Metagenome / Metatranscriptome Family F062124

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062124
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	86 residues
Representative Sequence	MIPRWPAIVVAMLTLSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVFRSSIPVGEYVVRSGYQRCMLEEGYTEGGSWKGYSGWREE
Number of Associated Samples	91
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.89 %
% of genes near scaffold ends (potentially truncated)	22.90 %
% of genes from short scaffolds (< 2000 bps)	72.52 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.145 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (32.824 % of family members)
Environment Ontology (ENVO)	Unclassified (38.168 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.489 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.74% β-sheet: 13.04% Coil/Unstructured: 65.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF00072	Response_reg	6.11
PF04392	ABC_sub_bind	4.58
PF13649	Methyltransf_25	3.82
PF00291	PALP	3.05
PF02954	HTH_8	2.29
PF13191	AAA_16	1.53
PF00296	Bac_luciferase	1.53
PF07589	PEP-CTERM	1.53
PF01844	HNH	1.53
PF02357	NusG	0.76
PF05036	SPOR	0.76
PF03171	2OG-FeII_Oxy	0.76
PF04366	Ysc84	0.76
PF01266	DAO	0.76
PF10043	DUF2279	0.76
PF07366	SnoaL	0.76
PF05494	MlaC	0.76
PF01464	SLT	0.76
PF13490	zf-HC2	0.76
PF12773	DZR	0.76
PF01591	6PF2K	0.76
PF03354	TerL_ATPase	0.76
PF01740	STAS	0.76
PF04773	FecR	0.76
PF05226	CHASE2	0.76
PF02775	TPP_enzyme_C	0.76
PF13792	Obsolete Pfam Family	0.76
PF16537	T2SSB	0.76
PF00196	GerE	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.58
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.53
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.76
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.76
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.76
COG4252	Extracytoplasmic sensor domain CHASE2 (specificity unknown)	Signal transduction mechanisms [T]	0.76
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
All Organisms	root	All Organisms	48.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
cellular organisms	root	All Organisms → cellular organisms	48.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.09 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	22.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.58 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.76 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	22.14 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.76 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	20.61 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	1.53 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	14.50 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	1.53 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.76 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.50 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1.53 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.76 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.50 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1.53 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.50 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1.53 %
unclassified Symbiodinium	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium	0.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.15 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.50 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1.53 %
Symbiodinium sp. KB8	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	0.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100076775	All Organisms → cellular organisms → Bacteria	3094	Open in IMG/M
3300002245\|JGIcombinedJ26739_100788710	Not Available	830	Open in IMG/M
3300002886\|JGI25612J43240_1078223	Not Available	521	Open in IMG/M
3300005174\|Ga0066680_10135080	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1535	Open in IMG/M
3300005440\|Ga0070705_100877503	Not Available	720	Open in IMG/M
3300005445\|Ga0070708_100025159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5087	Open in IMG/M
3300005445\|Ga0070708_100098185	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2678	Open in IMG/M
3300005445\|Ga0070708_100113304	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2494	Open in IMG/M
3300005445\|Ga0070708_101853128	Not Available	559	Open in IMG/M
3300005467\|Ga0070706_100014558	All Organisms → cellular organisms → Bacteria	7266	Open in IMG/M
3300005467\|Ga0070706_101733352	Not Available	568	Open in IMG/M
3300005467\|Ga0070706_101854588	Not Available	547	Open in IMG/M
3300005468\|Ga0070707_100109953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2673	Open in IMG/M
3300005468\|Ga0070707_100371513	Not Available	1389	Open in IMG/M
3300005468\|Ga0070707_101032816	Not Available	787	Open in IMG/M
3300005468\|Ga0070707_101871026	Not Available	567	Open in IMG/M
3300005471\|Ga0070698_100028124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5843	Open in IMG/M
3300005471\|Ga0070698_100218978	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300005518\|Ga0070699_100178397	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1884	Open in IMG/M
3300005518\|Ga0070699_100223725	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1677	Open in IMG/M
3300005518\|Ga0070699_101563167	Not Available	604	Open in IMG/M
3300005536\|Ga0070697_100143518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2009	Open in IMG/M
3300005536\|Ga0070697_100954058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	762	Open in IMG/M
3300005549\|Ga0070704_100912859	Not Available	790	Open in IMG/M
3300006172\|Ga0075018_10793847	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300006852\|Ga0075433_10354954	Not Available	1295	Open in IMG/M
3300007255\|Ga0099791_10004587	All Organisms → cellular organisms → Bacteria	5673	Open in IMG/M
3300007255\|Ga0099791_10072926	Not Available	1558	Open in IMG/M
3300009038\|Ga0099829_10013011	All Organisms → cellular organisms → Bacteria → Proteobacteria	5473	Open in IMG/M
3300009038\|Ga0099829_10109176	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300009038\|Ga0099829_11039466	Not Available	679	Open in IMG/M
3300009088\|Ga0099830_10010194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	5699	Open in IMG/M
3300009088\|Ga0099830_11620227	Not Available	540	Open in IMG/M
3300009089\|Ga0099828_11930580	Not Available	518	Open in IMG/M
3300009090\|Ga0099827_10039927	Not Available	3463	Open in IMG/M
3300009090\|Ga0099827_10178718	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300009821\|Ga0105064_1021257	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300011270\|Ga0137391_10683289	Not Available	854	Open in IMG/M
3300011270\|Ga0137391_11275703	Not Available	582	Open in IMG/M
3300011271\|Ga0137393_10056475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3089	Open in IMG/M
3300012096\|Ga0137389_10069350	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2722	Open in IMG/M
3300012096\|Ga0137389_11744135	Not Available	519	Open in IMG/M
3300012189\|Ga0137388_11183276	All Organisms → cellular organisms → Bacteria → Terrabacteria group	702	Open in IMG/M
3300012200\|Ga0137382_10836836	Not Available	663	Open in IMG/M
3300012205\|Ga0137362_10026404	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	4551	Open in IMG/M
3300012208\|Ga0137376_11599820	Not Available	543	Open in IMG/M
3300012210\|Ga0137378_10323550	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1434	Open in IMG/M
3300012211\|Ga0137377_10014524	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6769	Open in IMG/M
3300012361\|Ga0137360_10116360	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2072	Open in IMG/M
3300012361\|Ga0137360_11006479	Not Available	719	Open in IMG/M
3300012363\|Ga0137390_10822000	Not Available	886	Open in IMG/M
3300012363\|Ga0137390_11182570	Not Available	712	Open in IMG/M
3300012582\|Ga0137358_10175871	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1459	Open in IMG/M
3300012685\|Ga0137397_10020265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4668	Open in IMG/M
3300012685\|Ga0137397_10041035	All Organisms → cellular organisms → Bacteria	3309	Open in IMG/M
3300012918\|Ga0137396_10615848	Not Available	803	Open in IMG/M
3300012922\|Ga0137394_10102821	All Organisms → cellular organisms → Bacteria	2408	Open in IMG/M
3300012922\|Ga0137394_10551542	All Organisms → cellular organisms → Bacteria → Terrabacteria group	977	Open in IMG/M
3300012923\|Ga0137359_10479021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1099	Open in IMG/M
3300012927\|Ga0137416_10085093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2337	Open in IMG/M
3300012927\|Ga0137416_10741609	Not Available	865	Open in IMG/M
3300014884\|Ga0180104_1086200	Not Available	881	Open in IMG/M
3300015259\|Ga0180085_1056770	Not Available	1124	Open in IMG/M
3300017997\|Ga0184610_1072927	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300018000\|Ga0184604_10059149	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1084	Open in IMG/M
3300018028\|Ga0184608_10316686	Not Available	685	Open in IMG/M
3300018031\|Ga0184634_10222097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	863	Open in IMG/M
3300018054\|Ga0184621_10050262	Not Available	1391	Open in IMG/M
3300018056\|Ga0184623_10246288	Not Available	816	Open in IMG/M
3300018063\|Ga0184637_10162814	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300018066\|Ga0184617_1105789	Not Available	791	Open in IMG/M
3300018071\|Ga0184618_10040714	Not Available	1647	Open in IMG/M
3300018075\|Ga0184632_10013105	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	3487	Open in IMG/M
3300018084\|Ga0184629_10143219	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300018084\|Ga0184629_10434928	Not Available	688	Open in IMG/M
3300018429\|Ga0190272_10273638	Not Available	1287	Open in IMG/M
3300018469\|Ga0190270_11506082	Not Available	722	Open in IMG/M
3300019458\|Ga0187892_10005822	All Organisms → cellular organisms → Bacteria → Proteobacteria	18945	Open in IMG/M
3300019997\|Ga0193711_1019911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	849	Open in IMG/M
3300020015\|Ga0193734_1046141	Not Available	806	Open in IMG/M
3300020199\|Ga0179592_10068086	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1628	Open in IMG/M
3300020579\|Ga0210407_10186684	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1608	Open in IMG/M
3300021168\|Ga0210406_11332837	Not Available	515	Open in IMG/M
3300021178\|Ga0210408_10692154	Not Available	803	Open in IMG/M
3300021432\|Ga0210384_10012513	All Organisms → cellular organisms → Bacteria	8511	Open in IMG/M
3300025324\|Ga0209640_10047980	All Organisms → cellular organisms → Bacteria	3715	Open in IMG/M
3300025910\|Ga0207684_10010214	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8264	Open in IMG/M
3300025910\|Ga0207684_10022213	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5419	Open in IMG/M
3300025910\|Ga0207684_10065529	Not Available	3084	Open in IMG/M
3300025910\|Ga0207684_10590228	Not Available	949	Open in IMG/M
3300025910\|Ga0207684_11189479	Not Available	632	Open in IMG/M
3300025922\|Ga0207646_10118196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2381	Open in IMG/M
3300025922\|Ga0207646_10167724	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1982	Open in IMG/M
3300025922\|Ga0207646_10267492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1545	Open in IMG/M
3300026356\|Ga0257150_1046844	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300026359\|Ga0257163_1033516	Not Available	809	Open in IMG/M
3300026481\|Ga0257155_1002989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1977	Open in IMG/M
3300026496\|Ga0257157_1068163	Not Available	608	Open in IMG/M
3300026499\|Ga0257181_1021877	Not Available	956	Open in IMG/M
3300026508\|Ga0257161_1015558	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1420	Open in IMG/M
3300026514\|Ga0257168_1010545	All Organisms → cellular organisms → Bacteria	1753	Open in IMG/M
3300026514\|Ga0257168_1016557	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1481	Open in IMG/M
3300026514\|Ga0257168_1109233	Not Available	616	Open in IMG/M
3300026551\|Ga0209648_10174360	Not Available	1671	Open in IMG/M
3300026551\|Ga0209648_10421280	Not Available	855	Open in IMG/M
3300026557\|Ga0179587_10227182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1189	Open in IMG/M
3300027511\|Ga0209843_1074559	Not Available	584	Open in IMG/M
3300027645\|Ga0209117_1062285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1079	Open in IMG/M
3300027651\|Ga0209217_1018001	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300027655\|Ga0209388_1104411	Not Available	812	Open in IMG/M
3300027775\|Ga0209177_10246259	Not Available	658	Open in IMG/M
3300027846\|Ga0209180_10063982	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300027846\|Ga0209180_10664815	Not Available	570	Open in IMG/M
3300027882\|Ga0209590_10171290	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300027882\|Ga0209590_10231061	Not Available	1176	Open in IMG/M
3300027903\|Ga0209488_10221651	Not Available	1423	Open in IMG/M
3300027910\|Ga0209583_10439883	Not Available	630	Open in IMG/M
3300028536\|Ga0137415_10552301	Not Available	961	Open in IMG/M
3300028792\|Ga0307504_10261831	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300028792\|Ga0307504_10338140	Not Available	577	Open in IMG/M
3300028828\|Ga0307312_10164966	Not Available	1411	Open in IMG/M
3300029636\|Ga0222749_10004516	All Organisms → cellular organisms → Bacteria → Proteobacteria	5842	Open in IMG/M
3300030620\|Ga0302046_10885301	Not Available	715	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1153597	Not Available	512	Open in IMG/M
3300031720\|Ga0307469_10183873	Not Available	1611	Open in IMG/M
3300032180\|Ga0307471_103268239	Not Available	574	Open in IMG/M
3300032782\|Ga0335082_10029841	All Organisms → cellular organisms → Bacteria → Proteobacteria	5791	Open in IMG/M
3300033407\|Ga0214472_11059886	Not Available	714	Open in IMG/M
3300033407\|Ga0214472_11109930	Not Available	694	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.24%
Host-Associated	Host-Associated	0.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.02%
Aquatic	Environmental → Aquatic	12.21%
Plants	Host-Associated → Plants	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.26%
Sediment	Environmental → Aquatic → Sediment	12.21%
Cave	Environmental → Terrestrial → Cave	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.02%
Loam	Environmental → Terrestrial → Soil → Loam	25.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.21%
Sand	Environmental → Terrestrial → Soil → Sand	2.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.37%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.05%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.29%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	32.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	21.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.05%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.29%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.53%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.53%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.53%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.76%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.76%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1000767752	3300002245	Forest Soil	MIVAGMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVFVSSVRARDYVAVYGYKRCMIEEGYAEGGIWKGYSGWRNE*
JGIcombinedJ26739_1007887102	3300002245	Forest Soil	MTVAWPMIVAGMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVFVSSVRARDYVAVYGYKRCMIEEGYAEGGIWKGYSGWRNE*
JGI25612J43240_10782232	3300002886	Grasslands Soil	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHLNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0066680_101350803	3300005174	Soil	MIVGWPAVVVGMLLALSGCATTWSRAATSDADFNLDNRACQHMNTQTVFVSSVLARDYVAVYGYKRRMIEEGYTEGGTWKGYSGWRNE*
Ga0070705_1008775032	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWQG
Ga0070708_1000251594	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREK*
Ga0070708_1000981851	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDTEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYT
Ga0070708_1001133042	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MITRWPVIAVAMLALSGCATTWARPATSDAEFNLDSRACQHMNTRLVFLSSVPVGEYVVRSGYHRCMLEEGYTEGGSWKGYWGWREE*
Ga0070708_1018531282	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDNRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWQGHSGWRDE*
Ga0070706_10001455811	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTTCWPAIVVALLTLSGCATAWSRPATSDAEFNLDSRVCQHMNTRLVFLSSVLVGEYVVQSGYRRCMLEEGYTAGGSWKAYSGWREE*
Ga0070706_1017333522	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDTEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWQGHSGWRDE*
Ga0070706_1018545882	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWQGHSGWRDE*
Ga0070707_1001099534	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTTCWPAIVVAMLTLSGCATAWSRPATSDAEFNLDSRVCQHMNTRLVFLSSVLVGEYVVQSGFRRCMLEEGYTEGGSWKGYSGWREE*
Ga0070707_1003715133	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MITRWPVIAVAMLALSGCATTWARPATSDVEFDLDSRACQHMNTQLVFLSSVPVGEYVVRSGYQRCMLEEGYTEGGSWKGYWGWREE*
Ga0070707_1010328162	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRWLVIVVAMLASSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGY
Ga0070707_1018710262	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWKGHSGWRDE*
Ga0070698_1000281246	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWKGHSGWRDE*
Ga0070698_1002189785	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRWLVIVVAMLASSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEE
Ga0070699_1001783972	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDNRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWKGHSGWRDE*
Ga0070699_1002237253	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDTEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFW
Ga0070699_1015631672	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MIARWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVRDYVAVTGYKRCMTEEGYTAGGFWKGHSGWRDE*
Ga0070697_1001435181	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIARWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVRDYVAVTGYKRCMTEEGYTAGGFWQGHSGWRDE*
Ga0070697_1009540581	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MITRWPVIAVAMLALSGCATTWARPATSDAEFNLDSRACQHMNTRLVFLSSVPVGEYVVRSGYHRCMLEEGYTEGGSWKG
Ga0070704_1009128592	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRWLVIVVAMLASSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYAEGGSWTGSSGWRDEGA
Ga0075018_107938472	3300006172	Watersheds	WPAIVVAMLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0075433_103549542	3300006852	Populus Rhizosphere	MFTRWPCIVVAVLALSGCTTTWSRPATSDAEFNLDSRACQNMNAELVVLPSVPVGEYVVRSGYRRCMLEEGYTEGGAWKGSSGWREE*
Ga0099791_100045879	3300007255	Vadose Zone Soil	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0099791_100729263	3300007255	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVSASSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE*
Ga0099829_100130112	3300009038	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVPVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE*
Ga0099829_101091763	3300009038	Vadose Zone Soil	MIPRWPAIVVAMLALSGCATTWSRPATSDAEFNLDSRMCQHMNTQLVVLSSIPVGEYVVRSGYQRCMLEEGYTEGGSWTGSSGWREE*
Ga0099829_110394662	3300009038	Vadose Zone Soil	MNTRWPAIAVAMLALSGCATTWARPATSDAEFNLDSRACQHMNTQLVFLSSVPVGEYVVRSGYQRCMLEEGYTEGGSWKGYWGWREE*
Ga0099830_100101943	3300009088	Vadose Zone Soil	MMTRWPAIVVAMLALSGCATTWSRPGTSDAEFNLDSRVCEHMNTQLVFPVGEYVVRSGYRRCMLEEGYTEGGSWKGDSGWREE*
Ga0099830_116202271	3300009088	Vadose Zone Soil	MNTRWPAIAVAMLALSGCATTWARPATSDAEFNLDSRACQHMNTQLVFLSSVPVGEYVVRSGYRRCMLEEGYTEGGSWKGYWGWREE*
Ga0099828_119305801	3300009089	Vadose Zone Soil	PPMIPRWPAIVVAMLALSGCATTWSRPATSDAEFNLDSRMCQHMNTPLVVLSSIPVGEYVVRSGYQRCMLEEGYTEGGSWTGSSGWREE*
Ga0099827_100399278	3300009090	Vadose Zone Soil	MNTRWPAIAVAMLALSGCATTWARPATSDGEFNLDSRACQHMNTQLVFLSSVPVGEYVVRSGYQRCMREEGYTEGGSWKGYWGWREE*
Ga0099827_101787183	3300009090	Vadose Zone Soil	MSTRRLVIAVAMLALSGCATTWSRAATSDAEFYLDDRVCQHTNSQIVFISSGLVREYVAVAGYKRCMTEEGYTAGGFWKGHSGWRDE*
Ga0105064_10212572	3300009821	Groundwater Sand	MIPRWPAMVVAMLTLSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVFRSSIPVGEYVVRSGYQRCMLEEGYTEGGSWKGYSGWREE*
Ga0137391_106832892	3300011270	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVSVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE*
Ga0137391_112757032	3300011270	Vadose Zone Soil	RPLMIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137393_100564751	3300011271	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGNKRCMIEEGYTEGGISKGYSGWRNE*
Ga0137389_100693504	3300012096	Vadose Zone Soil	MIPRRPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREK*
Ga0137389_117441352	3300012096	Vadose Zone Soil	WPAIAVAMLALSGCATTWARPATSDAEFNLDSRACQHMNTQLVFLSSVPVGEYVVRSGYQRCMLEEGYTEGGSWKGYWGWREE*
Ga0137388_111832761	3300012189	Vadose Zone Soil	TLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137382_108368362	3300012200	Vadose Zone Soil	VARTMASSIVSPSFTAWLAIVVVILPFSGCATTWSRPVTADAEFNLDNRACQHMNTQTISLGRAWVRDYVSVAGYKQCMEAEGYTEGGHWKGSAGWQE*
Ga0137362_100264043	3300012205	Vadose Zone Soil	MIVGWPAVVVGMLLALSGCATTWSRAATSDADFNLDNRACQHMNTQTVFVSSVLARDYVAVYGYKRCMIEEGYTEGGTWKGYSGWRNE*
Ga0137376_115998202	3300012208	Vadose Zone Soil	MTVAWPMIVAAMLTLSGCATRWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYREGGIWKGYSGWRN
Ga0137378_103235501	3300012210	Vadose Zone Soil	GWPAVVVGMLLALSGCATTWSRAATSDADFNLDNRACQHMNTQTVFVSSVLARDYVAVYGYKRRMIEEGYTEGGTWKGYSGWRNE*
Ga0137377_100145246	3300012211	Vadose Zone Soil	MIVGWPAVVVGMLLALSGCATTWSRAATSDADFNLDNRACQHMNTQTVFVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE*
Ga0137360_101163603	3300012361	Vadose Zone Soil	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137360_110064792	3300012361	Vadose Zone Soil	VRKRLLMTVAWPMIVAAMLALSGCATTWSRVATSDTDFNLDNRACQHMNTQTVFVSSVLARDYVAVYGYKRCMIEEGYTESGTWKGYSGWRND*
Ga0137390_108220003	3300012363	Vadose Zone Soil	MTIGWPVIVAAMLALSGCATTWSRMATSDADFNLANRACQPMNTQTVVVSSVLARDYVAVYGYKRCMLEEGYTEGGIWKGYSGWRNE*
Ga0137390_111825701	3300012363	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE*
Ga0137358_101758712	3300012582	Vadose Zone Soil	MMIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137397_100202651	3300012685	Vadose Zone Soil	PKRPLMIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137397_100410352	3300012685	Vadose Zone Soil	MIAHWPAIVGAMLALSGCATTWSRTTTSDAEFNLDNRACQHMNTQTVFLSSVLVRDYVAVSGYKRCMMQEGYTEGGFWKGQSGWRDE*
Ga0137396_106158483	3300012918	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYYGWRNE*
Ga0137394_101028215	3300012922	Vadose Zone Soil	MIAHWPAIVVAMLALSGCATTWSRATTSDAEFNLDNRACQHMNTQTVFLSSVLVRDYVAVSGYKRCMMQEGYTEGGFWKGQSGWRDE*
Ga0137394_105515422	3300012922	Vadose Zone Soil	MILRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHLNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137359_104790211	3300012923	Vadose Zone Soil	MIVAAMLTLSGCATRWSRVATSDADFNLDNRACQHMNTQTVFVSSVLARDYVAMHGYKRCMIEEGYTEGGIWKGYSGWLND*
Ga0137416_100850933	3300012927	Vadose Zone Soil	MILRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ*
Ga0137416_107416092	3300012927	Vadose Zone Soil	MTVAWPMIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYTEGGIWRGYSGWRNE*
Ga0180104_10862001	3300014884	Soil	AIVVAMLALSGCATTSSRPATSDAEFNLDSRVCQHMNTQLVFRVGDYVVRSGYQRCMLEEGYTEGGAWKGDAGWR*
Ga0180085_10567701	3300015259	Soil	LATVRRRPPMIPRWPALVVAMLALSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVLRSSIPVGEYVVRSGYQRCMLEEGYTEGGAWTGSSGWREE*
Ga0184610_10729272	3300017997	Groundwater Sediment	MVTRWPAMVVAMLALSRCATTWSRPATSDAQFNLDSRACQHMNTRLVHLSSGLVGEYVVPAGYRRCMLEEGYTEGGSWKGYSGWREE
Ga0184604_100591491	3300018000	Groundwater Sediment	MIAHWPAIVVAMLGLSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVFPVGEYVVRSGYQRCMLEEGYTEGGSWTGSSGWQEE
Ga0184608_103166861	3300018028	Groundwater Sediment	MMTRWLALVVAMLGLSGCATTWARPATSDAEFNLDSRVCQHMNTQLVFPVGEYVVRSGYQRCMLEEGYTEGGSWTGSSGWREE
Ga0184634_102220972	3300018031	Groundwater Sediment	MSTRWPAIVVAMLALSGCATTWSRPATSEAEFNLDSRACQHMNTQLVVPVGEYVVRSGYQRCMLEEGY
Ga0184621_100502623	3300018054	Groundwater Sediment	MVTHWPALVVAMLALPGCATTWSRPATSDAEFNLDSRVCQHMNTQLVVLSSIPVGEYVVRSGYRRCMLEEGYTEGGSWKGDSGWRGE
Ga0184623_102462882	3300018056	Groundwater Sediment	MIVRWPAIVIAMLALSGCASTWSRPATSDAEFNLDSRACQHMNTRPVHLSSGLVGEYVVPAGYRRCMLEEGYTEGGSWTGDAGWRDE
Ga0184637_101628142	3300018063	Groundwater Sediment	MIPRWPAIVVAMLTLSGCATTWSRPATSDAEFNLDSRVCQHMNTHLVFRSSIPVGEYVVRSGYRRCMLEEGYTEGGSWKGYSGWREE
Ga0184617_11057891	3300018066	Groundwater Sediment	MIAHWPAIVVAMLALSGCATTWSRTATSDADFNLDNRACQHMNTQTVFLSSVLVRDYVAVSGYKRCMMQEGYTEGGFWKGQSGWRDE
Ga0184618_100407144	3300018071	Groundwater Sediment	MIAHWPAIVVAMLALSGCATTWSRTATSDAEFNLDNRACQHMNTQTVFLSSVLVRDYVAVSGYKRCMMQEGYTEGGFWKGQSGWRDE
Ga0184632_100131054	3300018075	Groundwater Sediment	MMTRWPAIVVAMLALSGCATTWSRPGTSDAEFNLDSRVCEHMNTQLVFPVGEYVVRSGYRRCMLEEGYTEGGSWKGDSGWREE
Ga0184629_101432191	3300018084	Groundwater Sediment	MIVRWPAIVVAMLALSGCASTWSRPATSDAEFNLDRRACQHMNTRLVHLSSGLVGEYVVPAGYRRCMREEGYTEGGSWTGDAGWRDE
Ga0184629_104349282	3300018084	Groundwater Sediment	MMTRWPAIVVAMLALSGCATTWSRPGTSDAEFNLDSRVCQHMNTQLVFPVGEYIVRSGYRRCMLEEGYTEGGSWKGDSGWREE
Ga0190272_102736383	3300018429	Soil	MTTHWPVIVVAMLALSGCTTTWSRAATSDAEFNLDNRACQHMNTQTVFLSAVRVRDYVAVSGYKRCMMQEGYTEGGFWKGHPGWRDE
Ga0190270_115060822	3300018469	Soil	MIAHWPAIVVAMLALSGCATTWSRAATSDAEFILDNRTCQHMNTQTVVLSAVRARDYVAVAGYKRCMMQEGYTEGGFWKGQSGWRDE
Ga0187892_100058226	3300019458	Bio-Ooze	MITSWPAIAVAMLALSGCATTWSRAATSDAEFNLDNRVCQHTNSQIVFLSSVLVREYVAVSGYKRCMMEEGYTEGGFWKGHSGWRDE
Ga0193711_10199112	3300019997	Soil	MIAHWPAIVVAMLALSGCATTWSRAATSDAEFNLDNRACQHMNTQTVFLSAVSARDYVAVSGYKRCMMQEGYTEGGFWKGQSGWRDE
Ga0193734_10461411	3300020015	Soil	MIPRWPAIVVAMLTLSGCATTWSRPATSSAEFNLDSRACQHMNAQLVFFSSGLVGEYVVPSGYHRCMLEEGYTKGGSWKGYSGWREQ
Ga0179592_100680863	3300020199	Vadose Zone Soil	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0210407_101866841	3300020579	Soil	MILRRPAIVFAMLTLSGCATTWARPATSDAEFNLDSRVCQHMNTQLVVVSPVLVGAYVVPSGYQRCMLEEGYTEGGSWKGYAGWREK
Ga0210406_113328371	3300021168	Soil	MILRRPAIVFAMLTLSGCATTWARPATSDAEFNLDSRVCQHMNTQLVVVSPVLVGAYVVPSGYQRCMLEEGYTEGGPWMGSAGWR
Ga0210408_106921542	3300021178	Soil	SMRRPHGFWLRRQWCPRAPTKVRKRLLMTVAWPTIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYTEGGTWKGYSGWRNE
Ga0193719_104189791	3300021344	Soil	VALLLLPTSLRGDLSKSHDSNHRHLAKVRRRPPMIAHWPAIVVAMLALSGCATTWSRTATSDVEFNFDNRACQHMNTQTVFLSSVLVRDYVAVSGYKRCMMQEGYTEGGFWKGQSGWRDE
Ga0210384_100125132	3300021432	Soil	MILGRPAIVFAMLTLSGCATTWARPATSDAEFNLDSRVCQHMNTQLVVVSPVLVGAYVVPSGYQRCMLEEGYTEGGSWKGYAGWREK
Ga0209640_100479804	3300025324	Soil	MTRWPAIVVAVLALSGCATTWSRPATSDADFNLDNRVCQHMNAQLLFPVGEYVVRSGYRRCMLEEGYTEGGVWKGYSGWRVE
Ga0207684_100102147	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREK
Ga0207684_100222134	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDTEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWQGHSGWRDE
Ga0207684_100655292	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTTCWPAIVVALLTLSGCATAWSRPATSDAEFNLDSRVCQHMNTRLVFLSSVLVGEYVVQSGYRRCMLEEGYTAGGSWKAYSGWREE
Ga0207684_105902282	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MITRWPVIAVAMLALSGCATTWARPATSDAEFNLDSRACQHMNTRLVFLSSVPVGEYVVRSGYHRCMLEEGYTEGGSWKGYWGWREE
Ga0207684_111894792	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MIARWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVRDYVAVTGYKRCMTEEGYTAGGFWKGHSGWRDE
Ga0207646_101181964	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MMTRWPAIAVAMLALSGCATTWSRAATSDAEFNLDDRVCQHTNSQVVFLSSGLVREYVAVTGYKRCMTEEGYTAGGFWKGHSGWRDE
Ga0207646_101677243	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTTCWPAIVVAMLTLSGCATAWSRPATSDAEFNLDSRVCQHMNTRLVFLSSVLVGEYVVQSGFRRCMLEEGYTEGGSWKGYSGWREE
Ga0207646_102674922	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MITRWPVIAVAMLALSGCATTWARPATSDVEFDLDSRACQHMNTQLVFLSSVPVGEYVVRSGYQRCMLEEGYTEGGSWKGYWGWREE
Ga0257150_10468441	3300026356	Soil	LAKGPKRPLMIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0257163_10335162	3300026359	Soil	MIPRWPAIVVAMLTLSGCATTWSRPATSSAEFNLDSRVCQHMNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0257155_10029892	3300026481	Soil	MIPRWPAIVVAMLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0257157_10681632	3300026496	Soil	MTVGWPAIVVAMLLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVSVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYPGWRNE
Ga0257181_10218773	3300026499	Soil	MTIGWPMIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVSASSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE
Ga0257161_10155582	3300026508	Soil	MIPRWPAIVVAMLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0257168_10105454	3300026514	Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAMHGYKRCMIEEGYTEGGIWKGYSGWRNE
Ga0257168_10165572	3300026514	Soil	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMQEEGYTEGGSWKGYSGWREQ
Ga0257168_11092332	3300026514	Soil	MILRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNAQLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0209648_101743605	3300026551	Grasslands Soil	MTLAWPMIVAAILALSGCVTTWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNETHRGCRSRPAEAAQET
Ga0209648_104212802	3300026551	Grasslands Soil	PRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYIVPSGYQRCMLEEGYTEGGSWKGYSGWREK
Ga0179587_102271823	3300026557	Vadose Zone Soil	MIPRWPAIVVATLTLSGCATTWSRPATSSAEFNLDSRACQHMNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0209843_10745592	3300027511	Groundwater Sand	MIPRWPAIVVAMLTLSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVFRSSIPVGEYVVRSGYQRCMLEEGYTEGGSWKGYSGWREE
Ga0209117_10622851	3300027645	Forest Soil	VRKRLLMTVAWPMIVAGMLALSGCATTWSRVATSDADFNLDNRACQHMNTRTVFVSSALARDYVAVYGYKRCMMEEGYTEGGIWKGYSGWRNE
Ga0209217_10180012	3300027651	Forest Soil	VRKRLLMTVAWPMIVAAMLALSGCATTWSRVATSDAEFNLDNRACQHMNTQTVVVSSVLARDYVAVYGYKRCMIEEGYTEGGTWKGYSGWRNE
Ga0209388_11044111	3300027655	Vadose Zone Soil	LPMTIGWPMIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVSASSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE
Ga0209177_102462592	3300027775	Agricultural Soil	MFTRWPCIVVAVLALSGCTTTWSRPATSDAEFNLDSRACQNMNAELVVLPSVPVGEYVVRSGYRRCMLEEGYTEGGAWKGSSGWREE
Ga0209180_100639823	3300027846	Vadose Zone Soil	MIPRWPAIVVAMLALSGCATTWSRPATSDAEFNLDSRMCQHMNTQLVVLSSIPVGEYVVRSGYQRCMLEEGYTEGGSWTGSSGWREE
Ga0209180_106648151	3300027846	Vadose Zone Soil	MIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVPVSSVLARDYVAVYGYKRCMIEEGYTEGGIWKGYSGWRNE
Ga0209590_101712903	3300027882	Vadose Zone Soil	MSTRRLVIAVAMLALSGCATTWSRAATSDAEFYLDDRVCQHTNSQIVFISSGLVREYVAVAGYKRCMTEEGYTAGGFWKGHSGWRDE
Ga0209590_102310611	3300027882	Vadose Zone Soil	MNTRWPAIAVAMLALSGCATTWARPATSDGEFNLDSRACQHMNTQLVFLSSVPVGEYVVRSGYQRCMREEGYTEGGSWKGYWGWREE
Ga0209488_102216514	3300027903	Vadose Zone Soil	MTVAWPMIVAAMLTLSGCATRWSRVATSDADFNLDNRACQHMNTQTVVVSSVLARDYVAMHGYKRCMIEEGYTEGGIWKGYSGWLND
Ga0209583_104398831	3300027910	Watersheds	VAPGSANKRAAEPWQGFVGVPPMFPRWPAIVVVLLALSGCATTWSRPATSPAEFNLDNRACQHMNTQLVVRSSGPVGEYVVPSGYQRCMLEEGYTEGGSWKGSSGWREE
Ga0137415_105523012	3300028536	Vadose Zone Soil	MTVAWPMIVAAMLALSGCATTWSRVATSDADFNLDNRACQHMNTQTVSASSVLARDYVAVYGYKRCMIEEGYTEGGIWRGYSGWRNE
Ga0307504_102618312	3300028792	Soil	ATTWSRPATSSAEFNLDSRVCQHMNARLVFLSSGLVGEYVVPSGYQRCMLEEGYTEGGSWKGYSGWREQ
Ga0307504_103381401	3300028792	Soil	MFTRWPCIVVAVLALSGCTTTWSRPATSDVEFNLDSQACQNMNAQLVVLPSVPVGEYVVRSGYRRCMLEEGYTEGGAWKGYSGWREQ
Ga0307312_101649662	3300028828	Soil	MMTRWPAIVVAMLGLSGCATTWSRPATSDAEFNLDTRVCEHMNTQLVFPVGEYVVRSGYRRCMLEEGYTEGGSWKGDSGWRGE
Ga0307312_111317421	3300028828	Soil	SMRRRRGSWLRRRHGSPRALAKVRRRPPMITRWPALVVAMLALSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVFPVGDYVGRSGYRRCMLEEGYTEGGAWKGDSGWREE
Ga0222749_100045169	3300029636	Soil	MILRRPAIVFAMLTLSGCATTWAQPATSDAEFNLDSRVCQHMNTQLVVVSPVLVGAYVVPSGYQRCMLEEGYTEGGSWKGYAGWREK
Ga0302046_108853011	3300030620	Soil	MTRWPAIVVAMLALSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVFPVGEYMVRSGYRRCMLEEGYTEGGSWKGYSGWRVE
(restricted) Ga0255311_11535971	3300031150	Sandy Soil	PPMTTHWPAIAVAMLALSGCATTWSRQATSDAEFNLDSRVCQHMNTQLVFLSSVPVGEYVVQSGYRRCMLEEGYTEGGSWKGHSGWREE
Ga0307469_101838733	3300031720	Hardwood Forest Soil	MTTCWPAIVVAMLTLSGCATAWSRPATSDAEFNLDSRVCQHMNTRLVFLSSVLVGEYVVQSGYRRCMLEEGYAEGGSWKGYSGWREE
Ga0307471_1032682391	3300032180	Hardwood Forest Soil	MFTRWPCIVVAVLALSGCTTTWSRPATSDAEFNLDSRACQNMNAELVVLPSVPVGEYVVRSGYRRCMLEEGYIEGGAWKGSSGWREE
Ga0335082_100298413	3300032782	Soil	MIPIGPAIVLTMLALSGCATTWSRPATSAAGFDVDQRACQHMNARLVVLPSGRVGEYVVPSGYQRCMLEEGYSEGGSWKSSSGWRPE
Ga0214472_110598862	3300033407	Soil	MTRWPAIVVAVLALSGCATTWSRPATSDADFNLDSRVCQHMNAQLLFPVGEYVVRSGYRRCMLEEGYTEGGVWKGYSGWRVE
Ga0214472_111099301	3300033407	Soil	MMTRWPALVVAMLALSGCATTWSRPATSDAEFNLDSRVCQHMNTQLVLRSSIPVGEYVVRAGYQRCMREEGYTEGGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters