGIALWILAIAAGAGIVALLE*
Ga0164301_108345621	3300012960	Soil	MHRHPERNAVVLPGKHREAARPDKLSAITRELEEMSDWELERGLASSLGFDHSRRIVADRILRRRYAGPEAGITYWILAIVVGAGVIALLE*
Ga0164302_109676261	3300012961	Soil	MAQLRKVVARESEGRRRDKLSAINRELDAMSDWELERGLASSLGFDHDQRNVADRILRERYAGPETGVALWIMAIAAGVG
Ga0164309_100447171	3300012984	Soil	MAGESEARGRDTLSAINSELGAMSDWELERGLASSLGFDNDQRNVANRILRDRYAGTERGIALWILAIAAGAGIVAL
Ga0164309_116124281	3300012984	Soil	ETVMARESAARRHKLSAINRELGAMTDWELERGLASSLGFDHDQRNVANRILRDRYAGRERGIALWILAIAAGAGIVALLE*
Ga0164308_119276671	3300012985	Soil	YAPAASKTKRSLSAKVLINMVGEIARGRDTLSAINSELGAMSDWELERGLASSLGFDNDQRNVANRILRDRYAGTERGIALWILAIAAGAGIVALLE*
Ga0164304_110808421	3300012986	Soil	ARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVAKRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0164304_118486881	3300012986	Soil	ETVVARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDRRNIANRILRERYAGPEAGVALWIMAIAVGVGLIALLE*
Ga0164307_105041262	3300012987	Soil	MRDGNKSERDRLSVITRELQAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGAGQIALLE*
Ga0164307_105336712	3300012987	Soil	MGRESEARRQDKLSAINRELGAMSDWELERALASSLFFDHDQRNVAKRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0164307_113327701	3300012987	Soil	LSAINRELGAMSDWELERGLASSLFFDHDQRNVANRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0164306_109189502	3300012988	Soil	DKLSAITRELEEMSDWELERGLASSLGFDHYRRIVADRILRRRYAGPEAGITYWILAIVVGAGVIALLE*
Ga0164306_109365662	3300012988	Soil	MGRESEARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVANRILRERYAGSERGIALWILIIAAGAELVALLE*
Ga0164305_116872002	3300012989	Soil	LSAINRELGAMSDWELERGLASSLFFDHDQRNVAKRILRERYAGSERGIALWILIIAAGAGLVALLE*
Ga0163162_107859923	3300013306	Switchgrass Rhizosphere	MVVARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPEAGVALWIMAIAAVAGLVALLE*
Ga0157372_110658132	3300013307	Corn Rhizosphere	MGRDSEARLRDKLSAIDRELGAMTDWELERGLASSLGFVNDQRNVANRIHRDRYAGTERGIALWILAIAAGAGIVALLE*
Ga0173483_103336471	3300015077	Soil	MGKDIDAERPETLGAVTRELEAMSDWELERGCAASLGFDDSRRMVANRILRERYAGPERGMTLWILAIAAGAGLVALFE*
Ga0132258_109307345	3300015371	Arabidopsis Rhizosphere	NVITRELEAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPERRVALWVLAIATGASVIALLE*
Ga0132258_121617933	3300015371	Arabidopsis Rhizosphere	MRDGNKSERDRLSVITRELEAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVSLWIVAIAAGAGLIALLE*
Ga0132258_123627724	3300015371	Arabidopsis Rhizosphere	MRDGNKSERDRLSVITRELQAMSDWELERGCAASLGFDDDRRMMADRLLRERYAGPEAGVALWIMAIA
Ga0132258_135050462	3300015371	Arabidopsis Rhizosphere	VGRGDVRRLDKFSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPETGVALWIMAIAAGAGIVALLKWVARPWD*
Ga0132256_1007605933	3300015372	Arabidopsis Rhizosphere	HRKRSKAAGHLSAINRELEAMSDWKLERGLASSLDFDHDQRNVANGILRERYAGTERGIALWILAIAAGAGIVALLKWVARPWD*
Ga0132256_1017497141	3300015372	Arabidopsis Rhizosphere	QMRDGNKSERDRLSVITRELQAMSDWELERGCAASLGFDDDRRMMADRLLRERYAGREAGVALWIMAIAAGAGLIALLE*
Ga0132257_1003617221	3300015373	Arabidopsis Rhizosphere	MGRESEAKQRDKLSAINRELGAMSDWELERGLASSLGFDHDRRNVANRILRERYAGSERGIALWILMIAVGAGLVALLE*
Ga0132257_1015913772	3300015373	Arabidopsis Rhizosphere	MITRELEALSDWELERGCAASLGFDDDRRVVAHRLLRERYAGTEAGVALWIMAIAAGAGLIALLE*
Ga0132255_1023639951	3300015374	Arabidopsis Rhizosphere	LVLGRGDVRWRDKLSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPETGVALWIMAIAAGAGIVALLKWVARPWD*
Ga0132255_1043602102	3300015374	Arabidopsis Rhizosphere	MRDGNKSERDRLSVITRELEAMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVSLWIVAIA
Ga0132255_1044417382	3300015374	Arabidopsis Rhizosphere	MITRELEASSDWELERGCAASLGFDDDRRMMADRLLRERYAGPEAGVALWIMAIAAGAGLIALLE*
Ga0163161_117915801	3300017792	Switchgrass Rhizosphere	MGRESEARRRDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVANRILRERYAGPEAGVALWIMAIVAGVGLIAMLE
Ga0184620_101627722	3300018051	Groundwater Sediment	MGRESEARRRDKLSEINRELRAMSDWELERGLASSLGFDHDRRNVANRILGERYAGSERGIALWILMIAAGAGLVALLE
Ga0184621_102027671	3300018054	Groundwater Sediment	MGRESEARRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPETGVALWIMAIAAGVGLFALLE
Ga0184635_100453491	3300018072	Groundwater Sediment	MSNSGDAVQPVRLTAITPELEAMSNWELERGLASSLGFDDDRRTAANLILRERYAGTERRVALWILAIAVGAGVIVLLE
Ga0184609_102688051	3300018076	Groundwater Sediment	VARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDRRNVANRILRERYAGSERGIALWILMIAAGAGLVALLE
Ga0184612_105239411	3300018078	Groundwater Sediment	MAGTLMGNDIEAERQAKLGAITRELEAMSDWELERGLASSIGFDHDRRIVADRILRERYAGPERGIALWIMVIAAGAGVIALLE
Ga0210381_104048681	3300021078	Groundwater Sediment	ETVVARESEARRRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPETGVALWIMAIAAGVGLFALLE
Ga0242654_103264501	3300022726	Soil	MDRESEARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVAKRILRERYAGSERGIALWILIIAAGGG
Ga0247796_10320321	3300023261	Soil	MGKDIDAERPETLGAVTRELEAMSDWELERGCAASLGFDDSRRMVANRILRERYAGPERGMTLWILAIAAGAGLVALLE
Ga0207685_102881061	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MGRESEARRQDKLSAINRELGAMSDWELERGLASSLFFDHDQRNVANRILRERYAGSERGIALWILIIAAGAGLVALLE
Ga0207663_114308432	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RNAVVLPGQHREAARPDKLSAITRELEQMSDWELERGLASSLGFDHYRRIVADRILRRRYAGPEAGITYWILAIVVGAGVIALLE
Ga0207644_114720191	3300025931	Switchgrass Rhizosphere	RRDKLSAINRELDAMSDWELERGLASSLGFDHDQRTVANRILRERYAGSEAGVALWIVAMAAGAGLIALLE
Ga0207708_103147082	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VITRELETMSDWELERGCAASLGFDDDRRMVADRLLRERYAGPEAGVALWIMAIAAGACVIALLEYLARPRD
Ga0207675_1000516153	3300026118	Switchgrass Rhizosphere	VARESEARQRDKLSAINRELEAMFDWKLERGLASSLDFDHGQRNVANCILRERYAGTERGIALWILAIAAGAGMVALLKWVARPWD
Ga0207675_1002211103	3300026118	Switchgrass Rhizosphere	VARESEARRRDKLSAINRELEAMSDWELERGLASSLFFDHDQRNVANRILRERYAGSERGIALWILIIAAGAELVVALLE
Ga0247828_103521032	3300028587	Soil	LSNSGDAVQPVRLTAITPELEAMSDWELERGLASSLGFDDDRRTAANLILRERYAGTERRVAIWILAIAVGAGVIVLLE
Ga0247828_104786461	3300028587	Soil	ETVVATDSEARRRGKLSAINRELGAMSDWELERGLASSLGFDHDRRNVANRILRERYAGPERGIALWILIIMAGAGLVALLE
Ga0247828_105043332	3300028587	Soil	MGDEVRPVDLPPRGITRELEAMSDWELERGLASSTGFDQDRRVVDNRILRERYAGPERGIAFWILAVAAGAGVVALLE
Ga0247822_116616872	3300028592	Soil	LSNSGDAVQPVRLTAITPELEAMSDWELERGLASSLGFDDDRRTAANLILRERYAGTERRVAIWILAIAVGAGVIVILE
Ga0247820_102736082	3300028597	Soil	MDRESEARRQDKLSAINRELGAMSDWELERGVASCLGFDHDQRTVANRILGERYAGTERGIALWILMIAAAVGLVALLE
Ga0247820_103047113	3300028597	Soil	MGNEVRPVDLPPRGITRELEAMSDWELERGLASSTGFDQDRRVVDNRILRERYAGPERGIAFWILAVAAGAGVVALLE
Ga0247824_108473631	3300028809	Soil	LSNSGDAVQPVRLTAITPELEAMSNWELERGLASSLGFDDDRRTAANLILRERYAGTERRVAIWILAIAVGAGVIVILE
Ga0307302_100536621	3300028814	Soil	DKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPETGVALWIMAIAAGVGLFALLE
Ga0247827_107571872	3300028889	Soil	MGRESEARRRDKLSAINRELGAMSDWELERGLASSLGFDHDRRNVANRVLRERYAGSERGIALWILMIAAGAGLVALLE
Ga0247827_109333541	3300028889	Soil	MGDEVRPVDLPPRGIARELEAMSDWELERGLALSTGFDQDRRVVDNRILRERYAGPERGIAFWILAVAAGAGVVALLE
Ga0308155_10144271	3300030987	Soil	MGRESEPRPRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPETGVALWIMAIAAGVGLFALLE
Ga0307498_104188471	3300031170	Soil	MGRESEARRRDKLNAINRELGAMSDCELERGLASSLGFDHDRRNIANRILRERYAGPEAGVALWIMAIAAGVGLFALLE
Ga0307497_100247613	3300031226	Soil	VARESEARRRDKIGAINRKLGAMSDWELERGLASSLGFDHDQRNVANRILRDRYAGTERGIALWILAIAAGAGIVALLE
Ga0170824_1235656142	3300031231	Forest Soil	MGRESEARSAINRELGAMSDWELERGLASSLFFDHDQRNVANRILKERYAGSERGIALWILIIAAGAGVAALLE
Ga0310888_108784131	3300031538	Soil	MAGEREAKRQDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRDRYAGPERRVALWILAIAAGACMMALLE
Ga0310886_103741991	3300031562	Soil	EETVMARESEARRRDKLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRERYAGPERRVALWILAIAAGACMMALLE
Ga0307469_107553063	3300031720	Hardwood Forest Soil	MGRESEARRRDKLSAIDRELGAMSDWELERGLASSLFFDHDQRNIANRILRDRYAGPEAGVALWIMAIAAVAGLIALLE
Ga0307469_110372341	3300031720	Hardwood Forest Soil	VARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDRRNVANRILRERYAGSERGIALWILIIAAGAGLVALLE
Ga0307469_122626551	3300031720	Hardwood Forest Soil	VRLTAITPELEAMSDWELERDLASSLGFDDDRRTAANLILRERYAGTERRVALWILAIAVGAGVIVLLE
Ga0307468_1003751623	3300031740	Hardwood Forest Soil	MGKGEARRRDRLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERYAGPERGIALWILIITAGAGLVALLE
Ga0307468_1018132572	3300031740	Hardwood Forest Soil	MAPDDETVMGRESEARRRDKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRILRERNAGPEAGVALWIMAIAAGAGLIALLE
Ga0310904_106791661	3300031854	Soil	HLAVSRELVAMSDWELERGLASSLGFDQDRRNVANRILRERYAGQEAGVALWIMAIAAGACVIALLE
Ga0310892_112785411	3300031858	Soil	MAGEIARGRDTLSAINSELGAMSDWELERGLGSSLGFDRDRRNVANRILRERYAGLEAGVALWIMAIAAG
Ga0310900_106572672	3300031908	Soil	MGRESEARRRDKLNAINRELGAMSDCELERGLASSLGFDHDRRNIANRILRERYAGPEAGVALWIMAIAAGACVIALLE
Ga0310891_102592141	3300031913	Soil	MRDGNKSERDRLSVITRELQAMSDWELERGCAASLGFDDDRRVVAHRLLRERYAGTEAGVALWIMAIAAGAGLIPLLE
Ga0214473_104376281	3300031949	Soil	DKLSAINRELGAMSDWELERGLASSLGFDHDQRNVANCILRERYAGPEAGVALWIMAIAAGAGLIALLE
Ga0310906_104165641	3300032013	Soil	DGTHLAVSRELVAMSDWELERGLASSLGFDQDRRNVANRILRERYAGQEAGVALWIMAIAAGACVIALLE
Ga0310906_111030791	3300032013	Soil	MWLPGDGKVMAGESEARRRDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRDRYAGPERRVALWILAIVAGACMMALLE
Ga0310890_102274992	3300032075	Soil	VARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRDRYAGRERGIALWILAIAAGAGIVALLE
Ga0310890_112809471	3300032075	Soil	MWLPGDGKVMAGESEARRRDTLSAISRELGAMSDWELERGCAASLGFDDDRRMVADRILRDRYAGPERRVALWILAIAAGACMMALLE
Ga0307471_1013357362	3300032180	Hardwood Forest Soil	MSNSGDAVQPVRLTAITPELEAMSDWELERGLASSLGFDDDRRTAANLILRERYAGTERRVALWILAIAVGAGVIVLLE
Ga0307471_1027273271	3300032180	Hardwood Forest Soil	VARESEARRRDKLSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRERYAGVERGIALWILIITAGAGLVALLE
Ga0307471_1038058022	3300032180	Hardwood Forest Soil	MGGESEARRRDKLSAINRELGAMSDWELERGLASSLFFDHDQRNIANRILRERYAGPEAGVALWIMAIAAVAGLIALLE
Ga0307472_1001001412	3300032205	Hardwood Forest Soil	MGRESDARRQDKLSAINRELEAMSDWELERGLASSLGFDHDQRNVANRILRERYAGVERGIALWILIITAGAGLVALLE
Ga0247829_112073692	3300033550	Soil	VATDSEARRRGKLSAINRELGAMSDWELERGLASSLGFDHDRRNVANRILRERYAGPERGIALWILIIMAGAGLVALLE
Ga0247830_101241882	3300033551	Soil	MARESEARRRDTLSTISRELGAMSDWELERGLGSSLGFDRDRRNVANRILRERYAGLEAGVALWIMAIAAGAGVIALLE
Ga0247830_109446452	3300033551	Soil	MGRESEARRQDRLSAINRELGAMSDWELERGLASSLGFDHDQRNVANRIPRERYAGPERGIALWILIIMAGAGLVALLE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062217

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences